AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00052_mtub_reg_100.orf -o00052_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 gca 281 gca #2 gmhA 73 gmhA #3 Rv0114 31 hypothetical protein Rv0114 #4 Rv0126 108 hypothetical protein Rv0126 #5 galE1 300 galE1 #6 galT' 128 galT' #7 galU 100 galU #8 hspX 196 hspX #9 pfkA 95 pfkA #10 gatC 84 gatC #11 pgmA 69 pgmA #12 mhpE 60 mhpE #13 rmlB2 22 rmlB2 Motif number 1 CGTGTGCTCCGGATGAGCGCGACGGTAACC 1 16 1 GGATGAGCGC 0.806488 -266 AACCGTTTGACGAGCCGCGGCCTCGCTGCA 1 104 1 CGAGCCGCGG 0.976862 -178 CGCGCCAGATCGGGGAGCGCCCTCGTTGTG 1 168 0 CGGGGAGCGC 0.992649 -114 CTCCCCGATCTGGCGCGCGCAACGAGGTGC 1 181 1 TGGCGCGCGC 0.844456 -101 GCGCGCGCAACGAGGTGCGCACTATCCATT 1 193 1 CGAGGTGCGC 0.960173 -89 CAAACCGCACCGGCCTGAGCATCAAGGAGT 1 236 0 CGGCCTGAGC 0.884327 -46 TCCAATTGGCCGGCCGGCGGGTGGTATCCG 4 19 0 CGGCCGGCGG 0.503476 -90 AATTGGATTGGCGCCAGCCGTGATTGCCGC 4 42 1 GCGCCAGCCG 0.558248 -67 GCCGTGATTGCCGCGTGAGCCCCCGAGTTC 4 58 1 CCGCGTGAGC 0.752447 -51 TTCCACGATGCCACGCGCACGGGAGACGGA 4 86 0 CCACGCGCAC 0.728618 -23 CGGACTCCGGCCGCGTGCGGC 5 2 0 CCGCGTGCGG 0.517995 -299 CGGCCGGAGTCCGCCTGACCGATCTGGCAA 5 19 1 CCGCCTGACC 0.718411 -282 GAACACCAAACCGGCAGCGCCCGAGCATTG 5 46 0 CCGGCAGCGC 0.99165 -255 GGTGTTCCGTGCGACCGCCCGGGTAGAGTG 5 69 1 GCGACCGCCC 0.732436 -232 TCAAGAAGCGGCGCAAGCGCATGTCCAAGA 5 145 1 GCGCAAGCGC 0.71288 -156 GTCGCACCCGGGTGCAGCGCAGGAAACTGG 5 196 1 GGTGCAGCGC 0.806238 -105 AAATAGGTTGCGAGCAGACCCCGCCAGCTC 5 228 1 CGAGCAGACC 0.835664 -73 GCGTGACGGTCGAGCTGGCGGGGTCTGCTC 5 239 0 CGAGCTGGCG 0.673536 -62 CCAGCTCGACCGTCACGCGCTTGTAACGCC 5 251 1 CGTCACGCGC 0.498853 -50 GACAGCCTAACGGCCAGGCGAAACGGCGGC 5 278 0 CGGCCAGGCG 0.942862 -23 GCATCGTCTCCCGGCGGCGCGGCGAGCCGC 6 14 1 CCGGCGGCGC 0.902613 -115 GGCGGCGCGGCGAGCCGCCCCAAAACCAAC 6 26 1 CGAGCCGCCC 0.984019 -103 GTGGTGTCGCCGGTGAGGGCCGCGACGCCA 6 88 0 CGGTGAGGGC 0.879162 -41 CGGATCGGCCCGAGATCCTCT 6 118 0 GGATCGGCCC 0.802293 -11 TCGCGCGGGACGGCCGGGGCTGTGTCATCG 7 19 0 CGGCCGGGGC 0.898105 -82 CGGCCGTCCCGCGCGAGCGCCGGGACAGCG 7 33 1 GCGCGAGCGC 0.719572 -68 CGCGAGCGCCGGGACAGCGCCAACGAAGAG 7 44 1 GGGACAGCGC 0.95501 -57 ACAGCGCCAACGAAGAGGCGGGCAATCAGC 7 57 1 CGAAGAGGCG 0.436797 -44 GGGGTGATATCGAACAGCGGAGGTTGATC 8 10 0 CGAACAGCGG 0.906763 -187 CTGTTGTCTGCCAACCGCCGTTCAGAAAGA 8 42 0 CCAACCGCCG 0.794963 -155 AGTGGATCACCGACGGGCGCGGACAAATGG 8 87 1 CGACGGGCGC 0.900116 -110 CGCGGACAAATGGCCCGCGCTTCGGGGACT 8 104 1 TGGCCCGCGC 0.871383 -93 CAGCCCATCGTGGCCAGGGCTAGGGACAGA 8 134 0 TGGCCAGGGC 0.887266 -63 GCCTTTGATCCGACCAGCCCATCGTGGCCA 8 148 0 CGACCAGCCC 0.985472 -49 CGGCGAGCAGACACAGACTC 9 1 1 CGGCGAGCAG 0.812539 -95 ATCGCACGGGCGAGGGGCGCCGGATGCGAG 9 28 0 CGAGGGGCGC 0.981661 -68 GCCGCCGACCTGGCGCGAGCAGACACAGAA 9 57 0 TGGCGCGAGC 0.722472 -39 CGCCAGGTCGGCGGCCGCGCGGCAAGATGA 9 72 1 GCGGCCGCGC 0.859117 -24 ACGGCCGACGCCGGCTGCCGAAACGCCGTG 10 39 0 CCGGCTGCCG 0.895776 -46 AATGGGTGGCCGGACGGCCGACGCCGGCTG 10 52 0 CGGACGGCCG 0.749239 -33 CCAATTCTGCCCACAGGCCCTACAGTGCGA 11 45 0 CCACAGGCCC 0.692106 -25 GACACCAGCCGCGCGTCCAAGAAT 12 5 1 CCAGCCGCGC 0.982922 -56 GATCCGGCAAGGGTGCGGGCTGACACTG 12 43 1 GGGTGCGGGC 0.749045 -18 GCCCACCATACCGGCGGCCC 13 1 0 CCGGCGGCCC 0.846886 -22 GCCGCCGGTATGGTGGGCCG 13 13 1 TGGTGGGCCG 0.470992 -10 ********** Masking position 7 Map Score: 82.147 Number of sites scoring better than the average of aligned sites = 69188 Number in coding regions = 64694 Number in noncoding regions = 4494 Number of orfs with sites within 600 bp upstream = 1462 Fraction of orfs with sites within 600 bp upstream = 0.234822 Motif number 2 GCTCATCCGGAGCACACGGCGGA 1 3 0 AGCACACGCG 0.886542 -279 CGACACAGCCAGCACACAGCACAATTCCAGG 1 45 0 AGCACACGCA 0.715932 -237 GCTCATCACAACGACACAGCCAGCACACAGC 1 56 0 ACGACACGCC 0.963504 -226 ACGAGCCGCGGCCTCGCTGCAAACATTGAAG 1 113 1 GCCTCGCGCA 0.890184 -169 TTCTCGACAAACCGCACCGGCCTGAGCATCA 1 242 0 ACCGCACGGC 0.977114 -40 GATACCACCCGCCGGCCGGCCAATTGGATTG 4 21 1 GCCGGCCGCC 0.884194 -88 GCCGCACGCGGCCGGAGTCCGCC 5 3 1 CGCACGCGCC 0.811885 -298 CGCACGGAACACCAAACCGGCAGCGCCCGAG 5 51 0 ACCAAACGGC 0.875098 -250 TACTGAACCCATGACCCCGCCATCTATACGG 5 113 0 ATGACCCGCC 0.720641 -188 GCACCCGGGTGCGACGCAGCAGCTTGCGATG 5 180 0 GCGACGCGCA 0.925271 -121 GCGCGTGACGGTCGAGCTGGCGGGGTCTGCT 5 240 0 GTCGAGCGGC 0.855428 -61 TAACGGCCAGGCGAAACGGCGGCGTTACAAG 5 270 0 GCGAAACGCG 0.86304 -31 TCCGACAGCCTAACGGCCAGGCGAAACG 5 283 0 GCCTAACGCC 0.906278 -18 GGGGCGGCTCGCCGCGCCGCCGGGAGACGAT 6 16 0 GCCGCGCGCC 0.991363 -113 CAACGATTGGGCCACGATGCGTAGGCATAGC 6 52 1 GCCACGAGCG 0.93064 -77 AGCTGAGGTGGCGTCGCGGCCCTCACCGGCG 6 80 1 GCGTCGCGCC 0.954139 -49 GTCCTCAACGATGACACAGCCCCGGCCGTCC 7 11 1 ATGACACGCC 0.802164 -90 CACAGCCCCGGCCGTCCCGCGCGAGCGCCGG 7 25 1 GCCGTCCGCG 0.863665 -76 GACAGCGCCAACGAAGAGGCGGGCAATCAGC 7 56 1 ACGAAGAGCG 0.375326 -45 GCGGGCAATCAGCACGCTGCGGGTTATCGTG 7 74 1 AGCACGCGCG 0.926647 -27 TCGGGGTGATATCGAACAGCGGAGGTTGATC 8 11 0 ATCGAACGCG 0.677839 -186 CCTAGCCCTGGCCACGATGGGCTGGTCGGAT 8 140 1 GCCACGAGGG 0.825151 -57 GCACGGGCGAGGGGCGCCGGATGCGAGTCTG 9 24 0 GGGGCGCGGA 0.634072 -72 CAGACACAGAATCGCACGGGCGAGGGGCGCC 9 37 0 ATCGCACGGC 0.867726 -59 CCGCGCGGCCGCCGACCTGGCGCGAGCAGAC 9 63 0 GCCGACCGGC 0.903225 -33 CCCTCATCTTGCCGCGCGGCCGCCGACCTGG 9 74 0 GCCGCGCGCC 0.997495 -22 GACGCCGGCTGCCGAAACGCCGTGGATACAT 10 32 0 GCCGAAAGCC 0.893324 -53 GCCGGCGTCGGCCGTCCGGCCACCCATTAGG 10 54 1 GCCGTCCGCC 0.941425 -31 GACCGCAAAGCCTAATGGGTGG 10 73 0 ACCGCAAGCC 0.937611 -12 GACACCAGCCGCGCGTCCAAGAATTCAT 12 8 1 GCCGCGCTCC 0.916377 -53 CGGCCCACCATACCGGCGGCCC 13 6 0 ACCATACGGC 0.736094 -17 ******* *** Masking position 9 Map Score: 48.841 Number of sites scoring better than the average of aligned sites = 45514 Number in coding regions = 42533 Number in noncoding regions = 2981 Number of orfs with sites within 600 bp upstream = 1247 Fraction of orfs with sites within 600 bp upstream = 0.200289 Motif number 3 TCCGCCGTGTGCTCCGGATGAGCGC 1 3 1 CGCGTGCTCC 0.882771 -279 GCGCGCGCAACGAGGTGCGCACTATCCATTCGA 1 193 1 CGGGCGCACT 0.579621 -89 ACTATCCATTCGAGGTGAACTGGACTCCTTGAT 1 213 1 CGGGAACTGG 0.957135 -69 TTTCGTCGCGGATACCACCCGCCGGCCGG 4 7 1 CGGGACCACC 0.87012 -102 CGGGGGCTCACGCGGCAATCACGGCTGGCGCCA 4 50 0 CGGGATCACG 0.836504 -59 CTCCCGTGCGCGTGGCATCGTGGAAGCA 4 91 1 CGGGTCGTGG 0.615117 -18 AATCAAGAAGCGGCGCAAGCGCATGTCCAAGAA 5 143 1 CGCGAGCGCA 0.892244 -158 CAAGCTGCTGCGTCGCACCCGGGTGCAGCGCAG 5 185 1 CGCGCCCGGG 0.932349 -116 CCGGGTGCAGCGCAGGAAACTGGGCAAATAGGT 5 203 1 CGAGAACTGG 0.627011 -98 GTCGAGCTGGCGGGGTCTGCTCGCAACCTATTT 5 228 0 CGGGTGCTCG 0.782918 -73 GGCGAAACGGCGGCGTTACAAGCGCGTGACGGT 5 259 0 CGCGACAAGC 0.824256 -42 CTCCCGGCGGCGCGGCGAGCCGCCCCAAAACCA 6 21 1 CGGGAGCCGC 0.926579 -108 GCCTACGCATCGTGGCCCAATCGTTGGTTTTGG 6 45 0 CGGGCAATCG 0.848534 -84 GTGAGGGCCGCGACGCCACCTCAGCTATGCCTA 6 73 0 CGCGACCTCA 0.93361 -56 CGGCCCTCACCGGCGACACCACAGAGGATCTCG 6 96 1 CGCGACCACA 0.873667 -33 GTCCTCAACGATGACACAGCCCCGGCCGTCC 7 9 1 CGTGACAGCC 0.431784 -92 CCCGCGCGAGCGCCGGGACAGCGCCAACGAAGA 7 40 1 CGCGACAGCG 0.827435 -61 TCAGAAAGATCGGGGTGATATCGAACAGCGGAG 8 18 0 CGGGATATCG 0.857916 -179 CACCGACGGGCGCGGACAAATGGCCCGCGCTTC 8 94 1 CGGGAAATGG 0.90831 -103 ATCGCACGGGCGAGGGGCGCCGGATGCGAGTCT 9 25 0 CGGGCGCCGG 0.913949 -71 TCGGCGGCCGCGCGGCAAGATGAGGGT 9 79 1 CGGGAGATGA 0.869454 -17 GCCGAAACGCCGTGGATACATCGTTGTGCCACA 10 20 0 CGGGACATCG 0.693661 -65 GCCGGACGGCCGACGCCGGCTGCCGAAACGCCG 10 41 0 CGCGGGCTGC 0.773951 -44 ** ** ****** Masking position 5 Map Score: 24.4338 Number of sites scoring better than the average of aligned sites = 19539 Number in coding regions = 18251 Number in noncoding regions = 1288 Number of orfs with sites within 600 bp upstream = 820 Fraction of orfs with sites within 600 bp upstream = 0.131706 Motif number 4 GGCCTCGCTGCAAACATTGAAGCCCGCACGTCTGG 1 122 1 CAACATGACC 0.894757 -160 TGTGTAAATACAAACCCAGACGTGCGGGCTTCAAT 1 137 0 CAACCCGATC 0.9036 -145 ATGGATAGTGCGCACCTCGTTGCGCGCGCCAGATC 1 187 0 CCACCTGTCC 0.735542 -95 ATAAGATTGACCGTAACGGACTCTCAGTATCGACA 2 45 1 CGTAACGACC 0.948655 -29 GCACGGAACACCAAACCGGCAGCGCCCGAGCATTG 5 46 0 CAAACCGCCC 0.938728 -255 ATACGGCTATCTGACCCGGACACTCTACCCGGGCG 5 84 0 CGACCCGACC 0.997426 -217 TTCTTGATTACTGAACCCATGACCCCGCCATCTAT 5 117 0 CGAACCATCC 0.684902 -184 CGGATCGGCCCGAGATCCTCTGTGGTGTCG 6 109 0 CGCCCGGACC 0.945558 -20 TTGTCCGCGCCCGTCGGTGATCCACTTGGGGACCA 8 78 0 CGTCGGGACC 0.84853 -119 CTAGGGACAGAAGTCCCCGAAGCGCGGGCCATTTG 8 110 0 AGTCCCGACC 0.916108 -87 CGGCGAGCAGACACAGACTCGCATCCGGCGCC 9 8 1 CGACACGACC 0.993536 -88 CTGGCGCGAGCAGACACAGAATCGCACGGGCGAGG 9 43 0 CGACACGACC 0.993536 -53 GGCCAACACTGTGGCACAACGATGTAT 10 3 1 CAACACGTCC 0.955926 -82 CGGCCCACCATACCGGCGGCCC 13 1 0 CATACCGCCC 0.876427 -22 * ***** ** * * Masking position 15 Map Score: 13.6462 Number of sites scoring better than the average of aligned sites = 4461 Number in coding regions = 4068 Number in noncoding regions = 393 Number of orfs with sites within 600 bp upstream = 274 Fraction of orfs with sites within 600 bp upstream = 0.044009 Motif number 5 CCAGTTCACCTCGAATGGATAGTGCGCACCTC 1 204 0 TCAATGATAG 0.794988 -78 CGCCGGCCGGCCAATTGGATTGGCGCCAGCCG 4 30 1 CCATTGATTG 0.916449 -79 GGTCAGATAGCCGTATAGATGGCGGGGTCATG 5 103 1 CCTATGATGG 0.957367 -198 AGGAAACTGGGCAAATAGGTTGCGAGCAGACC 5 216 1 GCAATGGTTG 0.874034 -85 CGCATCGTGGCCCAATCGTTGGTTTTGGGGCG 6 41 0 CCAATGTTGG 0.985489 -88 TGATTGCCCGCCTCTTCGTTGGCGCTGTCCCG 7 53 0 CCCTTGTTGG 0.851204 -48 TTGATGCCTCCTAATCGATGGAAACGGATGC 8 176 0 CCAATGATGG 0.992194 -21 GACCGCAAAGCCTAATGGGTGGCCGGACGGCC 10 63 0 CCAATGGTGG 0.993519 -22 GGCCTGTGGGCAGAATTGGTAGCC 11 56 1 CAAATGGTAG 0.804343 -14 ** *** ***** Masking position 6 Map Score: 5.10204 Number of sites scoring better than the average of aligned sites = 496 Number in coding regions = 460 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 6 GAGCATCAAGGAGTCCAGTTCACCTCGAATG 1 219 0 GGTCCAGTTC 0.822126 -63 TCGATACTGAGAGTCCGTTACGGTCAATCTT 2 47 0 GGTCCGTTAC 0.966286 -27 CCGGCGGGTGGTATCCGCGACGAAA 4 5 0 GATCCGCGAC 0.829287 -104 CCCGGGTAGAGTGTCCGGGTCAGATAGCCGT 5 86 1 GGTCCGGGTC 0.991831 -215 CGCTTGTAACGCCGCCGTTTCGCCTGGCCGT 5 268 1 GCGCCGTTTC 0.860168 -33 CGGGACGGCCGGGGCTGTGTCATCGTTGAGG 7 13 0 GGGCTGTGTC 0.9549 -88 AATGGCCCGCGCTTCGGGGACTTCTGTCCCT 8 112 1 GTTCGGGGAC 0.746382 -85 CGGATCAAAGGCATCCGTTTCCATCGATTAG 8 166 1 GATCCGTTTC 0.94569 -31 CGCCGGATGCGAGTCTGTGTCTGCTCGCCG 9 10 0 GGTCTGTGTC 0.980044 -86 TCGCCCGTGCGATTCTGTGTCTGCTCGCGCC 9 45 1 GTTCTGTGTC 0.93068 -51 * ********* Masking position 5 Map Score: 7.23103 Number of sites scoring better than the average of aligned sites = 2045 Number in coding regions = 1853 Number in noncoding regions = 192 Number of orfs with sites within 600 bp upstream = 170 Fraction of orfs with sites within 600 bp upstream = 0.0273049 Motif number 7 AGGGCGCTCCCCGATCTGGCGCGCGCAACG 1 175 1 CCGATCTGGC 0.997897 -107 GTCCGCCTGACCGATCTGGCAATGCTCGGG 5 27 1 CCGATCTGGC 0.997897 -274 CGCGTGACGGTCGAGCTGGCGGGGTCTGCT 5 240 0 TCGAGCTGGC 0.981079 -61 CGATATCACCCCGATCTTTCTGAACGGCGG 8 28 1 CCGATCTTTC 0.946419 -169 CGCGCGGCCGCCGACCTGGCGCGAGCAGAC 9 63 0 CCGACCTGGC 0.99644 -33 ********** Masking position 4 Map Score: 8.89006 Number of sites scoring better than the average of aligned sites = 409 Number in coding regions = 388 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 8 CGGATGAGCGCGACGGTAACCCTGGAATTG 1 25 1 CGACGGTAAC 0.896562 -257 CAGATAAGATTGACCGTAACGGACTCTCAG 2 42 1 TGACCGTAAC 0.536444 -32 TACCACCCGCCGGCCGGCCAATTGGATTGG 4 23 1 CGGCCGGCCA 0.561908 -86 GGGGCTCACGCGGCAATCACGGCTGGCGCC 4 51 0 CGGCAATCAC 0.729407 -58 GTGTTCCGTGCGACCGCCCGGGTAGAGTGT 5 70 1 CGACCGCCCG 0.914603 -231 CCCGCCAGCTCGACCGTCACGCGCTTGTAA 5 247 1 CGACCGTCAC 0.990546 -54 GGTGGCGTCGCGGCCCTCACCGGCGACACC 6 86 1 CGGCCCTCAC 0.979285 -43 GACACAGCCCCGGCCGTCCCGCGCGAGCGC 7 23 1 CGGCCGTCCC 0.989731 -78 GGCGCTGTCCCGGCGCTCGCGCGGGACGGC 7 35 0 CGGCGCTCGC 0.947214 -66 AGTGGATCACCGACGGGCGCGGACAAATGG 8 87 1 CGACGGGCGC 0.961061 -110 GCCTTTGATCCGACCAGCCCATCGTGGCCA 8 148 0 CGACCAGCCC 0.924334 -49 CGCGCCAGGTCGGCGGCCGCGCGGCAAGAT 9 70 1 CGGCGGCCGC 0.972885 -26 CCGACGCCGGCTGCCGAAACGCCGTGGATA 10 35 0 CTGCCGAAAC 0.278667 -50 CAGCCGGCGTCGGCCGTCCGGCCACCCATT 10 52 1 CGGCCGTCCG 0.74109 -33 ********** Masking position 4 Map Score: 17.3504 Number of sites scoring better than the average of aligned sites = 14090 Number in coding regions = 13205 Number in noncoding regions = 885 Number of orfs with sites within 600 bp upstream = 600 Fraction of orfs with sites within 600 bp upstream = 0.0963701 Motif number 9 ********** No masking Map Score: 2.65333e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 CAGCACAATTCCAGGGTTACCGTCGCGCTC 1 30 0 CCAGGGTTAC 0.934691 -252 CGCGTGAGCCCCCGAGTTCCGTCTCCCGTG 4 69 1 CCCGAGTTCC 0.968453 -40 ATGCCACGCGCACGGGAGACGGAACTCGGG 4 79 0 CACGGGAGAC 0.952999 -30 ATGGCGGGGTCATGGGTTCAGTAATCAAGA 5 121 1 CATGGGTTCA 0.688868 -180 CTGCGTCGCACCCGGGTGCAGCGCAGGAAA 5 192 1 CCCGGGTGCA 0.983072 -109 TCGCCGCGCCGCCGGGAGACGATGCACA 6 9 0 GCCGGGAGAC 0.895674 -120 CGGATCGGCCCGAGATCCTCTGTGGTGT 6 111 0 CCCGAGATCC 0.950338 -18 AAGGATCCGGCAAGGGTGCGGGCTGACACT 12 40 1 CAAGGGTGCG 0.838839 -21 ********** Masking position 6 Map Score: 1.71194 Number of sites scoring better than the average of aligned sites = 4271 Number in coding regions = 3944 Number in noncoding regions = 327 Number of orfs with sites within 600 bp upstream = 271 Fraction of orfs with sites within 600 bp upstream = 0.0435271 Motif number 11 ********** No masking Map Score: 2.65333e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 2.65333e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 2.65333e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0