AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00010_mtub_reg_100.orf -o00010_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 fba 95 fba #2 Rv0458 67 hypothetical protein Rv0458 #3 Rv0460 59 hypothetical protein Rv0460 #4 Rv0461 37 hypothetical protein Rv0461 #5 Rv0462 63 hypothetical protein Rv0462 #6 gpm 156 gpm #7 adhB 98 adhB #8 Rv0767c 201 hypothetical protein Rv0767c #9 lpdB 300 lpdB #10 pdc 64 pdc #11 pgi 300 pgi #12 Rv1019 254 hypothetical protein Rv1019 #13 mfd 58 mfd #14 lpqU 87 lpqU #15 eno 96 eno #16 gap 300 gap #17 pykA 107 pykA #18 Rv1861 300 hypothetical protein Rv1861 #19 adhA 73 adhA #20 hspX 196 hspX #21 Rv2136c 63 hypothetical protein Rv2136c #22 aceE 51 aceE #23 adhE2 300 adhE2 #24 Rv2421c 274 hypothetical protein Rv2421c #25 pdhA 258 pdhA #26 pfkA 95 pfkA #27 gatC 84 gatC #28 fecB 214 fecB #29 adhC 69 adhC #30 pgmA 69 pgmA #31 entD 153 entD #32 lpdA 202 lpdA Motif number 1 CTCACACTACCGCCGGGGCCACAATGGCTT 2 13 0 CGCCGGGGCC 0.956138 -55 CATGGCAGCTGACCAGCGCG 3 50 1 GACCAGCGCG 0.710019 -10 GATTACCGGTCGGCACCCGGAACCGAGCCG 4 15 1 CGGCACCCGG 0.808235 -23 ACGGCCGGTTCACCAAGGCCGATACATGGG 6 26 0 CACCAAGGCC 0.575713 -131 TCGGTCCGCTGCGCAGCGCGTTCATACCGC 6 75 0 GCGCAGCGCG 0.737731 -82 TGTAGGTCAACGGCGCTAGGGCGT 7 5 0 CGGCGCTAGG 0.821708 -94 TCGGCCGGAACGCCGACTGGCTGAGTGTAG 7 30 0 CGCCGACTGG 0.955529 -69 TCGGCGTTCCGGCCGAGGCTAGGGACCACT 7 44 1 GGCCGAGGCT 0.820852 -55 CTCCCAACTTCTCCGACTCTCATCATCGAT 8 17 1 CTCCGACTCT 0.544579 -185 GAGACCGTATCCGCAAGGCCGCTACACCGT 8 74 1 CCGCAAGGCC 0.607217 -128 CTGACCGATGCACCAGGGGCCACGTCGCGT 8 105 1 CACCAGGGGC 0.704515 -97 ATGGGACTGTCCGCGACGCGACGTGGCCCC 8 120 0 CCGCGACGCG 0.981666 -82 CGGATGGTCGCGGCAGGAGGCAAGCCAGTC 8 169 0 CGGCAGGAGG 0.798625 -33 ACGCCGGCCGGTCCTTCTCAC 9 2 1 CGCCGGCCGG 0.987199 -299 TACTGCTCAACGCCAACCCCAAGAGGACGG 9 45 1 CGCCAACCCC 0.679811 -256 GAACAAACCACCGCGACACGGCGTCTGTCA 9 109 1 CCGCGACACG 0.932938 -192 GCACACACAACACCGACACTGAGACATAAA 9 160 1 CACCGACACT 0.765212 -141 CCTTTTCGCACGGCGTGTCGAGAGCTTTTG 9 194 1 CGGCGTGTCG 0.84872 -107 GTGGGCGATAGGCCGGCACGGCTCACCGGC 9 230 1 GGCCGGCACG 0.939293 -71 CGGCACGGCTCACCGGCGCTAGGCGCGCGT 9 243 1 CACCGGCGCT 0.963895 -58 CGGACTCTGCCAGCGACGCTACGCGCGCCT 9 263 0 CAGCGACGCT 0.934154 -38 CCCGACTGGACGCCGATTCGCTATCGTGCG 10 14 0 CGCCGATTCG 0.804002 -51 GAAGTTGAACCGCCGTTGCGCCGCTTGGTA 11 34 0 CGCCGTTGCG 0.855849 -267 GTGTGGGTTTCGCCATCCGGGAAGTTGAAC 11 54 0 CGCCATCCGG 0.567138 -247 CAATGGCGCACGCCAGTACGCCCAGGTGTG 11 79 0 CGCCAGTACG 0.526491 -222 GCCTGATCTGCAGCGGGTGCTGGGCGACGG 11 120 1 CAGCGGGTGC 0.844746 -181 AGCGGGTGCTGGGCGACGGTCAGCGGCCTC 11 131 1 GGGCGACGGT 0.876298 -170 TCAGCGGCCTCGGCGGGGGCCGAGGCCGCG 11 150 1 CGGCGGGGGC 0.980447 -151 GGGGCCGAGGCCGCGAGAGCGCAGGCCCGC 11 165 1 CCGCGAGAGC 0.759492 -136 TCTACAGGCTCGGCGATGCGGGCCTGCGCT 11 182 0 CGGCGATGCG 0.955586 -119 TTATCGTGCTCGGCGGCACTCGCCGTTTGT 11 219 0 CGGCGGCACT 0.952675 -82 CCGCTGTCTTCGCCGAGCCTTTAGTTATCG 11 243 0 CGCCGAGCCT 0.87771 -58 TCGGCGAAGACAGCGGCTCTGATCGACGCC 11 257 1 CAGCGGCTCT 0.865793 -44 CTCCTTGAAGCTCCGTCGCCAGGACTCGAA 12 16 1 CTCCGTCGCC 0.760977 -239 GTGGTGTAATCGGCAGCACCTCTGATTTTG 12 62 0 CGGCAGCACC 0.782137 -193 CTGCCGATTACACCACGACGGATTGCACAT 12 76 1 CACCACGACG 0.435782 -179 ACGGTGTCAACGCCGTCAGCACAGTCAACG 12 120 1 CGCCGTCAGC 0.799435 -135 GGTGGGTAGACGGCGACAGCGTTGACTGTG 12 139 0 CGGCGACAGC 0.929817 -116 GCCGTCTACCCACCGGCCCCACGCAAACCG 12 155 1 CACCGGCCCC 0.942688 -100 CGCGCGTCACCCGCGTCGGGTTTTCCGGCG 12 230 0 CCGCGTCGGG 0.936479 -25 CGCGGGTGACGCGCGCCAGG 12 245 1 GCGCGCCAGG 0.728205 -10 CCGCCCCGAGTGCGACGGGGTAGTCAACA 14 10 1 GTGCGACGGG 0.818496 -78 GGTTGGCTGGCCCCGACCGCTGTTAGCGTA 15 36 0 CCCCGACCGC 0.867591 -61 CGGCCCGGTGCGGCGGGGCTCATGTTCCCC 16 63 0 CGGCGGGGCT 0.979067 -238 AGCCCCGCCGCACCGGGCCGTTTCCAAATG 16 73 1 CACCGGGCCG 0.955949 -228 AGCGCAATGTCCGCGGTAGGGACGCGGCGG 16 129 1 CCGCGGTAGG 0.794534 -172 GGTAGGGACGCGGCGGCTGGGATCGGTGGG 16 143 1 CGGCGGCTGG 0.980894 -158 TCGGTGGGGTGAGCGCCCGGCTTCTCAAAG 16 165 1 GAGCGCCCGG 0.787846 -136 GCGAGGGGAGCCCCGGGACTCTTACCGGCC 16 194 1 CCCCGGGACT 0.809827 -107 CGGCCGAAGGCGGCGGGTGTCACTGATCTA 16 219 1 CGGCGGGTGT 0.893064 -82 AACAACCACTGGCCGTCAGCCTAGATCAGT 16 240 0 GGCCGTCAGC 0.481646 -61 CAGCCAACCAGACCGCGGGTAGGCGCGG 17 9 0 GACCGCGGGT 0.594365 -99 CGGTCAACACCACCGCGGGCAGCCCAGCCA 17 33 0 CACCGCGGGC 0.896307 -75 GTAGGGCCGGCACCGCCGGGTCGGCACACC 17 62 0 CACCGCCGGG 0.974644 -46 CCGGCCCTACCGCCGTCGCGACTATGCTGA 17 82 1 CGCCGTCGCG 0.964277 -26 CGCTGCCCGTCCCCGGCGCGACCTATGGAG 18 47 0 CCCCGGCGCG 0.990025 -254 CGGGGACGGGCAGCGGGTCGTGTGCGCGTC 18 62 1 CAGCGGGTCG 0.935425 -239 CCGTGCGAAACGCCGACACCGTTGAACTCC 18 102 1 CGCCGACACC 0.934161 -199 TTCTGCTGTTCAGCGGTGCTTTCAGGTGGA 18 129 0 CAGCGGTGCT 0.82636 -172 CCCACGAAAACACCGTGGGGCGCCACACAC 18 164 1 CACCGTGGGG 0.880319 -137 CGCCACAACCCACCGACACCGTCACTACCC 18 203 1 CACCGACACC 0.845891 -98 TGGGCTAAGCCAGCGTCTGCAAGGAGAACC 18 279 1 CAGCGTCTGC 0.590063 -22 AGTGTGACTGCGGCGGCCGGCGACGGTAGC 19 40 1 CGGCGGCCGG 0.988675 -34 TCTTTCTGAACGGCGGTTGGCAGACAACAG 20 42 1 CGGCGGTTGG 0.890374 -155 CCAAGTGGATCACCGACGGGCGCGGACAAA 20 84 1 CACCGACGGG 0.97485 -113 GACAAATGGCCCGCGCTTCGGGGACTTCTG 20 108 1 CCGCGCTTCG 0.645039 -89 AGCCCATCGTGGCCAGGGCTAGGGACAGAA 20 133 0 GGCCAGGGCT 0.507261 -64 ACCCGGTTACCGGCGGCCGGTAGACGGATG 21 14 0 CGGCGGCCGG 0.988675 -50 GTCGTCGTGACCGCGGCTCCGGCG 21 50 1 CCGCGGCTCC 0.917199 -14 TTCGGGTGATCCGCGAGGGT 22 42 1 CCGCGAGGGT 0.878667 -10 ACTCATCTGCGCCGCTCCTCCTCATC 23 7 1 CTGCGCCGCT 0.862357 -294 TCTGCATCGTCACCGGCGCGACTCATCTGC 23 44 1 CACCGGCGCG 0.990018 -257 CGCGACTCATCTGCGCCGCTCCTGCTCATC 23 60 1 CTGCGCCGCT 0.862357 -241 TCTGCATCGTCACCGGCGCGACTCATCTGC 23 97 1 CACCGGCGCG 0.990018 -204 CGCGACTCATCTGCGCCGCTCCTGCTCATC 23 113 1 CTGCGCCGCT 0.862357 -188 TCTGCATCGTCACCGGCGCGACTCATCTGC 23 150 1 CACCGGCGCG 0.990018 -151 CGCGACTCATCTGCGCCGCTCCTGCTCATC 23 166 1 CTGCGCCGCT 0.862357 -135 TCTGCATCGTCACCGGCGCGACTCATCTGC 23 203 1 CACCGGCGCG 0.990018 -98 CGCGACTCATCTGCGCCGCTCCTCCTCATC 23 219 1 CTGCGCCGCT 0.862357 -82 TCTGCATCGTCACCGGCGCGCATGGTCAGC 23 256 1 CACCGGCGCG 0.990018 -45 CGCGCATGGTCAGCGACGCTACACCGTAGG 23 272 1 CAGCGACGCT 0.934154 -29 CCCGCGGGCAGTGCGGCGCG 24 1 0 GTGCGGCGCG 0.920254 -274 GCGCCGCACTGCCCGCGGGTATCACCGGTA 24 12 1 GCCCGCGGGT 0.586863 -263 CCGCGGGTATCACCGGTAGGCCATGCCGCT 24 24 1 CACCGGTAGG 0.770953 -251 GTGACTCCCTCGGCGAGCGGCATGGCCTAC 24 39 0 CGGCGAGCGG 0.940828 -236 AGGGAGTCACCGGCGAGGGTCGCGACACCC 24 59 1 CGGCGAGGGT 0.948325 -216 TCGAGGTCGTCGCCGACGGGGCGGGACTGG 24 87 0 CGCCGACGGG 0.990031 -188 GTTCCGTTCGCGGCAACTGCCAGCCAGCCT 24 199 0 CGGCAACTGC 0.537502 -76 CGCAGATCCCCCGCGACACGGTTGCGATGC 25 14 1 CCGCGACACG 0.932938 -245 GCCAGTGTTGCGGCGAGCGGAAGCTTTGGT 25 94 1 CGGCGAGCGG 0.940828 -165 CGAAGTTGATCGCCGGCCGCACCAAAGCTT 25 114 0 CGCCGGCCGC 0.972378 -145 TGGGAAACCGCTGCGAGCCGAAGTTGATCG 25 132 0 CTGCGAGCCG 0.837561 -127 GGCGCTGGTGGTGCGGCGCTCACAGCACAT 25 168 0 GTGCGGCGCT 0.75645 -91 GCACCACCAGCGCCGACGCTAAGGATGGAA 25 184 1 CGCCGACGCT 0.970189 -75 AGAATCGCACGGGCGAGGGGCGCCGGATGC 26 31 0 GGGCGAGGGG 0.932505 -65 TGTCTGCTCGCGCCAGGTCGGCGGCCGCGC 26 62 1 CGCCAGGTCG 0.778581 -34 CCTCATCTTGCCGCGCGGCCGCCGACCTGG 26 74 0 CCGCGCGGCC 0.522391 -22 GATGTATCCACGGCGTTTCGGCAGCCGGCG 27 31 1 CGGCGTTTCG 0.610446 -54 GGACGGCCGACGCCGGCTGCCGAAACGCCG 27 41 0 CGCCGGCTGC 0.953816 -44 AGCCGGCGTCGGCCGTCCGGCCACCCATTA 27 53 1 GGCCGTCCGG 0.741522 -32 CTGGGTTTTGGCCCGGTCCGGGCTGGATGT 28 24 0 GCCCGGTCCG 0.576991 -191 ATCAGGCTGGCGGCAGGCCTGGTCCTACAA 28 78 1 CGGCAGGCCT 0.645444 -137 TGCCAGACTCCGCCGGCGGGCCGTTGCAGA 28 119 1 CGCCGGCGGG 0.995227 -96 ACCCCGATTCGCGCGGGCGGAAAGCGTTGG 28 149 0 GCGCGGGCGG 0.822677 -66 GTCGACGGCTGGCCGAGTGCTACCGTCGAA 28 177 1 GGCCGAGTGC 0.578436 -38 AACGCGTGCTGTCCGGCGGG 28 205 1 GTCCGGCGGG 0.894581 -10 TGAGGCGCAGCGCTAGGCTTTGGGATA 29 8 1 CAGCGCTAGG 0.640739 -62 AGCATTAGCACACCGAGAGGGATCGACCA 30 10 0 CACCGAGAGG 0.858441 -60 TGTGCTAATGCTGCGCTTCGCACTGTAGGG 30 28 1 CTGCGCTTCG 0.441241 -42 TTGCGGGGGAGAGCGGCGCCT 31 2 0 GAGCGGCGCC 0.921939 -152 CCGCTCTCCCCCGCAAGCGGCAGGGACCCC 31 16 1 CCGCAAGCGG 0.507252 -138 GACACTGTGACTGCGCGGGCGACGACGAAG 31 64 0 CTGCGCGGGC 0.834866 -90 ACAGTGGTTCGGGCGACAGGCCTAGGATGT 31 113 1 GGGCGACAGG 0.872013 -41 AAAGCTTAGACGGCGGGGGCTCGGGTGGTA 32 16 1 CGGCGGGGGC 0.980447 -187 ACCCGCACCGCAGCGCGGCGCGATGGGTAC 32 43 0 CAGCGCGGCG 0.903551 -160 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 32 101 1 CGCCGCTGCG 0.859835 -102 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 32 159 1 CGCCGCTGCG 0.859835 -44 ********** Masking position 4 Map Score: 185.911 Number of sites scoring better than the average of aligned sites = 113972 Number in coding regions = 107089 Number in noncoding regions = 6883 Number of orfs with sites within 600 bp upstream = 1628 Fraction of orfs with sites within 600 bp upstream = 0.261484 Motif number 2 CGTATTCGGCTCCTCGTCAAAATCATGT 2 50 0 TGGCTCTCTC 0.935235 -18 CGCGCTGGTCAGCTGCCATGACC 3 47 0 CCGCTGTCGC 0.727517 -13 CCGAATTCTCCTCGGTCCGCTGCGCAGCGCGTT 6 83 0 CCGGTCGCGC 0.926446 -74 CACGCACTCCCGCACTCCTCATCGTGGACCAAA 6 120 0 CCACTCTCTC 0.517845 -37 CAACTTCTCCGACTCTCATCATCGATTGGACAC 8 21 1 GCTCTCTCTC 0.882451 -181 GACTGTCCGCGACGCGACGTGGCCCCTGGTGCA 8 113 0 GCGCGAGTGC 0.484144 -89 ACGCCGGCCGGTCCTTCTCACCTAGTGCC 9 7 1 GCGGTCTTTC 0.750141 -294 CGGCGCTAGGCGCGCGTAGCGTCGCTGGCAGAG 9 256 1 CCGCGTGCTC 0.720406 -45 CAATCCGGCGTACGGTCGTCTTC 10 52 1 TCGGTCTCTC 0.916728 -13 CAAGTACCAAGCGGCGCAACGGCGGTTCAACTT 11 30 1 GGGCGCACGC 0.653431 -271 GGTGCTGGGCGACGGTCAGCGGCCTCGGCGGGG 11 135 1 GCGGTCGCGC 0.892288 -166 GGCTCGGCGATGCGGGCCTGCGCTCTCGCGGCC 11 173 0 TCGGGCTGGC 0.734234 -128 GTCGGGTTTTCCGGCGCCTTATCCGGCCCTTTA 12 213 0 CGGCGCTTTC 0.61802 -42 CCTGGCGCGCGTCACCCGCGTCGGGT 12 239 0 GCGCGCTCCC 0.918013 -16 TAGTCAACATTGGGCCCGGCTTCCCCGCCCG 13 9 0 TGGCCCGCTC 0.508193 -50 CGGCTTCCGTCACGATCATCGTCCCATGGGTTT 14 39 0 CCGATCTCTC 0.564603 -49 CCCAAGACCGTCCGTGCAGCAGCTACGACGCAA 15 64 1 TCGTGCGCGC 0.617547 -33 CCGGTGCGGCGGGGCTCATGTTCCCCATAGGAT 16 56 0 GGGCTCTGTC 0.938884 -245 TTGTCTCTCCTCGGCTTATTTGTTG 16 286 0 GCTCTCTCGC 0.856177 -15 GGGACGGGCAGCGGGTCGTGTGCGCGTCTTTCA 18 64 1 GGGGTCTGGC 0.745651 -237 TGTTTTCGTGGGCGCTTTTCTGCTGTTCAGCGG 18 143 0 GCGCTTTCGC 0.826843 -158 ATCACCCGAACTCGGTCGGGTTCGCTTGCGCTG 22 19 0 CCGGTCGGTC 0.817257 -33 ACTCATCTGCGCCGCTCCTCCTCATCGCTTCGC 23 11 1 GCGCTCTCTC 0.941329 -290 TCCTCATCGCTTCGCTCTGCATCGTCACCGGCG 23 29 1 TCGCTCGCTC 0.979948 -272 CATCGTCACCGGCGCGACTCATCTGCGCCGCTC 23 48 1 GCGCGATCTC 0.94864 -253 ACTCATCTGCGCCGCTCCTGCTCATCGCTTCGC 23 64 1 GCGCTCTGTC 0.979406 -237 TGCTCATCGCTTCGCTCTGCATCGTCACCGGCG 23 82 1 TCGCTCGCTC 0.979948 -219 CATCGTCACCGGCGCGACTCATCTGCGCCGCTC 23 101 1 GCGCGATCTC 0.94864 -200 ACTCATCTGCGCCGCTCCTGCTCATCGCTTCGC 23 117 1 GCGCTCTGTC 0.979406 -184 TGCTCATCGCTTCGCTCTGCATCGTCACCGGCG 23 135 1 TCGCTCGCTC 0.979948 -166 CATCGTCACCGGCGCGACTCATCTGCGCCGCTC 23 154 1 GCGCGATCTC 0.94864 -147 ACTCATCTGCGCCGCTCCTGCTCATCGCTTCGC 23 170 1 GCGCTCTGTC 0.979406 -131 TGCTCATCGCTTCGCTCTGCATCGTCACCGGCG 23 188 1 TCGCTCGCTC 0.979948 -113 CATCGTCACCGGCGCGACTCATCTGCGCCGCTC 23 207 1 GCGCGATCTC 0.94864 -94 ACTCATCTGCGCCGCTCCTCCTCATCGCTTCGC 23 223 1 GCGCTCTCTC 0.941329 -78 TCCTCATCGCTTCGCTCTGCATCGTCACCGGCG 23 241 1 TCGCTCGCTC 0.979948 -60 CATCGTCACCGGCGCGCATGGTCAGCGACGCTA 23 260 1 GCGCGCTGTC 0.981799 -41 TCGCAACCGTGTCGCGGGGGATCTGCGCCC 25 8 0 GCGCGGGGTC 0.758957 -251 CGCCGCAACACTGGCGCTTCCTCCATTATGCCC 25 76 0 CGGCGCTCTC 0.956833 -183 CGATCACAACGCGGTTACGCGTCAGAAGATGCC 25 219 0 GGGTTAGCTC 0.153368 -40 ACCGTCTCCTCAGCTCGCGATCAC 25 245 0 CGTCTCTCGC 0.407203 -14 TCTGTGTCTGCTCGCGCCAGGTCGGCGGCCGCG 26 58 1 CCGCGCAGTC 0.606457 -38 CCCTCATCTTGCCGCGCGGCCGCCGACCTGGCG 26 72 0 GCGCGCGCGC 0.869658 -24 AGACTCCGCCGGCGGGCCGTTGCAGACCAACGC 28 123 1 GCGGGCGTGC 0.740833 -92 TACCCATCGCGCCGCGCTGCGGTGCGGGTCATC 32 44 1 GCGCGCGCGT 0.726093 -159 GCGCTGCGGTGCGGGTCATCGTCAAGCTGTGCT 32 57 1 GGGGTCTCTC 0.927704 -146 GCTTGACTGCTCGGCTCCTCCTCACGCCGCTGC 32 87 1 TGGCTCTCTC 0.935693 -116 GACGATGCACGCCGCGCAGCGGCGTGAGGAGGA 32 102 0 GCGCGCGCGC 0.527907 -101 GTTGGACTGCTCGGCTCCTCCTCACGCCGCTGC 32 145 1 TGGCTCTCTC 0.935693 -58 GACGATGCACGCCGCGCAGCGGCGTGAGGAGGA 32 160 0 GCGCGCGCGC 0.527907 -43 * ***** ** ** Masking position 13 Map Score: 91.0722 Number of sites scoring better than the average of aligned sites = 13481 Number in coding regions = 12379 Number in noncoding regions = 1102 Number of orfs with sites within 600 bp upstream = 678 Fraction of orfs with sites within 600 bp upstream = 0.108898 Motif number 3 TCGACCATTAGGGTAGGGGCC 5 53 1 GGGTAGGGGC 0.915009 -11 AAGGCCGATACATGGGCGGCCTACGAGGTG 6 12 0 CATGGGCGGC 0.883363 -145 TCCAATCGATGATGAGAGTCGGAGAAGTTG 8 21 0 GATGAGAGTC 0.253874 -181 GGTCAGGACGGTGTAGCGGCCTTGCGGATA 8 81 0 GTGTAGCGGC 0.879897 -121 ACCAGGGGCCACGTCGCGTCGCGGACAGTC 8 116 1 ACGTCGCGTC 0.195517 -86 AGCTATCGGATGGTCGCGGCAGGAGGCAAG 8 175 0 TGGTCGCGGC 0.518366 -27 CGCTACGCGCGCCTAGCGCCGGTGAGCCGT 9 247 0 GCCTAGCGCC 0.72763 -54 CGCTAGGCGCGCGTAGCGTCGCTGGCAGAG 9 259 1 GCGTAGCGTC 0.876289 -42 AGTTGAACCGCCGTTGCGCCGCTTGGTACT 11 32 0 CCGTTGCGCC 0.564541 -269 TGCAGCGGGTGCTGGGCGACGGTCAGCGGC 11 128 1 GCTGGGCGAC 0.740893 -173 GCTGGGCGACGGTCAGCGGCCTCGGCGGGG 11 138 1 GGTCAGCGGC 0.603396 -163 CAGCGGCCTCGGCGGGGGCCGAGGCCGCGA 11 151 1 GGCGGGGGCC 0.704194 -150 CAGGCTCGGCGATGCGGGCCTGCGCTCTCG 11 178 0 GATGCGGGCC 0.876492 -123 GCGGTATCTACAGGCTCGGCGATGCGGGCC 11 188 0 CAGGCTCGGC 0.380015 -113 GACAAACGGCGAGTGCCGCCGAGCACGATA 11 218 1 GAGTGCCGCC 0.279249 -83 TAATGCCGTGGAGTGGCGTCGATCAGAGCC 11 271 0 GAGTGGCGTC 0.886207 -30 CACTCCACGGCATTAGGGTCGAACC 11 286 1 CATTAGGGTC 0.2401 -15 AGATAGTTCAGGTTCGAGTCCTGGCGACGG 12 28 0 GGTTCGAGTC 0.267521 -227 GTATCGGTTTGCGTGGGGCCGGTGGGTAGA 12 159 0 GCGTGGGGCC 0.87892 -96 CGACGCGGGTGACGCGCGCCAGG 12 242 1 GACGCGCGCC 0.519501 -13 ACGCTAACAGCGGTCGGGGCCAGCCAACCC 15 37 1 CGGTCGGGGC 0.906939 -60 ACGGCCCGGTGCGGCGGGGCTCATGTTCCC 16 64 0 GCGGCGGGGC 0.970068 -237 GCAATGTCCGCGGTAGGGACGCGGCGGCTG 16 132 1 CGGTAGGGAC 0.471565 -169 GGATCGGTGGGGTGAGCGCCCGGCTTCTCA 16 162 1 GGTGAGCGCC 0.925811 -139 TTCTCAAAGCGAGGGGAGCCCCGGGACTCT 16 186 1 GAGGGGAGCC 0.787662 -115 CAAATAAGCCGAGGAGAGACAA 16 289 1 GAGGAGAGAC 0.456238 -12 GTCGCGACGGCGGTAGGGCCGGCACCGCCG 17 74 0 CGGTAGGGCC 0.787806 -34 GGCCCTACCGCCGTCGCGACTATGCTGAGT 17 84 1 CCGTCGCGAC 0.81238 -24 GTGGGTCGTGGTTGGCGACTTGTACAGCT 18 10 1 GGTTGGCGAC 0.622823 -291 CTGCCCGTCCCCGGCGCGACCTATGGAGAA 18 45 0 CCGGCGCGAC 0.899608 -256 CGAAAACACCGTGGGGCGCCACACACGTTT 18 168 1 GTGGGGCGCC 0.923638 -133 TTGAGTGTGACTGCGGCGGCCGGCGACGGT 19 37 1 CTGCGGCGGC 0.388227 -37 CGGCCGGCGACGGTAGCGGCATGATGGAGT 19 53 1 CGGTAGCGGC 0.93505 -21 GGATCACCGACGGGCGCGGACAAATGGCCC 20 90 1 CGGGCGCGGA 0.409133 -107 AAGCGATGAGGAGGAGCGGCGCAGATGAGT 23 11 0 GAGGAGCGGC 0.982519 -290 CGGCGCAGATGAGTCGCGCCGGTGACGATG 23 48 0 GAGTCGCGCC 0.974834 -253 AAGCGATGAGCAGGAGCGGCGCAGATGAGT 23 64 0 CAGGAGCGGC 0.962958 -237 CGGCGCAGATGAGTCGCGCCGGTGACGATG 23 101 0 GAGTCGCGCC 0.974834 -200 AAGCGATGAGCAGGAGCGGCGCAGATGAGT 23 117 0 CAGGAGCGGC 0.962958 -184 CGGCGCAGATGAGTCGCGCCGGTGACGATG 23 154 0 GAGTCGCGCC 0.974834 -147 AAGCGATGAGCAGGAGCGGCGCAGATGAGT 23 170 0 CAGGAGCGGC 0.962958 -131 CGGCGCAGATGAGTCGCGCCGGTGACGATG 23 207 0 GAGTCGCGCC 0.974834 -94 AAGCGATGAGGAGGAGCGGCGCAGATGAGT 23 223 0 GAGGAGCGGC 0.982519 -78 CGTCGCTGACCATGCGCGCCGGTGACGATG 23 260 0 CATGCGCGCC 0.913154 -41 CCAACCTACGGTGTAGCGTCGCTGACCATG 23 276 0 GTGTAGCGTC 0.662262 -25 TGACTCCCTCGGCGAGCGGCATGGCCTACC 24 38 0 GGCGAGCGGC 0.805812 -237 TCACCGGCGAGGGTCGCGACACCCAGTCCC 24 65 1 GGGTCGCGAC 0.917253 -210 CGTCGCCGACGGGGCGGGACTGGGTGTCGC 24 80 0 GGGGCGGGAC 0.887514 -195 GCCGCAGTTCCGTTCGCGGCAACTGCCAGC 24 205 0 CGTTCGCGGC 0.886085 -70 GCCAATCGTGCATGGGCGTCGATTGGGAGT 24 254 1 CATGGGCGTC 0.66965 -21 GGAAGCGCCAGTGTTGCGGCGAGCGGAAGC 25 88 1 GTGTTGCGGC 0.509894 -171 CTGGGAAACCGCTGCGAGCCGAAGTTGATC 25 133 0 GCTGCGAGCC 0.542297 -126 GTCGGCGCTGGTGGTGCGGCGCTCACAGCA 25 171 0 GTGGTGCGGC 0.682909 -88 TGCGTTCCATCCTTAGCGTCGGCGCTGGTG 25 188 0 CCTTAGCGTC 0.471118 -71 AGGGGCGCCGGATGCGAGTCTGTGTCTGCT 26 16 0 GATGCGAGTC 0.38104 -80 TCGCACGGGCGAGGGGCGCCGGATGCGAGT 26 27 0 GAGGGGCGCC 0.978152 -69 CAGGTCGGCGGCCGCGCGGCAAGATGAGGG 26 75 1 GCCGCGCGGC 0.498163 -21 CCCTCGATCAGGCTGGCGGCAGGCCTGGTC 28 72 1 GGCTGGCGGC 0.813564 -143 CCAGACTCCGCCGGCGGGCCGTTGCAGACC 28 121 1 CCGGCGGGCC 0.927498 -94 TGAGGCGCAGCGCTAGGCTTT 29 2 1 GAGGCGCAGC 0.757363 -68 GCGCTTCGCACTGTAGGGCCTGTGGGCAGA 30 40 1 CTGTAGGGCC 0.464326 -30 TTGCGGGGGAGAGCGGCGCCT 31 2 0 GAGCGGCGCC 0.795209 -152 AGCACGATGAGGTGGGGGTCCCTGCCGCTT 31 30 0 GGTGGGGGTC 0.634418 -124 GACCCGCACCGCAGCGCGGCGCGATGGGTA 32 44 0 GCAGCGCGGC 0.641086 -159 GCCGCGCTGCGGTGCGGGTCATCGTCAAGC 32 54 1 GGTGCGGGTC 0.740814 -149 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCA 32 90 0 GAGGAGGAGC 0.373375 -113 TCCTCACGCCGCTGCGCGGCGTGCATCGTC 32 105 1 GCTGCGCGGC 0.733623 -98 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCC 32 148 0 GAGGAGGAGC 0.373375 -55 TCCTCACGCCGCTGCGCGGCGTGCATCGTC 32 163 1 GCTGCGCGGC 0.733623 -40 ********** Masking position 10 Map Score: 96.2429 Number of sites scoring better than the average of aligned sites = 26101 Number in coding regions = 23929 Number in noncoding regions = 2172 Number of orfs with sites within 600 bp upstream = 1084 Fraction of orfs with sites within 600 bp upstream = 0.174109 Motif number 4 GAAACGTTCCTCCTGACGACTCCG 1 82 0 CGTTCCTCCT 0.860114 -14 CGTATTCGGCTCCTCGTCAAAATCATG 2 51 0 GGCTCCTCGT 0.698922 -17 CGCACTCCCGCACTCCTCATCGTGGACCAA 6 121 0 CACTCCTCAT 0.66606 -36 GCGGTAGGGACGCGGCGGCTGGGATCGGTG 16 141 1 CGCGGCGGCT 0.77235 -160 ATCAGTGACACCCGCCGCCTTCGGCCGGTA 16 216 0 CCCGCCGCCT 0.86268 -85 TCATCTGCGCCGCTCCTCCTCATCGCTTCG 23 13 1 CGCTCCTCCT 0.990571 -288 CTCATCGCTTCGCTCTGCATCGTCACCGGC 23 31 1 CGCTCTGCAT 0.943601 -270 TCGTCACCGGCGCGACTCATCTGCGCCGCT 23 50 1 CGCGACTCAT 0.889068 -251 TCATCTGCGCCGCTCCTGCTCATCGCTTCG 23 66 1 CGCTCCTGCT 0.96259 -235 CTCATCGCTTCGCTCTGCATCGTCACCGGC 23 84 1 CGCTCTGCAT 0.943601 -217 TCGTCACCGGCGCGACTCATCTGCGCCGCT 23 103 1 CGCGACTCAT 0.889068 -198 TCATCTGCGCCGCTCCTGCTCATCGCTTCG 23 119 1 CGCTCCTGCT 0.96259 -182 CTCATCGCTTCGCTCTGCATCGTCACCGGC 23 137 1 CGCTCTGCAT 0.943601 -164 TCGTCACCGGCGCGACTCATCTGCGCCGCT 23 156 1 CGCGACTCAT 0.889068 -145 TCATCTGCGCCGCTCCTGCTCATCGCTTCG 23 172 1 CGCTCCTGCT 0.96259 -129 CTCATCGCTTCGCTCTGCATCGTCACCGGC 23 190 1 CGCTCTGCAT 0.943601 -111 TCGTCACCGGCGCGACTCATCTGCGCCGCT 23 209 1 CGCGACTCAT 0.889068 -92 TCATCTGCGCCGCTCCTCCTCATCGCTTCG 23 225 1 CGCTCCTCCT 0.990571 -76 CTCATCGCTTCGCTCTGCATCGTCACCGGC 23 243 1 CGCTCTGCAT 0.943601 -58 CGCGCCGCACTGCCCGCGGG 24 1 1 CGCGCCGCAC 0.848569 -274 AATAACCAATCGTGCTGCCTTATCAATGGC 24 160 1 CGTGCTGCCT 0.635707 -115 CCGCAACACTGGCGCTTCCTCCATTATGCC 25 77 0 GGCGCTTCCT 0.859623 -182 ACGGGCGAGGGGCGCCGGATGCGAGTCTGT 26 23 0 GGCGCCGGAT 0.814199 -73 CAAAGCCTAGCGCTGCGCCTCA 29 3 0 CGCTGCGCCT 0.931455 -67 TTGACTGCTCGGCTCCTCCTCACGCCGCTG 32 89 1 GGCTCCTCCT 0.96259 -114 TGGACTGCTCGGCTCCTCCTCACGCCGCTG 32 147 1 GGCTCCTCCT 0.96259 -56 ********** Masking position 10 Map Score: 50.7007 Number of sites scoring better than the average of aligned sites = 2653 Number in coding regions = 2341 Number in noncoding regions = 312 Number of orfs with sites within 600 bp upstream = 245 Fraction of orfs with sites within 600 bp upstream = 0.0393511 Motif number 5 TATCGGCCTTGGTGAACCGGCCGTTACGGT 6 32 1 GGTGAACCGG 0.421431 -125 CGCGCTGCGCAGCGGACCGAGGAGAATTCG 6 85 1 AGCGGACCGA 0.861976 -72 CCTAGCCTCGGCCGGAACGCCGACTGGCTG 7 37 0 GCCGGAACGC 0.705725 -62 CACTAGGTGAGAAGGACCGGCCGGCGT 9 8 0 GAAGGACCGG 0.508344 -293 TGGGCGATAGGCCGGCACGGCTCACCGGCG 9 231 1 GCCGGCACGG 0.843193 -70 GCCGCACGATAGCGAATCGGCGTCCAGTCG 10 12 1 AGCGAATCGG 0.347831 -53 CTACAGGCTCGGCGATGCGGGCCTGCGCTC 11 181 0 GGCGATGCGG 0.826955 -120 TGTTGATGTGGCCGGACCGGATAAAGGGCC 12 192 1 GCCGGACCGG 0.982697 -63 CGCCGGAAAACCCGACGCGGGTGACGCGCG 12 230 1 CCCGACGCGG 0.852805 -25 TACGACGCAAGGAGAACCCA 15 87 1 GGAGAACCCA 0.246868 -10 CATGAGCCCCGCCGCACCGGGCCGTTTCCA 16 69 1 GCCGCACCGG 0.877936 -232 CAAAGCGAGGGGAGCCCCGGGACTCTTACC 16 190 1 GGAGCCCCGG 0.568998 -111 CAGACCGCGGGTAGGCGCGG 17 1 0 GTAGGCGCGG 0.452395 -107 TGACCGGTGTGCCGACCCGGCGGTGCCGGC 17 57 1 GCCGACCCGG 0.942611 -51 CGCGACCTATGGAGAACCGGAAGCTGTACA 18 31 0 GGAGAACCGG 0.888353 -270 AAATCGTTACGCAGAAGCGGTATACCGATA 18 235 1 GCAGAAGCGG 0.943315 -66 GCGTCTGCAAGGAGAACCGC 18 291 1 GGAGAACCGC 0.68597 -10 GACAGAAGTCCCCGAAGCGCGGGCCATTTG 20 110 0 CCCGAAGCGC 0.720975 -87 CGCCGGAGCCGCGGTCACGAC 21 53 0 GCCGGAGCCG 0.941147 -11 AAACAGCGCAAGCGAACCCGACCGAGTTCG 22 16 1 AGCGAACCCG 0.518727 -36 GAAGCGATGAGGAGGAGCGGCGCAGATGAG 23 12 0 GGAGGAGCGG 0.974851 -289 GACGATGCAGAGCGAAGCGATGAGGAGGAG 23 25 0 AGCGAAGCGA 0.870398 -276 CTGCATCGTCACCGGCGCGACTCATCTGCG 23 45 1 ACCGGCGCGA 0.889382 -256 GAAGCGATGAGCAGGAGCGGCGCAGATGAG 23 65 0 GCAGGAGCGG 0.972542 -236 GACGATGCAGAGCGAAGCGATGAGCAGGAG 23 78 0 AGCGAAGCGA 0.870398 -223 CTGCATCGTCACCGGCGCGACTCATCTGCG 23 98 1 ACCGGCGCGA 0.889382 -203 GAAGCGATGAGCAGGAGCGGCGCAGATGAG 23 118 0 GCAGGAGCGG 0.972542 -183 GACGATGCAGAGCGAAGCGATGAGCAGGAG 23 131 0 AGCGAAGCGA 0.870398 -170 CTGCATCGTCACCGGCGCGACTCATCTGCG 23 151 1 ACCGGCGCGA 0.889382 -150 GAAGCGATGAGCAGGAGCGGCGCAGATGAG 23 171 0 GCAGGAGCGG 0.972542 -130 GACGATGCAGAGCGAAGCGATGAGCAGGAG 23 184 0 AGCGAAGCGA 0.870398 -117 CTGCATCGTCACCGGCGCGACTCATCTGCG 23 204 1 ACCGGCGCGA 0.889382 -97 GAAGCGATGAGGAGGAGCGGCGCAGATGAG 23 224 0 GGAGGAGCGG 0.974851 -77 GACGATGCAGAGCGAAGCGATGAGGAGGAG 23 237 0 AGCGAAGCGA 0.870398 -64 CTGCATCGTCACCGGCGCGCATGGTCAGCG 23 257 1 ACCGGCGCGC 0.868267 -44 GGTCGTCGCCGACGGGGCGGGACTGGGTGT 24 83 0 GACGGGGCGG 0.342945 -192 CTGCCAGCCAGCCTAAGCGAGCAGCCATTG 24 183 0 GCCTAAGCGA 0.266544 -92 ATGTGAAGAGTCCGGACCGATCGCGAACGC 25 42 0 TCCGGACCGA 0.586627 -217 CCAGGTCGGCGGCCGCGCGGCAAGATGAGG 26 74 1 GGCCGCGCGG 0.69753 -22 GACGCCGGCTGCCGAAACGCCGTGGATACA 27 33 0 GCCGAAACGC 0.529799 -52 AAACATCCAGCCCGGACCGGGCCAAAACCC 28 22 1 CCCGGACCGG 0.897458 -193 TGAGGCGCAGCGCTAGGCTTTGG 29 4 1 GGCGCAGCGC 0.831821 -66 GGCCCTACAGTGCGAAGCGCAGCATTAGCA 30 30 0 TGCGAAGCGC 0.577908 -40 CGCACCGCAGCGCGGCGCGATGGGTACCAC 32 40 0 CGCGGCGCGA 0.81882 -163 CGCGCCGCGCTGCGGTGCGGGTCATCGTCA 32 51 1 TGCGGTGCGG 0.431464 -152 AGCGGCGTGAGGAGGAGCCGAGCAGTCAAG 32 88 0 GGAGGAGCCG 0.826641 -115 AGCGGCGTGAGGAGGAGCCGAGCAGTCCAA 32 146 0 GGAGGAGCCG 0.826641 -57 ********** Masking position 8 Map Score: 72.0285 Number of sites scoring better than the average of aligned sites = 22423 Number in coding regions = 20769 Number in noncoding regions = 1654 Number of orfs with sites within 600 bp upstream = 946 Fraction of orfs with sites within 600 bp upstream = 0.151943 Motif number 6 GTCGAGTGCTCGTCGGCCTGACCCAGTAGGT 5 27 0 CTCGGCCTGA 0.823934 -37 CCCGAATTCTCCTCGGTCCGCTGCGCAGCGC 6 86 0 CTCGGTCCGC 0.903417 -71 TCCGATATTGCCTCATCGAGACCGTATCCGC 8 57 1 CTCATCGAGA 0.1742 -145 AAGGCCGCTACACCGTCCTGACCGATGCACC 8 88 1 CCCGTCCTGA 0.783506 -114 GCGCGCCTAGCGCCGGTGAGCCGTGCCGGCC 9 240 0 CCCGGTGAGC 0.953921 -61 GAAGTTGAACCGCCGTTGCGCCGCTTGGTAC 11 33 0 CCCGTTGCGC 0.923053 -268 GGCCGCTGACCGTCGCCCAGCACCCGCTGCA 11 128 0 CTCGCCCAGC 0.971091 -173 CGGCCTCGGCCCCCGCCGAGGCCGCTGACCG 11 147 0 CCCGCCGAGG 0.596275 -154 CGCAGGCCCGCATCGCCGAGCCTGTAGATAC 11 184 1 CTCGCCGAGC 0.982216 -117 GAGCCGCTGTCTTCGCCGAGCCTTTAGTTAT 11 245 0 CTCGCCGAGC 0.982346 -56 CGTGGAGTGGCGTCGATCAGAGCCGCTGTCT 11 264 0 CTCGATCAGA 0.286131 -37 TCTAAAGTCACATCGATGTGCAATCCGTCGT 12 90 0 CTCGATGTGC 0.840738 -165 TGGCTTGTGACACCGTTGTGACGTCACCATT 16 99 0 CCCGTTGTGA 0.838761 -202 CCGGGGCTCCCCTCGCTTTGAGAAGCCGGGC 16 179 0 CTCGCTTTGA 0.453727 -122 CCGGCCCTACCGCCGTCGCGACTATGCTGAG 17 82 1 CCCGTCGCGA 0.730953 -26 ACCGATATCACGGCCCTGTGCTGGGCTAAGC 18 258 1 CGCCCTGTGC 0.2369 -43 GATCAACCTCCGCTGTTCGATATCACCC 20 8 1 CCCGCTGTTC 0.719247 -189 GTCTGCCAACCGCCGTTCAGAAAGATCGGGG 20 36 0 CCCGTTCAGA 0.668 -161 TGTCCGCGCCCGTCGGTGATCCACTTGGGGA 20 81 0 CTCGGTGATC 0.442579 -116 CGGGTACCGTCGTCGTCGTGACCGCGGCTCC 21 39 1 CTCGTCGTGA 0.864336 -25 CTCCTCATCGCTTCGCTCTGCATCGTCACCG 23 28 1 CTCGCTCTGC 0.978446 -273 CTGCTCATCGCTTCGCTCTGCATCGTCACCG 23 81 1 CTCGCTCTGC 0.978446 -220 CTGCTCATCGCTTCGCTCTGCATCGTCACCG 23 134 1 CTCGCTCTGC 0.978446 -167 CTGCTCATCGCTTCGCTCTGCATCGTCACCG 23 187 1 CTCGCTCTGC 0.978446 -114 CTCCTCATCGCTTCGCTCTGCATCGTCACCG 23 240 1 CTCGCTCTGC 0.978446 -61 TCTGCATCGTCACCGGCGCGCATGGTCAGCG 23 256 1 CCCGGCGCGC 0.943996 -45 TACGGTGTAGCGTCGCTGACCATGCGCGCCG 23 269 0 CTCGCTGACC 0.729596 -32 CGCGCCGCACTGCCCGCGGGTAT 24 3 1 CCCGCACTGC 0.697365 -272 CCGGTGACTCCCTCGGCGAGCGGCATGGCCT 24 41 0 CTCGGCGAGC 0.953302 -234 TGACGCGTAACCGCGTTGTGATCGCGAGCTG 25 228 1 CGCGTTGTGA 0.428567 -31 ACCCTCATCTTGCCGCGCGGCCG 26 83 0 CTCATCTTGC 0.0862829 -13 GCCGTGGATACATCGTTGTGCCACAGTGTTG 27 14 0 CTCGTTGTGC 0.965673 -71 TGCCAGACTCCGCCGGCGGGCCGTTGCAGAC 28 119 1 CCCGGCGGGC 0.764147 -96 GGGCGGAAAGCGTTGGTCTGCAACGGCCCGC 28 134 0 CTTGGTCTGC 0.282241 -81 GGTCGATCCCTCTCGGTGTGCTAATGCTGCG 30 12 1 TTCGGTGTGC 0.394697 -58 AGGCGCCGCTCTCCCCCGCAAGCG 31 4 1 CCCGCTCTCC 0.704979 -150 GGGACCCCCACCTCATCGTGCTCTCCCTTCG 31 38 1 CTCATCGTGC 0.626877 -116 GTACCCATCGCGCCGCGCTGCGGTGCGGGTC 32 43 1 CCCGCGCTGC 0.773513 -160 CGGTGCGGGTCATCGTCAAGCTGTGCTTGAC 32 63 1 CTCGTCAAGC 0.398872 -140 CTCCTCCTCACGCCGCTGCGCGGCGTGCATC 32 101 1 CCCGCTGCGC 0.96979 -102 CGGCGTGCATCGTCGCCGAGCTGTGTTGGAC 32 121 1 CTCGCCGAGC 0.982134 -82 CTCCTCCTCACGCCGCTGCGCGGCGTGCATC 32 159 1 CCCGCTGCGC 0.96979 -44 CGGCGTGCATCGTCGCCGAGCTAGGTTATGG 32 179 1 CTCGCCGAGC 0.982134 -24 * ********* Masking position 4 Map Score: 63.4183 Number of sites scoring better than the average of aligned sites = 15108 Number in coding regions = 14049 Number in noncoding regions = 1059 Number of orfs with sites within 600 bp upstream = 698 Fraction of orfs with sites within 600 bp upstream = 0.112111 Motif number 7 TGTCGGCCTGTGCGTGATGGCCGGTATGTTGGGA 1 15 0 TCGGTGGCGG 0.813414 -81 CAACACCGCAACCGAGCTTGTCGGCCTGTGCGTG 1 33 0 ACGGTTGCGG 0.900548 -63 GTGTTGCGATACTGGGTGGATCGGAGTCGTCAGG 1 61 1 ATGGGGACGG 0.655164 -35 CGTTCATACCGCCGAGGTGGTCGGCACCGTAACG 6 53 0 GCGGTGGCGG 0.99059 -104 TTTGGTCCACGATGAGGAGTGCGGGAGTGCGTGA 6 120 1 GTGGAGTCGG 0.216071 -37 GACTGGCTGAGTGTAGGTCAACGGCGCTAGGGCG 7 12 0 GGTGTCACGG 0.601378 -87 ATGTTTAGCAGACTGGCTTGCCTCCTGCCGCGAC 8 159 1 GCTGTTGCTC 0.132325 -43 CCGTGTCGCGGTGGTTTGTTCCGGATCACCTGGT 9 96 0 GGGTGTTCGG 0.510572 -205 TGTGCCGCGAGGTGGGTGTGTCGGTGTGACAGAC 9 131 0 GTGGGTGCGG 0.977186 -170 CAGTGTCGGTGTTGTGTGTGCCGCGAGGTGGGTG 9 147 0 GTGGGTGCGC 0.93686 -154 AGTACGCCCAGGTGTGGGTTTCGCCATCCGGGAA 11 61 0 GTGGGTTCGC 0.592659 -240 TCTGCAGCGGGTGCTGGGCGACGGTCAGCGGCCT 11 126 1 GGCGGCGCGG 0.889681 -175 GCCTTTAGTTATCGTGCTCGGCGGCACTCGCCGT 11 223 0 ACGGTCGCGG 0.951952 -78 GTCGATCAGAGCCGCTGTCTTCGCCGAGCCTTTA 11 250 0 GCGTTCTCGC 0.409383 -51 TGTGACTTTAGACGGTGTCAACGCCGTCAGCACA 12 109 1 GCGTTCACGC 0.548591 -146 CGATACCCTTGTTGATGTGGCCGGACCGGATAAA 12 183 1 GTGTTGGCGG 0.892848 -72 CGTCACCCGCGTCGGGTTTTCCGGCGCCTTATCC 12 222 0 GCGGTTTCGG 0.856332 -33 CCGCCCCGAGTGCGACGGGGTAGTCAAC 14 5 1 CCGGGCGCGG 0.956995 -83 CCCATGGGACGATGATCGTGACGGAAGCCGGTAT 14 42 1 GTGTGTGCGG 0.867935 -46 TTAGCGTAAAGCCTGGGTTAGCGGTTCATCCTG 15 10 0 GCTGTTACGG 0.45227 -87 TTTGGAAACGGCCCGGTGCGGCGGGGCTCATGTT 16 67 0 GCCGGCGCGG 0.906183 -234 GGCTGGGATCGGTGGGGTGAGCGCCCGGCTTCTC 16 157 1 GTGGTGACGC 0.763834 -144 TTCTCAAAGCGAGGGGAGCCCCGGGACTCTTACC 16 186 1 GGGGGCCCGG 0.832047 -115 ACTCTTACCGGCCGAAGGCGGCGGGTGTCACTGA 16 211 1 GCGAGCGCGG 0.796836 -90 CCCGCGGTCTGGTTGGCTGGGCTGCCCGCGGTGG 17 20 1 GTTGTGGCTG 0.2823 -88 GCTGCCCGCGGTGGTGTTGACCGGTGTGCCGACC 17 40 1 GGGGTGACGG 0.937938 -68 TAGTCGCGACGGCGGTAGGGCCGGCACCGCCGGG 17 72 0 GCGTGGGCGG 0.956643 -36 GTGGGTCGTGGTTGGCGACTTGTACAGC 18 5 1 GCGGTTGCGA 0.581047 -296 GTGCTTTCAGGTGGAGTTCAACGGTGTCGGCGTT 18 110 0 GGGGTCACGG 0.950227 -191 GGCGTGATCAAACGTGTGTGGCGCCCCACGGTGT 18 173 0 ACGGGTGCGC 0.810777 -128 GTAACGATTTGAGGGTAGTGACGGTGTCGGTGGG 18 211 0 GGGTGTGCGG 0.91408 -90 GGCCATGCAAATTGAGTGTGACTGCGGCGGCCGG 19 26 1 ATGGGTGCTG 0.369049 -48 TGTGACTGCGGCGGCCGGCGACGGTAGCGGCATG 19 42 1 GGGCGCGCGG 0.811324 -32 CCCTGGCCACGATGGGCTGGTCGGATCAAAGGCA 20 145 1 GTGGTGGCGG 0.981919 -52 CGCACTGCCCGCGGGTATCACCGGTAGGCCATGC 24 16 1 GGGTTCACGG 0.744283 -259 GAGGGAGTCACCGGCGAGGGTCGCGACACCCAGT 24 58 1 CGGGGGGCGC 0.822783 -217 GTCGTCGCCGACGGGGCGGGACTGGGTGTCGCGA 24 78 0 AGGGGGGCTG 0.621186 -197 TCCGGGTGAGGTCGAGGTCGTCGCCGACGGGGCG 24 94 0 GCGGTCGCGC 0.978756 -181 AAGCGCCAGTGTTGCGGCGAGCGGAAGCTTTGGT 25 90 1 GTGGCGACGG 0.417331 -169 CTGCGAGCCGAAGTTGATCGCCGGCCGCACCAAA 25 118 0 AGTGTCGCGG 0.565929 -141 GGCGGGATGTGCTGTGAGCGCCGCACCACCAGCG 25 162 1 GTGGGCGCGC 0.946091 -97 CAGAATCGCACGGGCGAGGGGCGCCGGATGCGAG 26 28 0 CGGGGGGCGC 0.835302 -68 GCCCGCGCGAATCGGGGTCGACGGCTGGCCGAGT 28 161 1 ACGGTCGCGG 0.951952 -54 CGCCGGACAGCACGCGTTCGACGGTAGCACTCGG 28 189 0 CCGGTCGCGG 0.942174 -26 GCCGCTTGCGGGGGAGAGCGGCGCCT 31 3 0 GGGGGCGCGC 0.980442 -151 GCGACAGGCCTAGGATGTCGTCGGGCACAATCTG 31 125 1 TGGTTCGCGG 0.413714 -29 TCATCGTCAAGCTGTGCTTGACTGCTCGGCTCCT 32 72 1 GTGGTTGCTG 0.74189 -131 TCGTCGCCGAGCTGTGTTGGACTGCTCGGCTCCT 32 130 1 GTGGTGGCTG 0.832726 -73 * ** * *** *** Masking position 12 Map Score: 63.0128 Number of sites scoring better than the average of aligned sites = 38209 Number in coding regions = 36194 Number in noncoding regions = 2015 Number of orfs with sites within 600 bp upstream = 1024 Fraction of orfs with sites within 600 bp upstream = 0.164472 Motif number 8 TCGGTTGTCGGACTTGACCTA 5 1 1 TGGTTGTCGG 0.429602 -63 GGCCGATACATGGGCGGCCTACGAGGTGG 6 9 0 TGGCGGCCTA 0.406418 -148 GCCGACCACCTCGGCGGTATGAACGCGCTGC 6 62 1 TGGCGGTATG 0.348373 -95 GGAACGCCGACTGGCTGAGTGTAGGTCAACG 7 23 0 CGGCTGAGTG 0.638815 -76 TCGGATGGTCGCGGCAGGAGGCAAGCCAGTC 8 169 0 GGGCAGGAGG 0.525345 -33 GCTTTTGCGTCTGGTGGGCGATAGGCCGGCA 9 217 1 CGGTGGGCGA 0.708151 -84 TAGCCGCAATCCGGCGTACGGTCGTCTTC 10 46 1 CGGCGTACGG 0.759683 -19 AACCCACACCTGGGCGTACTGGCGTGCGCCA 11 75 1 TGGCGTACTG 0.411277 -226 CGCTGCAGATCAGGCAGCATGGCCTGCAATG 11 104 0 CGGCAGCATG 0.587456 -197 GTGGGGCCGGTGGGTAGACGGCGACAGCGTT 12 146 0 TGGTAGACGG 0.651866 -109 GCGTAAAGCCTGGGTTAGCGGTTCATCCTG 15 10 0 TGGTTAGCGG 0.410665 -87 CGGACGGTCTTGGGTTGGCTGGCCCCGACCG 15 47 0 TGGTTGGCTG 0.815666 -50 GCGGCTGGGATCGGTGGGGTGAGCGCCCGGC 16 155 1 TGGTGGGGTG 0.733711 -146 GGGACTCTTACCGGCCGAAGGCGGCGGGTGT 16 208 1 CGGCCGAAGG 0.615814 -93 GTCACTGATCTAGGCTGACGGCCAGTGGTTG 16 237 1 TGGCTGACGG 0.886499 -64 AACCAGACCGCGGGTAGGCGCGG 17 3 0 CGGTAGGCGC 0.375593 -105 TACCCGCGGTCTGGTTGGCTGGGCTGCCCGC 17 18 1 CGGTTGGCTG 0.901677 -90 GCGCCGGGGACGGGCAGCGGGTCGTGTGCGC 18 58 1 CGGCAGCGGG 0.786485 -243 AGTGACGGTGTCGGTGGGTTGTGGCGTGATC 18 198 0 TGGTGGGTTG 0.298869 -103 GAGTGTGACTGCGGCGGCCGGCGACGGTAGC 19 39 1 GGGCGGCCGG 0.664403 -35 TACCCGGTTACCGGCGGCCGGTAGACGGATG 21 14 0 CGGCGGCCGG 0.512331 -50 GGTGACTCCCTCGGCGAGCGGCATGGCCTAC 24 39 0 TGGCGAGCGG 0.86026 -236 GCTGCTCGCTTAGGCTGGCTGGCAGTTGCCG 24 188 1 TGGCTGGCTG 0.934488 -87 AGCGGTTTCCCAGGCGGGATGTGCTGTGAGC 25 150 1 CGGCGGGATG 0.934207 -109 CAGAATCGCACGGGCGAGGGGCGCCGGATGC 26 31 0 CGGCGAGGGG 0.750598 -65 CTGCTCGCGCCAGGTCGGCGGCCGCGCGGCA 26 65 1 CGGTCGGCGG 0.90666 -31 CCACGGCGTTTCGGCAGCCGGCGTCGGCCGT 27 38 1 TGGCAGCCGG 0.599011 -47 CAAAGCCTAATGGGTGGCCGGACGGCCGACG 27 59 0 TGGTGGCCGG 0.907902 -26 TGGCCCGGTCCGGGCTGGATGTTTGGAGGAG 28 15 0 CGGCTGGATG 0.842521 -200 AGCCCTCGATCAGGCTGGCGGCAGGCCTGGT 28 70 1 CGGCTGGCGG 0.938184 -145 CCAGACTCCGCCGGCGGGCCGTTGCAGACCA 28 121 1 CGGCGGGCCG 0.852743 -94 GACCCCGATTCGCGCGGGCGGAAAGCGTTGG 28 149 0 CCGCGGGCGG 0.864055 -66 GGGTCGACGGCTGGCCGAGTGCTACCGTCGA 28 175 1 CGGCCGAGTG 0.497136 -40 CAGTGTCATCCTGGCATGCTGCTCGCACAGT 31 87 1 CGGCATGCTG 0.634363 -67 * ********* Masking position 4 Map Score: 36.0346 Number of sites scoring better than the average of aligned sites = 17484 Number in coding regions = 16259 Number in noncoding regions = 1225 Number of orfs with sites within 600 bp upstream = 780 Fraction of orfs with sites within 600 bp upstream = 0.125281 Motif number 9 CCGGCCATCACGCACAGGCCGACAAGCTCGG 1 25 1 CGCACAGCCG 0.668026 -71 TTGACCTACTGGGTCAGGCCGACGAGCACTC 5 24 1 GGGTCAGCCG 0.310076 -40 CCTACACTCAGCCAGTCGGCGTTCCGGCCGA 7 29 1 GCCAGTCGCG 0.448394 -70 GATGCACCAGGGGCCACGTCGCGTCGCGGAC 8 111 1 GGGCCACTCG 0.41065 -91 CAGCTAACATGGGACTGTCCGCGACGCGACG 8 127 0 GGGACTGCCG 0.748427 -75 CCAAGAGGACGGCAGACGCAAAGTGAGCCAG 9 63 1 GGCAGACCAA 0.558788 -238 CGCAAAGTGAGCCAGACACCAGGTGATCCGG 9 79 1 GCCAGACCCA 0.863587 -222 GTGTCGGTGTGACAGACGCCGTGTCGCGGTG 9 117 0 GACAGACCCG 0.76141 -184 CCCACCTCGCGGCACACACAACACCGACACT 9 149 1 GGCACACCAA 0.410287 -152 TAGCGTCGCTGGCAGAGTCCGACGAAAGGAT 9 272 1 GGCAGAGCCG 0.974101 -29 GGCCTGCAATGGCGCACGCCAGTACGCCCAG 11 84 0 GGCGCACCCA 0.688267 -217 CCTCGGCCCCCGCCGAGGCCGCTGACCGTCG 11 144 0 CGCCGAGCCG 0.798545 -157 CCTCGGCGGGGGCCGAGGCCGCGAGAGCGCA 11 157 1 GGCCGAGCCG 0.980342 -144 CGTGCTCGGCGGCACTCGCCGTTTGTCGCGG 11 214 0 GGCACTCCCG 0.964912 -87 TCTGATCGACGCCACTCCACGGCATTAGGGT 11 274 1 GCCACTCACG 0.65652 -27 AGTGCGACGGGGTAGTCAACAAACCCATGGG 14 19 1 GGTAGTCACA 0.104721 -69 TGGGTTGGCTGGCCCCGACCGCTGTTAGCGT 15 37 0 GGCCCCGCCG 0.72765 -60 ACGGCGGTAGGGCCGGCACCGCCGGGTCGGC 17 67 0 GGCCGGCCCG 0.971678 -41 ACGACCCGCTGCCCGTCCCCGGCGCGACCTA 18 52 0 GCCCGTCCCG 0.956713 -249 CCGTGCGAAACGCCGACACCGTTGAACTCCA 18 102 1 CGCCGACCCG 0.926866 -199 CAATTTGCATGGCCGACAACAGTTTGGCG 19 9 0 GGCCGACACA 0.845758 -65 TGACTGCGGCGGCCGGCGACGGTAGCGGCAT 19 44 1 GGCCGGCACG 0.878406 -30 AACGGCGGTTGGCAGACAACAGGGTCAATGG 20 50 1 GGCAGACACA 0.80391 -147 GGTAGGCCATGCCGCTCGCCGAGGGAGTCAC 24 38 1 GCCGCTCCCG 0.652037 -237 CGCTCGCCGAGGGAGTCACCGGCGAGGGTCG 24 50 1 GGGAGTCCCG 0.934018 -225 GGCGAGGGTCGCGACACCCAGTCCCGCCCCG 24 70 1 GCGACACCAG 0.249252 -205 GTGAGGTCGAGGTCGTCGCCGACGGGGCGGG 24 92 0 GGTCGTCCCG 0.787896 -183 TAGGCTGGCTGGCAGTTGCCGCGAACGGAAC 24 198 1 GGCAGTTCCG 0.62783 -77 GTGGCCGGACGGCCGACGCCGGCTGCCGAAA 27 46 0 GGCCGACCCG 0.991886 -39 ACTGGGTTTTGGCCCGGTCCGGGCTGGATGT 28 24 0 GGCCCGGCCG 0.877466 -191 CGTCGTAAATGCCAGACTCCGCCGGCGGGCC 28 110 1 GCCAGACCCG 0.970193 -105 CGACGACGAAGGGAGAGCACGATGAGGTGGG 31 44 0 GGGAGAGACG 0.695511 -110 GTGACTGCGCGGGCGACGACGAAGGGAGAGC 31 57 0 GGGCGACACG 0.886972 -97 GACAGATTGTGCCCGACGACATCCTAGGCCT 31 130 0 GCCCGACACA 0.640649 -24 ******* *** Masking position 10 Map Score: 42.1995 Number of sites scoring better than the average of aligned sites = 21633 Number in coding regions = 20384 Number in noncoding regions = 1249 Number of orfs with sites within 600 bp upstream = 790 Fraction of orfs with sites within 600 bp upstream = 0.126887 Motif number 10 GCCCACCAGACGCAAAAGCTCTCGACACGC 9 206 0 CGCAAAAGCT 0.833838 -95 GTACTTGCTTTGCAAAGCCTGTCGCC 11 7 0 TGCAAAGCCT 0.934141 -294 AGGCCCGCATCGCCGAGCCTGTAGATACCG 11 187 1 CGCCGAGCCT 0.976035 -114 CCGCTGTCTTCGCCGAGCCTTTAGTTATCG 11 243 0 CGCCGAGCCT 0.976035 -58 CCGCTGTTAGCGTAAAGCCTGGGTTAGCGG 15 20 0 CGTAAAGCCT 0.934141 -77 AAGATGATCACGCAAAGGCTTAGGAATAAC 24 136 1 CGCAAAGGCT 0.97823 -139 GACCGCAAAGCCTAATGGGTGGC 27 72 0 CGCAAAGCCT 0.992189 -13 CTGTGGGTATCCCAAAGCCTAGCGCTGCGC 29 15 0 CCCAAAGCCT 0.954591 -55 ********** Masking position 6 Map Score: 9.12293 Number of sites scoring better than the average of aligned sites = 218 Number in coding regions = 192 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 11 AGGCCGACAAGCTCGGTTGCGGTGTTGCGA 1 40 1 GCTCGGTTGC 0.960172 -56 AAACGGCTCGGTTCCGGGTGCCGAC 4 23 0 GCTCGGTTCC 0.669124 -15 AACGATGAAAGCAGGTTTGCG 7 88 1 GCAGGTTTGC 0.784222 -11 TTGGCGTTGAGCAGTATTGCCGGCACTAGG 9 31 0 GCAGTATTGC 0.805797 -270 GGCCGCACGATAGCGAATCGGCGT 10 5 1 GCACGATAGC 0.775656 -60 ACGACCGTACGCCGGATTGCGGCTATTCCC 10 41 0 GCCGGATTGC 0.785174 -24 GGTCTGGTTGGCTGGGCTGCCCGCGGTGGT 17 25 1 GCTGGGCTGC 0.755084 -83 TGATAAGGCAGCACGATTGGTTATTCCTAA 24 155 0 GCACGATTGG 0.946014 -120 CGACGCCCATGCACGATTGGCCAGCTTACT 24 245 0 GCACGATTGG 0.946014 -30 ATCCCCCGCGACACGGTTGCGATGCGTTCG 25 19 1 ACACGGTTGC 0.819438 -240 TCGTTGTGCCACAGTGTTGGCC 27 3 0 ACAGTGTTGG 0.475541 -82 GCTGCGCTTCGCACTGTAGGGCCTGTGGGC 30 37 1 GCACTGTAGG 0.625456 -33 GGGCCTGTGGGCAGAATTGGTAGCC 30 55 1 GCAGAATTGG 0.547975 -15 GACGGCGGGGGCTCGGGTGGTACCCATCGC 32 24 1 GCTCGGGTGG 0.755386 -179 TCGTCGCCGAGCTGTGTTGGACTGCTCGGC 32 130 1 GCTGTGTTGG 0.828116 -73 ********** Masking position 2 Map Score: 5.94666 Number of sites scoring better than the average of aligned sites = 2389 Number in coding regions = 2158 Number in noncoding regions = 231 Number of orfs with sites within 600 bp upstream = 207 Fraction of orfs with sites within 600 bp upstream = 0.0332477 Motif number 12 CCGCGGTCATGGCAGCTGACCAGCGCG 3 43 1 GGCAGCTACC 0.495988 -17 GCTCGGTTCCGGGTGCCGACCGGTAATCGTT 4 12 0 GGGTGCCACC 0.858257 -26 TCGAGTGCTCGTCGGCCTGACCCAGTAGGTC 5 26 0 GTCGGCCGAC 0.821568 -38 ATCGGCCTTGGTGAACCGGCCGTTACGGTGC 6 33 1 GTGAACCGCC 0.726931 -124 AGGCAAGCCAGTCTGCTAAACATGCAGCTAA 8 151 0 GTCTGCTAAC 0.587428 -51 CTCACTTTGCGTCTGCCGTCCTCTTGGGGTT 9 59 0 GTCTGCCTCC 0.947008 -242 CAGACGCAAAGTGAGCCAGACACCAGGTGAT 9 75 1 GTGAGCCGAC 0.823048 -226 GGGTGTGTCGGTGTGACAGACGCCGTGTCGC 9 121 0 GTGTGACGAC 0.420957 -180 TTTCGTCGGACTCTGCCAGCGACGCTACGCG 9 268 0 CTCTGCCGCG 0.727735 -33 CGCTGTCGCCGTCTACCCACCGGCCCCACGC 12 148 1 GTCTACCACC 0.790865 -107 AGCGGTCGGGGCCAGCCAACCCAAGACCGTC 15 45 1 GCCAGCCACC 0.822305 -52 TGGTTGGCTGGGCTGCCCGCGGTGGTGTTGA 17 29 1 GGCTGCCGCG 0.871477 -79 GTGTTGACCGGTGTGCCGACCCGGCGGTGCC 17 53 1 GTGTGCCACC 0.95516 -55 TGCAAATTGAGTGTGACTGCGGCGGCCGGCG 19 31 1 GTGTGACGCG 0.471814 -43 TGACCCTGTTGTCTGCCAACCGCCGTTCAGA 20 46 0 GTCTGCCACC 0.974684 -151 GCGCATCCGTCTACCGGCCGCCGGTAACC 21 9 1 GTCTACCGCC 0.922751 -55 CGCGGCAACTGCCAGCCAGCCTAAGCGAGCA 24 190 0 GCCAGCCGCC 0.933336 -85 AGATAATCCAGTAAGCTGGCCAATCGTGCAT 24 236 1 GTAAGCTGCC 0.366911 -39 GCGAGTCTGTGTCTGCTCGCCG 26 2 0 GTCTGCTGCC 0.962159 -94 GCGATTCTGTGTCTGCTCGCGCCAGGTCGGC 26 53 1 GTCTGCTGCG 0.846504 -43 GGCAGCCGGCGTCGGCCGTCCGGCCACCCAT 27 50 1 GTCGGCCTCC 0.858742 -35 GACGGTAGCACTCGGCCAGCCGTCGACCCCG 28 173 0 CTCGGCCGCC 0.806161 -42 ACCGTCGAACGCGTGCTGTCCGGCGGG 28 198 1 GCGTGCTTCC 0.368262 -17 ACCGACAGATTGTGCCCGACGACATCCTAG 31 134 0 TTGTGCCGAC 0.302423 -20 ******* *** Masking position 6 Map Score: 25.2278 Number of sites scoring better than the average of aligned sites = 8243 Number in coding regions = 7578 Number in noncoding regions = 665 Number of orfs with sites within 600 bp upstream = 497 Fraction of orfs with sites within 600 bp upstream = 0.0798265 Motif number 13 GCCGACAAGCTCGGTTGCGGTGTTGCGATA 1 42 1 TCGGTTGCGG 0.950481 -54 AAACGGCTCGGTTCCGGGTGCCGACCG 4 21 0 TCGGTTCCGG 0.651352 -17 CTCGACCATTAGGGTAGGGGCC 5 52 1 AGGGTAGGGG 0.78264 -12 CCTTGCGGATACGGTCTCGATGAGGCAATA 8 62 0 ACGGTCTCGA 0.816385 -140 AAGCTATCGGATGGTCGCGGCAGGAGGCAA 8 176 0 ATGGTCGCGG 0.897656 -26 CACATCAACAAGGGTATCGGTTTGCGTGGG 12 172 0 AGGGTATCGG 0.907812 -83 TGCTGCACGGACGGTCTTGGGTTGGCTGGC 15 55 0 ACGGTCTTGG 0.864448 -42 TGTCCGCGGTAGGGACGCGGCGGCTGGGAT 16 136 1 AGGGACGCGG 0.889666 -165 GTGGGTCGTGGTTGGCGACTT 18 2 1 TGGGTCGTGG 0.914478 -299 GTGGAGTTCAACGGTGTCGGCGTTTCGCAC 18 104 0 ACGGTGTCGG 0.798117 -197 ACGGTGTCGGTGGGTTGTGGCGTGATCAAA 18 195 0 TGGGTTGTGG 0.851887 -106 TAACGATTTGAGGGTAGTGACGGTGTCGGT 18 214 0 AGGGTAGTGA 0.647041 -87 GCGGCCGGCGACGGTAGCGGCATGATGGAG 19 52 1 ACGGTAGCGG 0.970466 -22 TGGATCACCGACGGGCGCGGACAAATGGCC 20 89 1 ACGGGCGCGG 0.914163 -108 GTCACCGGCGAGGGTCGCGACACCCAGTCC 24 64 1 AGGGTCGCGA 0.94921 -211 CCCCCGCGACACGGTTGCGATGCGTTCGCG 25 21 1 ACGGTTGCGA 0.899573 -238 AGGAAGCGCCAGTGTTGCGGCGAGCGGAAG 25 87 1 AGTGTTGCGG 0.716086 -172 CTCTCAATACTGGGTTTTGGCCCGGTCCGG 28 33 0 TGGGTTTTGG 0.605613 -182 ********** Masking position 4 Map Score: 17.2219 Number of sites scoring better than the average of aligned sites = 3831 Number in coding regions = 3549 Number in noncoding regions = 282 Number of orfs with sites within 600 bp upstream = 273 Fraction of orfs with sites within 600 bp upstream = 0.0438484 Motif number 14 TGCATCGGTCAGGACGGTGTAGCGGCCTTG 8 87 0 AGGACGGTGT 0.599749 -115 GTGTGCCGCGAGGTGGGTGTGTCGGTGTGA 9 136 0 AGGTGGGTGT 0.947152 -165 CAGTACGCCCAGGTGTGGGTTTCGCCATCC 11 66 0 AGGTGTGGGT 0.957079 -235 ACGCTAACAGCGGTCGGGGCCAGCCAACCC 15 37 1 CGGTCGGGGC 0.899355 -60 CGGTGCTTTCAGGTGGAGTTCAACGGTGTC 18 116 0 AGGTGGAGTT 0.713475 -185 CCGTTCAGAAAGATCGGGGTGATATCGAAC 20 25 0 AGATCGGGGT 0.934828 -172 CACCCGAACTCGGTCGGGTTCGCTTGCGCT 22 20 0 CGGTCGGGTT 0.878527 -32 GTTCCGGGTGAGGTCGAGGTCGTCGCCGAC 24 100 0 AGGTCGAGGT 0.928239 -175 CCGCGCGGCAAGATGAGGGT 26 86 1 AGATGAGGGT 0.660807 -10 TTAACTTTTTAGCTGTGGGTATCCCAAAGC 29 27 0 AGCTGTGGGT 0.74276 -43 GAGCACGATGAGGTGGGGGTCCCTGCCGCT 31 31 0 AGGTGGGGGT 0.992307 -123 CGCCGCGCTGCGGTGCGGGTCATCGTCAAG 32 53 1 CGGTGCGGGT 0.912876 -150 ********** Masking position 2 Map Score: 6.63176 Number of sites scoring better than the average of aligned sites = 1356 Number in coding regions = 1250 Number in noncoding regions = 106 Number of orfs with sites within 600 bp upstream = 99 Fraction of orfs with sites within 600 bp upstream = 0.0159011 Motif number 15 ATACCGGCCATCACGCACAGGCCGACAAGC 1 22 1 TCACGCACAG 0.966233 -74 AAAGGTCCCTTTTCGCACGGCGTGTCGAGA 9 187 1 TTTCGCACGG 0.92564 -114 CGTAGCTGCTGCACGGACGGTCTTGGGTTG 15 61 0 GCACGGACGG 0.845415 -36 GGTGTCGGCGTTTCGCACGGTGCACTGAAA 18 92 0 TTTCGCACGG 0.92564 -209 ATCGGGGTGATATCGAACAGCGGAGGTTGA 20 13 0 TATCGAACAG 0.523021 -184 ACCAAGATGATCACGCAAAGGCTTAGGAAT 24 133 1 TCACGCAAAG 0.714284 -142 GCTAAGGATGGAACGCACGGCATCTTCTGA 25 201 1 GAACGCACGG 0.936357 -58 GCAGACACAGAATCGCACGGGCGAGGGGCG 26 39 0 AATCGCACGG 0.787374 -57 CTGGCATGCTGCTCGCACAGTGGTTCGGGC 31 97 1 GCTCGCACAG 0.959354 -57 AGCCGAGCAGTCAAGCACAGCTTGACGATG 32 73 0 TCAAGCACAG 0.714284 -130 ********** Masking position 7 Map Score: 3.0535 Number of sites scoring better than the average of aligned sites = 1002 Number in coding regions = 892 Number in noncoding regions = 110 Number of orfs with sites within 600 bp upstream = 105 Fraction of orfs with sites within 600 bp upstream = 0.0168648