AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00010_mtub_reg_300.orf -o00010_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 fba 95 fba #2 Rv0458 67 hypothetical protein Rv0458 #3 Rv0460 59 hypothetical protein Rv0460 #4 Rv0461 37 hypothetical protein Rv0461 #5 Rv0462 63 hypothetical protein Rv0462 #6 Rv0488 300 hypothetical protein Rv0488 #7 gpm 156 gpm #8 adhB 98 adhB #9 Rv0767c 201 hypothetical protein Rv0767c #10 lpdB 300 lpdB #11 pdc 64 pdc #12 pgi 300 pgi #13 Rv1019 254 hypothetical protein Rv1019 #14 mfd 58 mfd #15 lpqU 87 lpqU #16 eno 96 eno #17 gap 300 gap #18 Rv1615 300 hypothetical protein Rv1615 #19 pykA 107 pykA #20 Rv1861 300 hypothetical protein Rv1861 #21 adhA 73 adhA #22 hspX 196 hspX #23 Rv2136c 63 hypothetical protein Rv2136c #24 aceE 51 aceE #25 adhE2 300 adhE2 #26 Rv2421c 274 hypothetical protein Rv2421c #27 pdhA 258 pdhA #28 scoA 82 scoA #29 fadD35 115 fadD35 #30 pfkA 95 pfkA #31 gatC 84 gatC #32 fecB 214 fecB #33 adhC 69 adhC #34 pgmA 69 pgmA #35 entD 153 entD #36 lpdA 202 lpdA Motif number 1 CCGACAAGCTCGGTTGCGGTGTTGCGATACT 1 43 1 CGGTGCGGTG 0.819424 -53 ATACAGCTCACACTACCGCCGGGGCCACAAT 2 18 0 CACACCGCCG 0.897563 -50 ACCGTGATCCCCCTTCCGCGGTCATGGCAGC 3 28 1 CCCTCCGCGG 0.79943 -32 GTTAGGTCGAGCCCGACGACGATGCAGAGCG 6 39 1 GCCGACGACG 0.867719 -262 GTTAGGTCGAGCCCGACGACGATGCAGAGCG 6 97 1 GCCGACGACG 0.867719 -204 AGGTCAAGACGCCCGCCGGTGATGGGCTGGT 6 157 1 GCCGCCGGTG 0.974002 -144 GCCGGTGATGGGCTGGTGGCGCTCACCCCGT 6 171 1 GGCGGTGGCG 0.517482 -130 ATTTCTGAGTCCGGAACGGGGTGAGCGCCAC 6 186 0 CCGAACGGGG 0.797819 -115 TGATGGTTTAGCGTTCCGCTGTGCCTCTTCA 6 258 1 GCGTCCGCTG 0.794153 -43 CCACCTCGTAGGCCGCCCATGTATCGGCCTT 7 11 1 GGCGCCCATG 0.70244 -146 GGTGAACCGGCCGTTACGGTGCCGACCACCT 7 42 1 CCGTACGGTG 0.486898 -115 ACGGTGCCGACCACCTCGGCGGTATGAACGC 7 57 1 CCACTCGGCG 0.591482 -100 GCGCTGCGCAGCGGACCGAGGAGAATTCGGG 7 86 1 GCGACCGAGG 0.938904 -71 ACGCCCTAGCGCCGTTGACCTACA 8 4 1 CCCAGCGCCG 0.984609 -95 CCTACACTCAGCCAGTCGGCGTTCCGGCCGA 8 29 1 GCCGTCGGCG 0.986072 -70 TACGAGTGGTCCCTAGCCTCGGCCGGAACGC 8 47 0 CCCAGCCTCG 0.584896 -52 CTTGCGGATACGGTCTCGATGAGGCAATATC 9 60 0 CGGCTCGATG 0.489769 -142 GCTACACCGTCCTGACCGATGCACCAGGGGC 9 94 1 CCTACCGATG 0.806425 -108 GGGACTGTCCGCGACGCGACGTGGCCCCTGG 9 117 0 GCGCGCGACG 0.948919 -85 GGTGAGAAGGACCGGCCGGCGT 10 2 0 ACCGCCGGCG 0.749112 -299 GTGACAGACGCCGTGTCGCGGTGGTTTGTTC 10 109 0 CCGGTCGCGG 0.882853 -192 CTTTATGTCTCAGTGTCGGTGTTGTGTGTGC 10 160 0 CAGGTCGGTG 0.684281 -141 CGCTACGCGCGCCTAGCGCCGGTGAGCCGTG 10 246 0 GCCAGCGCCG 0.983538 -55 CGCTAGGCGCGCGTAGCGTCGCTGGCAGAGT 10 259 1 GCGAGCGTCG 0.836212 -42 CCGCACGATAGCGAATCGGCGTCCAGTCGGG 11 13 1 GCGATCGGCG 0.983814 -52 GGGAATAGCCGCAATCCGGCGTACGGTCGTC 11 41 1 GCATCCGGCG 0.717523 -24 GTACCAAGCGGCGCAACGGCGGTTCAACTTC 12 33 1 GCGAACGGCG 0.944034 -268 GTGTGGGTTTCGCCATCCGGGAAGTTGAACC 12 53 0 CGCATCCGGG 0.562159 -248 CCACACCTGGGCGTACTGGCGTGCGCCATTG 12 78 1 GCGACTGGCG 0.687466 -223 TGCAGCGGGTGCTGGGCGACGGTCAGCGGCC 12 128 1 GCTGGCGACG 0.940437 -173 CGGCCTCGGCCCCCGCCGAGGCCGCTGACCG 12 147 0 CCCGCCGAGG 0.505682 -154 TCGGCGGGGGCCGAGGCCGCGAGAGCGCAGG 12 159 1 CCGGGCCGCG 0.961772 -142 GAGCGCAGGCCCGCATCGCCGAGCCTGTAGA 12 181 1 CCGATCGCCG 0.952656 -120 GACAAACGGCGAGTGCCGCCGAGCACGATAA 12 218 1 GAGGCCGCCG 0.911621 -83 TGGCGTCGATCAGAGCCGCTGTCTTCGCCGA 12 257 0 CAGGCCGCTG 0.729967 -44 TCTGATCGACGCCACTCCACGGCATTAGGGT 12 274 1 GCCCTCCACG 0.636277 -27 CAGGTTCGAGTCCTGGCGACGGAGCTTCAAG 13 19 0 TCCGGCGACG 0.606955 -236 GCACAGTCAACGCTGTCGCCGTCTACCCACC 13 138 1 CGCGTCGCCG 0.921139 -117 CGTCTACCCACCGGCCCCACGCAAACCGATA 13 157 1 CCGCCCCACG 0.867576 -98 CCTGGCGCGCGTCACCCGCGTCGGGTTTTC 13 235 0 CGTACCCGCG 0.681808 -20 CGGGCGGGGAAGCCGGGCCCAATGTTG 14 7 1 GGGAGCCGGG 0.830845 -52 GGCCATTCTAGGGCGCCGAGGTTAGTCAACA 14 33 0 GGGGCCGAGG 0.879346 -26 ACTACCCCGTCGCACTCGGGGCGG 15 4 0 CGCCTCGGGG 0.721137 -84 AGGATGAACCGCTAACCCAGGCTTTACGCTA 16 12 1 GCTACCCAGG 0.489402 -85 GTTGGCTGGCCCCGACCGCTGTTAGCGTAAA 16 34 0 CCCACCGCTG 0.935494 -63 TGGAAACGGCCCGGTGCGGCGGGGCTCATGT 17 68 0 CCGTGCGGCG 0.969522 -233 GCCGCCGCGTCCCTACCGCGGACATTGCGCT 17 129 0 CCCACCGCGG 0.948683 -172 CCCCACCGATCCCAGCCGCCGCGTCCCTACC 17 143 0 CCCGCCGCCG 0.945677 -158 CCCTCGCTTTGAGAAGCCGGGCGCTCACCCC 17 170 0 GAGAGCCGGG 0.512008 -131 CTCAAAGCGAGGGGAGCCCCGGGACTCTTAC 17 188 1 GGGAGCCCCG 0.893589 -113 TCTTACCGGCCGAAGGCGGCGGGTGTCACTG 17 213 1 CGAGGCGGCG 0.867939 -88 CTCCAATCCCGCACAGCCGCGACCAACTCGG 18 20 1 GCAAGCCGCG 0.721609 -281 GCGACAGCTGCCTGACCGGCGGTTTTGTTCC 18 50 0 CCTACCGGCG 0.957593 -251 GAGAGTTGTGGCCGTGCGATGTGCCCGACCC 18 126 1 GCCTGCGATG 0.720259 -175 TCAAATTGGTGCGCACCGAGGGTCGGGCACA 18 145 0 GCGACCGAGG 0.938846 -156 TTGTGAGGCGGGCAACCGGTGCACCTCCGCT 18 200 0 GGCACCGGTG 0.956418 -101 TCCTGCTCTGCCGCGCCGATGTTGGGAACGC 18 280 1 CCGGCCGATG 0.713242 -21 CCGCGCCTACCCGCGGTCTGGTTGG 19 5 1 GCCACCCGCG 0.979397 -103 TGGTTGGCTGGGCTGCCCGCGGTGGTGTTGA 19 29 1 GGCGCCCGCG 0.967299 -79 GACCGGTGTGCCGACCCGGCGGTGCCGGCCC 19 58 1 CCGCCCGGCG 0.98659 -50 GCGGTGCCGGCCCTACCGCCGTCGCGACTAT 19 76 1 CCCACCGCCG 0.987282 -32 CTGTACAAGTCGCCAACCACGACCCAC 20 7 0 CGCAACCACG 0.409925 -294 ACCCGCTGCCCGTCCCCGGCGCGACCTATGG 20 49 0 CGTCCCGGCG 0.854815 -252 TGGAGTTCAACGGTGTCGGCGTTTCGCACGG 20 102 0 CGGGTCGGCG 0.969017 -199 AAACGTGTGTGGCGCCCCACGGTGTTTTCGT 20 167 0 GGCCCCCACG 0.738248 -134 AGGGTAGTGACGGTGTCGGTGGGTTGTGGCG 20 203 0 CGGGTCGGTG 0.908756 -98 GTGTGACTGCGGCGGCCGGCGACGGTAGCGG 21 41 1 GGCGCCGGCG 0.953342 -33 CCTGTTGTCTGCCAACCGCCGTTCAGAAAGA 22 42 0 GCCACCGCCG 0.986393 -155 ATTTGTCCGCGCCCGTCGGTGATCCACTTGG 22 84 0 GCCGTCGGTG 0.943124 -113 ACAGAAGTCCCCGAAGCGCGGGCCATTTGTC 22 108 0 CCGAGCGCGG 0.942423 -89 CTGTCCCTAGCCCTGGCCACGATGGGCTGGT 22 135 1 CCCGGCCACG 0.935778 -62 TTGATGCCTCCTAATCGATGGAAACGGATG 22 177 0 CCTATCGATG 0.569251 -20 GACGGTACCCGGTTACCGGCGGCCGGTAGAC 23 19 0 GGTACCGGCG 0.958972 -45 GCCGGTAACCGGGTACCGTCGTCGTCGTGAC 23 30 1 GGGACCGTCG 0.758821 -34 CGCCGGAGCCGCGGTCACGACGA 23 51 0 CCGAGCCGCG 0.94667 -13 CGGTCGGGTTCGCTTGCGCTGTTTGAGTT 24 9 0 CGCTGCGCTG 0.630299 -43 ACCGAGTTCGGGTGATCCGCGAGGGT 24 36 1 GGTATCCGCG 0.658082 -16 AAGCGATGAGGAGGAGCGGCGCAGATGAGT 25 10 0 GAGAGCGGCG 0.945164 -291 ACGATGCAGAGCGAAGCGATGAGGAGGAGCG 25 23 0 GCGAGCGATG 0.928263 -278 CGCTCTGCATCGTCACCGGCGCGACTCATCT 25 41 1 CGTACCGGCG 0.747583 -260 AAGCGATGAGCAGGAGCGGCGCAGATGAGTC 25 63 0 CAGAGCGGCG 0.91884 -238 ACGATGCAGAGCGAAGCGATGAGCAGGAGCG 25 76 0 GCGAGCGATG 0.928263 -225 CGCTCTGCATCGTCACCGGCGCGACTCATCT 25 94 1 CGTACCGGCG 0.747583 -207 AAGCGATGAGCAGGAGCGGCGCAGATGAGTC 25 116 0 CAGAGCGGCG 0.91884 -185 ACGATGCAGAGCGAAGCGATGAGCAGGAGCG 25 129 0 GCGAGCGATG 0.928263 -172 CGCTCTGCATCGTCACCGGCGCGACTCATCT 25 147 1 CGTACCGGCG 0.747583 -154 AAGCGATGAGCAGGAGCGGCGCAGATGAGTC 25 169 0 CAGAGCGGCG 0.91884 -132 ACGATGCAGAGCGAAGCGATGAGCAGGAGCG 25 182 0 GCGAGCGATG 0.928263 -119 CGCTCTGCATCGTCACCGGCGCGACTCATCT 25 200 1 CGTACCGGCG 0.747583 -101 AAGCGATGAGGAGGAGCGGCGCAGATGAGTC 25 222 0 GAGAGCGGCG 0.945164 -79 ACGATGCAGAGCGAAGCGATGAGGAGGAGCG 25 235 0 GCGAGCGATG 0.928263 -66 CGCTGACCATGCGCGCCGGTGACGATGCAGA 25 256 0 GCGGCCGGTG 0.979593 -45 CGGCGCGCATGGTCAGCGACGCTACACCGTA 25 269 1 GGTAGCGACG 0.86822 -32 CGCGCCGCACTGCCCGCGGGTATCACCG 26 8 1 CACGCCCGCG 0.839384 -267 GAGCGGCATGGCCTACCGGTGATACCCGCGG 26 24 0 GCCACCGGTG 0.977379 -251 GGTAGGCCATGCCGCTCGCCGAGGGAGTCAC 26 38 1 GCCCTCGCCG 0.886225 -237 GTGTCGCGACCCTCGCCGGTGACTCCCTCGG 26 56 0 CCTGCCGGTG 0.580462 -219 CCCAGTCCCGCCCCGTCGGCGACGACCTCGA 26 86 1 CCCGTCGGCG 0.575464 -189 GGCTGGCTGGCAGTTGCCGCGAACGGAACTG 26 200 1 CAGTGCCGCG 0.516112 -75 GACTCCCAATCGACGCCCATGCACG 26 260 0 CCCATCGACG 0.95647 -15 CGCATCGCAACCGTGTCGCGGGGGATCTGCG 27 14 0 CCGGTCGCGG 0.882853 -245 GAAGCTTTGGTGCGGCCGGCGATCAACTTCG 27 113 1 TGCGCCGGCG 0.707569 -146 GCCGCACCACCAGCGCCGACGCTAAGGATGG 27 181 1 CAGGCCGACG 0.544579 -78 ATCTTCTGACGCGTAACCGCGTTGTGATCGC 27 222 1 GCGAACCGCG 0.815308 -37 AATACCATTGCCCCCGCGGTGCGTCTAGGGA 28 13 0 CCCCGCGGTG 0.92266 -70 GACACAGACTCGCATCCGGCGCCCCTCGCCC 30 20 1 CGCTCCGGCG 0.955936 -76 ATCCGGCGCCCCTCGCCCGTGCGATTCTGTG 30 33 1 CCTGCCCGTG 0.514219 -63 CATCTTGCCGCGCGGCCGCCGACCTGGCGCG 30 70 0 CGCGCCGCCG 0.503231 -26 ACGGCGTTTCGGCAGCCGGCGTCGGCCGTCC 31 40 1 GGCGCCGGCG 0.991022 -45 TGGGTTTTGGCCCGGTCCGGGCTGGATGTTT 32 22 0 CCCGTCCGGG 0.547842 -193 CTGCCGCCAGCCTGATCGAGGGCTAAGATGC 32 63 0 CCTATCGAGG 0.563336 -152 GTCTGCAACGGCCCGCCGGCGGAGTCTGGCA 32 119 0 GCCGCCGGCG 0.961333 -96 CCGCGCGAATCGGGGTCGACGGCTGGCCGAG 32 163 1 CGGGTCGACG 0.76447 -52 CCGGACAGCACGCGTTCGACGGTAGCACTCG 32 190 0 CGCTTCGACG 0.701309 -25 TCGAACGCGTGCTGTCCGGCGGG 32 202 1 GCTTCCGGCG 0.906673 -13 GTATCCCAAAGCCTAGCGCTGCGCCTCA 33 8 0 GCCAGCGCTG 0.934192 -62 TGGTCGATCCCTCTCGGTGTGCTAATGCT 34 9 1 CCCCTCGGTG 0.838733 -61 CGCTTGCGGGGGAGAGCGGCGCCT 35 4 0 GGAAGCGGCG 0.834333 -150 ACGATGAGGTGGGGGTCCCTGCCGCTTGCGG 35 26 0 GGGGTCCCTG 0.485685 -128 ACTGTGACTGCGCGGGCGACGACGAAGGGAG 35 60 0 CGCGGCGACG 0.519594 -94 TGGGTACCACCCGAGCCCCCGCCGTCTAAGC 36 19 0 CCGGCCCCCG 0.947076 -184 ATGACCCGCACCGCAGCGCGGCGCGATGGGT 36 45 0 CCGAGCGCGG 0.774529 -158 GATGCACGCCGCGCAGCGGCGTGAGGAGGAG 36 101 0 GCGAGCGGCG 0.993549 -102 GTCCAACACAGCTCGGCGACGATGCACGCCG 36 121 0 GCTGGCGACG 0.937764 -82 GATGCACGCCGCGCAGCGGCGTGAGGAGGAG 36 159 0 GCGAGCGGCG 0.993549 -44 CCATAACCTAGCTCGGCGACGATGCACGCCG 36 179 0 GCTGGCGACG 0.937764 -24 *** ******* Masking position 11 Map Score: 213.996 Number of sites scoring better than the average of aligned sites = 88044 Number in coding regions = 82745 Number in noncoding regions = 5299 Number of orfs with sites within 600 bp upstream = 1516 Fraction of orfs with sites within 600 bp upstream = 0.243495 Motif number 2 CGGCCTGTGCGTGATGGCCGGTATGTTGGG 1 16 0 GTGATGGCCG 0.42041 -80 CGGCCATCACGCACAGGCCGACAAGCTCGG 1 26 1 GCACAGGCCG 0.907703 -70 GCTCACACTACCGCCGGGGCCACAATGGCT 2 14 0 CCGCCGGGGC 0.562862 -54 TCGGTTCCGGGTGCCGACCGGTAATCGTTG 4 11 0 GTGCCGACCG 0.840091 -27 TAGGTCAAGTCCGACAACCGA 5 2 0 CCGACAACCG 0.375805 -62 GCGCAGCGCGATGAGAAGGA 6 1 1 GCGCAGCGCG 0.978866 -300 CCTTCTCATCGCGCTGCGCGCTCTGCATCG 6 58 0 GCGCTGCGCG 0.98489 -243 ATTTCTCATCGCGCTGCGCGCTCTGCATCG 6 116 0 GCGCTGCGCG 0.98489 -185 CAGCCCATCACCGGCGGGCGTCTTGACCTC 6 156 0 CCGGCGGGCG 0.992365 -145 GGGGTGAGCGCCACCAGCCCATCACCGGCG 6 170 0 CCACCAGCCC 0.769774 -131 AGTCCGGAACGGGGTGAGCGCCACCAGCCC 6 180 0 GGGGTGAGCG 0.791894 -121 GTTTAGCGTTCCGCTGTGCCTCTTCAGGTG 6 263 1 CCGCTGTGCC 0.92993 -38 CGGCCTTGGTGAACCGGCCGTTACGGTGCC 7 35 1 GAACCGGCCG 0.539911 -122 TCGGTCCGCTGCGCAGCGCGTTCATACCGC 7 75 0 GCGCAGCGCG 0.978866 -82 ATGAGGAGTGCGGGAGTGCGTGAGAGACTT 7 131 1 CGGGAGTGCG 0.759393 -26 CTAGCCTCGGCCGGAACGCCGACTGGCTGA 8 36 0 CCGGAACGCC 0.741598 -63 GAGACCGTATCCGCAAGGCCGCTACACCGT 9 74 1 CCGCAAGGCC 0.878888 -128 ATGGGACTGTCCGCGACGCGACGTGGCCCC 9 120 0 CCGCGACGCG 0.796943 -82 CCTCCTGCCGCGACCATCCGATAGCTTGGA 9 179 1 CGACCATCCG 0.319855 -23 TAGGTGAGAAGGACCGGCCGGCGT 10 5 0 GGACCGGCCG 0.567271 -296 CCGTCCTCTTGGGGTTGGCGTTGAGCAGTA 10 45 0 GGGGTTGGCG 0.643057 -256 ACCGACACACCCACCTCGCGGCACACACAA 10 140 1 CCACCTCGCG 0.772548 -161 GCTTTTGCGTCTGGTGGGCGATAGGCCGGC 10 217 1 CTGGTGGGCG 0.888688 -84 TAGCGCCGGTGAGCCGTGCCGGCCTATCGC 10 234 0 GAGCCGTGCC 0.534986 -67 CGGCTCACCGGCGCTAGGCGCGCGTAGCGT 10 248 1 GCGCTAGGCG 0.952724 -53 AGCGTCGCTGGCAGAGTCCGACGAAAGGAT 10 273 1 GCAGAGTCCG 0.613273 -28 TCGGGAATAGCCGCAATCCGGCGTACGGTC 11 39 1 CCGCAATCCG 0.72941 -26 TGCAAAGCAAGTACCAAGCGGCGCAACGGC 12 23 1 GTACCAAGCG 0.228419 -278 GTTCAACTTCCCGGATGGCGAAACCCACAC 12 54 1 CCGGATGGCG 0.818034 -247 CCTGGGCGTACTGGCGTGCGCCATTGCAGG 12 83 1 CTGGCGTGCG 0.8368 -218 TCTGCAGCGGGTGCTGGGCGACGGTCAGCG 12 126 1 GTGCTGGGCG 0.930297 -175 CCCGCCGAGGCCGCTGACCGTCGCCCAGCA 12 137 0 CCGCTGACCG 0.940992 -164 AGCGGCCTCGGCGGGGGCCGAGGCCGCGAG 12 152 1 GCGGGGGCCG 0.923679 -149 GGCCGCGAGAGCGCAGGCCCGCATCGCCGA 12 173 1 GCGCAGGCCC 0.936482 -128 ACGGCGAGTGCCGCCGAGCACGATAACTAA 12 223 1 CCGCCGAGCA 0.505206 -78 TCACATCGATGTGCAATCCGTCGTGGTGTA 13 84 0 GTGCAATCCG 0.267667 -171 CGCCGTCTACCCACCGGCCCCACGCAAACC 13 154 1 CCACCGGCCC 0.913503 -101 CCTGGCGCGCGTCACCCGCGT 13 244 0 CTGGCGCGCG 0.927721 -11 CGGGCGGGGAAGCCGGGCCCAATGT 14 6 1 GGGGAAGCCG 0.475364 -53 GGCACCTATACCGGCTTCCGTCACGATCAT 15 53 0 CCGGCTTCCG 0.740066 -35 CAGGATGAACCGCTAACCCAGGCTTTACG 16 10 1 CCGCTAACCC 0.623645 -87 GAGCCCCGCCGCACCGGGCCGTTTCCAAAT 17 72 1 GCACCGGGCC 0.960558 -229 CGGTAGGGACGCGGCGGCTGGGATCGGTGG 17 142 1 GCGGCGGCTG 0.555354 -159 TGGGATCGGTGGGGTGAGCGCCCGGCTTCT 17 160 1 GGGGTGAGCG 0.791894 -141 CTCAAAGCGAGGGGAGCCCCGGGACTCTTA 17 188 1 GGGGAGCCCC 0.516997 -113 CCGGCCGAAGGCGGCGGGTGTCACTGATCT 17 218 1 GCGGCGGGTG 0.645439 -83 GGCTAAACAACCACTGGCCGTCAGCCTAGA 17 245 0 CCACTGGCCG 0.927222 -56 TGCGGGATTGGAGGCGGGCGTT 18 3 0 GAGGCGGGCG 0.836668 -298 GAGTTGGTCGCGGCTGTGCGGGATTGGAGG 18 19 0 CGGCTGTGCG 0.8804 -282 CGGGCGACACCCGATGTGCCCGGCTCTCAG 18 80 0 CCGATGTGCC 0.501562 -221 ATGTGTCACTGCACCGGGCGACACCCGATG 18 94 0 GCACCGGGCG 0.979551 -207 TTGTGGCCGTGCGATGTGCCCGACCCTCGG 18 131 1 GCGATGTGCC 0.501563 -170 CGGAGGTGCACCGGTTGCCCGCCTCACAAC 18 202 1 CCGGTTGCCC 0.685021 -99 TGCCCGGCTGCGAGCGACCGTGTGCGCCTC 18 240 0 CGAGCGACCG 0.566534 -61 CACTCCTGCTCTGCCGCGCCGATGTTGGGA 18 277 1 CTGCCGCGCC 0.915935 -24 AACCAGACCGCGGGTAGGCGCGG 19 4 0 CGGGTAGGCG 0.770536 -104 CTGGTTGGCTGGGCTGCCCGCGGTGGTGTT 19 28 1 GGGCTGCCCG 0.543058 -80 GTGGTGTTGACCGGTGTGCCGACCCGGCGG 19 50 1 CCGGTGTGCC 0.888138 -58 CGACCCGGCGGTGCCGGCCCTACCGCCGTC 19 69 1 GTGCCGGCCC 0.886227 -39 GTGGGTCGTGGTTGGCGACTTGTACAG 20 8 1 GTGGTTGGCG 0.460919 -293 CGCACACGACCCGCTGCCCGTCCCCGGCGC 20 58 0 CCGCTGCCCG 0.923701 -243 GTCTTTCAGTGCACCGTGCGAAACGCCGAC 20 89 1 GCACCGTGCG 0.926798 -212 TCAAACGTGTGTGGCGCCCCACGGTGTTTT 20 170 0 GTGGCGCCCC 0.811034 -131 GCTTAGCCCAGCACAGGGCCGTGATATCGG 20 259 0 GCACAGGGCC 0.876477 -42 GCCCTGTGCTGGGCTAAGCCAGCGTCTGCA 20 270 1 GGGCTAAGCC 0.396838 -31 GAGTGTGACTGCGGCGGCCGGCGACGGTAG 21 39 1 GCGGCGGCCG 0.861409 -35 ACCCTGTTGTCTGCCAACCGCCGTTCAGAA 22 45 0 CTGCCAACCG 0.516963 -152 AAGTGGATCACCGACGGGCGCGGACAAATG 22 86 1 CCGACGGGCG 0.947855 -111 ACAGAAGTCCCCGAAGCGCGGGCCATTTGT 22 109 0 CCGAAGCGCG 0.778612 -88 GCCTTTGATCCGACCAGCCCATCGTGGCCA 22 148 0 CGACCAGCCC 0.367659 -49 TACCCGGTTACCGGCGGCCGGTAGACGGAT 23 15 0 CCGGCGGCCG 0.787792 -49 CCGCCGGTAACCGGGTACCGTCGTCGTCGT 23 28 1 CCGGGTACCG 0.232058 -36 ACTCATCTGCGCCGCTCCTCCTCATCGC 25 9 1 GCGCCGCTCC 0.78026 -292 CGACTCATCTGCGCCGCTCCTGCTCATCGC 25 62 1 GCGCCGCTCC 0.78026 -239 CGACTCATCTGCGCCGCTCCTGCTCATCGC 25 115 1 GCGCCGCTCC 0.78026 -186 CGACTCATCTGCGCCGCTCCTGCTCATCGC 25 168 1 GCGCCGCTCC 0.78026 -133 CGACTCATCTGCGCCGCTCCTCCTCATCGC 25 221 1 GCGCCGCTCC 0.78026 -80 TGCATCGTCACCGGCGCGCATGGTCAGCGA 25 258 1 CCGGCGCGCA 0.642277 -43 CGCGCCGCACTGCCCGCGGGTATCAC 26 7 1 GCACTGCCCG 0.901579 -268 GCGGGTATCACCGGTAGGCCATGCCGCTCG 26 26 1 CCGGTAGGCC 0.85967 -249 GTAGGCCATGCCGCTCGCCGAGGGAGTCAC 26 39 1 CCGCTCGCCG 0.520293 -236 AGGTCGTCGCCGACGGGGCGGGACTGGGTG 26 84 0 CGACGGGGCG 0.623667 -191 AGGCTGGCTGGCAGTTGCCGCGAACGGAAC 26 199 1 GCAGTTGCCG 0.475732 -76 GGGCGCAGATCCCCCGCGACACGG 27 5 1 GCAGATCCCC 0.177686 -254 CGCCAGTGTTGCGGCGAGCGGAAGCTTTGG 27 93 1 GCGGCGAGCG 0.97009 -166 CCGAAGTTGATCGCCGGCCGCACCAAAGCT 27 115 0 TCGCCGGCCG 0.702159 -144 TGGGAAACCGCTGCGAGCCGAAGTTGATCG 27 132 0 CTGCGAGCCG 0.365185 -127 GGCGCTCACAGCACATCCCGCCTGGGAAAC 27 154 0 GCACATCCCG 0.41555 -105 ACCATTGCCCCCGCGGTGCGTCTAGGGACC 28 11 0 CCGCGGTGCG 0.884969 -72 ACCGCAGAGCCTCCTAGCATT 28 72 0 CCGCAGAGCC 0.889091 -11 CATGCGGTAGGCACCAGGCGGAGGAACC 29 98 1 GCACCAGGCG 0.907157 -18 AGACTCGCATCCGGCGCCCCTCGCCCGTGC 30 25 1 CCGGCGCCCC 0.829971 -71 GCGCGGCCGCCGACCTGGCGCGAGCAGACA 30 62 0 CGACCTGGCG 0.59348 -34 GCCAGGTCGGCGGCCGCGCGGCAAGATGAG 30 73 1 CGGCCGCGCG 0.922589 -23 ACGGCCGACGCCGGCTGCCGAAACGCCGTG 31 39 0 CCGGCTGCCG 0.840853 -46 CAGCCGGCGTCGGCCGTCCGGCCACCCATT 31 52 1 CGGCCGTCCG 0.532408 -33 GACCGCAAAGCCTAATGGGTGG 31 73 0 CCGCAAAGCC 0.620086 -12 TGGATGTTTGGAGGAGTGCG 32 1 0 GAGGAGTGCG 0.282847 -214 CATCCAGCCCGGACCGGGCCAAAACCCAGT 32 25 1 GGACCGGGCC 0.871068 -190 GATCAGGCTGGCGGCAGGCCTGGTCCTACA 32 77 1 GCGGCAGGCC 0.937035 -138 CCAGACTCCGCCGGCGGGCCGTTGCAGACC 32 121 1 CCGGCGGGCC 0.985791 -94 ATTCGCGCGGGCGGAAAGCGTTGGTCTGCA 32 143 0 GCGGAAAGCG 0.657788 -72 GCCGTCGACCCCGATTCGCGCGGGCGGAAA 32 156 0 CCGATTCGCG 0.347047 -59 TCGGGGTCGACGGCTGGCCGAGTGCTACCG 32 172 1 CGGCTGGCCG 0.509472 -43 CGTCGAACGCGTGCTGTCCGGCGGG 32 200 1 GTGCTGTCCG 0.71657 -15 CCAAAGCCTAGCGCTGCGCCTCA 33 4 0 GCGCTGCGCC 0.970744 -66 CCAATTCTGCCCACAGGCCCTACAGTGCGA 34 45 0 CCACAGGCCC 0.83294 -25 GCCGCTTGCGGGGGAGAGCGGCGCCT 35 7 0 GGGGAGAGCG 0.729461 -147 CACTGTGCGAGCAGCATGCCAGGATGACAC 35 89 0 GCAGCATGCC 0.439207 -65 GTCGCCCGAACCACTGTGCGAGCAGCATGC 35 100 0 CCACTGTGCG 0.83874 -54 AGTGGTTCGGGCGACAGGCCTAGGATGTCG 35 115 1 GCGACAGGCC 0.654023 -39 GGCGCGATGGGTACCACCCGAGCCCCCGCC 36 27 0 GTACCACCCG 0.384811 -176 ATGACCCGCACCGCAGCGCGGCGCGATGGG 36 46 0 CCGCAGCGCG 0.978831 -157 CCTCCTCACGCCGCTGCGCGGCGTGCATCG 36 103 1 CCGCTGCGCG 0.984822 -100 CCTCCTCACGCCGCTGCGCGGCGTGCATCG 36 161 1 CCGCTGCGCG 0.984822 -42 ********** Masking position 9 Map Score: 141.96 Number of sites scoring better than the average of aligned sites = 82347 Number in coding regions = 76598 Number in noncoding regions = 5749 Number of orfs with sites within 600 bp upstream = 1578 Fraction of orfs with sites within 600 bp upstream = 0.253453 Motif number 3 TGGGTCAGGCCGACGAGCACTCGACCATTAGG 5 33 1 CGAGAGCCTC 0.500685 -31 GCGCAGCGCGATGAGAAGGAGTT 6 2 1 CGCGCGCATG 0.961011 -299 ATGCAGAGCGCGCAGCGCGATGAGAAGGAGTT 6 60 1 CGCGCGCATG 0.961011 -241 ATGCAGAGCGCGCAGCGCGATGAGAAATAGCA 6 118 1 CGCGCGCATG 0.961011 -183 GATGGTTTAGCGTTCCGCTGTGCCTCTTCAGG 6 259 1 CGTCCGCGTG 0.686568 -42 GGTATGAACGCGCTGCGCAGCGGACCGAGGAG 7 77 1 CGCGCGCGCG 0.499996 -80 TCCGCAAGGCCGCTACACCGTCCTGACCGATG 9 83 1 CGCACACGTC 0.699075 -119 TGGGACTGTCCGCGACGCGACGTGGCCCCTGG 9 117 0 CGCACGCACG 0.953338 -85 AACAAACCACCGCGACACGGCGTCTGTCACAC 10 110 1 CGCACACGCG 0.931261 -191 ACACCCACCTCGCGGCACACACAACACCGACA 10 146 1 CGCGCACCAC 0.562632 -155 CAAAAGCTCTCGACACGCCGTGCGAAAAGGGA 10 192 0 CGAACGCGTG 0.914749 -109 ACGCTACGCGCGCCTAGCGCCGGTGAGCCGTG 10 246 0 CGCTAGCCCG 0.950765 -55 GGACTCTGCCAGCGACGCTACGCGCGCCTAGC 10 260 0 AGCACGCACG 0.507086 -41 GACTGGACGCCGATTCGCTATCGTGCGGCC 11 9 0 CGATCGCATC 0.776958 -56 GCAAGTACCAAGCGGCGCAACGGCGGTTCAAC 12 29 1 AGCGCGCACG 0.763907 -272 CGCTGACCGTCGCCCAGCACCCGCTGCAGATC 12 124 0 CGCCAGCCCC 0.865762 -177 AGCGCAGGCCCGCATCGCCGAGCCTGTAGATA 12 182 1 CGCTCGCGAG 0.944449 -119 CTCTGATCGACGCCACTCCACGGCATTAGGGT 12 273 1 CGCACTCACG 0.688048 -28 CCTGGCGCGCGTCACCCGCGTCGGGTTTT 13 236 0 CGCTCACCGC 0.702648 -19 TGTTGACTACCCCGTCGCACTCGGGGCGG 15 8 0 CCCTCGCCTC 0.838223 -80 GAACATGAGCCCCGCCGCACCGGGCCGTTTCC 17 66 1 CCCCCGCCCG 0.962103 -235 CCCACCGATCCCAGCCGCCGCGTCCCTACCGC 17 141 0 CCACCGCGCG 0.858234 -160 TCCCGGGGCTCCCCTCGCTTTGAGAAGCCGGG 17 180 0 CCCTCGCTTG 0.342862 -121 CCTCCAATCCCGCACAGCCGCGACCAACTCGG 18 19 1 CGCCAGCGCG 0.889898 -282 GCGATGTGCCCGACCCTCGGTGCGCACCAATT 18 141 1 CGACCTCGTG 0.600617 -160 ACCGGTTGCCCGCCTCACAACGACATGCTGAG 18 211 1 CGCTCACACG 0.931437 -90 GCTGCCCGTCCCCGGCGCGACCTATGGAGAAC 20 44 0 CCCGCGCACC 0.840417 -257 GACGCGCACACGACCCGCTGCCCGTCCCCGGC 20 60 0 CGACCGCGCC 0.949547 -241 ACGTGTGTGGCGCCCCACGGTGTTTTCGTGGG 20 164 0 CGCCCACGTG 0.941761 -137 CAGAAGTCCCCGAAGCGCGGGCCATTTGTCCG 22 106 0 CGAGCGCGGC 0.828926 -91 TCCTCCTCATCGCTTCGCTCTGCATCGTCACC 25 26 1 CGCTCGCCTG 0.99222 -275 GCGGCGCAGATGAGTCGCGCCGGTGACGATGC 25 47 0 TGATCGCCCG 0.793165 -254 TCCTGCTCATCGCTTCGCTCTGCATCGTCACC 25 79 1 CGCTCGCCTG 0.99222 -222 GCGGCGCAGATGAGTCGCGCCGGTGACGATGC 25 100 0 TGATCGCCCG 0.793165 -201 TCCTGCTCATCGCTTCGCTCTGCATCGTCACC 25 132 1 CGCTCGCCTG 0.99222 -169 GCGGCGCAGATGAGTCGCGCCGGTGACGATGC 25 153 0 TGATCGCCCG 0.793165 -148 TCCTGCTCATCGCTTCGCTCTGCATCGTCACC 25 185 1 CGCTCGCCTG 0.99222 -116 GCGGCGCAGATGAGTCGCGCCGGTGACGATGC 25 206 0 TGATCGCCCG 0.793165 -95 TCCTCCTCATCGCTTCGCTCTGCATCGTCACC 25 238 1 CGCTCGCCTG 0.99222 -63 GCGTCGCTGACCATGCGCGCCGGTGACGATGC 25 259 0 CCAGCGCCCG 0.855535 -42 CGCGCCGCACTGCCCGCGGGTA 26 1 1 CGCCCGCCTG 0.991677 -274 CGGCGAGGGTCGCGACACCCAGTCCCGCCCCG 26 69 1 CGCACACCAG 0.511686 -206 CGATCGCGAACGCATCGCAACCGTGTCGCGGG 27 23 0 CGCTCGCACC 0.97088 -236 CGATCAACTTCGGCTCGCAGCGGTTTCCCAGG 27 132 1 CGGTCGCGCG 0.582195 -127 GTGCTGTGAGCGCCGCACCACCAGCGCCGACG 27 170 1 CGCGCACACC 0.866787 -89 CATCTTCTGACGCGTAACCGCGTTGTGATCGC 27 221 1 CGCTAACGCG 0.728816 -38 GGTCCCTAGACGCACCGCGGGGGCAATGGTAT 28 11 1 CGCCCGCGGG 0.872458 -72 TCGCATCCGGCGCCCCTCGCCCGTGCGATTCT 30 29 1 CGCCCTCCCC 0.838321 -67 ACCCTCATCTTGCCGCGCGGCCGCCGACCTGG 30 74 0 TGCGCGCGCC 0.882563 -22 CGCCGGCTGCCGAAACGCCGTGGATACATCGT 31 29 0 CGAACGCGTG 0.914749 -56 CCGTCGACCCCGATTCGCGCGGGCGGAAAGCG 32 153 0 CGATCGCCGG 0.916078 -62 TGAGGCGCAGCGCTAGGCTTTGGGATA 33 6 1 CGCGCGCAGG 0.66624 -64 GCTAATGCTGCGCTTCGCACTGTAGGGCCTGT 34 31 1 CGCTCGCCTG 0.99222 -39 AGGCGCCGCTCTCCCCCGCAAGCGG 35 4 1 CGCGCTCCCC 0.883131 -150 GCCTGTCGCCCGAACCACTGTGCGAGCAGCAT 35 102 0 CGACCACGTG 0.78249 -52 GTACCCATCGCGCCGCGCTGCGGTGCGGGTCA 36 43 1 CGCGCGCGCG 0.499996 -160 CTCCTCACGCCGCTGCGCGGCGTGCATCGTCG 36 104 1 CGCGCGCGCG 0.499996 -99 CGTGCATCGTCGCCGAGCTGTGTTGGACTGCT 36 124 1 CGCGAGCGTG 0.864768 -79 CTCCTCACGCCGCTGCGCGGCGTGCATCGTCG 36 162 1 CGCGCGCGCG 0.499996 -41 *** **** *** Masking position 8 Map Score: 118.818 Number of sites scoring better than the average of aligned sites = 18783 Number in coding regions = 17167 Number in noncoding regions = 1616 Number of orfs with sites within 600 bp upstream = 746 Fraction of orfs with sites within 600 bp upstream = 0.11982 Motif number 4 TCGGTTCCGGGTGCCGACCGGTAATCGTTG 4 9 0 GTGCGACCGT 0.245196 -29 GGGCGGTTAGGTCGAGCCCGACGACGATGCAG 6 34 1 GTCGGCCCGC 0.599888 -267 GGGCGGTTAGGTCGAGCCCGACGACGATGCAG 6 92 1 GTCGGCCCGC 0.599888 -209 GGCTGGTGGCGCTCACCCCGTTCCGGACTCAG 6 181 1 GCTCCCCCGT 0.619897 -120 CGCCGAGGTGGTCGGCACCGTAACGGCCGGTT 7 46 0 GTCGCACCGA 0.878248 -111 AGTCGGAGAAGTTGGGAGCGGTAG 9 3 0 GTTGGAGCGT 0.426834 -199 ATATTGCCTCATCGAGACCGTATCCGCAAGGC 9 61 1 ATCGGACCGA 0.612282 -141 CCGCTACACCGTCCTGACCGATGCACCAGGGG 9 92 1 GTCCGACCGT 0.598965 -110 CTAACATGGGACTGTCCGCGACGCGACGTGGC 9 123 0 ACTGCCGCGC 0.902312 -79 CTTGCCTCCTGCCGCGACCATCCGATAGCTTG 9 175 1 GCCGGACCAC 0.837478 -27 GCGCCGGTGAGCCGTGCCGGCCTATCGCCCAC 10 230 0 GCCGGCCGGC 0.615773 -71 TTCGTCGGACTCTGCCAGCGACGCTACGCGCG 10 266 0 TCTGCAGCGC 0.47291 -35 GTGCTGGGCGACGGTCAGCGGCCTCGGCGGGG 12 136 1 ACGGCAGCGC 0.835433 -165 TCTCGCGGCCTCGGCCCCCGCCGAGGCCGCTG 12 151 0 TCGGCCCCGC 0.625535 -150 GAGAGCGCAGGCCCGCATCGCCGAGCCTGTAG 12 179 1 GCCCCATCGC 0.509809 -122 GCCTTTAGTTATCGTGCTCGGCGGCACTCGCC 12 225 0 ATCGGCTCGC 0.38462 -76 TCGTGGTGTAATCGGCAGCACCTCTGATTTTG 13 62 0 ATCGCAGCAC 0.528933 -193 TGCTGACGGCGTTGACACCGTCTAAAGTCACA 13 109 0 GTTGCACCGC 0.955509 -146 CGGTGTCAACGCCGTCAGCACAGTCAACGCTG 13 121 1 GCCGCAGCAA 0.330731 -134 CACAGTCAACGCTGTCGCCGTCTACCCACCGG 13 139 1 GCTGCGCCGC 0.893202 -116 CCGGCCCTTTATCCGGTCCGGCCACATCAACA 13 192 0 ATCCGTCCGC 0.225126 -63 CCTGGCGCGCGTCACCCGCGTCGGGTTTTCCG 13 233 0 GTCACCGCGC 0.578443 -22 GTTAGTCAACATTGGGCCCGGCTTCCCCGCCC 14 12 0 ATTGGCCCGC 0.597728 -47 TCTTGGGTTGGCTGGCCCCGACCGCTGTTAGC 16 39 0 GCTGCCCCGC 0.678316 -58 CATCGGCTCAATTGTCAGCATCCTATGGGGAA 17 37 1 ATTGCAGCAC 0.24889 -264 GAAGCCGGGCGCTCACCCCACCGATCCCAGCC 17 157 0 GCTCCCCCAC 0.508604 -144 ACAACCACTGGCCGTCAGCCTAGATCAGTGAC 17 237 0 GCCGCAGCCA 0.442288 -64 ATCCCGCACAGCCGCGACCAACTCGGGAACAA 18 25 1 GCCGGACCAC 0.698437 -276 GATGTGCCCGGCTCTCAGCGACAGCTGCCTGA 18 66 0 GCTCCAGCGC 0.839828 -235 GTGGCCGTGCGATGTGCCCGACCCTCGGTGCG 18 133 1 GATGGCCCGC 0.382269 -168 AGGTGCACCGGTTGCCCGCCTCACAACGACAT 18 205 1 GTTGCCGCCC 0.6588 -96 GCTGCGAGCGACCGTGTGCGCCTCAGCATGTC 18 232 0 ACCGGTGCGC 0.474737 -69 AGGAGTGTTCGTTGTGCCCGGCTGCGAGCGAC 18 252 0 GTTGGCCCGC 0.9173 -49 GGTTGGCTGGGCTGCCCGCGGTGGTGTTGACC 19 30 1 GCTGCCGCGT 0.634347 -78 CGGCGGTAGGGCCGGCACCGCCGGGTCGGCAC 19 65 0 GCCGCACCGC 0.98888 -43 CGACCCGCTGCCCGTCCCCGGCGCGACCTATG 20 50 0 CCCGCCCCGC 0.81591 -251 CGTGCGAAACGCCGACACCGTTGAACTCCACC 20 103 1 GCCGCACCGT 0.935853 -198 TCAAACGTGTGTGGCGCCCCACGGTGTTTTCG 20 168 0 GTGGGCCCCC 0.452788 -133 GCCACAACCCACCGACACCGTCACTACCCTCA 20 204 1 ACCGCACCGC 0.977507 -97 CGCTACCGTCGCCGGCCGCCGCAGTCACACTC 21 39 0 GCCGCCGCCC 0.52817 -35 ACTCCATCATGCCGCTACCGTCGCCGGCCGCC 21 51 0 GCCGTACCGC 0.66588 -23 GGGCCATTTGTCCGCGCCCGTCGGTGATCCAC 22 88 0 TCCGGCCCGC 0.744761 -109 GCGCGGACAAATGGCCCGCGCTTCGGGGACTT 22 103 1 ATGGCCGCGT 0.341977 -94 TACCGTCGTCGTCGTGACCGCGGCTCCGGCG 23 43 1 GTCGGACCGG 0.64873 -21 TTCGCTCTGCATCGTCACCGGCGCGACTCATC 25 39 1 ATCGCACCGC 0.963746 -262 TTCGCTCTGCATCGTCACCGGCGCGACTCATC 25 92 1 ATCGCACCGC 0.963746 -209 TTCGCTCTGCATCGTCACCGGCGCGACTCATC 25 145 1 ATCGCACCGC 0.963746 -156 TTCGCTCTGCATCGTCACCGGCGCGACTCATC 25 198 1 ATCGCACCGC 0.963746 -103 TTCGCTCTGCATCGTCACCGGCGCGCATGGTC 25 251 1 ATCGCACCGC 0.963746 -50 ACCGGCGCGCATGGTCAGCGACGCTACACCGT 25 267 1 ATGGCAGCGC 0.757424 -34 GGGACTGGGTGTCGCGACCCTCGCCGGTGACT 26 63 0 GTCGGACCCC 0.837999 -212 TGAGGTCGAGGTCGTCGCCGACGGGGCGGGAC 26 90 0 GTCGCGCCGC 0.885504 -185 GGGCGCAGATCCCCCGCGACACGGTTGCGA 27 9 1 ATCCCCGCGC 0.834689 -250 AATGTGAAGAGTCCGGACCGATCGCGAACGCA 27 41 0 GTCCGACCGT 0.592521 -218 CGCCAGTGTTGCGGCGAGCGGAAGCTTTGGTG 27 93 1 GCGGGAGCGA 0.444742 -166 GAAGTTGATCGCCGGCCGCACCAAAGCTTCCG 27 111 0 GCCGCCGCAC 0.848052 -148 ATCAACTTCGGCTCGCAGCGGTTTCCCAGGCG 27 134 1 GCTCCAGCGT 0.39283 -125 GGCGGGATGTGCTGTGAGCGCCGCACCACCAG 27 162 1 GCTGGAGCGC 0.917256 -97 TGAGCGCCGCACCACCAGCGCCGACGCTAAGG 27 176 1 ACCACAGCGC 0.378507 -83 TGAGAATACCATTGCCCCCGCGGTGCGTCTAG 28 16 0 ATTGCCCCGG 0.313163 -67 TGAGTCGTGTACGGAGACCGTC 29 1 0 ACGGGACCGC 0.848957 -115 ACAGACTCGCATCCGGCGCCCCTCGCCCGTGC 30 23 1 ATCCGCGCCC 0.287609 -73 ATCTTGCCGCGCGGCCGCCGACCTGGCGCGAG 30 68 0 GCGGCGCCGC 0.575077 -28 TGGCCGGACGGCCGACGCCGGCTGCCGAAACG 31 44 0 GCCGCGCCGC 0.660197 -41 TCCTCCAAACATCCAGCCCGGACCGGGCCAAA 32 16 1 ATCCGCCCGA 0.373746 -199 TCGGCCAGCCGTCGACCCCGATTCGCGCGGGC 32 161 0 GTCGCCCCGT 0.835569 -54 AGGCGCCGCTCTCCCCCGCAAGCGGCAGG 35 8 1 GCTCCCCCCC 0.624188 -146 TCCCTTCGTCGTCGCCCGCGCAGTCACAGTGT 35 61 1 GTCGCCGCGA 0.837594 -93 ACCGACAGATTGTGCCCGACGACATCCTAG 35 134 0 ATTGGCCCGC 0.86129 -20 TACCACCCGAGCCCCCGCCGTCTAAGCTTTCC 36 14 0 GCCCCGCCGC 0.883252 -189 CTTGACGATGACCCGCACCGCAGCGCGGCGCG 36 51 0 ACCCCACCGA 0.548435 -152 **** ***** * Masking position 9 Map Score: 103.826 Number of sites scoring better than the average of aligned sites = 62975 Number in coding regions = 60048 Number in noncoding regions = 2927 Number of orfs with sites within 600 bp upstream = 1163 Fraction of orfs with sites within 600 bp upstream = 0.186797 Motif number 5 CATGATTTTGACGAGGAGCCGAATACG 2 51 1 AGAGGAGCCG 0.989564 -17 ACCGGTCGGCACCCGGAACCGAGCCGTTT 4 19 1 ACCGGAACCG 0.597222 -19 GCGCCTAGCGCCGGTGAGCCGTGCCGGCCTA 10 238 0 CGGTGAGCCG 0.84658 -63 CAGGATGAACCGCTAACCCAGG 16 2 1 AGATGAACCG 0.761094 -95 TCACAACGACATGCTGAGGCGCACACGGTCG 18 225 1 AGCTGAGGCG 0.702284 -76 TGTGCCGACCCGGCGGTGCCGGCCCTACCGC 19 64 1 CGCGGTGCCG 0.783133 -44 CGTCGCGACTATGCTGAGTCGTC 19 95 1 AGCTGAGTCG 0.898807 -13 CGCCGGAGCCGCGGTCACGAC 23 53 0 CCCGGAGCCG 0.956545 -11 CGAAGCGATGAGGAGGAGCGGCGCAGATGAG 25 12 0 AGAGGAGCGG 0.964357 -289 AGGAGCGGCGCAGATGAGTCGCGCCGGTGAC 25 52 0 CGATGAGTCG 0.937617 -249 CGAAGCGATGAGCAGGAGCGGCGCAGATGAG 25 65 0 ACAGGAGCGG 0.906916 -236 AGGAGCGGCGCAGATGAGTCGCGCCGGTGAC 25 105 0 CGATGAGTCG 0.937617 -196 CGAAGCGATGAGCAGGAGCGGCGCAGATGAG 25 118 0 ACAGGAGCGG 0.906916 -183 AGGAGCGGCGCAGATGAGTCGCGCCGGTGAC 25 158 0 CGATGAGTCG 0.937617 -143 CGAAGCGATGAGCAGGAGCGGCGCAGATGAG 25 171 0 ACAGGAGCGG 0.906916 -130 AGGAGCGGCGCAGATGAGTCGCGCCGGTGAC 25 211 0 CGATGAGTCG 0.937617 -90 CGAAGCGATGAGGAGGAGCGGCGCAGATGAG 25 224 0 AGAGGAGCGG 0.964357 -77 TGATCGCGAGCTGAGGAGACGGT 27 246 1 CGAGGAGACG 0.848993 -13 CGAAGTGTCCAGCATGAGTCGTGTACGGAGA 29 16 0 ACATGAGTCG 0.8378 -100 AACGGCCCGCCGGCGGAGTCTGGCATTTACG 32 113 0 CGCGGAGTCT 0.412758 -102 GCACAGCTTGACGATGACCCGCACCGCAGCG 36 58 0 AGATGACCCG 0.728086 -145 CAGCGGCGTGAGGAGGAGCCGAGCAGTCAAG 36 88 0 AGAGGAGCCG 0.989564 -115 CAGCGGCGTGAGGAGGAGCCGAGCAGTCCAA 36 146 0 AGAGGAGCCG 0.989564 -57 * ********* Masking position 6 Map Score: 39.5035 Number of sites scoring better than the average of aligned sites = 3652 Number in coding regions = 3390 Number in noncoding regions = 262 Number of orfs with sites within 600 bp upstream = 220 Fraction of orfs with sites within 600 bp upstream = 0.0353357 Motif number 6 TCGAGTGCTCGTCGGCCTGACCCAGTAGGTC 5 26 0 GCGGCCTGAC 0.451463 -38 CTGCATCGTCGTCGGGCTCGACCTAACCGCC 6 35 0 GCGGGCTCGA 0.507492 -266 CTGCATCGTCGTCGGGCTCGACCTAACCGCC 6 93 0 GCGGGCTCGA 0.507492 -208 GTGCGTGAGAGACTTGCCGGT 7 146 1 GCTTGCCGGT 0.377477 -11 CCGGAACGCCGACTGGCTGAGTGTAGGTCAA 8 25 0 GCTGGCTGAG 0.34375 -74 TCAGCCAGTCGGCGTTCCGGCCGAGGCTAGG 8 36 1 GCGTTCCGGC 0.370433 -63 ATGTTTAGCAGACTGGCTTGCCTCCTGCCGC 9 159 1 GCTGGCTTGC 0.902202 -43 CACTAGGTGAGAAGGACCGGCCGGCGT 10 7 0 GAGGACCGGC 0.826616 -294 GCGTTGAGCAGTATTGCCGGCACTAGGTGAG 10 27 0 GATTGCCGGC 0.81437 -274 ATCACCTGGTGTCTGGCTCACTTTGCGTCTG 10 75 0 GCTGGCTCAC 0.654202 -226 GAGCTTTTGCGTCTGGTGGGCGATAGGCCGG 10 215 1 GCTGGTGGGC 0.731965 -86 GCGCCGGTGAGCCGTGCCGGCCTATCGCCCA 10 231 0 GCGTGCCGGC 0.599604 -70 GGCTATTCCCGACTGGACGCCGATTCGCTAT 11 20 0 GCTGGACGCC 0.40317 -45 CCCACACCTGGGCGTACTGGCGTGCGCCATT 12 77 1 GCGTACTGGC 0.477069 -224 AGATCAGGCAGCATGGCCTGCAATGGCGCAC 12 98 0 GATGGCCTGC 0.844164 -203 AGGCCATGCTGCCTGATCTGCAGCGGGTGCT 12 110 1 GCTGATCTGC 0.586189 -191 GGCTCGGCGATGCGGGCCTGCGCTCTCGCGG 12 175 0 TCGGGCCTGC 0.341842 -126 TGTTGATGTGGCCGGACCGGATAAAGGGCCG 13 192 1 GCGGACCGGA 0.627263 -63 CATTGGGCCCGGCTTCCCCGCCCG 14 4 0 GCTTCCCCGC 0.630313 -55 GACGGTCTTGGGTTGGCTGGCCCCGACCGCT 16 45 0 GTTGGCTGGC 0.81211 -52 AGCGACAGCTGCCTGACCGGCGGTTTTGTTC 18 51 0 GCTGACCGGC 0.933007 -250 GAGGTGCACCGGTTGCCCGCCTCACAACGAC 18 204 1 GTTGCCCGCC 0.309379 -97 CCTACCCGCGGTCTGGTTGGCTGGGCTGCCC 19 16 1 GCTGGTTGGC 0.945383 -92 GGCCGGCACCGCCGGGTCGGCACACCGGTCA 19 57 0 GCGGGTCGGC 0.801485 -51 CGCGACGGCGGTAGGGCCGGCACCGCCGGGT 19 71 0 GAGGGCCGGC 0.650263 -37 CACTCAATTTGCATGGCCGACAACAGTTTGG 21 13 0 GATGGCCGAC 0.786887 -61 GGCCACGATGGGCTGGTCGGATCAAAGGCAT 22 149 1 GCTGGTCGGA 0.831425 -48 CCCGAACTCGGTCGGGTTCGCTTGCGCTGTT 24 17 0 GCGGGTTCGC 0.783429 -35 TCACCGGCGCGCATGGTCAGCGACGCTACAC 25 265 1 GATGGTCAGC 0.379002 -36 TCGGCGAGCGGCATGGCCTACCGGTGATACC 26 29 0 GATGGCCTAC 0.421541 -246 TGCTCGCTTAGGCTGGCTGGCAGTTGCCGCG 26 190 1 GCTGGCTGGC 0.981321 -85 GCCCATGCACGATTGGCCAGCTTACTGGATT 26 240 0 GTTGGCCAGC 0.45766 -35 TGAAATGCTAGGAGGCTCTGCGGT 28 69 1 GAGGCTCTGC 0.287217 -14 CCTACCGCATGTCTGACTCGCGTTAACATCG 29 78 0 GCTGACTCGC 0.693955 -38 GCGAGTCTGTGTCTGCTCGCCG 30 2 0 GCTGCTCGCC 0.643861 -94 GTCTGCTCGCGCCAGGTCGGCGGCCGCGCGG 30 63 1 GCAGGTCGGC 0.703809 -33 CGGGGTCGACGGCTGGCCGAGTGCTACCGTC 32 173 1 GCTGGCCGAG 0.645049 -42 AGCTGTGCTTGACTGCTCGGCTCCTCCTCAC 36 81 1 GCTGCTCGGC 0.944875 -122 AGCTGTGTTGGACTGCTCGGCTCCTCCTCAC 36 139 1 GCTGCTCGGC 0.944875 -64 * ********* Masking position 1 Map Score: 39.142 Number of sites scoring better than the average of aligned sites = 22663 Number in coding regions = 21088 Number in noncoding regions = 1575 Number of orfs with sites within 600 bp upstream = 831 Fraction of orfs with sites within 600 bp upstream = 0.133473 Motif number 7 GAGCCCGACGACGATGCAGAGCGCGCAGCG 6 47 1 ACGATGCAGA 0.994282 -254 GAGCCCGACGACGATGCAGAGCGCGCAGCG 6 105 1 ACGATGCAGA 0.994282 -196 GGCAACGAAGCCGACAAACACCTG 6 287 0 ACGAAGCCGA 0.894505 -14 ACCGGCCGTTACGGTGCCGACCACCTCGGC 7 47 1 ACGGTGCCGA 0.939722 -110 CGCCCAGCACCCGCTGCAGATCAGGCAGCA 12 116 0 CCGCTGCAGA 0.939729 -185 CGCGCCGGTGACGATGCAGAGCGAAGCGAT 25 34 0 ACGATGCAGA 0.994282 -267 CGCGCCGGTGACGATGCAGAGCGAAGCGAT 25 87 0 ACGATGCAGA 0.994282 -214 CGCGCCGGTGACGATGCAGAGCGAAGCGAT 25 140 0 ACGATGCAGA 0.994282 -161 CGCGCCGGTGACGATGCAGAGCGAAGCGAT 25 193 0 ACGATGCAGA 0.994282 -108 CGCGCCGGTGACGATGCAGAGCGAAGCGAT 25 246 0 ACGATGCAGA 0.994282 -55 CGCCGGCGGGCCGTTGCAGACCAACGCTTT 32 129 1 CCGTTGCAGA 0.913193 -86 ********** Masking position 10 Map Score: 30.6525 Number of sites scoring better than the average of aligned sites = 50 Number in coding regions = 12 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 8 GTCGAGCCCGACGACGATGCAGAGCGCGCA 6 44 1 ACGACGATGC 0.967554 -257 GTCGAGCCCGACGACGATGCAGAGCGCGCA 6 102 1 ACGACGATGC 0.967554 -199 ACAAACCCATGGGACGATGATCGTGACGGA 15 37 1 GGGACGATGA 0.921552 -51 TACCGCCGTCGCGACTATGCTGAGTCGTC 19 89 1 GCGACTATGC 0.934844 -19 AGTCGCGCCGGTGACGATGCAGAGCGAAGC 25 37 0 GTGACGATGC 0.99417 -264 AGTCGCGCCGGTGACGATGCAGAGCGAAGC 25 90 0 GTGACGATGC 0.99417 -211 AGTCGCGCCGGTGACGATGCAGAGCGAAGC 25 143 0 GTGACGATGC 0.99417 -158 AGTCGCGCCGGTGACGATGCAGAGCGAAGC 25 196 0 GTGACGATGC 0.99417 -105 ATGCGCGCCGGTGACGATGCAGAGCGAAGC 25 249 0 GTGACGATGC 0.99417 -52 TGCTACGTTAGTGACGATTAACCGAAGTGT 29 39 0 GTGACGATTA 0.729164 -77 GACTGCGCGGGCGACGACGAAGGGAGAGCA 35 56 0 GCGACGACGA 0.898091 -98 CAAGCACAGCTTGACGATGACCCGCACCGC 36 62 0 TTGACGATGA 0.760391 -141 ACACAGCTCGGCGACGATGCACGCCGCGCA 36 117 0 GCGACGATGC 0.99556 -86 ACCTAGCTCGGCGACGATGCACGCCGCGCA 36 175 0 GCGACGATGC 0.99556 -28 ********** Masking position 4 Map Score: 37.7481 Number of sites scoring better than the average of aligned sites = 393 Number in coding regions = 281 Number in noncoding regions = 112 Number of orfs with sites within 600 bp upstream = 81 Fraction of orfs with sites within 600 bp upstream = 0.01301 Motif number 9 TGTGGCCCCGGCGGTAGTGTGAGCTGTATTA 2 20 1 GCGGTAGTGG 0.898704 -48 CCGCAGTAAGGTCGTAGACCGTG 3 3 1 GCAGTAAGGC 0.716841 -57 TGCCATGACCGCGGAAGGGGGATCACGGTCT 3 26 0 GCGGAAGGGG 0.813953 -34 CTCGACCATTAGGGTAGGGGCC 5 52 1 AGGGTAGGGC 0.931659 -12 AAGGAGTTGGGCGGTTAGGTCGAGCCCGACG 6 26 1 GCGGTTAGGC 0.767953 -275 AAGGAGTTGGGCGGTTAGGTCGAGCCCGACG 6 84 1 GCGGTTAGGC 0.767953 -217 GATGAGGAGTGCGGGAGTGCGTGAGAGACTT 7 130 1 GCGGGAGTGG 0.598011 -27 TAGGTCAACGGCGCTAGGGCGT 8 2 0 GCGCTAGGGG 0.972973 -97 GTTCCGGCCGAGGCTAGGGACCACTCGTAGC 8 49 1 AGGCTAGGGC 0.873357 -50 CCTGACCGATGCACCAGGGGCCACGTCGCGT 9 104 1 GCACCAGGGC 0.710362 -98 CGGCTCACCGGCGCTAGGCGCGCGTAGCGTC 10 248 1 GCGCTAGGCC 0.908019 -53 CCACTCCACGGCATTAGGGTCGAACC 12 285 1 GCATTAGGGC 0.716765 -16 CTACCCCGTCGCACTCGGGGCGG 15 3 0 GCACTCGGGC 0.789536 -85 TACGCTAACAGCGGTCGGGGCCAGCCAACCC 16 36 1 GCGGTCGGGC 0.983466 -61 CGCAATGTCCGCGGTAGGGACGCGGCGGCTG 17 131 1 GCGGTAGGGC 0.99571 -170 AGTCGCGACGGCGGTAGGGCCGGCACCGCCG 19 74 0 GCGGTAGGGC 0.995705 -34 TAACGATTTGAGGGTAGTGACGGTGTCGGTG 20 213 0 AGGGTAGTGC 0.629556 -88 GCGGCCGGCGACGGTAGCGGCATGATGGAGT 21 52 1 ACGGTAGCGC 0.714048 -22 TTTCTGAACGGCGGTTGGCAGACAACAGGGT 22 44 1 GCGGTTGGCG 0.614717 -153 ATCGTGGCCAGGGCTAGGGACAGAAGTCCCC 22 127 0 GGGCTAGGGC 0.972971 -70 AGCTCGTGCTACGTTAGTGACGATTAACCGA 29 44 0 ACGTTAGTGC 0.326484 -72 AGTCAGACATGCGGTAGGCACCAGGCGGAGG 29 91 1 GCGGTAGGCC 0.969614 -25 AGAATCGCACGGGCGAGGGGCGCCGGATGCG 30 30 0 GGGCGAGGGC 0.857859 -66 TGCGCTTCGCACTGTAGGGCCTGTGGGCAGA 34 39 1 ACTGTAGGGC 0.627534 -31 TCCCCCGCAAGCGGCAGGGACCCCCACCTCA 35 22 1 GCGGCAGGGC 0.97495 -132 TAGACGGCGGGGGCTCGGGTGGTACCCATCG 36 22 1 GGGCTCGGGG 0.738807 -181 ********* * Masking position 7 Map Score: 36.1045 Number of sites scoring better than the average of aligned sites = 2866 Number in coding regions = 2607 Number in noncoding regions = 259 Number of orfs with sites within 600 bp upstream = 249 Fraction of orfs with sites within 600 bp upstream = 0.0399936 Motif number 10 CGCGCTGGTCAGCTGCCATGACCG 3 46 0 CTGGTCAGCT 0.712529 -14 CAACGATTACCGGTCGGCACCCGGAACCG 4 10 1 CCGGTCGGCA 0.500776 -28 AAACGGCTCGGTTCCGGGTGCCG 4 25 0 CGGCTCGGTT 0.704542 -13 TGGTCGAGTGCTCGTCGGCCTGACCCAGTA 5 30 0 CTCGTCGGCC 0.706063 -34 CGGTGCCGACCACCTCGGCGGTATGAACGC 7 58 1 CACCTCGGCG 0.75118 -99 TATGAACGCGCTGCGCAGCGGACCGAGGAG 7 79 1 CTGCGCAGCG 0.830596 -78 TGCCCGAATTCTCCTCGGTCCGCTGCGCAG 7 89 0 CTCCTCGGTC 0.294234 -68 GCTTTTGCGTCTGGTGGGCGATAGGCCGGC 10 217 1 CTGGTGGGCG 0.645585 -84 GGCGATAGGCCGGCACGGCTCACCGGCGCT 10 233 1 CGGCACGGCT 0.75481 -68 CTATTCCCGACTGGACGCCGATTCGCTATC 11 19 0 CTGGACGCCG 0.511572 -46 CGGTATCTACAGGCTCGGCGATGCGGGCCT 12 187 0 AGGCTCGGCG 0.694927 -114 TTTAGTTATCGTGCTCGGCGGCACTCGCCG 12 224 0 GTGCTCGGCG 0.829276 -77 CGATAACTAAAGGCTCGGCGAAGACAGCGG 12 243 1 AGGCTCGGCG 0.694927 -58 TGTTGTCATCCTTGTTGGCTAAACAACCAC 17 261 0 CTTGTTGGCT 0.0354142 -40 TTGTCTCTCCTCGGCTTATTTGTTGT 17 285 0 CTCCTCGGCT 0.938557 -16 ACGAACACTCCTGCTCTGCCGCGCCGATGT 18 272 1 CTGCTCTGCC 0.523156 -29 TACCCGCGGTCTGGTTGGCTGGGCTGCCCG 19 18 1 CTGGTTGGCT 0.587837 -90 CCGGCACCGCCGGGTCGGCACACCGGTCAA 19 56 0 CGGGTCGGCA 0.660607 -52 CCACGATGGGCTGGTCGGATCAAAGGCATC 22 151 1 CTGGTCGGAT 0.691373 -46 ACTCATCTGCGCCGCTCCTCCTCATC 25 7 1 CTGCGCCGCT 0.891255 -294 CGCGACTCATCTGCGCCGCTCCTGCTCATC 25 60 1 CTGCGCCGCT 0.891255 -241 CGCGACTCATCTGCGCCGCTCCTGCTCATC 25 113 1 CTGCGCCGCT 0.891255 -188 CGCGACTCATCTGCGCCGCTCCTGCTCATC 25 166 1 CTGCGCCGCT 0.891255 -135 CGCGACTCATCTGCGCCGCTCCTCCTCATC 25 219 1 CTGCGCCGCT 0.891255 -82 GTAGGCCATGCCGCTCGCCGAGGGAGTCAC 26 39 1 CCGCTCGCCG 0.872244 -236 TTATCAATGGCTGCTCGCTTAGGCTGGCTG 26 179 1 CTGCTCGCTT 0.587373 -96 ACCAAAGCTTCCGCTCGCCGCAACACTGGC 27 94 0 CCGCTCGCCG 0.872244 -165 CGATCAACTTCGGCTCGCAGCGGTTTCCCA 27 132 1 CGGCTCGCAG 0.430699 -127 ACCGTCTCCTCAGCTCGCGATCACA 27 244 0 CTCCTCAGCT 0.523926 -15 GAGTCTGTGTCTGCTCGCCG 30 1 0 CTGCTCGCCG 0.968542 -95 CTGCTCGCGCCAGGTCGGCGGCCGCGCGGC 30 65 1 CAGGTCGGCG 0.872457 -31 TCCTGGCATGCTGCTCGCACAGTGGTTCGG 35 95 1 CTGCTCGCAC 0.373633 -59 CTGTGCTTGACTGCTCGGCTCCTCCTCACG 36 83 1 CTGCTCGGCT 0.98922 -120 CCTCACGCCGCTGCGCGGCGTGCATCGTCG 36 106 1 CTGCGCGGCG 0.924901 -97 CAGTCCAACACAGCTCGGCGACGATGCACG 36 124 0 CAGCTCGGCG 0.947716 -79 CTGTGTTGGACTGCTCGGCTCCTCCTCACG 36 141 1 CTGCTCGGCT 0.98922 -62 CCTCACGCCGCTGCGCGGCGTGCATCGTCG 36 164 1 CTGCGCGGCG 0.924901 -39 ********** Masking position 6 Map Score: 50.1537 Number of sites scoring better than the average of aligned sites = 13348 Number in coding regions = 12424 Number in noncoding regions = 924 Number of orfs with sites within 600 bp upstream = 650 Fraction of orfs with sites within 600 bp upstream = 0.104401 Motif number 11 CCTGACGACTCCGATCCACCCAGTATCGCA 1 65 0 CCGATCCACC 0.868538 -31 ACCGTAACGGCCGGTTCACCAAGGCCGATA 7 32 0 CCGGTTCACC 0.970318 -125 CTCACGCACTCCCGCACTCCTCATCGTGGA 7 125 0 CCCGCACTCC 0.551134 -32 CTAGCCTCGGCCGGAACGCCGACTGGCTGA 8 36 0 CCGGAACGCC 0.598813 -63 CCCAACTTCTCCGACTCTCATCATCGATTG 9 19 1 CCGACTCTCA 0.501428 -183 ATCCGCAAGGCCGCTACACCGTCCTGACCG 9 82 1 CCGCTACACC 0.820933 -120 ACCGTCCTGACCGATGCACCAGGGGCCACG 9 99 1 CCGATGCACC 0.826659 -103 ACGCCGGCCGGTCCTTCTCACCTAGTG 10 8 1 CCGGTCCTTC 0.618265 -293 GTGGTTTGTTCCGGATCACCTGGTGTCTGG 10 90 0 CCGGATCACC 0.951011 -211 GTCTGTCACACCGACACACCCACCTCGCGG 10 131 1 CCGACACACC 0.914258 -170 CACCCACCTCGCGGCACACACAACACCGAC 10 147 1 GCGGCACACA 0.575799 -154 ATAGGCCGGCACGGCTCACCGGCGCTAGGC 10 237 1 ACGGCTCACC 0.711997 -64 CGGCGCAACGGCGGTTCAACTTCCCGGATG 12 41 1 GCGGTTCAAC 0.423128 -260 GGATAAGGCGCCGGAAAACCCGACGCGGGT 13 222 1 CCGGAAAACC 0.171335 -33 GCCTGGGTTAGCGGTTCATCCTG 16 4 0 GCGGTTCATC 0.667065 -93 AACATGAGCCCCGCCGCACCGGGCCGTTTC 17 67 1 CCGCCGCACC 0.914116 -234 GGTAAGAGTCCCGGGGCTCCCCTCGCTTTG 17 190 0 CCGGGGCTCC 0.581896 -111 CCCGATGTGCCCGGCTCTCAGCGACAGCTG 18 71 0 CCGGCTCTCA 0.771301 -230 TGCGATGTGCCCGACCCTCGGTGCGCACCA 18 140 1 CCGACCCTCG 0.234914 -161 AGGCGGGCAACCGGTGCACCTCCGCTCAGA 18 196 0 CCGGTGCACC 0.941149 -105 CACCGGTTGCCCGCCTCACAACGACATGCT 18 210 1 CCGCCTCACA 0.640999 -91 CACCGCCGGGTCGGCACACCGGTCAACACC 19 52 0 TCGGCACACC 0.542715 -56 CCCGGCGGTGCCGGCCCTACCGCCGTCGCG 19 72 1 CCGGCCCTAC 0.57463 -36 TGTACAGCTTCCGGTTCTCCATAGGTCGCG 20 31 1 CCGGTTCTCC 0.947473 -270 GCGGTTCTCCTTGCAGACGC 20 291 0 GCGGTTCTCC 0.892981 -10 TGGTCCCCAAGTGGATCACCGACGGGCGCG 22 78 1 GTGGATCACC 0.166132 -119 ACCCTCGCGGATCACCCGAACTCGGT 24 36 0 GCGGATCACC 0.899801 -16 CTCATCTGCGCCGCTCCTCCTCATCGCTTC 25 12 1 CCGCTCCTCC 0.781228 -289 CGTCACCGGCGCGACTCATCTGCGCCGCTC 25 51 1 GCGACTCATC 0.576505 -250 CGTCACCGGCGCGACTCATCTGCGCCGCTC 25 104 1 GCGACTCATC 0.576505 -197 CGTCACCGGCGCGACTCATCTGCGCCGCTC 25 157 1 GCGACTCATC 0.576505 -144 CGTCACCGGCGCGACTCATCTGCGCCGCTC 25 210 1 GCGACTCATC 0.576505 -91 CTCATCTGCGCCGCTCCTCCTCATCGCTTC 25 224 1 CCGCTCCTCC 0.781228 -77 GCTGTGAGCGCCGCACCACCAGCGCCGACG 27 172 1 CCGCACCACC 0.793523 -87 AGACTCGCATCCGGCGCCCCTCGCCCGTGC 30 25 1 CCGGCGCCCC 0.760244 -71 ACGCCGGCTGCCGAAACGCCGTGGATACAT 31 32 0 CCGAAACGCC 0.308009 -53 AGGCGCCGCTCTCCCCCGCAAGCG 35 5 1 GCCGCTCTCC 0.541941 -149 ********** Masking position 7 Map Score: 32.9492 Number of sites scoring better than the average of aligned sites = 9970 Number in coding regions = 9124 Number in noncoding regions = 846 Number of orfs with sites within 600 bp upstream = 590 Fraction of orfs with sites within 600 bp upstream = 0.0947639 Motif number 12 GACCTACTGGGTCAGGCCGACGAGCACTCG 5 26 1 GTCAGGCCGA 0.770179 -38 CACCTGAAGAGGCACAGCGGAACGCTAAAC 6 263 0 GGCACAGCGG 0.891813 -38 AGCCTCGGCCGGAACGCCGACTGGCTGAGT 8 34 0 GGAACGCCGA 0.617246 -65 TGGTGCATCGGTCAGGACGGTGTAGCGGCC 9 90 0 GTCAGGACGG 0.776887 -112 CACGGCGTCTGTCACACCGACACACCCACC 10 125 1 GTCACACCGA 0.961172 -176 AGGCCGGCACGGCTCACCGGCGCTAGGCGC 10 239 1 GGCTCACCGG 0.878423 -62 AGTACCAAGCGGCGCAACGGCGGTTCAACT 12 32 1 GGCGCAACGG 0.964329 -269 ACCGTCTAAAGTCACATCGATGTGCAATCC 13 95 0 GTCACATCGA 0.804678 -160 AAATGGTGACGTCACAACGGTGTCACAAGC 17 98 1 GTCACAACGG 0.962576 -203 CTGAGAGCCGGGCACATCGGGTGTCGCCCG 18 80 1 GGCACATCGG 0.933569 -221 CCGAGGGTCGGGCACATCGCACGGCCACAA 18 131 0 GGCACATCGC 0.540973 -170 GGTTGCCCGCCTCACAACGACATGCTGAGG 18 214 1 CTCACAACGA 0.356777 -87 CTCGCAGCCGGGCACAACGAACACTCCTGC 18 256 1 GGCACAACGA 0.934156 -45 CCGCCGGGTCGGCACACCGGTCAACACCAC 19 50 0 GGCACACCGG 0.988296 -58 ACTCAGCATAGTCGCGACGGCGGTAGGGCC 19 84 0 GTCGCGACGG 0.964329 -24 TTCTCCATAGGTCGCGCCGGGGACGGGCAG 20 45 1 GTCGCGCCGG 0.98478 -256 CGGAGCCGCGGTCACGACGACGACGGTACC 23 41 0 GTCACGACGA 0.934156 -23 GCGCAGATGAGTCGCGCCGGTGACGATGCA 25 46 0 GTCGCGCCGG 0.98478 -255 GCGCAGATGAGTCGCGCCGGTGACGATGCA 25 99 0 GTCGCGCCGG 0.98478 -202 GCGCAGATGAGTCGCGCCGGTGACGATGCA 25 152 0 GTCGCGCCGG 0.98478 -149 GCGCAGATGAGTCGCGCCGGTGACGATGCA 25 205 0 GTCGCGCCGG 0.98478 -96 CCAACACTGTGGCACAACGATGTATCCACG 31 13 1 GGCACAACGA 0.934156 -72 GGTCTGCAACGGCCCGCCGGCGGAGTCTGG 32 121 0 GGCCCGCCGG 0.936262 -94 GCGCAGCATTAGCACACCGAGAGGGATCGA 34 14 0 AGCACACCGA 0.551294 -56 ********** Masking position 8 Map Score: 49.4393 Number of sites scoring better than the average of aligned sites = 4349 Number in coding regions = 3958 Number in noncoding regions = 391 Number of orfs with sites within 600 bp upstream = 320 Fraction of orfs with sites within 600 bp upstream = 0.0513974 Motif number 13 GTCCCAACATACCGGCCATCACGCACAGGC 1 14 1 ACCGGCCATC 0.72689 -82 GCCATCACGCACAGGCCGACAAGCTCGGTT 1 28 1 ACAGGCCGAC 0.43064 -68 TCGCAACACCGCAACCGAGCTTGTCGGCCT 1 40 0 GCAACCGAGC 0.880014 -56 GTCGGCACCCGGAACCGAGCCGTTT 4 23 1 GGAACCGAGC 0.339924 -15 ACTGGGTCAGGCCGACGAGCACTCGACCAT 5 31 1 GCCGACGAGC 0.881061 -33 GCTCGACCTAACCGCCCAACTCCTTCTCAT 6 21 0 ACCGCCCAAC 0.862862 -280 GCTCGACCTAACCGCCCAACTCCTTCTCAT 6 79 0 ACCGCCCAAC 0.862862 -222 CCAGCCCATCACCGGCGGGCGTCTTGACCT 6 157 0 ACCGGCGGGC 0.791384 -144 GCGGCAGGAGGCAAGCCAGTCTGCTAAACA 9 160 0 GCAAGCCAGT 0.399032 -42 GGTGAGAAGGACCGGCCGGCGT 10 3 0 ACCGGCCGGC 0.54751 -298 CGCGCCTAGCGCCGGTGAGCCGTGCCGGCC 10 240 0 GCCGGTGAGC 0.803171 -61 CTGCAATGGCGCACGCCAGTACGCCCAGGT 12 82 0 GCACGCCAGT 0.121398 -219 GCCGCTGACCGTCGCCCAGCACCCGCTGCA 12 128 0 GTCGCCCAGC 0.881206 -173 CCGCGAGAGCGCAGGCCCGCATCGCCGAGC 12 175 1 GCAGGCCCGC 0.849152 -126 AACGGCGAGTGCCGCCGAGCACGATAACTA 12 222 1 GCCGCCGAGC 0.987413 -79 AGCGGTCGGGGCCAGCCAACCCAAGACCGT 16 45 1 GCCAGCCAAC 0.857726 -52 CAACGGTGTCACAAGCCAGCGCAATGTCCG 17 112 1 ACAAGCCAGC 0.723833 -189 ACGGTCGCTCGCAGCCGGGCACAACGAACA 18 249 1 GCAGCCGGGC 0.902939 -52 ACCACCGCGGGCAGCCCAGCCAACCAGACC 19 25 0 GCAGCCCAGC 0.978365 -83 GGGTCGGCACACCGGTCAACACCACCGCGG 19 45 0 ACCGGTCAAC 0.232777 -63 TGATCACGCCACAACCCACCGACACCGTCA 20 197 1 ACAACCCACC 0.189053 -104 CTCAAACAGCGCAAGCGAACCCGACCGAGT 24 13 1 GCAAGCGAAC 0.631041 -39 CTGCATCGTCACCGGCGCGCATGGTCAGCG 25 257 1 ACCGGCGCGC 0.726137 -44 CGCGGCAACTGCCAGCCAGCCTAAGCGAGC 26 191 0 GCCAGCCAGC 0.962209 -84 CTTTGGTGCGGCCGGCGATCAACTTCGGCT 27 117 1 GCCGGCGATC 0.887701 -142 TTGCCGCGCGGCCGCCGACCTGGCGCGAGC 30 67 0 GCCGCCGACC 0.889356 -29 CGGCCGTCCGGCCACCCATTAGGCTTTGCG 31 62 1 GCCACCCATT 0.121587 -23 GCCAGACTCCGCCGGCGGGCCGTTGCAGAC 32 120 1 GCCGGCGGGC 0.598608 -95 GCGGGCCGTTGCAGACCAACGCTTTCCGCC 32 134 1 GCAGACCAAC 0.474204 -81 CCCGCCGGACAGCACGCGTTCGA 32 202 0 GCCGGACAGC 0.753778 -13 GGCGTGAGGAGGAGCCGAGCAGTCAAGCAC 36 85 0 GGAGCCGAGC 0.702701 -118 GACGATGCACGCCGCGCAGCGGCGTGAGGA 36 105 0 GCCGCGCAGC 0.875304 -98 GGCGTGCATCGTCGCCGAGCTGTGTTGGAC 36 122 1 GTCGCCGAGC 0.846902 -81 GAGGAGCCGAGCAGTCCAACACAGCTCGGC 36 135 0 GCAGTCCAAC 0.338393 -68 GACGATGCACGCCGCGCAGCGGCGTGAGGA 36 163 0 GCCGCGCAGC 0.875304 -40 GGCGTGCATCGTCGCCGAGCTAGGTTATGG 36 180 1 GTCGCCGAGC 0.846902 -23 ********** Masking position 10 Map Score: 45.1587 Number of sites scoring better than the average of aligned sites = 23176 Number in coding regions = 21731 Number in noncoding regions = 1445 Number of orfs with sites within 600 bp upstream = 864 Fraction of orfs with sites within 600 bp upstream = 0.138773 Motif number 14 CCTGTGCGTGATGGCCGGTATGTTGGGACG 1 13 0 ATGGCCGGTA 0.770441 -83 AGGCCGATACATGGGCGGCCTACGAGGTGG 7 11 0 ATGGGCGGCC 0.971568 -146 GTTTAGCAGACTGGCTTGCCTCCTGCCGCG 9 161 1 CTGGCTTGCC 0.873445 -41 GTTGAGCAGTATTGCCGGCACTAGGTGAGA 10 26 0 ATTGCCGGCA 0.791583 -275 TGGTGGGCGATAGGCCGGCACGGCTCACCG 10 228 1 TAGGCCGGCA 0.722135 -73 ATCAGGCAGCATGGCCTGCAATGGCGCACG 12 97 0 ATGGCCTGCA 0.946609 -204 AGTTATCGTGCTCGGCGGCACTCGCCGTTT 12 221 0 CTCGGCGGCA 0.749782 -80 CGGTCTTGGGTTGGCTGGCCCCGACCGCTG 16 44 0 TTGGCTGGCC 0.864824 -53 TAAACAACCACTGGCCGTCAGCCTAGATCA 17 242 0 CTGGCCGTCA 0.788159 -59 GTCTGGTTGGCTGGGCTGCCCGCGGTGGTG 19 26 1 CTGGGCTGCC 0.892001 -82 CGACGGCGGTAGGGCCGGCACCGCCGGGTC 19 70 0 AGGGCCGGCA 0.906971 -38 CTCAATTTGCATGGCCGACAACAGTTTGGC 21 12 0 ATGGCCGACA 0.870086 -62 GGCGAGCGGCATGGCCTACCGGTGATACCC 26 28 0 ATGGCCTACC 0.726885 -247 CTCGCTTAGGCTGGCTGGCAGTTGCCGCGA 26 192 1 CTGGCTGGCA 0.945556 -83 GCCGAAGTTGATCGCCGGCCGCACCAAAGC 27 116 0 ATCGCCGGCC 0.943454 -143 GCAAAGCCTAATGGGTGGCCGGACGGCCGA 31 61 0 ATGGGTGGCC 0.893972 -24 TTTGTAGGACCAGGCCTGCCGCCAGCCTGA 32 79 0 CAGGCCTGCC 0.818686 -136 ATCGGGGTCGACGGCTGGCCGAGTGCTACC 32 171 1 ACGGCTGGCC 0.794841 -44 ********** Masking position 4 Map Score: 18.4208 Number of sites scoring better than the average of aligned sites = 6934 Number in coding regions = 6512 Number in noncoding regions = 422 Number of orfs with sites within 600 bp upstream = 298 Fraction of orfs with sites within 600 bp upstream = 0.0478638 Motif number 15 AGAAATAGCACTCGTGGAGGTCAAGACGCC 6 140 1 CTCGTGGAGG 0.936969 -161 TGGCGCTCACCCCGTTCCGGACTCAGAAAT 6 187 1 CCCGTTCCGG 0.81727 -114 CATTTTGGTCCACGATGAGGAGTGCGGGAG 7 117 1 CACGATGAGG 0.947554 -40 CGGATACGGTCTCGATGAGGCAATATCGGA 9 57 0 CTCGATGAGG 0.968395 -145 TCCTTCTCACCTAGTGCCGGCAATACTGCT 10 22 1 CTAGTGCCGG 0.658287 -279 CCCCGTCGCACTCGGGGCGG 15 1 0 CTCGGGGCGG 0.914662 -87 CGAAAAGGAACTCGATACGGCTAT 17 5 0 CTCGATACGG 0.845622 -296 TCATCTTGGTCTCGTTCCGGGTGAGGTCGA 26 113 0 CTCGTTCCGG 0.943988 -162 ATGCGGTAGGCACCAGGCGGAGGAACC 29 99 1 CACCAGGCGG 0.71673 -17 GGCCGCGCGGCAAGATGAGGGT 30 84 1 CAAGATGAGG 0.715144 -12 CATCTTAGCCCTCGATCAGGCTGGCGGCAG 32 64 1 CTCGATCAGG 0.946913 -151 GAAGGGAGAGCACGATGAGGTGGGGGTCCC 35 38 0 CACGATGAGG 0.947554 -116 ********** Masking position 1 Map Score: 8.4841 Number of sites scoring better than the average of aligned sites = 2115 Number in coding regions = 1957 Number in noncoding regions = 158 Number of orfs with sites within 600 bp upstream = 172 Fraction of orfs with sites within 600 bp upstream = 0.0276261