AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00051_mtub_reg_300.orf -o00051_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 PE_PGRS 277 PE_PGRS #2 Rv0110 147 hypothetical protein Rv0110 #3 Rv0111 180 hypothetical protein Rv0111 #4 gca 281 gca #5 fba 95 fba #6 Rv0728c 30 hypothetical protein Rv0728c #7 argS 300 argS #8 thrB 217 thrB #9 rho 256 rho #10 rpmE 150 rpmE #11 prfA 89 prfA #12 rfe 83 rfe #13 gap 300 gap #14 gmdA 300 gmdA #15 Rv1895 300 hypothetical protein Rv1895 #16 hspX 196 hspX #17 murE 22 murE #18 hypothetical 267 hypothetical protein Rv2160c #19 Rv2161c 102 hypothetical protein Rv2161c #20 PE_PGRS 209 PE_PGRS #21 Rv2166c 300 hypothetical protein Rv2166c #22 pfkA 95 pfkA #23 gatC 84 gatC #24 pmmA 101 pmmA #25 Rv3258c 122 hypothetical protein Rv3258c #26 deoD 64 deoD #27 mrsA 124 mrsA #28 rplM 233 rplM #29 Rv3447c 113 hypothetical protein Rv3447c Motif number 1 CACTCTGCGTGGTGCGCCACCTCGACGCGG 1 71 1 GGTGCGCCAC 0.861713 -207 CCAACCCGCTGGTGCCTCCGCGTCGAGGTG 1 88 0 GGTGCCTCCG 0.568761 -190 CAGCGGGTTGGCCGCGGCGGGCTCGCTCTT 1 107 1 GCCGCGGCGG 0.986288 -171 CGCTCTTGGGTGGTCGCCAGTGATTGTGAC 1 130 1 TGGTCGCCAG 0.868953 -148 GTGACCAGCTGCCGGAGCGGGAATGCGTGT 1 155 1 GCCGGAGCGG 0.538126 -123 ATTGGCGCAACGTGCCCCGGAAGCCGCGCT 1 205 1 CGTGCCCCGG 0.97752 -73 TTGCCTGCGCCGTTGGGCGGGATGCAACAC 2 13 0 CGTTGGGCGG 0.87338 -135 GGTGCGATGAGTGGCGCCAGCTCATCGGAG 2 47 1 GTGGCGCCAG 0.518055 -101 ATCGCCATCCCGGGCGCCGGACCTACGTCC 2 90 1 CGGGCGCCGG 0.504726 -58 GATCACATCGGGTGCAGCGGACGTAGGTCC 2 108 0 GGTGCAGCGG 0.926123 -40 TTTAGATGTGACCGCGTCGGATTCCCCGAA 3 48 0 ACCGCGTCGG 0.688034 -133 ACGATCAAGAGGAGGGGCAGCGACGTATCG 3 84 1 GGAGGGGCAG 0.654241 -97 GGCAGCAAGCACTGCGCCGGACGACGAAGT 3 113 1 ACTGCGCCGG 0.919401 -68 GCTCCGGATGAGCGCGACGGTAACCCTGGA 4 21 1 AGCGCGACGG 0.632014 -261 AACCGTTTGACGAGCCGCGGCCTCGCTGCA 4 104 1 CGAGCCGCGG 0.978549 -178 CGCGCCAGATCGGGGAGCGCCCTCGTTGTG 4 168 0 CGGGGAGCGC 0.587789 -114 CACCTCGTTGCGCGCGCCAGATCGGGGAGC 4 180 0 CGCGCGCCAG 0.969124 -102 TTCTCGACAAACCGCACCGGCCTGAGCATC 4 243 0 ACCGCACCGG 0.746226 -39 GGCCTGTGCGTGATGGCCGGTATGTTGGGA 5 15 0 TGATGGCCGG 0.713402 -81 GGGCGCCACCGTACGCCAGCATTGGCAAA 6 10 1 CGTACGCCAG 0.844305 -21 GCCACCCGCGAGGGCGGCCGCATAGTTGGC 7 49 0 AGGGCGGCCG 0.9366 -252 TACAACAATGTGATCGGCGCCACCCGCGAG 7 67 0 TGATCGGCGC 0.772588 -234 GATCAACCCTTGTGCCCCCGGCAGGATTCG 7 113 1 TGTGCCCCCG 0.873152 -188 AACGTGTCGTCGTGCGCCCCCGTAGCTCAG 7 183 0 CGTGCGCCCC 0.84411 -118 GTTGCGCCATGGGGCCCCGCCAGAGTAGCG 7 210 1 GGGGCCCCGC 0.639366 -91 GGCGATCGCAAGCGCGGCGGAGCCGGGTGC 8 12 1 AGCGCGGCGG 0.981689 -206 GGCGGAGCCGGGTGCGGCGGGTCGGCACGG 8 27 1 GGTGCGGCGG 0.990582 -191 GCCGCGCTTGCGATCGCCACCCAATCCAAA 8 57 0 CGATCGCCAC 0.724597 -161 GGCGATCGCAAGCGCGGCGGAGCCGGGTGC 8 69 1 AGCGCGGCGG 0.981689 -149 GGCGGAGCCGGGTGCGGCGGGTCGGCACGG 8 84 1 GGTGCGGCGG 0.990582 -134 GCCGCGCTTGCGATCGCCACCCAATCCAAA 8 114 0 CGATCGCCAC 0.724597 -104 GGCGATCGCAAGCGCGGCGGAGCCGGGTGC 8 126 1 AGCGCGGCGG 0.981689 -92 GGCGGAGCCGGGTGCGGCGGGTCGGCACGG 8 141 1 GGTGCGGCGG 0.990582 -77 GCCGCGCTTGCGATCGCCACCCAATCCAAA 8 171 0 CGATCGCCAC 0.724597 -47 GGCGATCGCAAGCGCGGCGGAGCCGGGTGC 8 183 1 AGCGCGGCGG 0.981689 -35 GGCGGAGCCGGGTGCGGCGGGTCGGCACGC 8 198 1 GGTGCGGCGG 0.990582 -20 ATAGCCCGCTTCCTGGCCGGAAGCAAGCAA 9 30 0 TCCTGGCCGG 0.667688 -227 ACGGTGATCGCCATCAGCGGCGAATACGGC 9 147 0 CCATCAGCGG 0.622343 -110 GATTTCCTTTCCTTCCCCCGCTGATCACGT 9 236 0 CCTTCCCCCG 0.694595 -21 CCGGCGAGCCGTCTCGCCGGA 10 2 0 GTCTCGCCGG 0.894723 -149 CCGGCGAGACGGCTCGCCGGGAATGTCCGC 10 12 1 GGCTCGCCGG 0.989757 -139 CCAGGTTCTCGGCACGCCACGACGGGCGGC 10 111 1 GGCACGCCAC 0.665832 -40 CCTCTGTGATCGGTGGCCGCCCGTCGTGGC 10 126 0 CGGTGGCCGC 0.721562 -25 GTGCACAGTTCGGGCGTCGGTAAGCCAG 11 9 0 CGGGCGTCGG 0.527038 -81 ACGCCCGAACTGTGCACCAGCGGTACAGGA 11 22 1 TGTGCACCAG 0.566967 -68 CGGTACAGGACGGGCGTCGGTTCGCGTTAG 11 42 1 CGGGCGTCGG 0.527038 -48 GTTCGCGTTAGGGTCCGCGCTCGCGGGAAG 11 61 1 GGGTCCGCGC 0.844276 -29 AGTGCGTGCACGTTCGGCGG 12 1 0 CGTTCGGCGG 0.980814 -83 GAAACGGCCCGGTGCGGCGGGGCTCATGTT 13 67 0 GGTGCGGCGG 0.990582 -234 CCGCCGCGTCCCTACCGCGGACATTGCGCT 13 129 0 CCTACCGCGG 0.711294 -172 CCCACCGATCCCAGCCGCCGCGTCCCTACC 13 143 0 CCAGCCGCCG 0.815613 -158 ATCGGTGGGGTGAGCGCCCGGCTTCTCAAA 13 164 1 TGAGCGCCCG 0.948214 -137 CAAAGCGAGGGGAGCCCCGGGACTCTTACC 13 190 1 GGAGCCCCGG 0.973969 -111 ACACCCGCCGCCTTCGGCCGGTAAGAGTCC 13 209 0 CCTTCGGCCG 0.832155 -92 CGACGCGACCCCCACGCCACCTCCAATCCC 14 70 0 CCCACGCCAC 0.500818 -231 TCTCCTCCTCGGTTCCGCGCGAAACGGCCG 14 107 1 GGTTCCGCGC 0.732289 -194 GACCATTGCGCCTGCGGCCGTTTCGCGCGG 14 121 0 CCTGCGGCCG 0.940264 -180 GGTCACCAACTTGGCCGCGGTGGAGTCTAG 14 147 1 TTGGCCGCGG 0.722595 -154 CACATTTTCCTGGTCGCCCCCGACAACCAG 14 180 1 TGGTCGCCCC 0.774077 -121 ATGTGGGTAGGGAACGCCCGTTCTGCAGCG 14 215 0 GGAACGCCCG 0.847542 -86 CCATCACAGCGGGGCGCCGCTGTCGCTTCA 14 251 0 GGGGCGCCGC 0.525991 -50 CAACCGTGACCGTGCAGCAGACCTACTCCC 15 73 1 CGTGCAGCAG 0.755902 -228 CAACCCTCAATCGGCCCCGGGGCGATGGAC 15 107 1 TCGGCCCCGG 0.898497 -194 TTGATCCGCTGGGGCCCCGCCGGTAGCCTA 15 138 1 GGGGCCCCGC 0.639366 -163 CGTGGTGAACGGCGGGCCGGCAATTCCGAG 15 194 0 GGCGGGCCGG 0.972021 -107 GCGTACCTGCCTGGCACCGGTCTCGGGCGT 15 229 0 CTGGCACCGG 0.796073 -72 GGGGTGATATCGAACAGCGGAGGTTGATC 16 10 0 CGAACAGCGG 0.710847 -187 CCGATCTTTCTGAACGGCGGTTGGCAGACA 16 38 1 TGAACGGCGG 0.857928 -159 GGGCCATTTGTCCGCGCCCGTCGGTGATCC 16 90 0 TCCGCGCCCG 0.935715 -107 CAGAAGTCCCCGAAGCGCGGGCCATTTGTC 16 108 0 CGAAGCGCGG 0.470972 -89 GGCCACGATGGGCTGGTCGGATCAAAGGCA 16 149 1 GGCTGGTCGG 0.547699 -48 CGCCGACGTCGGCCGCCAAACC 18 3 1 CCGACGTCGG 0.443816 -265 GCGCGCAGGATCTGCGCCCGGGTTTGGCGG 18 23 0 TCTGCGCCCG 0.872045 -245 GCGCAGATCCTGCGCGCCGCGATGGATATC 18 36 1 TGCGCGCCGC 0.976171 -232 GCGAGCTTGCCGGGCGGCTGGGCATGAGCA 18 100 1 CGGGCGGCTG 0.777814 -168 GCGGCCTCGACGGTCGCCAGCTGCAGCTGC 18 164 0 CGGTCGCCAG 0.789686 -104 TTCGAACACGCTCACGGCGGCCTCGACGGT 18 180 0 CTCACGGCGG 0.815913 -88 CGGTCCACCCCGGGCGGCGCTGCCATCGCG 18 227 0 CGGGCGGCGC 0.919919 -41 TGCATGAGGGCGCGCACCCGGTCCACCCCG 18 245 0 CGCGCACCCG 0.949738 -23 ACCGCTCGCTCGGGGCCCGGG 19 2 0 CGGGGCCCGG 0.579061 -101 CGGCATTGACAGCACGCCCCAGGCGGACCA 19 41 1 AGCACGCCCC 0.478035 -62 CTTAATGAAAGCCGCCGCCG 19 93 1 GCCGCCGCCG 0.875817 -10 GGCGGCGGCGCCGGTAACGGCGCG 20 5 1 GCGGCGCCGG 0.503299 -205 CCGGTAACGGCGCGCGCCGGTTCGTTTCGG 20 21 1 CGCGCGCCGG 0.933085 -189 TCCGCCAACCCGATCGTCAGCGCGCACATG 20 71 0 CGATCGTCAG 0.466754 -139 ACCTGCGACACCGTCGGCAGGGCTTTCGAT 20 148 0 CCGTCGGCAG 0.831796 -62 GGCTGGGTGAACCGCCCCGGTGAGTCCGGA 21 30 0 ACCGCCCCGG 0.887503 -271 CCCAGCCGGGTCGTCACCGGCTGTCGGCGA 21 53 1 TCGTCACCGG 0.618109 -248 GAGTCCGGTTTGAGCCCCAGTTGTGCCCCA 21 87 1 TGAGCCCCAG 0.749995 -214 GAGCCCCAGTTGTGCCCCACTTGGCCCCAC 21 98 1 TGTGCCCCAC 0.484531 -203 AGAAAACCGCATGTCGCCGGGCAAATGGGT 21 133 0 ATGTCGCCGG 0.646052 -168 CGTAGCCGGGCTAGCCGCGCGCTTCAGTGG 21 168 1 CTAGCCGCGC 0.507459 -133 GCACGGGCGAGGGGCGCCGGATGCGAGTCT 22 25 0 GGGGCGCCGG 0.518186 -71 TCTGTGTCTGCTCGCGCCAGGTCGGCGGCC 22 58 1 CTCGCGCCAG 0.865121 -38 CTCATCTTGCCGCGCGGCCGCCGACCTGGC 22 73 0 CGCGCGGCCG 0.99041 -23 GGCCGGACGGCCGACGCCGGCTGCCGAAAC 23 45 0 CCGACGCCGG 0.505142 -40 AAAGCCTAATGGGTGGCCGGACGGCCGACG 23 59 0 GGGTGGCCGG 0.856894 -26 CTCGCGGCCCCGCCGGATTGCTC 25 4 1 GCGGCCCCGC 0.521348 -119 CCCGCCGGATTGCTCGCCGCGCTACCGACC 25 19 1 TGCTCGCCGC 0.925927 -104 AGCCGTCGGTCGCGGGGCGGGTCGGTAGCG 25 38 0 CGCGGGGCGG 0.979964 -85 CGCAGCTCCTCGTGGAGCCGTCGGTCGCGG 25 53 0 CGTGGAGCCG 0.450106 -70 TTAACCGTTACCATCGGCGCGTGAGCGATT 25 85 0 CCATCGGCGC 0.788096 -38 CCGTCCACGCCGCGATGTTTAAC 25 110 0 TCCACGCCGC 0.654388 -13 ATCTCATCGACGAGCACCCGCTCCCCGGCG 26 20 1 CGAGCACCCG 0.882296 -45 TTAACTGAGCCGCTCGCCGGGGAGCGGGTG 26 34 0 CGCTCGCCGG 0.992175 -31 ACATGCACGCTTGTCGCCCGAAAGTGATG 27 10 0 TTGTCGCCCG 0.522171 -115 TGTTTGTGTGCGCTCGTCGGCGTGTCGGTG 27 37 1 CGCTCGTCGG 0.934313 -88 AGTGGATATGTGCGCAGCCGTCAACTGTGA 27 93 1 TGCGCAGCCG 0.792467 -32 TTCCGGGCCCCGGAGCGCGCAAC 28 4 1 CGGGCCCCGG 0.534471 -230 GTCCCGACGGCTCTCCCCCGTCGGGACCAC 28 44 0 CTCTCCCCCG 0.567147 -190 CCTGCGTGGATGCTCGTCGGTAAGCTGCTC 28 90 1 TGCTCGTCGG 0.806017 -144 GTTGGCGTGCGGTACGCCGGGACCTCGGGT 28 121 1 GGTACGCCGG 0.955204 -113 CGGTCAGGCGTGAACGGCGGGTTGGTCTCG 28 165 0 TGAACGGCGG 0.857928 -69 CGGGGTGCCCCGGGCGCCGGTCAGGCGTGA 28 182 0 CGGGCGCCGG 0.504726 -52 CGGCGCCCGGGGCACCCCGGGATCCACCCG 28 193 1 GGCACCCCGG 0.938312 -41 CTTTATTCTCGGATCACCGGAACGGTAGCC 29 18 1 GGATCACCGG 0.825291 -96 AGCCGGTTCTCGATCGCCCGGTATTCGGTT 29 44 1 CGATCGCCCG 0.945851 -70 CCACAAGCGACTTGCGGCGGATTCTCGCGC 29 76 1 CTTGCGGCGG 0.934067 -38 GCTGGGCGACGGTATGCAGCGC 29 102 0 TGGGCGACGG 0.73631 -12 ********** Masking position 8 Map Score: 191.515 Number of sites scoring better than the average of aligned sites = 64176 Number in coding regions = 59721 Number in noncoding regions = 4455 Number of orfs with sites within 600 bp upstream = 1529 Fraction of orfs with sites within 600 bp upstream = 0.245583 Motif number 2 CAGCGGGTTGGCCGCGGCGGGCTCGCTCTT 1 107 1 GCCGCGGCGG 0.954924 -171 GCTCGCTCTTGGGTGGTCGCCAGTGATTGT 1 127 1 GGGTGGTCGC 0.746065 -151 GTGACCAGCTGCCGGAGCGGGAATGCGTGT 1 155 1 GCCGGAGCGG 0.566354 -123 GCACGTTGCGCCAATTGCGGGGATTCGGCT 1 190 0 CCAATTGCGG 0.652785 -88 GGGACCTCTGCCGTTTTCGGGCAAGCTGTC 1 256 0 CCGTTTTCGG 0.470533 -22 TGCATCCCGCCCAACGGCGCAGGCAACAAT 2 17 1 CCAACGGCGC 0.764845 -131 AATGGTGCGATGAGTGGCGCCAGCTCATCG 2 44 1 TGAGTGGCGC 0.674326 -104 GCTATCGCCATCCCGGGCGCCGGACCTACG 2 87 1 TCCCGGGCGC 0.889374 -61 TTTAGATGTGACCGCGTCGGATTCCCCGAA 3 48 0 ACCGCGTCGG 0.785144 -133 ATCGGCAGCAAGCACTGCGCCGGACGACGA 3 110 1 AGCACTGCGC 0.509276 -71 GCGAGAGCTGAGCCGGGCGGGATTCACTCC 3 161 1 AGCCGGGCGG 0.943084 -20 TTCCAGGGTTACCGTCGCGCTCATCCGGAG 4 22 0 ACCGTCGCGC 0.727337 -260 AACCGTTTGACGAGCCGCGGCCTCGCTGCA 4 104 1 CGAGCCGCGG 0.888351 -178 ATACAAACCCAGACGTGCGGGCTTCAATGT 4 135 0 AGACGTGCGG 0.742451 -147 TATTTACACAACGAGGGCGCTCCCCGATCT 4 162 1 ACGAGGGCGC 0.840245 -120 CTCCCCGATCTGGCGCGCGCAACGAGGTGC 4 181 1 TGGCGCGCGC 0.826094 -101 GCGCGCGCAACGAGGTGCGCACTATCCATT 4 193 1 CGAGGTGCGC 0.870773 -89 TGATGCTCAGGCCGGTGCGGTTTGTCGAGA 4 242 1 GCCGGTGCGG 0.948101 -40 GCCGACAAGCTCGGTTGCGGTGTTGCGATA 5 42 1 TCGGTTGCGG 0.728455 -54 ATGCTGGCGTACGGTGGCGCCC 6 3 0 ACGGTGGCGC 0.81474 -28 GGCGCCACCCGCGAGGGCGGCCGCATAGTT 7 52 0 GCGAGGGCGG 0.569681 -249 TACAACAATGTGATCGGCGCCACCCGCGAG 7 67 0 TGATCGGCGC 0.409183 -234 CCCCTGAGCTACGGGGGCGCACGACGACAC 7 180 1 ACGGGGGCGC 0.922792 -121 CTGGCGGGGCCCCATGGCGCAACGTGTCGT 7 203 0 CCCATGGCGC 0.859847 -98 GCCAGAGTAGCGCATCGCGGCTACCCACTG 7 228 1 CGCATCGCGG 0.870065 -73 GGGCTTCGAATCCGTTGCGGTGGTCAGTGG 7 252 0 TCCGTTGCGG 0.737732 -49 TGGCGATCGCAAGCGCGGCGGAGCCGGG 8 9 1 GCAAGCGCGG 0.847901 -209 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 24 1 CCGGGTGCGG 0.958142 -194 GGTGGCGATCGCAAGCGCGGCGGAGCCGGG 8 66 1 GCAAGCGCGG 0.847901 -152 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 81 1 CCGGGTGCGG 0.958142 -137 GGTGGCGATCGCAAGCGCGGCGGAGCCGGG 8 123 1 GCAAGCGCGG 0.847901 -95 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 138 1 CCGGGTGCGG 0.958142 -80 GGTGGCGATCGCAAGCGCGGCGGAGCCGGG 8 180 1 GCAAGCGCGG 0.847901 -38 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 195 1 CCGGGTGCGG 0.958142 -23 TTCTTGTGGACGAGGTTCGCCGTATTCGCC 9 129 1 CGAGGTTCGC 0.71711 -128 AGCCAAATCGCCGAGTGCGCCAATCATCGA 9 184 0 CCGAGTGCGC 0.839093 -73 TTCCCGGCGAGCCGTCTCGCCGGA 10 5 0 GCCGTCTCGC 0.686601 -146 AATGTCCGCACGCATCTCGGTGTTTGGGGT 10 33 1 CGCATCTCGG 0.715836 -118 GAACCGGACCAGGTTCTCGGCACGCCACGA 10 103 1 AGGTTCTCGG 0.334834 -48 CGGCACGCCACGACGGGCGGCCACCGATCA 10 120 1 CGACGGGCGG 0.956312 -31 GTGCACAGTTCGGGCGTCGGTAAGCCAG 11 9 0 CGGGCGTCGG 0.914939 -81 CGGTACAGGACGGGCGTCGGTTCGCGTTAG 11 42 1 CGGGCGTCGG 0.914939 -48 CCTTCTTCCCGCGAGCGCGGACCCTAACGC 11 65 0 GCGAGCGCGG 0.517592 -25 CGCAGTGCGTGCACGTTCGGCGG 12 4 0 GCACGTTCGG 0.688462 -80 CGCAGCTGTTGCACGTTCGGCGAGTGTTCA 12 52 1 GCACGTTCGG 0.688462 -32 TTGGAAACGGCCCGGTGCGGCGGGGCTCAT 13 70 0 CCCGGTGCGG 0.9602 -231 CGCTTTGAGAAGCCGGGCGCTCACCCCACC 13 167 0 AGCCGGGCGC 0.904057 -134 GTGACACCCGCCGCCTTCGGCCGGTAAGAG 13 212 0 CCGCCTTCGG 0.672324 -89 AGTTGGTCGTGGCTGTGCGGGATTGGAGGT 14 52 1 GGCTGTGCGG 0.845302 -249 GGAGGTGGCGTGGGGGTCGCGTCGTATGGA 14 76 1 TGGGGGTCGC 0.81503 -225 GTATGGATTCTCCTCCTCGGTTCCGCGCGA 14 99 1 TCCTCCTCGG 0.350486 -202 GGTGACCATTGCGCCTGCGGCCGTTTCGCG 14 124 0 GCGCCTGCGG 0.785683 -177 GAGGCTAGACTCCACCGCGGCCAAGTTGGT 14 151 0 TCCACCGCGG 0.703608 -150 CCTCACATTTTCCTGGTCGCCCCCGACAAC 14 177 1 TCCTGGTCGC 0.546357 -124 CCCGACAACCAGGAGGTCGCTGCAGAACGG 14 198 1 AGGAGGTCGC 0.690193 -103 CAGCCATCACAGCGGGGCGCCGCTGTCGCT 14 254 0 AGCGGGGCGC 0.930719 -47 CGCCTGGTCGTGGTTGTCGGACACTTTGGC 15 12 0 TGGTTGTCGG 0.443066 -289 TACGCTATGCCGAGTCTCGGAATTGCCGGC 15 179 1 CGAGTCTCGG 0.714188 -122 TTGAACGTGGTGAACGGCGGGCCGGCAATT 15 199 0 TGAACGGCGG 0.668439 -102 CTGCCTGGCACCGGTCTCGGGCGTTTGAAC 15 223 0 CCGGTCTCGG 0.827469 -78 TTGAGACCCATGAGGTTCGCGTACCTGCCT 15 247 0 TGAGGTTCGC 0.445617 -54 CCGATCTTTCTGAACGGCGGTTGGCAGACA 16 38 1 TGAACGGCGG 0.668439 -159 AGTGGATCACCGACGGGCGCGGACAAATGG 16 87 1 CGACGGGCGC 0.925665 -110 CAGAAGTCCCCGAAGCGCGGGCCATTTGTC 16 108 0 CGAAGCGCGG 0.893025 -89 GGCCACGATGGGCTGGTCGGATCAAAGGCA 16 149 1 GGCTGGTCGG 0.844177 -48 GTGTGCGCGCCCTGTCGGTAGG 17 9 1 GCCCTGTCGG 0.82342 -14 CGCCGACGTCGGCCGCCAAACC 18 3 1 CCGACGTCGG 0.484306 -265 CGGCCGCCAAACCCGGGCGCAGATCCTGCG 18 20 1 ACCCGGGCGC 0.897894 -248 CGATATCCATCGCGGCGCGCAGGATCTGCG 18 37 0 CGCGGCGCGC 0.957274 -231 CTCGGTGAAGGGGCTCTCGGGGCTGTCCAT 18 68 1 GGGCTCTCGG 0.733563 -200 TCGGCGAGCTTGCCGGGCGGCTGGGCATGA 18 97 1 TGCCGGGCGG 0.938074 -171 GGCCTGTTCCGGCATTTCGGCGCCAAGGAG 18 135 1 GGCATTTCGG 0.555797 -133 ACGGCGGCCTCGACGGTCGCCAGCTGCAGC 18 167 0 CGACGGTCGC 0.824118 -101 CGCGGGAGCCACGACCTCGGCTTCGAACAC 18 201 0 ACGACCTCGG 0.470334 -67 GGGCGGCGCTGCCATCGCGGGAGCCACGAC 18 216 0 GCCATCGCGG 0.825255 -52 ACCCGGTCCACCCCGGGCGGCGCTGCCATC 18 230 0 CCCCGGGCGG 0.961336 -38 CCGGGGTGGACCGGGTGCGCGCCCTCATGC 18 244 1 CCGGGTGCGC 0.928848 -24 GGCGGCGGCGCCGGTAACGGC 20 2 1 GCGGCGGCGC 0.901302 -208 GCGCCGGTAACGGCGCGCGCCGGTTCGTTT 20 18 1 CGGCGCGCGC 0.910583 -192 CTTTTGCGCAACATGTGCGCGCTGACGATC 20 60 1 ACATGTGCGC 0.37859 -150 GCTGACGATCGGGTTGGCGGAAGCTCTTTT 20 80 1 GGGTTGGCGG 0.834708 -130 ATCTGAAAACAGGATGTCGCACTTTCCTTA 20 109 0 AGGATGTCGC 0.450305 -101 AGCCCTGCCGACGGTGTCGCAGGTCTGGGA 20 154 1 ACGGTGTCGC 0.623276 -56 TGAGCTGGTCGGAGGTGCGGG 20 199 1 GGAGGTGCGG 0.899724 -11 CTCCGGACTCACCGGGGCGGTTCACCCAGC 21 29 1 ACCGGGGCGG 0.956623 -272 GGGTCGTCACCGGCTGTCGGCGATATTGAG 21 60 1 CGGCTGTCGG 0.862584 -241 CTCAGAAAACCGCATGTCGCCGGGCAAATG 21 136 0 CGCATGTCGC 0.712352 -165 TAGCCGGGCTAGCCGCGCGCTTCAGTGGTA 21 170 1 AGCCGCGCGC 0.84498 -131 ATCGCACGGGCGAGGGGCGCCGGATGCGAG 22 28 0 CGAGGGGCGC 0.946691 -68 GTCTGCTCGCGCCAGGTCGGCGGCCGCGCG 22 63 1 GCCAGGTCGG 0.89108 -33 CCAGGTCGGCGGCCGCGCGGCAAGATGAGG 22 74 1 GGCCGCGCGG 0.954355 -22 ATGTATCCACGGCGTTTCGGCAGCCGGCGT 23 32 1 GGCGTTTCGG 0.730234 -53 GTTTCGGCAGCCGGCGTCGGCCGTCCGGCC 23 45 1 CCGGCGTCGG 0.881819 -40 CCACCCATTAGGCTTTGCGGTC 23 73 1 GGCTTTGCGG 0.667684 -12 TCGGCCCGCGTCGTTCGCGGGCCGATAGGC 24 36 1 TCGTTCGCGG 0.533138 -66 GCGGGCCGATAGGCTGGCGGCCAAGAGTCG 24 52 1 AGGCTGGCGG 0.853168 -50 AGCCGTCGGTCGCGGGGCGGGTCGGTAGCG 25 38 0 CGCGGGGCGG 0.98553 -85 GGCTCCACGAGGAGCTGCGGGAATCGCTCA 25 64 1 GGAGCTGCGG 0.798062 -59 TTAACCGTTACCATCGGCGCGTGAGCGATT 25 85 0 CCATCGGCGC 0.670902 -38 AGCCGCTCGCCGGGGAGCGGGTGCTCGTCG 26 27 0 CGGGGAGCGG 0.637929 -38 AGCTTAACTGAGCCGCTCGCCGGGGAGCGG 26 37 0 AGCCGCTCGC 0.672193 -28 CATCACTTTCGGGCGACAAGCG 27 3 1 TCACTTTCGG 0.253912 -122 CAAACATGCACGCTTGTCGCCCGAAAGTGA 27 13 0 CGCTTGTCGC 0.599361 -112 TGCGCTCGTCGGCGTGTCGGTGAACCAACA 27 45 1 GGCGTGTCGG 0.877059 -80 TTCACAGTTGACGGCTGCGCACATATCCAC 27 94 0 ACGGCTGCGC 0.666548 -31 TTCCGGGCCCCGGAGCGCGCAACAGACCCC 28 11 1 CGGAGCGCGC 0.897897 -223 CGACGGCTCTCCCCCGTCGGGACCACACAG 28 40 0 CCCCCGTCGG 0.863762 -194 CCTGCGTGGATGCTCGTCGGTAAGCTGCTC 28 90 1 TGCTCGTCGG 0.499811 -144 CTCGTCGGTAAGCTGCTCGGTTGGCGTGCG 28 102 1 AGCTGCTCGG 0.589404 -132 GCTGCTCGGTTGGCGTGCGGTACGCCGGGA 28 113 1 TGGCGTGCGG 0.845718 -121 GCGGTACGCCGGGACCTCGGGTCAATGTCG 28 129 1 GGGACCTCGG 0.67889 -105 GGACCTCGGGTCAATGTCGGTTCGCCGAGA 28 140 1 TCAATGTCGG 0.371489 -94 CGGTCAGGCGTGAACGGCGGGTTGGTCTCG 28 165 0 TGAACGGCGG 0.668439 -69 TCCCGGGGTGCCCCGGGCGCCGGTCAGGCG 28 185 0 CCCCGGGCGC 0.9495 -49 TGTCCACAAGCGACTTGCGGCGGATTCTCG 29 73 1 CGACTTGCGG 0.753453 -41 GACTTGCGGCGGATTCTCGCGCTGCATACC 29 84 1 GGATTCTCGC 0.231039 -30 ********** Masking position 8 Map Score: 169.199 Number of sites scoring better than the average of aligned sites = 81764 Number in coding regions = 76098 Number in noncoding regions = 5666 Number of orfs with sites within 600 bp upstream = 1645 Fraction of orfs with sites within 600 bp upstream = 0.264215 Motif number 3 GGCACCAGCGGGTTGGCCGCGGCGGGCTCGCT 1 102 1 GGTGGCGCGG 0.977852 -176 GCCGCGGCGGGCTCGCTCTTGGGTGGTCGCCA 1 117 1 GCCGCCTTGG 0.472205 -161 CGGCTTCCGGGGCACGTTGCGCCAATTGCGGG 1 199 0 GGACGTGCGC 0.802784 -79 AGGAGGGGCAGCGACGTATCGGCAGCAAGCAC 3 93 1 GCACGATCGG 0.670169 -88 CGCGCTCATCCGGAGCACACGGCGGA 4 5 0 CGAGCCACGG 0.686771 -277 AATGTTTGCAGCGAGGCCGCGGCTCGTCAAAC 4 108 0 GCAGGCGCGG 0.50687 -174 GTGCGCACCTCGTTGCGCGCGCCAGATCGGGG 4 183 0 CGTGCCGCGC 0.854699 -99 AGGCCGACAAGCTCGGTTGCGGTGTTGCGATA 5 40 1 GCCGGTGCGG 0.921796 -56 CCAACTATGCGGCCGCCCTCGCGGGTGGCGCC 7 50 1 GGCGCCTCGC 0.928951 -251 TACCCACTGACCACCGCAACGGATTCGAAGCC 7 249 1 CCCCGAACGG 0.858592 -52 GCCGCACCCGGCTCCGCCGCGCTTGCGATCGC 8 13 0 GCCCGCGCGC 0.982165 -205 CGGGTGCGGCGGGTCGGCACGGTTTGGATTGG 8 35 1 GGTCGCACGG 0.955972 -183 GCCGCACCCGGCTCCGCCGCGCTTGCGATCGC 8 70 0 GCCCGCGCGC 0.982165 -148 CGGGTGCGGCGGGTCGGCACGGTTTGGATTGG 8 92 1 GGTCGCACGG 0.955972 -126 GCCGCACCCGGCTCCGCCGCGCTTGCGATCGC 8 127 0 GCCCGCGCGC 0.982165 -91 CGGGTGCGGCGGGTCGGCACGGTTTGGATTGG 8 149 1 GGTCGCACGG 0.955972 -69 GCCGCACCCGGCTCCGCCGCGCTTGCGATCGC 8 184 0 GCCCGCGCGC 0.982165 -34 CGGGTGCGGCGGGTCGGCACGC 8 206 1 GGTCGCACGC 0.944696 -12 TCCGCAAGGTTGCGGGGGTTTGCTT 9 4 1 GCAGGTGCGG 0.712104 -253 CTTGCTTCCGGCCAGGAAGCGGGCTATCCTCG 9 33 1 GCAGGAGCGG 0.846613 -224 GATCGGTGGCCGCCCGTCGTGGCGTGCCGAGA 10 117 0 CGCCGCGTGG 0.880179 -34 CCGCGAGCGCGGACCCTAACGCGAACCGACGC 11 55 0 GGCCCAACGC 0.873652 -35 ATTTGGAAACGGCCCGGTGCGGCGGGGCTCAT 13 70 0 GGCCGTGCGG 0.961 -231 GGGACGCGGCGGCTGGGATCGGTGGGGTGAGC 13 147 1 GGTGGATCGG 0.847781 -154 AGAGTCCCGGGGCTCCCCTCGCTTTGAGAAGC 13 184 0 GGTCCCTCGC 0.820752 -117 CAGTGACACCCGCCGCCTTCGGCCGGTAAGAG 13 212 0 CGCGCTTCGG 0.565148 -89 CCATACGACGCGACCCCCACGCCACCTCCAAT 14 73 0 CGCCCCACGC 0.898994 -228 ATTGCGCCTGCGGCCGTTTCGCGCGGAACCGA 14 115 0 CGCCGTTCGC 0.757455 -186 AGTAGATGTGGGTAGGGAACGCCCGTTCTGCA 14 218 0 GGAGGAACGC 0.790753 -83 CAGAGTGGTCGCCTGGTCGTGGTTGTCGGACA 15 19 0 GCTGGCGTGG 0.705151 -282 TAGGTCTGCTGCACGGTCACGGTTGGGTGATC 15 66 0 GCCGGCACGG 0.965523 -235 GCTACCGGCGGGGCCCCAGCGGATCAAGGTCC 15 133 0 GGCCCAGCGG 0.951212 -168 AGTGGATCACCGACGGGCGCGGACAAATGGCC 16 87 1 CGCGGCGCGG 0.980338 -110 GCCTCCTAATCGATGGAAACGGATGCCTTTGA 16 170 0 CGTGGAACGG 0.777495 -27 TGCCGGAACAGGCCCGACTTGCTCATGCCCAG 18 117 0 GGCCGCTTGC 0.805896 -151 CTGCTCCTTGGCGCCGAAATGCCGGAACAGGC 18 136 0 GCCCGAATGC 0.511592 -132 GTGGCTCCCGCGATGGCAGCGCCGCCCGGGGT 18 219 1 CGTGGAGCGC 0.859182 -49 GACCGGGTGCGCGCCCTCATGCATGC 18 252 1 GCCCCCATGC 0.50228 -16 CCCGGGCCCCGAGCGAGCGGTCACGCAATC 19 9 1 CCAGCAGCGG 0.467004 -94 GGCGGCGGCGCCGGTAACGGCGCGCGCCGG 20 9 1 CGCGGAACGG 0.915488 -201 GGCGCGCGCCGGTTCGTTTCGGCTCCAACAAC 20 29 1 GGTCGTTCGG 0.729918 -181 TGCCCCACTTGGCCCCACTTGCCACCCATTTG 21 110 1 GGCCCCTTGC 0.595555 -191 CGCGCCAGGTCGGCGGCCGCGCGGCAAGATGA 22 70 1 CGCGGCGCGC 0.809213 -26 CGAACGACGCGGGCCGAATCGGTCTCGAACAG 24 21 0 GGCCGATCGG 0.949222 -81 TCGCGGGGCGGGTCGGTAGCGCGGCGAGCAAT 25 27 0 GGCGGAGCGC 0.975593 -96 CTCGTGGAGCCGTCGGTCGCGGGGCGGGTCGG 25 43 0 CGCGGCGCGG 0.984938 -80 GCTCACGCGCCGATGGTAACGGTTAAACATCG 25 89 1 CGTGGAACGG 0.777495 -34 TTCCGGGCCCCGGAGCGCGCAACAGACC 28 7 1 GCCCGAGCGC 0.957287 -227 GAGGTCCCGGCGTACCGCACGCCAACCGAGCA 28 115 0 CGACCCACGC 0.651448 -119 GTGAACGGCGGGTTGGTCTCGGCGAACCGACA 28 154 0 GGTGGCTCGG 0.938076 -80 ** *** ***** Masking position 11 Map Score: 99.4394 Number of sites scoring better than the average of aligned sites = 31699 Number in coding regions = 29515 Number in noncoding regions = 2184 Number of orfs with sites within 600 bp upstream = 1081 Fraction of orfs with sites within 600 bp upstream = 0.173627 Motif number 4 CGCTCTTGGGTGGTCGCCAGTGATTGTGAC 1 130 1 TGGTCGCCAG 0.641633 -148 CAATTGCGGGGATTCGGCTGTCCAACACGC 1 179 0 GATTCGGCTG 0.535882 -99 TCAAAACCGATAGCCGCTTGTCTTCGCGTG 3 16 1 TAGCCGCTTG 0.692475 -165 AGCGAGAGCTGAGCCGGGCGGGATTCACTC 3 160 1 GAGCCGGGCG 0.783366 -21 GGGTGGATCGGAGTCGTCAGGAGGAACGTT 5 74 1 GAGTCGTCAG 0.515231 -22 AAGCGCGGCGGAGCCGGGTGCGGCGGGTCG 8 21 1 GAGCCGGGTG 0.948311 -197 CGGGTGCGGCGGGTCGGCACGGTTTGGATT 8 35 1 GGGTCGGCAC 0.938215 -183 AAGCGCGGCGGAGCCGGGTGCGGCGGGTCG 8 78 1 GAGCCGGGTG 0.948311 -140 CGGGTGCGGCGGGTCGGCACGGTTTGGATT 8 92 1 GGGTCGGCAC 0.938215 -126 AAGCGCGGCGGAGCCGGGTGCGGCGGGTCG 8 135 1 GAGCCGGGTG 0.948311 -83 CGGGTGCGGCGGGTCGGCACGGTTTGGATT 8 149 1 GGGTCGGCAC 0.938215 -69 AAGCGCGGCGGAGCCGGGTGCGGCGGGTCG 8 192 1 GAGCCGGGTG 0.948311 -26 CGGGTGCGGCGGGTCGGCACGC 8 206 1 GGGTCGGCAC 0.938215 -12 GCCCGCTTCCTGGCCGGAAGCAAGCAAACC 9 27 0 TGGCCGGAAG 0.451577 -230 CATTCCCGGCGAGCCGTCTCGCCGGA 10 7 0 GAGCCGTCTC 0.65696 -144 CCGAGAACCTGGTCCGGTTCCAACTCGTTG 10 93 0 GGTCCGGTTC 0.798723 -58 TACAGGACGGGCGTCGGTTCGCGTTAGGGT 11 45 1 GCGTCGGTTC 0.648867 -45 CCGCCGCACCGGGCCGTTTCCAAATGGTGA 13 77 1 GGGCCGTTTC 0.872536 -224 AAACAACCACTGGCCGTCAGCCTAGATCAG 13 241 0 TGGCCGTCAG 0.613776 -60 GGTGGCGTGGGGGTCGCGTCGTATGGATTC 14 79 1 GGGTCGCGTC 0.882281 -222 TGGAACAGAGTGGTCGCCTGGTCGTGGTTG 15 26 0 TGGTCGCCTG 0.765812 -275 CATCGCCCCGGGGCCGATTGAGGGTTGATC 15 104 0 GGGCCGATTG 0.862801 -197 GGTGAACGGCGGGCCGGCAATTCCGAGACT 15 191 0 GGGCCGGCAA 0.734434 -110 GGGGACCATTGACCCTGTTGTCTGCCAACC 16 56 0 GACCCTGTTG 0.214665 -141 TGAGCAAGTCGGGCCTGTTCCGGCATTTCG 18 124 1 GGGCCTGTTC 0.779247 -144 CGCCCGGGGTGGACCGGGTGCGCGCCCTCA 18 241 1 GGACCGGGTG 0.72886 -27 GTTTAACGATGGTCCGCCTGGGGCGTGCTG 19 50 0 GGTCCGCCTG 0.800818 -53 GTAACGGCGCGCGCCGGTTCGTTTCGGCTC 20 24 1 GCGCCGGTTC 0.842312 -186 CGGACTCACCGGGGCGGTTCACCCAGCCGG 21 32 1 GGGGCGGTTC 0.717635 -269 AGCCGGTGACGACCCGGCTGGGTGAACCGC 21 45 0 GACCCGGCTG 0.79259 -256 AGACCGATTCGGCCCGCGTCGTTCGCGGGC 24 28 1 GGCCCGCGTC 0.745245 -74 CGTCGTTCGCGGGCCGATAGGCTGGCGGCC 24 44 1 GGGCCGATAG 0.775234 -58 CTGCGACTCTTGGCCGCCAGCCTATCGGCC 24 55 0 TGGCCGCCAG 0.846827 -47 CAATCCGGCGGGGCCGCGAG 25 1 0 GGGCCGCGAG 0.956379 -122 GTCGCGGGGCGGGTCGGTAGCGCGGCGAGC 25 30 0 GGGTCGGTAG 0.95021 -93 GAGCTTAACTGAGCCGCTCGCCGGGGAGCG 26 38 0 GAGCCGCTCG 0.669157 -27 GACCACACAGGGGTCTGTTGCGCGCTCCGG 28 20 0 GGGTCTGTTG 0.661476 -214 GTCGGTAAGCTGCTCGGTTGGCGTGCGGTA 28 105 1 TGCTCGGTTG 0.433319 -129 ACCGGAACGGTAGCCGGTTCTCGATCGCCC 29 33 1 TAGCCGGTTC 0.743743 -81 ********** Masking position 5 Map Score: 41.5867 Number of sites scoring better than the average of aligned sites = 16804 Number in coding regions = 15556 Number in noncoding regions = 1248 Number of orfs with sites within 600 bp upstream = 819 Fraction of orfs with sites within 600 bp upstream = 0.131545 Motif number 5 CGAGCCCGCCGCGGCCAACCCGCTGGTGCCTC 1 100 0 GCGGCCACCG 0.968698 -178 ACAATCACTGGCGACCACCCAAGAGCGAGCCC 1 125 0 GCGACCACAA 0.537917 -153 TTGGCTCCTAGCCACCAGACAGCTTGCCCGAA 1 239 1 GCCACCACAG 0.943508 -39 GCGACGTATCGGCAGCAAGCACTGCGCCGGAC 3 103 1 GGCAGCACAC 0.77947 -78 CAACGACACAGCCAGCACACAGCACAATTCCA 4 47 0 GCCAGCACAG 0.938729 -235 TTTACACAACGAGGGCGCTCCCCGATCTGGCG 4 164 1 GAGGGCGCCC 0.529133 -118 CAACATACCGGCCATCACGCACAGGCCGACAA 5 18 1 GCCATCACAC 0.631863 -78 GGGCGCCACCGTACGCCAGCATTGGC 6 5 1 GCCACCGCGC 0.857457 -26 AGCCAACTATGCGGCCGCCCTCGCGGGTGGCG 7 48 1 GCGGCCGCTC 0.625822 -253 CCTCGCGGGTGGCGCCGATCACATTGTTGTAG 7 66 1 GGCGCCGCAC 0.835282 -235 GTAGCGCATCGCGGCTACCCACTGACCACCGC 7 234 1 GCGGCTACAC 0.60208 -67 CTGGCCGGAAGCAAGCAAACCCCCGCAACCTT 9 16 0 GCAAGCACCC 0.502932 -241 GGCTGTCCTAGCGGCAAGGCAGTACGTATGCA 9 89 0 GCGGCAACAG 0.333795 -168 TTCCCGGCGAGCCGTCTCGCCGGA 10 3 0 GCCGTCTCCG 0.11471 -148 CGAGATGCGTGCGGACATTCCCGGCGAGCCGT 10 20 0 GCGGACACCC 0.558455 -131 ACGACGGGCGGCCACCGATCACAGAGGGCAGC 10 129 1 GCCACCGCAC 0.967965 -22 CCTTCTTCCCGCGAGCGCGGACCCTAACGCGA 11 63 0 GCGAGCGGAC 0.717499 -27 CCGCCGAACGTGCACGCACTGCGAAGATT 12 8 1 ACGTGCACAC 0.196533 -76 TGCACGTTCGGCGAGTGTTCAGCTCTCAGGTT 12 61 1 GCGAGTGCAG 0.668309 -23 GGGCGCTCACCCCACCGATCCCAGCCGCCGCG 13 151 0 CCCACCGCCC 0.638133 -150 CTTTGAGAAGCCGGGCGCTCACCCCACCGATC 13 163 0 CCGGGCGCAC 0.591115 -138 CCTGGTTGTCGGGGGCGACCAGGAAAATGTGA 14 179 0 GGGGGCGCAG 0.877319 -122 TCGCTGCAGAACGGGCGTTCCCTACCCACATC 14 214 1 ACGGGCGCCC 0.833551 -87 CCACGACCAGGCGACCACTCTGTTCCACCACG 15 29 1 GCGACCACTG 0.730361 -272 GTTCCACCACGCGATCGATCACCCAACCGTGA 15 50 1 GCGATCGCAC 0.80911 -251 TCACCCAACCGTGACCGTGCAGCAGACCTACT 15 68 1 GTGACCGCAG 0.649916 -233 TCTCGGAATTGCCGGCCCGCCGTTCACCACGT 15 193 1 GCCGGCCCCG 0.543637 -108 TTGTCTGCCAACCGCCGTTCAGAAAGATCGGG 16 37 0 ACCGCCGCAG 0.680983 -160 GCCGACGTCGGCCGCCAAACCCGGGCGCAGAT 18 12 1 GCCGCCACCC 0.95218 -256 CTGTCCATCGGCGAGCTTGCCGGGCGGCTGGG 18 90 1 GCGAGCTCCG 0.752967 -178 GCTGCAGCTGGCGACCGTCGAGGCCGCCGTGA 18 167 1 GCGACCGGAG 0.694506 -101 GGGGTGGACCGGGTGCGCGCCCTCATGCATGC 18 246 1 GGGTGCGCCC 0.420926 -22 CGGGCCCCGAGCGAGCGGTCACGCAATCCGGC 19 13 1 GCGAGCGCAC 0.755324 -90 ATCCGGCATTGACAGCACGCCCCAGGCGGACC 19 38 1 GACAGCACCC 0.520098 -65 CAACCCGATCGTCAGCGCGCACATGTTGCGCA 20 64 0 GTCAGCGCAC 0.519499 -146 ACTGAAGCGCGCGGCTAGCCCGGCTACGACCT 21 164 0 GCGGCTACCG 0.577425 -137 AAACACCTCAGCCACCATACCCCACAATCCCC 21 248 0 GCCACCACCC 0.956963 -53 CGGCGAGCAGACACAGACTCGCAT 22 3 1 GCGAGCACAC 0.971732 -93 CCGACCTGGCGCGAGCAGACACAGAATCGCAC 22 51 0 GCGAGCACAC 0.971732 -45 CGCCAGGTCGGCGGCCGCGCGGCAAGATGAGG 22 72 1 GCGGCCGCGG 0.890407 -24 CGGTAGCGCGGCGAGCAATCCGGCGGGGCCGC 25 14 0 GCGAGCACCG 0.96936 -109 TGCTCGCCGCGCTACCGACCCGCCCCGCGACC 25 29 1 GCTACCGCCG 0.711834 -94 TATCTCATCGACGAGCACCCGCTCCCCGGCGA 26 19 1 ACGAGCACGC 0.38607 -46 CGACACGCCGACGAGCGCACACAAACATGCAC 27 32 0 ACGAGCGCAC 0.837495 -93 CTCCCCCGTCGGGACCACACAGGGGTCTGTTG 28 30 0 GGGACCACAG 0.857991 -204 GAGAGCCGTCGGGACCACACAGTCATTTTGAC 28 59 1 GGGACCACAG 0.857991 -175 CAGCTTACCGACGAGCATCCACGCAGGTCAAA 28 85 0 ACGAGCACAC 0.768271 -149 TCGGTTCGCCGAGACCAACCCGCCGTTCACGC 28 156 1 GAGACCACCG 0.649943 -78 GGGTGCCCCGGGCGCCGGTCAGGCGTGAACGG 28 178 0 GGCGCCGCAG 0.809584 -56 TCGAGAACCGGCTACCGTTCCGGTGATCCGAG 29 25 0 GCTACCGCCG 0.711847 -89 ******* *** Masking position 10 Map Score: 59.1776 Number of sites scoring better than the average of aligned sites = 21605 Number in coding regions = 20081 Number in noncoding regions = 1524 Number of orfs with sites within 600 bp upstream = 907 Fraction of orfs with sites within 600 bp upstream = 0.145679 Motif number 6 AGTCGCCCACCTGCTATCGCCATCCCGGGC 2 75 1 CTGCTATCGC 0.908833 -73 CGAAGACAAGCGGCTATCGGTTTTGATGTG 3 12 0 CGGCTATCGG 0.398596 -169 TCAGCTCTCGCTGTTAGCGCGCCCTGACCA 3 142 0 CTGTTAGCGC 0.82414 -39 GAATTGTGCTGTGTGCTGGCTGTGTCGTTG 4 49 1 GTGTGCTGGC 0.386134 -233 CGCGCCAGATCGGGGAGCGCCCTCGTTGTG 4 168 0 CGGGGAGCGC 0.794675 -114 GCGCACCTCGTTGCGCGCGCCAGATCGGGG 4 183 0 TTGCGCGCGC 0.970817 -99 TCGGCGCCACCCGCGAGGGCGGCCGCATAG 7 54 0 CCGCGAGGGC 0.821459 -247 TCCGCCGCGCTTGCGATCGCCA 8 3 0 TTGCGATCGC 0.964726 -215 TCCGCCGCGCTTGCGATCGCCACCCAATCC 8 60 0 TTGCGATCGC 0.964726 -158 TCCGCCGCGCTTGCGATCGCCACCCAATCC 8 117 0 TTGCGATCGC 0.964726 -101 TCCGCCGCGCTTGCGATCGCCACCCAATCC 8 174 0 TTGCGATCGC 0.964726 -44 TATGCAGATGCTGCGATTGCTGGACGGCTC 9 65 0 CTGCGATTGC 0.751872 -192 GACTTTGCAACGGTGATCGCCATCAGCGGC 9 156 0 CGGTGATCGC 0.91726 -101 GCTGCCCTCTGTGATCGGTGGCCGCCCG 10 133 0 CTGTGATCGG 0.775081 -18 AACCTTCTTCCCGCGAGCGCGGACCCTAAC 11 67 0 CCGCGAGCGC 0.911296 -23 ACCGCGGACATTGCGCTGGCTTGTGACACC 13 116 0 TTGCGCTGGC 0.823014 -185 CGGCGCCCCGCTGTGATGGCTGAGCATGAC 14 262 1 CTGTGATGGC 0.832627 -39 GTGTGCGCGCCCTGTCGGTA 17 1 1 GTGTGCGCGC 0.81886 -22 CCGGGCGGCGCTGCCATCGCGGGAGCCACG 18 218 0 CTGCCATCGC 0.817887 -50 CGAAACGAACCGGCGCGCGCCGTTACCGGC 20 20 0 CGGCGCGCGC 0.974265 -190 TTTGCGCAACATGTGCGCGCTGACGATCGG 20 62 1 ATGTGCGCGC 0.62413 -148 GATTCTGTGTCTGCTCGCGCCAGGTCGGCG 22 55 1 CTGCTCGCGC 0.920722 -41 ACCCGCTCCCCGGCGAGCGGCTCAGTTAAG 26 35 1 CGGCGAGCGG 0.880952 -30 GCGTGCATGTTTGTGTGCGCTCGTCGGCGT 27 30 1 TTGTGTGCGC 0.508029 -95 CAGGGGTCTGTTGCGCGCTCCGGGGCCCGG 28 13 0 TTGCGCGCTC 0.526361 -221 ********** Masking position 3 Map Score: 33.2032 Number of sites scoring better than the average of aligned sites = 7544 Number in coding regions = 7012 Number in noncoding regions = 532 Number of orfs with sites within 600 bp upstream = 330 Fraction of orfs with sites within 600 bp upstream = 0.0530035 Motif number 7 GCCAACCCGCTGGTGCCTCCGCGTCGAGGTG 1 88 0 TGGTGCCTCG 0.510747 -190 GCAAGCTGTCTGGTGGCTAGGAGCCAAATGT 1 235 0 TGGTGGCTAG 0.92467 -43 TCCGGCGCAGTGCTTGCTGCCGATACGTCGC 3 103 0 TGCTTGCTGC 0.165046 -78 TTGTGCTGTGTGCTGGCTGTGTCGTTGTGAT 4 52 1 TGCTGGCTGG 0.889566 -230 GAGTAGCGCATCGCGGCTACCCACTGACCAC 7 232 1 TCGCGGCTAC 0.844067 -69 CAAGAAGAATTGGTGGCTGTCCTAGCGGCAA 9 104 0 TGGTGGCTGC 0.978593 -153 CCTCTGTGATCGGTGGCCGCCCGTCGTGGCG 10 125 0 CGGTGGCCGC 0.875248 -26 GGTAGGGACGCGGCGGCTGGGATCGGTGGGG 13 143 1 CGGCGGCTGG 0.916252 -158 CCCAAGTTGGTCGTGGCTGTGCGGGATTGGA 14 48 1 TCGTGGCTGG 0.981992 -253 CGCCCCGCTGTGATGGCTGAGCATGACCGAC 14 265 1 TGATGGCTGG 0.838907 -36 GGTCGCCTGGTCGTGGTTGTCGGACACTTTG 15 14 0 TCGTGGTTGC 0.560987 -287 GACCAGCCCATCGTGGCCAGGGCTAGGGACA 16 136 0 TCGTGGCCAG 0.892205 -61 CGCCCGGGTTTGGCGGCCGACGTCGGCG 18 8 0 TGGCGGCCGC 0.972349 -260 GAAGGGGCTCTCGGGGCTGTCCATCGGCGAG 18 74 1 TCGGGGCTGC 0.904587 -194 CGAGCTTGCCGGGCGGCTGGGCATGAGCAAG 18 101 1 GGGCGGCTGG 0.856039 -167 CTGGCGACCGTCGAGGCCGCCGTGAGCGTGT 18 174 1 TCGAGGCCGC 0.752061 -94 GAAGCCGAGGTCGTGGCTCCCGCGATGGCAG 18 207 1 TCGTGGCTCC 0.906901 -61 GACCGCTCGCTCGGGGCCCGGG 19 2 0 TCGGGGCCCG 0.778629 -101 TTTTCTGAGGTCGTAGCCGGGCTAGCCGCGC 21 157 1 TCGTAGCCGG 0.643287 -144 TTGTGGGGTATGGTGGCTGAGGTGTTTGGGT 21 253 1 TGGTGGCTGG 0.98603 -48 GCCGATAGGCTGGCGGCCAAGAGTCGCAGAA 24 56 1 TGGCGGCCAG 0.904239 -46 CTCGCGGCCCCGCCGGATTGCT 25 2 1 TCGCGGCCCG 0.920439 -121 CTTTCACAGTTGACGGCTGCGCACATATCCA 27 95 0 TGACGGCTGG 0.821103 -30 ********* * Masking position 7 Map Score: 29.7144 Number of sites scoring better than the average of aligned sites = 7540 Number in coding regions = 7079 Number in noncoding regions = 461 Number of orfs with sites within 600 bp upstream = 370 Fraction of orfs with sites within 600 bp upstream = 0.0594282 Motif number 8 ACACATCAAAACCGATAGCCGC 3 2 1 CCATCAAAAC 0.897306 -179 CCGACGCGGTCACATCTAAACTCGCCACGAT 3 58 1 CCATCTAAAC 0.775689 -123 CTTAGACAGGCTCATCACAACGACACAGCCA 4 65 0 CCATCACAAC 0.899027 -217 TGTGTAAATACAAACCCAGACGTGCGGGCTT 4 141 0 CAACCCAGAC 0.769009 -141 GCAACGGATTCGAAGCCCAACCACCTCAGCC 7 264 1 CAAGCCCAAC 0.900753 -37 CGATCGCCACCCAATCCAAACCGTGCCGACC 8 46 0 CAATCCAAAC 0.940222 -172 CGATCGCCACCCAATCCAAACCGTGCCGACC 8 103 0 CAATCCAAAC 0.940222 -115 CGATCGCCACCCAATCCAAACCGTGCCGACC 8 160 0 CAATCCAAAC 0.940222 -58 AAGCCGGGCGCTCACCCCACCGATCCCAGCC 13 157 0 CCACCCCACC 0.895146 -144 CTCCGACCAGCTCAGCACAACTTCACGAATC 20 182 0 CCAGCACAAC 0.834488 -28 CCAAATCCATCTCACCCAAACACCTCAGCCA 21 266 0 CCACCCAAAC 0.981522 -35 CGCCGACGAGCGCACACAAACATGCACGCTT 27 28 0 CCACACAAAC 0.792154 -97 CCCGGCGTACCGCACGCCAACCGAGCAGCTT 28 111 0 CCACGCCAAC 0.851985 -123 * ********* Masking position 4 Map Score: 9.59419 Number of sites scoring better than the average of aligned sites = 469 Number in coding regions = 417 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 9 TGCGTGGTGCGCCACCTCGACGCGGAGGCACC 1 76 1 GCCACTCGCG 0.923861 -202 GCCCGCCGCGGCCAACCCGCTGGTGCCTCCGC 1 97 0 GCCAACCGTG 0.909655 -181 CGTTGCGCGCGCCAGATCGGGGAGCGCCCTCG 4 173 0 GCCAGTCGGG 0.963315 -109 GGTCTCGCTCTCAAATTCGTCGGGGTAAGAAC 7 12 0 TCAAATCGCG 0.791722 -289 GATCACCGTTGCAAAGTCGATGATTGGCGCAC 9 168 1 GCAAATCGTG 0.966923 -89 GTTGCAGTCAGCCAAATCGCCGAGTGCGCCAA 9 191 0 GCCAATCGCG 0.987168 -66 GGTTGACCTGGCATAATCGATGCTCAACGAGT 10 69 1 GCATATCGTG 0.926522 -82 CTGGTCCGGTTCCAACTCGTTGAGCATCGATT 10 83 0 TCCAATCGTG 0.92362 -68 CTCCACCGCGGCCAAGTTGGTGACCATTGCGC 14 140 0 GCCAATTGTG 0.837362 -161 CAGAGTGGTCGCCTGGTCGTGGTTGTCGGACA 15 19 0 GCCTGTCGGG 0.918879 -282 TTGATGCCTCCTAATCGATGGAAACGGATG 16 177 0 TCCTATCGTG 0.839128 -20 CAGCCGCCCGGCAAGCTCGCCGATGGACAGCC 18 88 0 GCAAGTCGCG 0.936571 -180 CATGTCGCCGGGCAAATGGGTGGCAAGTGGGG 21 122 0 GGCAATGGTG 0.600568 -179 CAGTTATGGGGCAAAGTGGGGGATTGTGGGGT 21 230 1 GCAAATGGGG 0.798077 -71 GTCTGCTCGCGCCAGGTCGGCGGCCGCGCGGC 22 63 1 GCCAGTCGCG 0.977129 -33 GACCGCAAAGCCTAATGGGTGGCCGGACGGC 23 64 0 GCCTATGGTG 0.898207 -21 GAACCAACAGGCATATTCGCTGCCAAGAGTGG 27 66 1 GCATATCGTG 0.926522 -59 ***** *** ** Masking position 9 Map Score: 21.0478 Number of sites scoring better than the average of aligned sites = 3623 Number in coding regions = 3443 Number in noncoding regions = 180 Number of orfs with sites within 600 bp upstream = 160 Fraction of orfs with sites within 600 bp upstream = 0.0256987 Motif number 10 GCGACCACCCAAGAGCGAGCCCGCCGCGGC 1 117 0 AAGAGCGAGC 0.454398 -161 TATCGCCATCCCGGGCGCCGGACCTACGTC 2 89 1 CCGGGCGCCG 0.933239 -59 AAGCACTGCGCCGGACGACGAAGTGGTCAG 3 119 1 CCGGACGACG 0.691671 -62 ACGAAGTGGTCAGGGCGCGCTAACAGCGAG 3 136 1 CAGGGCGCGC 0.984334 -45 GAGAGCTGAGCCGGGCGGGATTCACTCC 3 163 1 CCGGGCGGGA 0.756163 -18 GCCGTGTGCTCCGGATGAGCGCGACGGTAA 4 14 1 CCGGATGAGC 0.75665 -268 ACAAACCCAGACGTGCGGGCTTCAATGTTT 4 133 0 ACGTGCGGGC 0.30555 -149 CGCGCCAGATCGGGGAGCGCCCTCGTTGTG 4 168 0 CGGGGAGCGC 0.503474 -114 CCCCTGAGCTACGGGGGCGCACGACGACAC 7 180 1 ACGGGGGCGC 0.56991 -121 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 24 1 CCGGGTGCGG 0.904147 -194 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 81 1 CCGGGTGCGG 0.904147 -137 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 138 1 CCGGGTGCGG 0.904147 -80 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCA 8 195 1 CCGGGTGCGG 0.904147 -23 TGCTTCCGGCCAGGAAGCGGGCTATCCTCG 9 35 1 CAGGAAGCGG 0.197653 -222 AGCCAAATCGCCGAGTGCGCCAATCATCGA 9 184 0 CCGAGTGCGC 0.804862 -73 TGCGGACATTCCCGGCGAGCCGTCTCGCCG 10 13 0 CCCGGCGAGC 0.966549 -138 CGAGTTGGAACCGGACCAGGTTCTCGGCAC 10 96 1 CCGGACCAGG 0.275483 -55 CTCGGCACGCCACGACGGGCGGCCACCGAT 10 118 1 CACGACGGGC 0.553421 -33 ACCAGCGGTACAGGACGGGCGTCGGTTCGC 11 37 1 CAGGACGGGC 0.852476 -53 GCGTTAGGGTCCGCGCTCGCGGGAAGAAGG 11 65 1 CCGCGCTCGC 0.380198 -25 CCGCCGAACGTGCACGCACTGCG 12 4 1 CCGAACGTGC 0.326475 -80 TGAACACTCGCCGAACGTGCAACAGCTGCG 12 52 0 CCGAACGTGC 0.326475 -32 CTTTGAGAAGCCGGGCGCTCACCCCACCGA 13 165 0 CCGGGCGCTC 0.900095 -136 CCCGGCTTCTCAAAGCGAGGGGAGCCCCGG 13 180 1 CAAAGCGAGG 0.0523685 -121 GAGGTCGCTGCAGAACGGGCGTTCCCTACC 14 210 1 CAGAACGGGC 0.448505 -91 GAACGTGGTGAACGGCGGGCCGGCAATTCC 15 197 0 AACGGCGGGC 0.523651 -104 TGGATCACCGACGGGCGCGGACAAATGGCC 16 89 1 ACGGGCGCGG 0.954477 -108 GAAGTCCCCGAAGCGCGGGCCATTTGTCCG 16 106 0 AAGCGCGGGC 0.236755 -91 CCATCGTGGCCAGGGCTAGGGACAGAAGTC 16 130 0 CAGGGCTAGG 0.467278 -67 CCTACCGACAGGGCGCGCACAC 17 5 0 CAGGGCGCGC 0.984334 -18 GCCGCCAAACCCGGGCGCAGATCCTGCGCG 18 22 1 CCGGGCGCAG 0.722462 -246 GGGGCTGTCCATCGGCGAGCTTGCCGGGCG 18 86 1 ATCGGCGAGC 0.254421 -182 CCGGTCCACCCCGGGCGGCGCTGCCATCGC 18 228 0 CCGGGCGGCG 0.905677 -40 CCGGGGTGGACCGGGTGCGCGCCCTCATGC 18 244 1 CCGGGTGCGC 0.966858 -24 CCCGGGCCCCGAGCGAGCGGTCACGCAA 19 9 1 CCGAGCGAGC 0.9499 -94 CGGCGCCGGTAACGGCGCGCGCCGGTTCGT 20 16 1 AACGGCGCGC 0.696555 -194 GAGGTCGTAGCCGGGCTAGCCGCGCGCTTC 21 163 1 CCGGGCTAGC 0.863549 -138 ACAGAATCGCACGGGCGAGGGGCGCCGGAT 22 33 0 ACGGGCGAGG 0.924675 -63 TAATGGGTGGCCGGACGGCCGACGCCGGCT 23 53 0 CCGGACGGCC 0.783719 -32 GGGTCGGTAGCGCGGCGAGCAATCCGGCGG 25 20 0 CGCGGCGAGC 0.759497 -103 GCACCCGCTCCCCGGCGAGCGGCTCAGTTA 26 33 1 CCCGGCGAGC 0.966549 -32 ACTGGGCGAGCTTAACTGAGC 26 54 0 CTGGGCGAGC 0.90352 -11 TTCCGGGCCCCGGAGCGCGCAACAGACCCC 28 11 1 CGGAGCGCGC 0.789166 -223 CGAGCAGCTTACCGACGAGCATCCACGCAG 28 91 0 ACCGACGAGC 0.484658 -143 CCGGGGTGCCCCGGGCGCCGGTCAGGCGTG 28 183 0 CCGGGCGCCG 0.933239 -51 CAACCGAATACCGGGCGATCGAGAACCGGC 29 45 0 CCGGGCGATC 0.833204 -69 GCTGGGCGACGGTATGCAGCG 29 103 0 CTGGGCGACG 0.448732 -11 ********** Masking position 7 Map Score: 74.5627 Number of sites scoring better than the average of aligned sites = 14284 Number in coding regions = 13104 Number in noncoding regions = 1180 Number of orfs with sites within 600 bp upstream = 747 Fraction of orfs with sites within 600 bp upstream = 0.119981 Motif number 11 CAAGCTGTCTGGTGGCTAGGAGCCAAATGT 1 235 0 GGTGGCTAGG 0.855647 -43 CGGACGACGAAGTGGTCAGGGCGCGCTAAC 3 130 1 AGTGGTCAGG 0.818362 -51 TGCGATACTGGGTGGATCGGAGTCGTCAGG 5 65 1 GGTGGATCGG 0.894916 -31 AATCCGTTGCGGTGGTCAGTGGGTAGCCGC 7 244 0 GGTGGTCAGT 0.906312 -57 TATGGGCTGAGGTGGTTGGGCTTCGAATCC 7 269 0 GGTGGTTGGG 0.982407 -32 CACGCATCTCGGTGTTTGGGGTGATAGCGG 10 41 1 GGTGTTTGGG 0.885828 -110 GCGACCTCCTGGTTGTCGGGGGCGACCAGG 14 188 0 GGTTGTCGGG 0.975485 -113 GCCTGGTCGTGGTTGTCGGACACTTTGGCG 15 11 0 GGTTGTCGGA 0.776609 -290 CGCCGCCCGGGGTGGACCGGGTGCGCGCCC 18 238 1 GGTGGACCGG 0.949532 -30 TGGTGGCTGAGGTGTTTGGGTGAGATGGAT 21 263 1 GGTGTTTGGG 0.885828 -38 AGAAAATCTAGGTTGTCAGGAGCCCGCGC 24 83 1 GGTTGTCAGG 0.952948 -19 AACTGTGAAAGGTTGTCCGT 27 115 1 GGTTGTCCGT 0.790265 -10 ********** Masking position 3 Map Score: 10.9754 Number of sites scoring better than the average of aligned sites = 2116 Number in coding regions = 1962 Number in noncoding regions = 154 Number of orfs with sites within 600 bp upstream = 142 Fraction of orfs with sites within 600 bp upstream = 0.0228076 Motif number 12 GGAACACTCTGCGTGGTGCGCCACCTCGAC 1 67 1 GCGTGGTGCG 0.971948 -211 GAGCGGGAATGCGTGTTGGACAGCCGAATC 1 169 1 GCGTGTTGGA 0.82922 -109 GCGTGTTGCATCCCGCCCAA 2 1 1 GCGTGTTGCA 0.814092 -147 GTCGGCCTGTGCGTGATGGCCGGTATGTTG 5 18 0 GCGTGATGGC 0.613726 -78 GGCGCCACCCGCGAGGGCGGCCGCATAGTT 7 52 0 GCGAGGGCGG 0.906551 -249 TTGTAGCCATGCGTGAGGCTAGATCAACCC 7 92 1 GCGTGAGGCT 0.732723 -209 ATTGGAGGTGGCGTGGGGGTCGCGTCGTAT 14 73 1 GCGTGGGGGT 0.90492 -228 GTGATCGATCGCGTGGTGGAACAGAGTGGT 15 42 0 GCGTGGTGGA 0.949315 -259 GGTCACGGTTGGGTGATCGATCGCGTGGTG 15 54 0 GGGTGATCGA 0.458006 -247 AGTCCCCGAAGCGCGGGCCATTTGTCCGCG 16 104 0 GCGCGGGCCA 0.781912 -93 AGCAAGTCGGGCCTGTTCCGGCATTTCGGC 18 126 1 GCCTGTTCCG 0.559247 -142 GCCGCCGTGAGCGTGTTCGAAGCCGAGGTC 18 189 1 GCGTGTTCGA 0.843354 -79 GCGCCGCCCGGGGTGGACCGGGTGCGCGCC 18 237 1 GGGTGGACCG 0.660966 -31 ACGATGGTCCGCCTGGGGCGTGCTGTCAAT 19 45 0 GCCTGGGGCG 0.876515 -58 AATCGCACGGGCGAGGGGCGCCGGATGCGA 22 29 0 GCGAGGGGCG 0.887527 -67 TCGGCAGCCGGCGTCGGCCGTCCGGCCACC 23 48 1 GCGTCGGCCG 0.801632 -37 TACCATCGGCGCGTGAGCGATTCCCGCAGC 25 77 0 GCGTGAGCGA 0.91428 -46 AAACATCGCGGCGTGGACGG 25 113 1 GCGTGGACGG 0.94432 -10 CGCCGGTCAGGCGTGAACGGCGGGTTGGTC 28 168 0 GCGTGAACGG 0.844216 -66 ********** Masking position 1 Map Score: 14.953 Number of sites scoring better than the average of aligned sites = 4531 Number in coding regions = 4138 Number in noncoding regions = 393 Number of orfs with sites within 600 bp upstream = 346 Fraction of orfs with sites within 600 bp upstream = 0.0555734 Motif number 13 GCGGCCAACCCGCTGGTGCCTCCGCGTCGAGGTG 1 88 0 CCTGGGCCCG 0.70709 -190 CTCGCTCTTGGGTGGTCGCCAGTGATTGTGACCA 1 128 1 GTGGTGCGTG 0.109078 -150 GCCCGAAAACGGCAGAGGTCCCTG 1 264 1 GCAGAGCCTG 0.893811 -14 GGCGATAGCAGGTGGGCGACTCCGATGAGCTGGC 2 62 0 GTGGGGCCCG 0.966284 -86 GCGACGTATCGGCAGCAAGCACTGCGCCGGACGA 3 103 1 GCAGCACCTG 0.419445 -78 TTCAATGTTTGCAGCGAGGCCGCGGCTCGTCAAA 4 109 0 GAGCGGCGCG 0.53153 -173 GAAACGTTCCTCCTGACGACTCCGATCCACCCAG 5 72 0 TCTGAGCCCG 0.184425 -24 CGGCCGCCCTCGCGGGTGGCGCCGATCACATTGT 7 59 1 CCGGGGCCCG 0.96781 -242 GCAACGTGTCGTCGTGCGCCCCCGTAGCTCAGGG 7 181 0 GCGTGGCCCG 0.895093 -120 GACACGTTGCGCCATGGGGCCCCGCCAGAGTAGC 7 205 1 GCATGGCCCG 0.790722 -96 GCCGACCCGCCGCACCCGGCTCCGCCGCGCTTGC 8 19 0 CCACCGCCCG 0.828759 -199 GCCGACCCGCCGCACCCGGCTCCGCCGCGCTTGC 8 76 0 CCACCGCCCG 0.828759 -142 GCCGACCCGCCGCACCCGGCTCCGCCGCGCTTGC 8 133 0 CCACCGCCCG 0.828759 -85 GCCGACCCGCCGCACCCGGCTCCGCCGCGCTTGC 8 190 0 CCACCGCCCG 0.828759 -28 TGCTGCGATTGCTGGACGGCTCCGAGGATAGCCC 9 53 0 GTGGAGCCCG 0.926355 -204 ATTCGCCGCTGATGGCGATCACCGTTGCAAAGTC 9 152 1 GTGGCACCCG 0.51915 -105 AGCGGTACAGGACGGGCGTCGGTTCGCGTTAGGG 11 40 1 GCGGGGCGTT 0.359428 -50 TCACAACGGTGTCACAAGCCAGCGCAATGTCCGC 13 109 1 GCACAGCGCG 0.824634 -192 TTCTCAAAGCGAGGGGAGCCCCGGGACTCTTACC 13 186 1 GGGGGGCCGG 0.655014 -115 GGCCGAAGGCGGCGGGTGTCACTGATCTAGGCTG 13 220 1 GCGGGGCCTG 0.977425 -81 CCACAGGTCAGACAGCTGTCGCTGAGAGCC 14 7 0 GCAGCGCCTG 0.931505 -294 AAAATGTGAGGCTAGACTCCACCGCGGCCAAGTT 14 154 0 GTAGATCCCG 0.104836 -147 AGCCATCACAGCGGGGCGCCGCTGTCGCTTCATA 14 249 0 GGGGGGCCTG 0.758243 -52 GTACCTGCCTGGCACCGGTCTCGGGCGTTTGAAC 15 223 0 GCACCGCCGG 0.765441 -78 CAGGGCTAGGGACAGAAGTCCCCGAAGCGCGGGC 16 116 0 GCAGAGCCCG 0.970594 -81 CGGGTTTGGCGGCCGACGTCGGCG 18 1 0 GCCGAGCGCG 0.836101 -267 CAAGCTCGCCGATGGACAGCCCCGAGAGCCCCTT 18 75 0 GTGGAACCCG 0.400558 -193 CGGCGAGCTTGCCGGGCGGCTGGGCATGAGCAAG 18 98 1 GCGGGGCGGG 0.900817 -170 CTCGACGGTCGCCAGCTGCAGCTGCTCCTTGGCG 18 155 0 GCAGCGACTG 0.209559 -113 CCCGGTCCACCCCGGGCGGCGCTGCCATCGCGGG 18 225 0 CCGGGGCCTG 0.889827 -43 CGTGCTTAATGAAAGCCGCCGCCG 19 89 1 GAAGCGCCCG 0.714433 -14 CGCGCGCCGTTACCGGCGCCGCCGCC 20 3 0 TCCGGGCCCG 0.603303 -207 TGCCGACGGTGTCGCAGGTCTGGGATTCGTGAAG 20 159 1 GCGCAGCGGG 0.620692 -51 CCGGGTCGTCACCGGCTGTCGGCGATATTGAGTC 21 58 1 ACGGCGCGCG 0.662145 -243 ACCTCAGAAAACCGCATGTCGCCGGGCAAATGGG 21 134 0 ACGCAGCCCG 0.573297 -167 AGGGGCGCCGGATGCGAGTCTGTGTCTGCTCGCC 22 12 0 GTGCGGCGTG 0.509946 -84 GAATCGCACGGGCGAGGGGCGCCGGATGCGAGTC 22 26 0 GCGAGGCCCG 0.828727 -70 GCTCGCGCCAGGTCGGCGGCCGCGCGGCAAGATG 22 67 1 GTCGGGCGCG 0.669768 -29 TGGGTGGCCGGACGGCCGACGCCGGCTGCCGAAA 23 46 0 GCGGCGCCCG 0.991756 -39 AATCTAGGTTGTCAGGAGCCCGCGC 24 87 1 GCAGGGCGCG 0.964264 -15 CCCGCCCCGCGACCGACGGCTCCACGAGGAGCTG 25 47 1 GCCGAGCCCA 0.231971 -76 GCGAGAATCCGCCGCAAGTCGCTTGTGGACAACC 29 70 0 GCGCAGCCTT 0.214212 -44 * **** * * *** Masking position 10 Map Score: 55.9242 Number of sites scoring better than the average of aligned sites = 25208 Number in coding regions = 23778 Number in noncoding regions = 1430 Number of orfs with sites within 600 bp upstream = 797 Fraction of orfs with sites within 600 bp upstream = 0.128012 Motif number 14 GATAGCCGCTTGTCTTCGCGTGTCTTCGGG 3 24 1 TGTCTTCGCG 0.950256 -157 TGTCTTCGCGTGTCTTCGGGGAATCCGACG 3 34 1 TGTCTTCGGG 0.867832 -147 CTGACCACTTCGTCGTCCGGCGCAGTGCTT 3 119 0 CGTCGTCCGG 0.763279 -62 GTGCTGGCTGTGTCGTTGTGATGAGCCTGT 4 61 1 TGTCGTTGTG 0.516312 -221 CAACCGAGCTTGTCGGCCTGTGCGTGATGG 5 29 0 TGTCGGCCTG 0.936274 -67 GCCGCATAGTTGGCTTCGTGGTCTCGCTCT 7 33 0 TGGCTTCGTG 0.782584 -268 TGGCGCAACGTGTCGTCGTGCGCCCCCGTA 7 189 0 TGTCGTCGTG 0.92428 -112 CCGCCCGTCGTGGCGTGCCGAGAACCTGGT 10 110 0 TGGCGTGCCG 0.828743 -41 CTGTGATCGGTGGCCGCCCGTCGTGGCGTG 10 123 0 TGGCCGCCCG 0.791217 -28 CTGGCTTACCGACGCCCGAAC 11 2 1 TGGCTTACCG 0.425737 -88 AAGTTGGTCGTGGCTGTGCGGGATTGGAGG 14 51 1 TGGCTGTGCG 0.561368 -250 GGATTGGAGGTGGCGTGGGGGTCGCGTCGT 14 71 1 TGGCGTGGGG 0.600046 -230 TGTCTTCCCGCCTCTGTCGG 14 291 0 TGTCTTCCCG 0.954917 -10 GTCTCGGAATTGCCGGCCCGCCGTTCACCA 15 192 1 TGCCGGCCCG 0.881876 -109 GAAAACCGCATGTCGCCGGGCAAATGGGTG 21 132 0 TGTCGCCGGG 0.712532 -169 TGCGAGTCTGTGTCTGCTCGCCG 22 4 0 TGTCTGCTCG 0.7616 -92 TGCGATTCTGTGTCTGCTCGCGCCAGGTCG 22 52 1 TGTCTGCTCG 0.7616 -44 GCCGCCAGCCTATCGGCCCGCGAACGACGC 24 43 0 TATCGGCCCG 0.686363 -59 TGTGTGCGCTCGTCGGCGTGTCGGTGAACC 27 41 1 CGTCGGCGTG 0.7103 -84 CAGACCCCTGTGTGGTCCCGACGGGGGAGA 28 33 1 TGTGGTCCCG 0.852625 -201 AAAATGACTGTGTGGTCCCGACGGCTCTCC 28 58 0 TGTGGTCCCG 0.852625 -176 ********** Masking position 10 Map Score: 13.8801 Number of sites scoring better than the average of aligned sites = 7072 Number in coding regions = 6459 Number in noncoding regions = 613 Number of orfs with sites within 600 bp upstream = 471 Fraction of orfs with sites within 600 bp upstream = 0.0756505 Motif number 15 CAGTGATTGTGACCAGCTGCCGGAGCGGGAA 1 147 1 GACCAGCTCC 0.951505 -131 CCGGGCGCCGGACCTACGTCCGCTGCACCCG 2 99 1 GACCTACGCC 0.976822 -49 GCAGGATTCGAACCTGCGGCCTTCTGCTCCG 7 133 1 AACCTGCGCC 0.958874 -168 CCCTAACGCGAACCGACGCCCGTCCTGTACC 11 43 0 AACCGACGCC 0.915087 -47 GTCAACCTTCTTCCCGCGAGCGCG 11 76 0 AACCTTCTCC 0.743193 -14 GTTCCTTTTCGACCATCGGCTCAATTGTCAG 13 24 1 GACCATCGCT 0.846689 -277 CCGTGCAGCAGACCTACTCCCTGATCAACCC 15 82 1 GACCTACTCC 0.908678 -219 GCGGATCAAGGTCCATCGCCCCGGGGCCGAT 15 116 0 GTCCATCGCC 0.883499 -185 TCCACTTGGGGACCATTGACCCTGTTGTCTG 16 62 0 GACCATTGCC 0.712011 -135 CGGCGCGCAGGATCTGCGCCCGGGTTTGGCG 18 24 0 GATCTGCGCC 0.848222 -244 TCTCGGGGCTGTCCATCGGCGAGCTTGCCGG 18 82 1 GTCCATCGCG 0.446453 -186 ACGAATCCCAGACCTGCGACACCGTCGGCAG 20 158 0 GACCTGCGCA 0.876342 -52 CCCGCCCCGCGACCGACGGCTCCACGAGGAG 25 47 1 GACCGACGCT 0.849189 -76 GTTCACGCCTGACCGGCGCCCGGGGCACCCC 28 180 1 GACCGGCGCC 0.990729 -54 GGCGATCGAGAACCGGCTACCGTTCCGGTGA 29 31 0 AACCGGCTCC 0.856391 -83 ******** ** Masking position 4 Map Score: 13.708 Number of sites scoring better than the average of aligned sites = 3537 Number in coding regions = 3301 Number in noncoding regions = 236 Number of orfs with sites within 600 bp upstream = 203 Fraction of orfs with sites within 600 bp upstream = 0.0326052