AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00071_mtub_reg_300.orf -o00071_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: fadE21 25 fadE21 fadB2 81 fadB2 Rv1520 25 hypothetical protein Rv1520 Rv1871c 22 hypothetical protein Rv1871c Input sequences: #1 bioF2 300 bioF2 #2 PPE 108 PPE #3 fadD7 172 fadD7 #4 fadE1 41 fadE1 #5 Rv0132c 86 hypothetical protein Rv0132c #6 Rv0144 101 hypothetical protein Rv0144 #7 Rv0145 88 hypothetical protein Rv0145 #8 Rv0146 42 hypothetical protein Rv0146 #9 Rv0147 94 hypothetical protein Rv0147 #10 fadE2 300 fadE2 #11 fadD5 54 fadD5 #12 fadD4 113 fadD4 #13 fadE3 56 fadE3 #14 Rv0218 92 hypothetical protein Rv0218 #15 Rv0221 43 hypothetical protein Rv0221 #16 echA1 30 echA1 #17 Rv0223c 98 hypothetical protein Rv0223c #18 Rv0224c 35 hypothetical protein Rv0224c #19 fadE4 94 fadE4 #20 fadA2 141 fadA2 #21 fadD2 35 fadD2 #22 fadE6 113 fadE6 #23 Rv0273c 96 hypothetical protein Rv0273c #24 fadE7 35 fadE7 #25 fadD30 300 fadD30 #26 Rv0466 151 hypothetical protein Rv0466 #27 aceA 274 aceA #28 fadD8 77 fadD8 #29 end 194 end #30 lpqP 31 lpqP #31 fadE8 59 fadE8 #32 mmsA 205 mmsA #33 adhB 98 adhB #34 Rv0767c 201 hypothetical protein Rv0767c #35 fadA 156 fadA #36 fadE10 260 fadE10 #37 echA6 26 echA6 #38 Rv0976c 197 hypothetical protein Rv0976c #39 Rv1057 300 hypothetical protein Rv1057 #40 fadD14 106 fadD14 #41 echA9 186 echA9 #42 fadA3 52 fadA3 #43 Rv1075c 300 hypothetical protein Rv1075c #44 fadD21 176 fadD21 #45 Rv1186c_rocA 84 Rv1186c: hypothetical protein Rv1186c, rocA: rocA #46 sigI 81 sigI #47 Rv1191 72 hypothetical protein Rv1191 #48 Rv1192 81 hypothetical protein Rv1192 #49 fadD36 39 fadD36 #50 Rv1205 94 hypothetical protein Rv1205 #51 fadD6 49 fadD6 #52 fadA4 300 fadA4 #53 Rv1344 44 hypothetical protein Rv1344 #54 Rv1428c 118 hypothetical protein Rv1428c #55 Rv1517 220 hypothetical protein Rv1517 #56 Rv1519 129 hypothetical protein Rv1519 #57 fadD25 233 fadD25 #58 fadD24 51 fadD24 #59 fadD11' 176 fadD11' #60 Rv1861 300 hypothetical protein Rv1861 #61 adhA 73 adhA #62 Rv1869c 99 hypothetical protein Rv1869c #63 Rv1870c 64 hypothetical protein Rv1870c #64 lldD2 22 lldD2 #65 echA13 224 echA13 #66 fadD15 165 fadD15 #67 adhE2 300 adhE2 #68 echA14 300 echA14 #69 scoA 82 scoA #70 fadD35 115 fadD35 #71 echA15 52 echA15 #72 fadE20 135 fadE20 #73 dapF 24 dapF #74 Rv2728c 108 hypothetical protein Rv2728c #75 Rv2729c 66 hypothetical protein Rv2729c #76 ltp1 32 ltp1 #77 Rv2792c 201 hypothetical protein Rv2792c #78 Rv2795c 144 hypothetical protein Rv2795c #79 Rv2798c 130 hypothetical protein Rv2798c #80 echA16 46 echA16 #81 tesA 238 tesA #82 fadD26 286 fadD26 #83 Rv2949c 25 hypothetical protein Rv2949c #84 fadD29 300 fadD29 #85 serB2 37 serB2 #86 ctaD 214 ctaD #87 Rv3137 300 hypothetical protein Rv3137 #88 fadE24 79 fadE24 #89 fadE25 24 fadE25 #90 Rv3292 30 hypothetical protein Rv3292 #91 aldB 26 aldB #92 Rv3371 191 hypothetical protein Rv3371 #93 otsB2 41 otsB2 #94 echA18 236 echA18 #95 fadE26 214 fadE26 #96 fadE27 24 fadE27 #97 fadD17 70 fadD17 #98 fadD18 45 fadD18 #99 fadD19_echA19 73 fadD19: fadD19, echA19: echA19 #100 Rv3545c_fadA5 111 Rv3545c: hypothetical protein Rv3545c, fadA5: fadA5 #101 echA20 54 echA20 #102 fadA6 64 fadA6 #103 Rv3557c 300 hypothetical protein Rv3557c #104 fadE30_fadD3 47 fadE30: fadE30, fadD3: fadD3 #105 fadE34 271 fadE34 #106 Rv3788 243 hypothetical protein Rv3788 #107 Rv3789 108 hypothetical protein Rv3789 #108 Rv3790 39 hypothetical protein Rv3790 #109 embA 85 embA #110 atsH 67 atsH #111 fadE35 79 fadE35 #112 fadD32 288 fadD32 #113 Rv3802c 197 hypothetical protein Rv3802c #114 fbpC1 179 fbpC1 #115 fbpA 294 fbpA #116 Rv3805c 88 hypothetical protein Rv3805c #117 Rv3807c 28 hypothetical protein Rv3807c #118 glf 263 glf #119 fadD23 206 fadD23 Motif number 1 CTGGTGGGCCGGCGATAACGTC 1 3 1 GGTGGGCCGG 0.907184 -298 TTGGGTGACCGTGTTGGCGCGTTGTCGCAG 1 46 1 GTGTTGGCGC 0.513808 -255 GCGCGTTGTCGCAGTGCCGATCGGCGGCAG 1 62 1 GCAGTGCCGA 0.511539 -239 GTGCCGATCGGCGGCAGCGCTGAGTCGATT 1 75 1 GCGGCAGCGC 0.502911 -226 CGTGACTCTGTTCCCACCGCCACCTTCGGT 1 118 1 TTCCCACCGC 0.503762 -183 AGCTGGAATCTTCCGGGCGGTCGG 1 287 1 TTCCGGGCGG 0.641291 -14 CTTTCCTGGGCGCGATGGGAACT 2 4 1 TCCTGGGCGC 0.936455 -105 CCATATCGTGGCCGCCAGGACTCAC 2 94 0 TCGTGGCCGC 0.917102 -15 ACTGTTGTCCGGGGCGCCGGCCGTGTCCAA 3 18 1 GGGGCGCCGG 0.93526 -155 GGTCTATCAACCGTTAGCGGATCGGTATTG 3 76 1 CCGTTAGCGG 0.478772 -97 CGGGCTCGCCTGCCCGGCGTCCAATACCGA 3 97 0 TGCCCGGCGT 0.725229 -76 CTCACCGTCGGCGCCACCGGTTAGCCTGGC 5 14 0 GCGCCACCGG 0.499115 -73 TCGAAGGTGTGCTGCAGCGCGACGCGGGTA 5 57 1 GCTGCAGCGC 0.817328 -30 CCCAGAGTTGGCCAGCGCTATCCGACGA 6 9 1 TGGCCAGCGC 0.739246 -93 TATCCGACGATCAGCAGCGCAACCATGGCC 6 29 1 TCAGCAGCGC 0.7496 -73 ACGTACGCGATCACCGCCGCTGTGCGGCGA 6 68 1 TCACCGCCGC 0.896098 -34 GTTTCGGATCTCCTCGCCGCACAGCGGCGG 6 81 0 TCCTCGCCGC 0.960383 -21 CTACGCTTCGGGGCCGCCGGTTAGGTCTCG 7 12 0 GGGCCGCCGG 0.93551 -77 AGGGAGCACAGGATGAGCGCC 8 32 1 GGATGAGCGC 0.705002 -11 TCGCCACAGTTCGGTGCCGTAGCTGCGATA 10 45 1 TCGGTGCCGT 0.518041 -256 AGTACGAATCCCGTGACCGCAACGGCCAGT 10 77 0 CCGTGACCGC 0.84478 -224 TGACCCGCAAGTGGCAGCGCGAGCTCGACT 10 164 0 GTGGCAGCGC 0.726891 -137 GTTTTGCGTCTGCTCGCCGTCGTTTCGTGC 10 205 0 TGCTCGCCGT 0.698299 -96 AACCCCCTTCTCGTCGGCGTGTCGAGGGAC 10 232 1 TCGTCGGCGT 0.604088 -69 TATGCGTCTGCTAGCGCCGGTAGATATCGT 10 263 1 CTAGCGCCGG 0.71495 -38 GGTCCAGTATGCGTCGGCGCAATTTCGCCT 14 12 1 GCGTCGGCGC 0.888654 -81 ACCATACAATTGGCCGGCGT 15 1 0 TGGCCGGCGT 0.608742 -43 CTCGGCATCGTCGCCGGCGGTCATGGCGTC 17 53 0 TCGCCGGCGG 0.547436 -46 CCGGCGACGATGCCGAGCGCAGCGATGAGG 17 66 1 TGCCGAGCGC 0.790143 -33 GCGATGAGGAGGAGCGGCGCAT 17 87 1 GGAGCGGCGC 0.967675 -12 TCGGTGTCTTGCGGGGCCGCAGTGCAGTAG 19 32 1 GCGGGGCCGC 0.537809 -63 AAGAATTGGCTCCCGAGCGGTTCGGTCAAC 19 75 0 TCCCGAGCGG 0.796958 -20 ATCGTGTGGGGGTCGGGCGCGCCAATACAC 20 27 1 GGTCGGGCGC 0.86223 -115 CCCTATGTGAGGCGGGTCGCAAATTACC 21 9 0 GGCGGGTCGC 0.555735 -27 GTTGGCTAGCGGATGGCCGGCGAAATGGGT 22 19 0 GGATGGCCGG 0.898893 -95 GGCTCCCATTGGCTCCCCGGGACGGCGGCC 23 16 1 GGCTCCCCGG 0.660996 -81 TCAATACTGCCCCGGCCCGGTAGCCTCGCG 24 13 0 CCCGGCCCGG 0.744792 -23 CTTCAACAAGCCGCCGCGTGAGGACGAAC 25 10 1 GCCGCCGCGT 0.502202 -291 CGAATTTCCCGTCGGGCCGCTCATGTTTCC 25 217 0 GTCGGGCCGC 0.949979 -84 TCATGCCAACGCCGTGGCGGAAACACCAAT 26 71 0 GCCGTGGCGG 0.957588 -81 GTTGGCATGATTCGCACCGGGACTCAAGGG 26 91 1 TTCGCACCGG 0.552564 -61 CACCAGTGAAGCTGCGCCGTTGACACCGCC 27 198 1 GCTGCGCCGT 0.771933 -77 CGACGGTAGGGCGTCAGCGTTTTCGGCAAT 27 232 1 GCGTCAGCGT 0.578232 -43 GCAGCAAATTTCACGAGCGCTGACTACGCG 29 30 1 TCACGAGCGC 0.583415 -165 ACGTTTCCCCGGAGCAGCGCGTAGTCAGCG 29 47 0 GGAGCAGCGC 0.88252 -148 GTATTCGTGGGCCCCGGCGCATAAAGTGTT 29 91 0 GCCCCGGCGC 0.947311 -104 ACGGCAGCATCCCGTGCCGCGGCTGGCCGG 29 123 1 CCCGTGCCGC 0.947225 -72 CCCGTGCCGCGGCTGGCCGGACGTGATCCG 29 133 1 GGCTGGCCGG 0.971684 -62 ATGATGGAGCGCAGCGCCGGAACAGATGCG 32 43 1 GCAGCGCCGG 0.926892 -163 CCTGTGCAAGCCGGTGGCGGCGGGGAATCC 32 180 0 CCGGTGGCGG 0.499184 -26 ACGCCCTAGCGCCGTTGACCTA 33 3 1 GCCCTAGCGC 0.849807 -96 TGGTCCCTAGCCTCGGCCGGAACGCCGACT 33 42 0 CCTCGGCCGG 0.819914 -57 ACTGGCTTGCCTCCTGCCGCGACCATCCGA 34 170 1 CTCCTGCCGC 0.648564 -32 GCCCGGATAGGCTCGACCGCC 35 2 0 GCTCGACCGC 0.742379 -155 CGGGCGACGATGCGCGCCGCAGCGATACCT 35 27 1 TGCGCGCCGC 0.97642 -130 CCAACCAACAGGTTGGCCGGGGGCCCTGTT 35 60 1 GGTTGGCCGG 0.799404 -97 AAGACTAGGTCCCGTACCGGCACCCTAACA 35 86 0 CCCGTACCGG 0.829415 -71 GCGCGAACGCGGGTCGGCGTCTCCAGTTTC 36 62 1 GGGTCGGCGT 0.792187 -199 TGAGGCAGGGTCGGGGCCGCCGTTTTTCCA 36 104 0 TCGGGGCCGC 0.735055 -157 CCCCGACCCTGCCTCAGCGTCGCAGCCGTC 36 118 1 GCCTCAGCGT 0.699388 -143 CGGTCACCGGTGCTCGCCGCCAACGACGGC 36 142 0 TGCTCGCCGC 0.944098 -119 ACCAAAGTCACGGTCACCGGTGCTCGCCGC 36 152 0 CGGTCACCGG 0.780635 -109 CGCTGACCTCCTGGGGCCGGCAAAGCACCC 38 13 1 CTGGGGCCGG 0.815165 -185 GACGGCGCAGACCGGGCCGCTTCGACTCAG 38 77 1 ACCGGGCCGC 0.532436 -121 TTGGTTGGTAGCGTCGCCGATCCCAAGGGA 38 150 1 GCGTCGCCGA 0.772623 -48 ATGATCGGTATCCTGAGCGGAACATAAGTC 39 28 1 TCCTGAGCGG 0.728365 -273 TCGCAAGCCTGGAGGCCCGCAGACACAGCA 39 213 1 GGAGGCCCGC 0.571044 -88 CAGCAAGCGAGGAGCGGCGCGTATGAGCCG 39 238 1 GGAGCGGCGC 0.967675 -63 GCGCGTATGAGCCGCGCCGGCGACGATGCG 39 254 1 GCCGCGCCGG 0.94385 -47 GTGATGAGGAGGAGCGGCGC 39 291 1 GGAGCGGCGC 0.967675 -10 CGGGCGAATGCTATCGCCGCGAGAAGTCAT 40 44 0 CTATCGCCGC 0.584803 -63 GAGGACATGAGGCGCGCCGAGACCCGTAAG 40 76 1 GGCGCGCCGA 0.924882 -31 CGGATGACAACGCTGGCCGGGAACCCGGGC 41 78 0 CGCTGGCCGG 0.949486 -109 TTAGCCCCCGCGGGCACCGCTGGGCGAGCC 41 123 1 CGGGCACCGC 0.907952 -64 TTCAACACGTCGCGCGGCGAAATGACAACT 43 24 1 CGCGCGGCGA 0.840116 -277 AGGGGCGCCGTGAGGGGCGTCACGGTCGAG 44 14 0 TGAGGGGCGT 0.471966 -163 GTCGGTGTACGCAGGGGCGCCGTGAGGGGC 44 26 0 GCAGGGGCGC 0.968491 -151 CCAACCATCCCCCTGCCCGCTTGGGTTATC 44 126 1 CCCTGCCCGC 0.622307 -51 CATTTGCGATGCCTGGGCGGGGATGCTGGC 45 15 0 GCCTGGGCGG 0.974604 -70 GGACGAGACAGCCCCGCCGAATGTGACAGC 46 22 0 GCCCCGCCGA 0.894197 -60 ATTCCAGCATGGGTCGGCGGGAGGACAC 46 64 1 GGGTCGGCGG 0.952778 -18 GCGGTTTGCCGCCGCGCCGCCACATGCCAA 47 43 1 GCCGCGCCGC 0.911327 -30 AGCTCGCATGGGCGGGCCGCACTGCTTTGC 48 26 1 GGCGGGCCGC 0.991443 -56 CGAGGCTACCCCGGCGCCGTGATCGCCTGC 49 15 0 CCGGCGCCGT 0.660121 -25 GCTCGAATGTCGTTGGGCGCAACCGCCATA 50 21 0 CGTTGGGCGC 0.700744 -74 GGTGCCGGGCTCCGCGGCGCAA 52 3 0 TCCGCGGCGC 0.973999 -298 GGCACTGCTGGCGGTGCCGGGCTCCGCGGC 52 15 0 GCGGTGCCGG 0.501302 -286 ACGTCCAGGTCGGCGACCGCAATACCGACG 52 123 1 CGGCGACCGC 0.847939 -178 TATGACTACCTCCTCAGCGCACCCGAAAGC 52 272 0 TCCTCAGCGC 0.825573 -29 TCTATTGGGCGCCCGGGCGCG 53 34 1 GCCCGGGCGC 0.985183 -11 AGGCCTCATTGCCGCGTCGGGTCTTTAGAT 54 77 0 GCCGCGTCGG 0.62563 -42 GGGCTCGAACCGCGTGGCGCGCGGTGTGGG 55 46 1 CGCGTGGCGC 0.93629 -175 GCGCGGTGTGGGCGCACCGTCTCGAGTCGG 55 64 1 GGCGCACCGT 0.836119 -157 ATCCGGTACGCCCGCGCCGCGGAGAGCGCC 55 119 0 CCCGCGCCGC 0.927812 -102 AACGCTACGGGGCGCGCCGTGCCGTAGTAG 55 190 1 GGCGCGCCGT 0.953185 -31 GTCGCACTCTGCCTGGCCGTCGTCGGAGCC 56 13 1 GCCTGGCCGT 0.902909 -117 CAACCCATTTGGCCTGGCGGCCAAGATGAC 56 54 1 GGCCTGGCGG 0.920821 -76 GGGATCGGACCGGTTGCCGCCGACTCGACG 57 54 1 CGGTTGCCGC 0.819322 -180 GAGGACATCAGGACCGGCGGGTTGACAGAT 57 125 0 GGACCGGCGG 0.928524 -109 AGCCCGGTGGGTGTGGCCGGCTGACGGGAT 59 18 0 GTGTGGCCGG 0.768237 -159 CGGGCGCTTCGGACGGGCGCAGGTTAAATC 59 94 1 GGACGGGCGC 0.933164 -83 CCGTGGCGGCCCATGGCCGCAAGGAGGCTC 59 151 0 CCATGGCCGC 0.905916 -26 CGAGACCCGTGGCGGCCCATGGCCG 59 162 0 CCCGTGGCGG 0.933138 -15 CCGCTGCCCGTCCCCGGCGCGACCTATGGA 60 48 0 TCCCCGGCGC 0.96135 -253 GCGCCGGGGACGGGCAGCGGGTCGTGTGCG 60 58 1 CGGGCAGCGG 0.866963 -243 CACGGTGTTTTCGTGGGCGCTTTTCTGCTG 60 151 0 TCGTGGGCGC 0.896417 -150 ACGAAAACACCGTGGGGCGCCACACACGTT 60 167 1 CGTGGGGCGC 0.851701 -134 CACTCAATTTGCATGGCCGACAACAGTTTG 61 14 0 GCATGGCCGA 0.593065 -60 CCGCTACCGTCGCCGGCCGCCGCAGTCACA 61 42 0 CGCCGGCCGC 0.974288 -32 AGGCTGTCAAGCGGCACCGCACACAACAGG 62 66 1 GCGGCACCGC 0.500109 -34 CAGGGGTTGGCCGGAACCGGGGCT 63 5 1 GGTTGGCCGG 0.799404 -60 GGCTTAGGCCGCCGGAGCGCGCTTGCCCGA 63 31 1 GCCGGAGCGC 0.969532 -34 ACCGGTCGGATGCCCGGCGCGCTGCGGTGG 65 31 1 TGCCCGGCGC 0.950636 -194 CCGGCGCGCTGCGGTGGCGCCCTTTGCGTA 65 44 1 GCGGTGGCGC 0.50111 -181 ATCGGTCTATTCCGCACCGGCATCAACCCC 66 83 1 TCCGCACCGG 0.914431 -83 GCGATGAGGAGGAGCGGCGCAGATGAGT 67 9 0 GGAGCGGCGC 0.967675 -292 GCGCAGATGAGTCGCGCCGGTGACGATGCA 67 46 0 GTCGCGCCGG 0.946414 -255 GCGATGAGCAGGAGCGGCGCAGATGAGTCG 67 62 0 GGAGCGGCGC 0.967675 -239 GCGCAGATGAGTCGCGCCGGTGACGATGCA 67 99 0 GTCGCGCCGG 0.946414 -202 GCGATGAGCAGGAGCGGCGCAGATGAGTCG 67 115 0 GGAGCGGCGC 0.967675 -186 GCGCAGATGAGTCGCGCCGGTGACGATGCA 67 152 0 GTCGCGCCGG 0.946414 -149 GCGATGAGCAGGAGCGGCGCAGATGAGTCG 67 168 0 GGAGCGGCGC 0.967675 -133 GCGCAGATGAGTCGCGCCGGTGACGATGCA 67 205 0 GTCGCGCCGG 0.946414 -96 GCGATGAGGAGGAGCGGCGCAGATGAGTCG 67 221 0 GGAGCGGCGC 0.967675 -80 TCGCTGACCATGCGCGCCGGTGACGATGCA 67 258 0 TGCGCGCCGG 0.967819 -43 GTTTATCTAACGGTGGCCGTCGAGGAATTT 68 94 0 CGGTGGCCGT 0.676519 -207 GCACGTTCGAGTCGTGCCGGGGGCACTGTG 68 186 1 GTCGTGCCGG 0.803867 -115 GAATACCATTGCCCCCGCGGTGCGTCTAGG 69 15 0 GCCCCCGCGG 0.746797 -68 CTCCGCCTGGTGCCTACCGCATGTCTGACT 70 91 0 TGCCTACCGC 0.58959 -25 ACGCAGGTGCGGGGTGGCGGTCGTGGCAGC 71 21 0 GGGGTGGCGG 0.912389 -32 ACGCAAGCTCGCCGTGGCGTTACGCTCGCA 72 31 1 GCCGTGGCGT 0.840687 -105 TGGCGTTACGCTCGCAGCGGCTGGCGCGCC 72 45 1 CTCGCAGCGG 0.653958 -91 TCGGCAGGTAGCCGGGGCGCGCCAGCCGCT 72 60 0 GCCGGGGCGC 0.989692 -76 TGGTGATTGAGGAGTGGCGCAG 73 13 1 GGAGTGGCGC 0.874238 -12 CAAAGCTAACGCCTTGGCGGGCGGATTCGG 74 85 0 GCCTTGGCGG 0.919388 -24 TCAGTCAGCTTCCGGGCCGAATGTCGGTGG 75 37 1 TCCGGGCCGA 0.793594 -30 CCGTTGCCGTCCCGGACCGCATCCCCCTAC 77 57 0 CCCGGACCGC 0.957333 -145 CAGTGTGCCACCGTTGCCGTCCCGGACCGC 77 67 0 CCGTTGCCGT 0.471483 -135 GAACAGCGGCCCATCGCCGTGCGACGTAGG 77 107 0 CCATCGCCGT 0.628456 -95 GTCTGCTCACGCCGTAGCGGTTGGTCGAAC 78 78 1 GCCGTAGCGG 0.873482 -67 ATCACATTATGCGTCAGCGGGAACTACCGC 79 82 0 GCGTCAGCGG 0.867245 -49 GACTGCACTGGTGGCGCCGGTGTGTCGGGA 81 76 1 GTGGCGCCGG 0.866969 -163 TATTCGACGAGCCCGGGCGACCACTCAGAT 81 116 1 GCCCGGGCGA 0.864631 -123 TCACGCGGCCTGCTGGGCGCGTGTCGTAGA 81 145 1 TGCTGGGCGC 0.911219 -94 TGTCGTAGACCGTTCGGCGGCTGACGGGTG 81 166 1 CGTTCGGCGG 0.685468 -73 GGGCGATCTTGCCCGAGCGTGCCGACAACG 81 210 1 GCCCGAGCGT 0.726577 -29 CTACCAATTCGTCACCGGCATCGCACAC 82 9 1 TCGTCACCGG 0.720922 -278 CCTTCCGCGTGCCGTGCCGCGTCCGCTGTG 82 50 0 GCCGTGCCGC 0.956452 -237 AATTTCTTAGCGACGGCCGGCGTCGTTGCC 82 115 0 CGACGGCCGG 0.876985 -172 TCATTTGTCGGGGCGGGCGCGGCCTTATTC 82 158 0 GGGCGGGCGC 0.967463 -129 GCAGCATGTCTGCGCAGCGCCAGCCGATCT 82 242 0 TGCGCAGCGC 0.889928 -45 TGCTGATCGTGCCGGAGCGAATTCGC 84 7 0 GCCGGAGCGA 0.729092 -294 GGAATCGTCAGCCGCGGCGTCAGCGCTGGC 84 111 0 GCCGCGGCGT 0.957536 -190 TCGTATGAAAGCGGCAGCGCAGCCGTCTGC 84 252 1 GCGGCAGCGC 0.502911 -49 TGGGGCCGTACCGGTTGGGCCCCA 85 5 1 GCCGTACCGG 0.89711 -33 GAACGCGTGCTGTCCGGCGGG 86 2 0 TGTCCGGCGG 0.618902 -213 CGGGGTCGACGGCTGGCCGAGTGCTACCGT 86 33 0 GGCTGGCCGA 0.796658 -182 ACCCCGATTCGCGCGGGCGGAAAGCGTTGG 86 57 1 GCGCGGGCGG 0.615722 -158 CTGCAACGGCCCGCCGGCGGAGTCTGGCAT 86 88 1 CCGCCGGCGG 0.49915 -127 TGTAGGACCAGGCCTGCCGCCAGCCTGATC 86 129 1 GGCCTGCCGC 0.953608 -86 AAACATCCAGCCCGGACCGGGCCAAAACCC 86 184 0 CCCGGACCGG 0.942748 -31 CAGTATGTCACCATCGCCGGGATCATCACT 87 13 0 CCATCGCCGG 0.899565 -288 GGTGACATACTGCTGGCCGCCTGCGTCCGG 87 31 1 TGCTGGCCGC 0.92946 -270 CGGAGTCAGCCCGCGACCGGACGCAGGCGG 87 47 0 CCGCGACCGG 0.67085 -254 GGCACGCTCCTGGTGACCGGAGTCAGCCCG 87 64 0 TGGTGACCGG 0.585636 -237 CGGGGAGATCTGGCCAGCGGCACGCTCCTG 87 82 0 TGGCCAGCGG 0.673483 -219 CAGATCTCCCCGCGGGCCGCGCGGGATAAG 87 100 1 CGCGGGCCGC 0.984491 -201 AGCAGTCCTACCATGGCCGGGTGGGATGGG 87 186 0 CCATGGCCGG 0.874874 -115 ACTGAGTTCACGCTCGGCGTAATAACGGCT 87 222 0 CGCTCGGCGT 0.779829 -79 ACTGGGTACACGCTCGGCGAAAGGATGGTG 87 276 1 CGCTCGGCGA 0.681783 -25 TATCGCAACGGCAGTGCCGC 90 21 1 GCAGTGCCGC 0.905187 -10 GTGGAGCAACGGGCCGCCGAGCTGGGCGGA 92 12 0 GGGCCGCCGA 0.795429 -180 ATAAGTGTCCGCCGGACCGCACCGGAAGCA 92 138 0 GCCGGACCGC 0.975565 -54 GACAAGTCCCCACCGTCGTTTTGCGA 92 176 0 TCCCCACCGT 0.549366 -16 CGCCATCTCCGTCGGCGTTGACCCCCGT 93 9 1 CCGTCGGCGT 0.749472 -33 ATCGCCCGCGGCGGCACCGCGTC 94 4 0 GCGGCACCGC 0.500109 -233 CCCAAGTCTGTCGCCGCCGCGGCCAGCATC 94 90 0 TCGCCGCCGC 0.51477 -147 AGGTCAGGGATCAGCGCCGCCTATGCGCGT 94 127 1 TCAGCGCCGC 0.931283 -110 GGTGCCGACCTGTGCCGCGTCTCGAGTT 94 219 0 CCTGTGCCGC 0.745375 -18 GAAGACGGCCGGGTTGCCGTTGGCGTTGGT 95 124 1 GGGTTGCCGT 0.531568 -91 GCGGACCGCATCGTCGCCGGGCTAGGCAGG 97 12 0 TCGTCGCCGG 0.904712 -59 CGGTCCGCTGCGCGGACCGCATCGTCGCCG 97 23 0 CGCGGACCGC 0.94086 -48 GGCCGTGGTTGCACCGGCGCAAAGATGGTT 98 23 0 GCACCGGCGC 0.92107 -23 GCCGGTGCAACCACGGCCGAT 98 35 1 CCACGGCCGA 0.538504 -11 GGTTGCCACGGCCGCCACCTCTTTC 99 6 1 CCACGGCCGC 0.931396 -68 GTAAAACATGCCTTCACCGCAGACAAAAGG 100 64 0 CCTTCACCGC 0.580925 -48 GTGAGTGGTACCCCCACCGCATCGTCGTCG 102 23 0 CCCCCACCGC 0.933609 -42 GACATCTGGGGTATCGGCGGAGAGTGCCTA 103 85 0 GTATCGGCGG 0.592576 -216 CGATCCTGCACCTGGGCCGGGCTGTGCGGG 103 140 1 CCTGGGCCGG 0.883307 -161 ATGCGCCCTTCGCTCACCGGGGCATTAGAT 103 201 0 CGCTCACCGG 0.857892 -100 TTTCATGACCGCGCGAGGTGGT 105 3 1 TCATGACCGC 0.551211 -269 AGGTGGTGCGTCGGGAGCGCTACTGGTGTT 105 26 1 TCGGGAGCGC 0.794992 -246 GCAGCTCCTCTTCCGGGCGGTTCGTTTGCA 105 81 1 TTCCGGGCGG 0.641291 -191 AGCGTTGGCGGCCGGACCGGGCCGAAGATG 106 16 0 GCCGGACCGG 0.96748 -228 ATAAATCGGATTCGTGGCGCTTCAGTGTTA 106 115 0 TTCGTGGCGC 0.55075 -129 CCGCCGACCTTTCGCGGCGCTTCGGTGACT 106 222 0 TTCGCGGCGC 0.840936 -22 CACCGCACCAGGCTCGCCGCCCCCATTAGA 107 17 1 GGCTCGCCGC 0.983759 -92 GGAGTCTGGTGCCGCGCCGCCACGCCAACA 107 67 1 GCCGCGCCGC 0.911327 -42 CCCGATTCGACCCTGACCGGC 108 2 0 CCCTGACCGG 0.871179 -38 CGGTGAGGATGCGGGGCCGCGGAGGTTGTC 109 35 0 GCGGGGCCGC 0.537809 -51 CGGCCCCGCATCCTCACCGCCCTTAACCGC 109 46 1 TCCTCACCGC 0.858681 -40 TCCGTTAGCGGTAGCGCCCCGTTCGAC 111 8 1 GCGGTAGCGC 0.496894 -72 GTTCATCGGTGGACCGCCGCCTAGCGTCCA 112 28 0 GGACCGCCGC 0.958228 -261 CATCAACGTACGCGGGGCGGTGTCGAGTCG 112 62 0 CGCGGGGCGG 0.972906 -227 CGCACATCAACCCCTACCGCGCTCACGTCG 112 214 0 CCCCTACCGC 0.799413 -75 CGCGGGTAACCCGTTGGCGGAGCCGACACC 112 242 1 CCGTTGGCGG 0.778159 -47 AGCCGACACCCGGTGGCCGCCGGCAGAGCC 112 262 1 CGGTGGCCGC 0.938495 -27 GATGCGAGCTGCCTGGCCGCTATCGGATGA 113 21 1 GCCTGGCCGC 0.98547 -177 ATGTCGTGCACGTCTGCCGCAAGGATCATC 113 46 0 CGTCTGCCGC 0.566714 -152 CGGGCGAAGCCGCGTAGCGGGCCGGTACCG 113 83 1 CGCGTAGCGG 0.727845 -115 GCCATCCCGCCCGTTGCCGCACTCCCTCTA 113 113 0 CCGTTGCCGC 0.840067 -85 GCAACGGGCGGGATGGCCGCGCTATCGCGC 113 126 1 GGATGGCCGC 0.924493 -72 AAGGGGTGCACCCGCGCCGCGCGATAGCGC 113 144 0 CCCGCGCCGC 0.927812 -54 GCTAACAGAGTCGGTAGCGCACGCGAAAGG 113 170 0 TCGGTAGCGC 0.49975 -28 ACCACAAGGGTCACCGCCGCTAGATGTTGT 114 23 0 TCACCGCCGC 0.896098 -157 ACCCTTGTGGTCGCCGCCGCTAGATGTTTC 114 42 1 TCGCCGCCGC 0.51477 -138 AACCACACGGCCCGCGGCGGGAGCTAGGGA 114 82 0 CCCGCGGCGG 0.962437 -98 CTAGGGGTTGGCCGGGGCGGTCTGACGCCG 114 126 1 GCCGGGGCGG 0.988036 -54 TGTCAGTATTGCCCCCGCGCTCATTGCCCC 115 11 0 GCCCCCGCGC 0.786956 -284 AATTGAGCCGGCACTAGCGGTCGACACATG 115 51 1 GCACTAGCGG 0.519402 -244 TGGCCGTGAACGACCGCCGGATAAGGGTTT 115 131 1 CGACCGCCGG 0.901334 -164 CGCATCAAGCGCACCGCCGAAACCCTTATC 115 150 0 GCACCGCCGA 0.716885 -145 AGCACTGCCGGGCCCAGCGCCTGCAGTCTG 115 212 1 GGCCCAGCGC 0.945373 -83 TCGGGGTGCTGCCCCGCCGGCCGGTGGTCG 116 34 1 GCCCCGCCGG 0.949857 -55 GCCGGCCGGTGGTCGGGCGGGTCGGTCGGC 116 49 1 GGTCGGGCGG 0.819639 -40 CGGGCGGGTCGGTCGGCCGGTGTTTCCGTA 116 62 1 GGTCGGCCGG 0.853674 -27 GCGACTTCGCCGCGTGGCGCCCGT 117 5 0 CGCGTGGCGC 0.93629 -24 TGGATTATGTGTGGCGCCGGGTTCGCCGGC 118 27 1 GTGGCGCCGG 0.866969 -237 TGCCATGCACTCGCGACCGCGGGAGCCGGC 118 51 0 TCGCGACCGC 0.747096 -213 CGACCAGTGTGGTTGGCCGGAGGTCGTTTG 118 158 0 GGTTGGCCGG 0.799404 -106 CCGCAGGTGCGCATGGCCGACCAGTGTGGT 118 175 0 GCATGGCCGA 0.593065 -89 CCCGTTCGGGCCATGACCGCCACGAGCTGC 118 210 1 CCATGACCGC 0.706995 -54 GGCAGCCCGCGGTCTGCCGCAGTCTGAAGT 119 134 1 GGTCTGCCGC 0.704824 -73 GAAGTTCGCGGCCTGAGCGCGCGCTATCTT 119 159 1 GCCTGAGCGC 0.929798 -48 TATCTTCCACGCCGGGCCGGTAGTCTGACG 119 183 1 GCCGGGCCGG 0.989359 -24 ********** Masking position 8 Map Score: 316.867 Number of sites scoring better than the average of aligned sites = 91761 Number in coding regions = 85821 Number in noncoding regions = 5940 Number of orfs with sites within 600 bp upstream = 1573 Fraction of orfs with sites within 600 bp upstream = 0.25265 Motif number 2 TCACCCAATACCGCACCTTTCGACGTTATC 1 24 0 CCGCACCTTT 0.641192 -277 GGACCTGAAAGCGCATCCACCACCGAAGGT 1 139 0 GCGCATCCAC 0.660493 -162 AGCCGCTAGACCGCACCTACGATGGTCTTG 4 11 1 CCGCACCTAC 0.969367 -31 TCGCGCTGCAGCACACCTTCGAGAGTGCAT 5 49 0 GCACACCTTC 0.732195 -38 ATCGCAGCTACGGCACCGAACTGTGGCGAA 10 44 0 CGGCACCGAA 0.697183 -257 CGTACTGGAACCGCATCGCAATGCGGTTGT 10 101 1 CCGCATCGCA 0.845833 -200 TCGCTGCGCTCGGCATCGTCGCCGGCGGTC 17 61 0 CGGCATCGTC 0.906629 -38 ATGCGCCGCTCCTCCTCATCGCTGC 17 84 0 CCGCTCCTCC 0.989854 -15 CTGGGCACCTCCCTGGAACAAA 23 85 0 GGGCACCTCC 0.935417 -12 CGATCCAGAGCCGCTTCGACCAGCCTGTGG 25 158 1 CCGCTTCGAC 0.917504 -143 TTCAACTGATCCGCTTCGACCACAGGCTGG 25 177 0 CCGCTTCGAC 0.917504 -124 GCTCATGTTTCCACTCCTCCGGTTCAACTG 25 199 0 CCACTCCTCC 0.942992 -102 GCCTAATCCTCCGCACCAGCAGCAAATTTC 29 12 1 CCGCACCAGC 0.907741 -183 CTGGTGAGACCCACACCCTCGGATCACGTC 29 152 0 CCACACCCTC 0.886825 -43 TCAAGCCCCGCGGCACCTACCGTTGACTT 30 13 1 CGGCACCTAC 0.927102 -19 TTCCGGCGCTGCGCTCCATCATGGCTAGTA 32 35 0 GCGCTCCATC 0.576003 -171 TGGCCGATACCCGCATCTGTTCCGGCGCTG 32 54 0 CCGCATCTGT 0.429079 -152 CTACCGCTCCCAACTTCTCCGAC 34 4 1 CCGCTCCCAA 0.683716 -198 TCGCTGCGGCGCGCATCGTCGCCCGGATAG 35 22 0 GCGCATCGTC 0.876727 -135 GGTCCCGTACCGGCACCCTAACAGGGCCCC 35 79 0 CGGCACCCTA 0.653655 -78 GCAGACCGGGCCGCTTCGACTCAGGAAGCG 38 83 1 CCGCTTCGAC 0.917504 -115 CTCATACGCGCCGCTCCTCGCTTGCTGTGT 39 235 0 CCGCTCCTCG 0.935137 -66 CGCGTATGAGCCGCGCCGGCGACGATGCGG 39 255 1 CCGCGCCGGC 0.962382 -46 TCACTTCGTTCCGCATCGTCGCCGGCGCGG 39 265 0 CCGCATCGTC 0.960255 -36 GCGCCGCTCCTCCTCATCACTTC 39 288 0 CCGCTCCTCC 0.989854 -13 CTCGAACGCGCTTCTCGGGGGAACCCG 40 8 1 GCGCTTCTCG 0.51233 -99 GACGGCTCCCGGCATGGACAAG 42 41 0 CGGCTCCCGG 0.787959 -12 AGAGGCTCAGCCGCTTCGTCACATGCTGTA 43 120 0 CCGCTTCGTC 0.950625 -181 CACATTTGGTCCACACCGTGACGGGTTTGT 43 223 1 CCACACCGTG 0.70975 -78 CTGCGTACACCGACTTCGACTCTGCGTCAA 44 42 1 CGACTTCGAC 0.431118 -135 CGGTTTGCCGCCGCGCCGCCACATGCCAAG 47 44 1 CCGCGCCGCC 0.971143 -29 CCGCGGAGCCCGGCACCGCCAGCAGTGCCT 52 16 1 CGGCACCGCC 0.988721 -285 ACGACGATCAGGGCATCCGCGAGGCACTGC 52 37 0 GGGCATCCGC 0.6969 -264 TACCTCCTCAGCGCACCCGAAAGCCGATCT 52 266 0 GCGCACCCGA 0.701366 -35 GACGGTGCGCCCACACCGCGCGCCACGCGG 55 55 0 CCACACCGCG 0.845322 -166 CGCGGTGTGGGCGCACCGTCTCGAGTCGGT 55 65 1 GCGCACCGTC 0.966365 -156 TTCCCGAACTCGGCATCTTCGTCAGTCCTG 57 184 1 CGGCATCTTC 0.84496 -50 CGTCAGCCGGCCACACCCACCGGGCTTCAC 59 22 1 CCACACCCAC 0.819053 -155 CACAACCCACCGACACCGTCACTACCCTCA 60 206 1 CGACACCGTC 0.869289 -95 TATCGGTATACCGCTTCTGCGTAACGATTT 60 235 0 CCGCTTCTGC 0.948345 -66 GGCTGTCAAGCGGCACCGCACACAACAGGA 62 67 1 CGGCACCGCA 0.899065 -33 TCGGGCAAGCGCGCTCCGGCGGCCTAAGCC 63 31 0 GCGCTCCGGC 0.974936 -34 GTCCGCTCCTTACTGGACGTGA 65 213 0 CCGCTCCTTA 0.816028 -12 TCGGTCTATTCCGCACCGGCATCAACCCCT 66 84 1 CCGCACCGGC 0.994005 -82 CTCATCTGCGCCGCTCCTCCTCATCGCTTC 67 12 1 CCGCTCCTCC 0.989854 -289 CTCATCTGCGCCGCTCCTGCTCATCGCTTC 67 65 1 CCGCTCCTGC 0.986696 -236 CTCATCTGCGCCGCTCCTGCTCATCGCTTC 67 118 1 CCGCTCCTGC 0.986696 -183 CTCATCTGCGCCGCTCCTGCTCATCGCTTC 67 171 1 CCGCTCCTGC 0.986696 -130 CTCATCTGCGCCGCTCCTCCTCATCGCTTC 67 224 1 CCGCTCCTCC 0.989854 -77 AAACTGACCTGCGCATCGCCTCCGTAGCTC 68 120 1 GCGCATCGCC 0.94081 -181 CGGGCACCTCCGTGGTTTGAG 68 290 0 GGGCACCTCC 0.935417 -11 GACCGCCACCCCGCACCTGCGTAACATCGA 71 29 1 CCGCACCTGC 0.989369 -24 CTGCGCCACTCCTCAATCACCAGA 73 10 0 CCACTCCTCA 0.626968 -15 CCGAATCGCCCGGCTCCTCCTCACCCCG 77 9 0 CGGCTCCTCC 0.97513 -193 CCGTCCCGGACCGCATCCCCCTACATTGAG 77 51 0 CCGCATCCCC 0.96236 -151 GATTTCGTTCCCACTTCGCCGGGTCGTTAG 78 114 1 CCACTTCGCC 0.879451 -31 GTCGGCTCCGCGTCGTCACAGT 79 3 1 CGGCTCCGCG 0.911685 -128 GGCCACACCCTCCTGGCATCTT 81 3 1 CCACACCCTC 0.886825 -236 CGACACCTACGTTGTCGGCA 81 229 0 CGACACCTAC 0.683169 -10 ATGAATAAGGCCGCGCCCGCCCCGACAAAT 82 156 1 CCGCGCCCGC 0.923745 -131 CGCACTCCTCCAAACATCCAG 86 204 0 GCACTCCTCC 0.829621 -11 CAGTTGTTCAGCACATCTTCACCTGCGAAA 92 83 1 GCACATCTTC 0.403627 -109 GTCCGCCGGACCGCACCGGAAGCAGAAGGC 92 132 0 CCGCACCGGA 0.943973 -60 TCGCCCGCGGCGGCACCGCGTC 94 3 0 CGGCACCGCG 0.928338 -234 GCTGCGCGGACCGCATCGTCGCCGGGCTAG 97 17 0 CCGCATCGTC 0.960255 -54 TTCGATTCGCCCGCTCCTTCTCGGTCCGCT 97 44 0 CCGCTCCTTC 0.977606 -27 TGCACTCCTGCGGGTTCGCTA 101 44 0 GCACTCCTGC 0.787305 -11 GGTACCCCCACCGCATCGTCGTCGACACGG 102 17 0 CCGCATCGTC 0.960255 -48 AACCGCTCCTCTCCCGTTGCCA 102 53 0 CCGCTCCTCT 0.760914 -12 AACACCAGTAGCGCTCCCGACGCACCACCT 105 26 0 GCGCTCCCGA 0.651756 -246 ATCGGTGAAACGGCACCCACAGCACGCTAT 106 157 1 CGGCACCCAC 0.914746 -87 TTCGCACACCGCACCAGGCTCGCCGCCC 107 9 1 CCGCACCAGG 0.592493 -100 GAGTCTGGTGCCGCGCCGCCACGCCAACAC 107 68 1 CCGCGCCGCC 0.971143 -41 CTCCGCGGCCCCGCATCCTCACCGCCCTTA 109 41 1 CCGCATCCTC 0.919618 -45 CCGGGCGACTCGACACCGCCCCGCGTACGT 112 57 1 CGACACCGCC 0.936961 -232 CACCGGGTGTCGGCTCCGCCAACGGGTTAC 112 247 0 CGGCTCCGCC 0.985887 -42 CAGCTCGCATCGGCACCTGGC 113 2 0 CGGCACCTGG 0.846798 -196 GCCCGCTACGCGGCTTCGCCCGAGTCGCGA 113 75 0 CGGCTTCGCC 0.945334 -123 GCCCGTTGCCGCACTCCCTCTACGGTACCG 113 105 0 GCACTCCCTC 0.647656 -93 CGGCGTCAGACCGCCCCGGCCAACCCCTAG 114 126 0 CCGCCCCGGC 0.87902 -54 CCCGCATCAAGCGCACCGCCGAAACCCTTA 115 152 0 GCGCACCGCC 0.984665 -143 CACGGCGACTTCGCCGCGTGGCGCC 117 14 0 CGACTTCGCC 0.745674 -15 CCGGGTTCGCCGGCTCCCGCGGTCGCGAGT 118 43 1 CGGCTCCCGC 0.961755 -221 GGTCGGCCATGCGCACCTGCGGTGAAACCC 118 183 1 GCGCACCTGC 0.964784 -81 ********** Masking position 4 Map Score: 111.356 Number of sites scoring better than the average of aligned sites = 18745 Number in coding regions = 17557 Number in noncoding regions = 1188 Number of orfs with sites within 600 bp upstream = 812 Fraction of orfs with sites within 600 bp upstream = 0.130421 Motif number 3 GACAAATGTCCCGCAGGCTGCGGTAAACCC 1 252 0 CCGCAGGCTG 0.917189 -49 TGGACACGGCCGGCGCCCCGGACAACAGTG 3 17 0 CGGCGCCCCG 0.892789 -156 GAGACCTAACCGGCGGCCCCGAAGCGTAGT 7 13 1 CGGCGGCCCC 0.948451 -76 CACCGGCATCACGAGAACCAGAG 8 4 1 CGGCATCACG 0.630488 -39 CCAGCATCAACGACGTGCCGATCGCCGAAT 10 13 0 CGACGTGCCG 0.886208 -288 AGCTGCGATACCACTGGCCGTTGCGGTCAC 10 65 1 CCACTGGCCG 0.905618 -236 CGTCAACGTACGACAGCCCGTCTTGACGGA 12 70 1 CGACAGCCCG 0.957432 -44 AACGCCACATGCTGGCAGGCTATC 13 5 1 CCACATGCTG 0.36937 -52 GTTCGACTAACCGCAGCCTGCCAAAGCCAT 14 52 0 CCGCAGCCTG 0.960225 -41 GTCGATAGCCTAGCGGGCCGTAGGGTGTGC 18 13 1 TAGCGGGCCG 0.940218 -23 CCGAAACGTCCAACAGCATGGGAAGGCGAG 22 92 1 CAACAGCATG 0.234646 -22 CTCCCCGGGACGGCGGCCTGGCCAAGCTCT 23 28 1 CGGCGGCCTG 0.990231 -69 CTCAATACTGCCCCGGCCCGGTAGCCTCGC 24 14 0 CCCCGGCCCG 0.938059 -22 CAACAAGCCGCCGCGTGAGGACGAACCCTA 25 14 1 CCGCGTGAGG 0.569938 -287 GATGACCGAGCGGCAGCCTGTACGATTAAC 25 119 0 CGGCAGCCTG 0.964681 -182 TCCGCTTCGACCACAGGCTGGTCGAAGCGG 25 168 0 CCACAGGCTG 0.870166 -133 TCGAATTTCCCGTCGGGCCGCTCATGTTTC 25 218 0 CGTCGGGCCG 0.858159 -83 CCAGACAGCTCGGCGGCCTGGTGGCCAGGA 25 251 1 CGGCGGCCTG 0.990231 -50 GAAACACCAATCGCAGCACGCTTGCTAACT 26 52 0 TCGCAGCACG 0.698571 -100 CCGGATCCGCAGGACGTCGATCCGTG 27 7 1 CCGCAGGACG 0.947722 -268 TGCAAAAAGTCCGCAGGCCGTTGCCGAAAT 27 112 1 CCGCAGGCCG 0.833435 -163 GTCCGGCCAGCCGCGGCACGGGATGCTGCC 29 125 0 CCGCGGCACG 0.984544 -70 GCCGGAACGCCGACTGGCTGAGTGTAGGTC 33 27 0 CGACTGGCTG 0.755445 -72 CGGATGGTCGCGGCAGGAGGCAAGCCAGTC 34 169 0 CGGCAGGAGG 0.807456 -33 CATGGAAAAACGGCGGCCCCGACCCTGCCT 36 102 1 CGGCGGCCCC 0.948451 -159 GTGACTTTGGTAGCGGCCCGTCCGCAGTGG 36 171 1 TAGCGGCCCG 0.927813 -90 GCAAAGCACCCGGCGTCCCGTAGCGAAACG 38 32 1 CGGCGTCCCG 0.958302 -166 TGTGCGACGCCGACTGCCCGGGATTCGCCG 39 166 0 CGACTGCCCG 0.899819 -135 CAGCATGGGTCGGCGGGAGGACAC 46 68 1 CGGCGGGAGG 0.936732 -14 GAGCTCGCATGGGCGGGCCGCACTGCTTTG 48 25 1 GGGCGGGCCG 0.8882 -57 ACGGCGCTCTCCGCGGCGCGGGCGTACCGG 55 117 1 CCGCGGCGCG 0.883532 -104 TGTGGCCGGCTGACGGGATGGTTGTG 59 7 0 TGACGGGATG 0.437155 -170 CGCACACGACCCGCTGCCCGTCCCCGGCGC 60 58 0 CCGCTGCCCG 0.971932 -243 AGTGTGACTGCGGCGGCCGGCGACGGTAGC 61 40 1 CGGCGGCCGG 0.985953 -34 GCGACGGTAGCGGCATGATGGAGTG 61 59 1 CGGCATGATG 0.347351 -15 GCACCGCACACAACAGGACGGAGCAGCAAT 62 79 1 CAACAGGACG 0.574908 -21 GGCGCCACCGCAGCGCGCCGGGCATCCGAC 65 35 0 CAGCGCGCCG 0.479316 -190 GCTAACGCCTTGGCGGGCGGATTCGGCCTC 74 81 0 TGGCGGGCGG 0.926961 -28 TAGTTGTCAGTGGCGTGCTGTAGGAACAAC 77 179 1 TGGCGTGCTG 0.605566 -23 GACACGCGCCCAGCAGGCCGCGTGATCTGA 81 140 0 CAGCAGGCCG 0.780949 -99 AACGTCCCTTCCGCGTGCCGTGCCGCGTCC 82 56 0 CCGCGTGCCG 0.657292 -231 AATTTCTTAGCGACGGCCGGCGTCGTTGCC 82 115 0 CGACGGCCGG 0.945159 -172 AGTTCTGCTTCCGCAGCATGTCTGCGCAGC 82 254 0 CCGCAGCATG 0.825588 -33 CGAAACACACCGTCGGGCTGGCTTCGCTAA 84 67 0 CGTCGGGCTG 0.777077 -234 TCGGGGTCGACGGCTGGCCGAGTGCTACCG 86 34 0 CGGCTGGCCG 0.941575 -181 CAGACTCCGCCGGCGGGCCGTTGCAGACCA 86 84 0 CGGCGGGCCG 0.75054 -131 CTGCGTCCGGTCGCGGGCTGACTCCGGTCA 87 51 1 TCGCGGGCTG 0.938758 -250 GAGATCTGGCCAGCGGCACGCTCCTGGTGA 87 78 0 CAGCGGCACG 0.948337 -223 CCAGATCTCCCCGCGGGCCGCGCGGGATAA 87 99 1 CCGCGGGCCG 0.914235 -202 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 92 13 1 CGGCGGCCCG 0.995986 -179 TCTGTCGCCGCCGCGGCCAGCATCTCCGGG 94 84 0 CCGCGGCCAG 0.91998 -153 CGCGTCTTTATCACTGGCCGTCAGCAGCCG 95 171 0 TCACTGGCCG 0.567509 -44 GCGGTCCGCGCAGCGGACCGAGAAGGAGCG 97 33 1 CAGCGGACCG 0.714049 -38 AGCTCACACCCGACGGGCAGAAAGAGGTGG 99 25 0 CGACGGGCAG 0.785879 -49 ATCGAGGTCGCAGCTGGCCGAGCAAGCGCT 103 262 1 CAGCTGGCCG 0.914053 -39 AGCGGAGCGTTGGCGGCCGGACCGGGCCGA 106 21 0 TGGCGGCCGG 0.912894 -223 TCACCGATCACCACAGGACGATAAATCGGA 106 135 0 CCACAGGACG 0.824387 -109 GAAACGGCACCCACAGCACGCTATTAGGTA 106 163 1 CCACAGCACG 0.792156 -81 GCGACAACCTCCGCGGCCCCGCATCCTCAC 109 33 1 CCGCGGCCCC 0.941068 -53 CCGCAGTCGATAGCGGCACGATGTTCGTCA 110 20 1 TAGCGGCACG 0.715097 -48 CGAAGCCGCGTAGCGGGCCGGTACCGTAGA 113 87 1 TAGCGGGCCG 0.940218 -111 GGGAGTGCGGCAACGGGCGGGATGGCCGCG 113 117 1 CAACGGGCGG 0.841055 -81 CTAGCTCCCGCCGCGGGCCGTGTGGTTAGC 114 85 1 CCGCGGGCCG 0.914235 -95 GGGACCGACGCGACGGCCTGAAGGTGGCAT 115 97 0 CGACGGCCTG 0.959377 -198 GGGTGCTGCCCCGCCGGCCGGTGGTCGGGC 116 37 1 CCGCCGGCCG 0.545944 -52 CTGCGGCAGACCGCGGGCTGCCCATGCCAC 119 126 0 CCGCGGGCTG 0.967528 -81 AGTCTGAAGTTCGCGGCCTGAGCGCGCGCT 119 154 1 TCGCGGCCTG 0.925696 -53 CTATCTTCCACGCCGGGCCGGTAGTCTGAC 119 182 1 CGCCGGGCCG 0.944892 -25 ********** Masking position 4 Map Score: 103.553 Number of sites scoring better than the average of aligned sites = 16966 Number in coding regions = 15839 Number in noncoding regions = 1127 Number of orfs with sites within 600 bp upstream = 671 Fraction of orfs with sites within 600 bp upstream = 0.107774 Motif number 4 CGGGCTGCACTACCCGCGTCGCGCTGCAGCAC 5 65 0 TCCGCGTCGC 0.995048 -22 ACGTCGTTGATGCTGGCTTCGCCACAGTTCGG 10 27 1 TTGGCTTCGC 0.977454 -274 ATTCGTACTGGAACCGCATCGCAATGCGGTTG 10 98 1 GCCGCATCGC 0.876698 -203 CGAGCTCGACTATTCGCTACGCAAGAGTTTGT 10 143 0 TTCGCTACGC 0.832549 -158 ATGGAACACGTTCTCGTTTCGCGTTCGGCTTG 17 13 1 TTCGTTTCGC 0.92759 -86 TCGCCGGCGGTCATGGCGTCACCCTACCCAAG 17 41 0 TTGGCGTCAC 0.555744 -58 CCGCTCCTCCTCATCGCTGCGCTCGGCATCGT 17 72 0 TTCGCTGCGC 0.962875 -27 ACCAGGGGCCACGTCGCGTCGCGGACAGTCCC 34 116 1 ATCGCGTCGC 0.965833 -86 ATTGGAGTAGAGTCCGTTTCGCTACGGGACGC 38 44 0 ACCGTTTCGC 0.754939 -154 ACCGGTTGGTTGGTAGCGTCGCCGATCCCAAG 38 145 1 TTAGCGTCGC 0.925634 -53 AATCCCGGGCAGTCGGCGTCGCACAGCACGGT 39 171 1 ACGGCGTCGC 0.931317 -130 TGGTGCTACATTACCGTTTCGCGCGATCTCCG 44 155 0 TCCGTTTCGC 0.943378 -22 GGCGAGTAGCTTGGCATGTGGCGGC 47 58 0 GTAGCTTGGC 0.523924 -15 GCGGTGCCGGGCTCCGCGGCGCAA 52 3 0 GCCGCGGCGC 0.838867 -298 CGAGGCCTCATTGCCGCGTCGGGTCTTTAGAT 54 77 0 TCCGCGTCGG 0.868588 -42 CGTTGGGCTCGAACCGCGTGGCGCGCGGTGTG 55 42 1 GCCGCGTGGC 0.958523 -179 ACAACGGCGCTCTCCGCGGCGCGGGCGTACCG 55 114 1 TCCGCGGCGC 0.976777 -107 TCGTCAACGCTGACGGTTTCGCCCGACG 58 7 0 TCGGTTTCGC 0.858725 -45 TTCAACGGTGTCGGCGTTTCGCACGGTGCACT 60 96 0 TGCGTTTCGC 0.550485 -205 CCGCTCCTCCTCATCGCTTCGCTCTGCATCGT 67 22 1 TTCGCTTCGC 0.991655 -279 CCGCTCCTGCTCATCGCTTCGCTCTGCATCGT 67 75 1 TTCGCTTCGC 0.991655 -226 CCGCTCCTGCTCATCGCTTCGCTCTGCATCGT 67 128 1 TTCGCTTCGC 0.991655 -173 CCGCTCCTGCTCATCGCTTCGCTCTGCATCGT 67 181 1 TTCGCTTCGC 0.991655 -120 CCGCTCCTCCTCATCGCTTCGCTCTGCATCGT 67 234 1 TTCGCTTCGC 0.991655 -67 CCAACCTACGGTGTAGCGTCGCTGACCATGCG 67 274 0 GTAGCGTCGC 0.897688 -27 CAGGTCAGCATGGTGGCGTGGCTTGACACCGC 68 223 1 TTGGCGTGGC 0.900902 -78 CTGGATTTCGTTCCCACTTCGCCGGGTCGTTA 78 111 1 TCCACTTCGC 0.77421 -34 CACACCGTCGGGCTGGCTTCGCTAAGCCTAAT 84 60 0 GTGGCTTCGC 0.968673 -241 AGACCTTAACGAATCGCGTCGCGAGCCCGGGC 84 190 1 GTCGCGTCGC 0.991008 -111 GCTCCTTCTCGGTCCGCTGCGCGGACCGCATC 97 30 0 GCCGCTGCGC 0.960035 -41 CGGTGGGTTCGATTCGCCCGCTCCTTC 97 54 0 GTCGATTCGC 0.798987 -17 CAGGTGCAGGTGTTGGCGTGGCGGCGCGGCAC 107 75 0 TTGGCGTGGC 0.900902 -34 TCACCGCCCTTAACCGCGTCGCCTACCATCGA 109 59 1 TCCGCGTCGC 0.99505 -27 ACGCGGGGCGGTGTCGAGTCGCCCGGTTCATC 112 51 0 GTCGAGTCGC 0.837909 -238 GGCCACCGGGTGTCGGCTCCGCCAACGGGTTA 112 248 0 TCGGCTCCGC 0.777607 -41 CCGGCCCGCTACGCGGCTTCGCCCGAGTCGCG 113 76 0 ACGGCTTCGC 0.912476 -122 CACGGCGACTTCGCCGCGTGGCGCCCGT 117 7 0 TCCGCGTGGC 0.968205 -22 * ********* Masking position 6 Map Score: 45.1924 Number of sites scoring better than the average of aligned sites = 3124 Number in coding regions = 2810 Number in noncoding regions = 314 Number of orfs with sites within 600 bp upstream = 253 Fraction of orfs with sites within 600 bp upstream = 0.040636 Motif number 5 TATTGGGTGACCGTGTTGGCGCGTTGTCGCA 1 44 1 CCGTGTGGCG 0.864645 -257 CATCCACCACCGAAGGTGGCGGTGGGAACAG 1 125 0 CGAAGTGGCG 0.414751 -176 GACAGGCCCACGCTGGCGAGGGTTTACCGCA 1 233 1 CGCTGCGAGG 0.585824 -68 CTGGAATCTTCCGGGCGGTCGG 1 289 1 CCGGGGGTCG 0.470368 -12 CGGTCTTGGACACGGCCGGCGCCCCGGACAA 3 22 0 CACGGCGGCG 0.642431 -151 GTATTGGACGCCGGGCAGGCGAGCCCGGCAC 3 100 1 CCGGGAGGCG 0.965561 -73 TCCATGTGTTCGGTGTGCGGGTTCGGCACGA 3 139 0 CGGTGGCGGG 0.782054 -34 GGCTGCACTACCCGCGTCGCGCTGCAGCACA 5 64 0 CCCGCTCGCG 0.706438 -23 CGCACAGCGGCGGTGATCGCGTACGTCCAGA 6 63 0 CGGTGTCGCG 0.800976 -39 CACTACGCTTCGGGGCCGCCGGTTAGGTCTC 7 13 0 CGGGGCGCCG 0.594983 -76 CACCGGCATCACGAGAACCAGAG 8 3 1 CCGGCTCACG 0.75656 -40 AACCGGGTGACTAGGATCGCGGTTATCACCG 9 74 1 CTAGGTCGCG 0.243315 -21 ACGCATAAGTCCCTCGACACGCCGACGAGAA 10 239 0 CCCTCACACG 0.320621 -62 CTCCAGGCGTCCGTCAAGACGGGCTGTCGTA 12 78 0 CCGTCAGACG 0.622511 -36 GGCAGGCTATCGGACAGGGGGTCAATACGGA 13 24 1 CGGACGGGGG 0.623278 -33 GTTAGTCGAACGAGGATCGGGATGGTGGCCT 14 71 1 CGAGGTCGGG 0.47907 -22 TCGTCGCCGGCGGTCATGGCGTCACCCTACC 17 45 0 CGGTCTGGCG 0.689586 -54 CCGAGCGCAGCGATGAGGAGGAGCGGCGCAT 17 78 1 CGATGGGAGG 0.314454 -21 CGGTCAACGACGAGGGTGACGCTACTGCACT 19 52 0 CGAGGTGACG 0.609318 -43 CATTGGCTCCCCGGGACGGCGGCCTGGCCAA 23 22 1 CCGGGCGGCG 0.977668 -75 CGCGAGGCTACCGGGCCGGGGCAGTATTGAG 24 13 1 CCGGGCGGGG 0.957434 -23 ACGAACCCTACCGGGGAGACGCCACTCGTTG 25 34 1 CCGGGAGACG 0.932363 -267 AGGATCGTTACCGGGTAAGGGATCGCCACTC 25 277 1 CCGGGAAGGG 0.452574 -24 GTCGTCCAGGCGGTGTCAACGGCGCAGCTTC 27 205 0 CGGTGCAACG 0.414917 -70 GTTGACACCGCCTGGACGACGGTAGGGCGTC 27 216 1 CCTGGCGACG 0.7358 -59 TTCACGAGCGCTGACTACGCGCTGCTCCGGG 29 39 1 CTGACACGCG 0.180811 -156 ACGCGCTGCTCCGGGGAAACGTATCCCACAA 29 55 1 CCGGGAAACG 0.505563 -140 CTTTATGCGCCGGGGCCCACGAATACGGACG 29 95 1 CGGGGCCACG 0.875181 -100 TCCGGCCAGCCGCGGCACGGGATGCTGCCGT 29 123 0 CGCGGACGGG 0.708748 -72 CGTGCCGCGGCTGGCCGGACGTGATCCGAGG 29 135 1 CTGGCGGACG 0.5598 -60 TGGCGGATGGCTCGCAAGGCGACCGAGCCGA 32 124 0 CTCGCAGGCG 0.346798 -82 CTGTGCAAGCCGGTGGCGGCGGGGAATCCCG 32 178 0 CGGTGCGGCG 0.949014 -28 CCTGGTGCATCGGTCAGGACGGTGTAGCGGC 34 91 0 CGGTCGGACG 0.731149 -111 ACCGATGCACCAGGGGCCACGTCGCGTCGCG 34 108 1 CAGGGCCACG 0.625741 -94 CAACGAAGACCCTGCGGGAGGACAGCG 36 7 0 CCTGCGGAGG 0.264009 -254 TAGCGCGAACGCGGGTCGGCGTCTCCAGTTT 36 60 1 GCGGGCGGCG 0.677436 -201 GACGCTGAGGCAGGGTCGGGGCCGCCGTTTT 36 108 0 CAGGGCGGGG 0.649716 -153 TCGCAGCCGTCGTTGGCGGCGAGCACCGGTG 36 137 1 CGTTGCGGCG 0.602064 -124 GGGTGCTTTGCCGGCCCCAGGAGGTCAGCGC 38 12 0 CCGGCCCAGG 0.788019 -186 CAATGGACGGCGCAGACCGGGCCGCTTCGAC 38 72 1 CGCAGCCGGG 0.590335 -126 GACGCTGTTACCTAGGTCACGTGACCGACTT 39 53 0 CCTAGTCACG 0.12977 -248 GCGGCGAATCCCGGGCAGTCGGCGTCGCACA 39 165 1 CCGGGAGTCG 0.317951 -136 CAGTCGGCGTCGCACAGCACGGTTGCTGTGC 39 180 1 CGCACGCACG 0.368056 -121 CGCGTATGAGCCGCGCCGGCGACGATGCGGA 39 255 1 CCGCGCGGCG 0.783246 -46 GGCCCGGGTTCCCGGCCAGCGTTGTCATCCG 41 77 1 CCCGGCAGCG 0.451636 -110 GCGTTGTCATCCGGGTACACGATAAACCTTA 41 95 1 CCGGGACACG 0.909548 -92 GCTCGCCCAGCGGTGCCCGCGGGGGCTAAGG 41 121 0 CGGTGCCGCG 0.892785 -66 TCAAACTCTTCAGGGGAGGCGAGGCCC 41 170 1 CAGGGAGGCG 0.631958 -17 TCTGGCTCAGCCAACCCCGCGAACTTAGCTT 43 147 1 CCAACCCGCG 0.461086 -154 ACCGTGACGCCCCTCACGGCGCCCCTGCGTA 44 18 1 CCCTCCGGCG 0.761742 -159 ATAACCCAAGCGGGCAGGGGGATGGTTGGCG 44 124 0 CGGGCGGGGG 0.874152 -53 CTTGGGTTATCGGAGATCGCGCGAAACGGTA 44 145 1 CGGAGTCGCG 0.751699 -32 ATTTGCGATGCCTGGGCGGGGATGCTGGCAG 45 13 0 CCTGGCGGGG 0.621122 -72 CGGGGCAGGCGATCACGGCGC 49 1 1 CGGGGAGGCG 0.960305 -39 CAGGCGATCACGGCGCCGGGGTAGCCTCGCT 49 16 1 CGGCGCGGGG 0.548764 -24 CTGGCGGTGCCGGGCTCCGCGGCGCAA 52 7 0 CGGGCCCGCG 0.760246 -294 TTGGCATGATCCTGGTCCACGAGGAAATCAA 52 66 0 CCTGGCCACG 0.51063 -235 ATGGCAACGTCCAGGTCGGCGACCGCAATAC 52 117 1 CCAGGCGGCG 0.923005 -184 CTTTCGGGTGCGCTGAGGAGGTAGTCATAAC 52 273 1 CGCTGGGAGG 0.507912 -28 GCCCACACCGCGCGCCACGCGGTTCGAGCCC 55 46 0 CGCGCACGCG 0.720625 -175 GCGTGGCGCGCGGTGTGGGCGCACCGTCTCG 55 57 1 CGGTGGGGCG 0.931254 -164 ATCCGGTACGCCCGCGCCGCGGAGAGCGCCG 55 118 0 CCCGCCCGCG 0.508129 -103 CAGTGGGGACGCTACTACGGC 55 210 0 CAGTGGGACG 0.323858 -11 CCGGTTGCCGCCGACTCGACGACCGAAAGAG 57 63 1 CCGACCGACG 0.771283 -171 GACGAAGATGCCGAGTTCGGGAACCGCACTA 57 176 0 CCGAGTCGGG 0.582214 -58 CCACACCCACCGGGCTTCACGGCGCTGTCTG 59 32 1 CGGGCTCACG 0.728443 -145 GTGGGTCGTGGTTGGCGACTTGTACAG 60 7 1 CGTGGTGGCG 0.61593 -294 ATAGGTCGCGCCGGGGACGGGCAGCGGGTCG 60 51 1 CCGGGACGGG 0.890232 -250 TGGAGTTCAACGGTGTCGGCGTTTCGCACGG 60 102 0 CGGTGCGGCG 0.949014 -199 GCTGGCTTAGCCCAGCACAGGGCCGTGATAT 60 262 0 CCCAGACAGG 0.259382 -39 GCGGTTCTCCTTGCAGACGCTGGCTTAGC 60 282 0 CCTTGAGACG 0.261595 -19 ACCGGTTGACCCAGGTACGCGACCGGCTCGT 62 35 1 CCAGGACGCG 0.777577 -65 GCAAACCGGACCCGGAAGACGGCAACAGGTC 66 129 1 CCCGGAGACG 0.84377 -37 CAGAGCGAAGCGATGAGGAGGAGCGGCGCAG 67 17 0 CGATGGGAGG 0.314454 -284 CAGAGCGAAGCGATGAGCAGGAGCGGCGCAG 67 70 0 CGATGGCAGG 0.250089 -231 CAGAGCGAAGCGATGAGCAGGAGCGGCGCAG 67 123 0 CGATGGCAGG 0.250089 -178 CAGAGCGAAGCGATGAGCAGGAGCGGCGCAG 67 176 0 CGATGGCAGG 0.250089 -125 CAGAGCGAAGCGATGAGGAGGAGCGGCGCAG 67 229 0 CGATGGGAGG 0.314454 -72 GCTACGGAGGCGATGCGCAGGTCAGTTTATC 68 117 0 CGATGGCAGG 0.250089 -184 GCGGTAGGCACCAGGCGGAGGAACC 70 101 1 CCAGGGGAGG 0.64108 -15 TTACGCAGGTGCGGGGTGGCGGTCGTGGCAG 71 22 0 GCGGGTGGCG 0.371934 -31 GCGCGCCAGCCGCTGCGAGCGTAACGCCACG 72 43 0 CGCTGGAGCG 0.253402 -93 CCCAACAATACCAACCGGGCGGTTGGTCGGC 72 85 0 CCAACGGGCG 0.451761 -51 AAGCTAACGCCTTGGCGGGCGGATTCGGCCT 74 82 0 CTTGGGGGCG 0.356805 -27 GGGATGCGGTCCGGGACGGCAACGGTGGCAC 77 62 1 CCGGGCGGCA 0.281672 -140 GCTAGGTTGGCCGAGCAGACGCAAAAGCCCC 78 18 1 CCGAGAGACG 0.754807 -127 TCTCGTTTGACTGTGACGACGCGGAGCCGAC 79 11 0 CTGTGCGACG 0.571597 -120 GATCACGCGGCCTGCTGGGCGCGTGTCGTAG 81 143 1 CCTGCGGGCG 0.621212 -96 GGCAAGATCGCCCAGACGACGTAGGCTCACC 81 192 0 CCCAGCGACG 0.766323 -47 TCACACCAACCACAGCGGACGCGGCACGGCA 82 40 1 CACAGGGACG 0.123751 -247 GCGGACGCGGCACGGCACGCGGAAGGGACGT 82 54 1 CACGGACGCG 0.329474 -233 AGCACCACCACCGTGCCCAGGCAACGACGCC 82 96 1 CCGTGCCAGG 0.759838 -191 AATCATTTGTCGGGGCGGGCGCGGCCTTATT 82 159 0 CGGGGGGGCG 0.969414 -128 CTAGGCATAGCGGAGCAGGGGTTTTAGTCTA 82 206 1 CGGAGAGGGG 0.682468 -81 CTTAGCGAAGCCAGCCCGACGGTGTGTTTCG 84 66 1 CCAGCCGACG 0.720021 -235 GCGCTGACGCCGCGGCTGACGATTCCGTCAA 84 115 1 CGCGGTGACG 0.78133 -186 TGTACCTTGCCCGGGCTCGCGACGCGATTCG 84 199 0 CCGGGTCGCG 0.939822 -102 TCATACGAATCCGAGTCGGCGCATAGCGTCT 84 229 0 CCGAGCGGCG 0.944525 -72 CCCGCCGGACAGCACGCGTTCGACGG 86 6 1 CGGACGCACG 0.598927 -209 CCGCGCGAATCGGGGTCGACGGCTGGCCGAG 86 42 0 CGGGGCGACG 0.964863 -173 CTCGATCAGGCTGGCGGCAGGCCTGGTCCTA 86 131 0 CTGGCGCAGG 0.269453 -84 TGGGTTTTGGCCCGGTCCGGGCTGGATGTTT 86 183 1 CCCGGCCGGG 0.494663 -32 GGGCTGACTCCGGTCACCAGGAGCGTGCCGC 87 65 1 CGGTCCCAGG 0.524495 -236 GGAGATCTGGCCAGCGGCACGCTCCTGGTGA 87 78 0 CCAGCGCACG 0.565351 -223 CAGATCTCCCCGCGGGCCGCGCGGGATAAGC 87 100 1 CGCGGCCGCG 0.498732 -201 AGAAATACCGCTAGGACCGCGATCAGTATGA 87 140 1 CTAGGCCGCG 0.531603 -161 AGCAGTCCTACCATGGCCGGGTGGGATGGGA 87 185 0 CCATGCCGGG 0.521585 -116 CGTTCTTGCACTGAGTTCACGCTCGGCGTAA 87 230 0 CTGAGTCACG 0.171163 -71 AAAAATCGCACTGGGTACACGCTCGGCGAAA 87 267 1 CTGGGACACG 0.546682 -34 ACGGCAGCCTCGGTCATCGGGGTGATAGCGG 88 59 0 CGGTCTCGGG 0.391896 -21 TTCCGCCCAGCTCGGCGGCCCGTTGCT 92 7 1 CCAGCCGGCG 0.836358 -185 TCAACGCCGACGGAGATGGCG 93 1 0 CGGAGTGGCG 0.805713 -41 GCGTTGACCCCCGTGAGAGGGTGGGTC 93 25 1 CCGTGGAGGG 0.318568 -17 CGACCGTCAACGAGGAGGACGGCCATGTGGT 94 40 1 CGAGGGGACG 0.79427 -197 GAGATGCTGGCCGCGGCGGCGACAGACTTGG 94 88 1 CCGCGCGGCG 0.783246 -149 GCCAGGTCACCGCAGAGGACGCGCATAGGCG 94 144 0 CGCAGGGACG 0.66559 -93 GAACTCGAGACGCGGCACAGGTCGGCACC 94 218 1 CGCGGACAGG 0.570612 -19 CTAGCAGCGACCGGGGGGATGGTCAGGGTAA 95 21 0 CCGGGGGATG 0.15983 -194 CCTGCTACATCCGAGGAAACGGTCGCTGGAT 95 66 1 CCGAGAAACG 0.185896 -149 CGTGTTACAACCGGGAAGACGGCCGGGTTGC 95 110 1 CCGGGAGACG 0.932363 -105 GGGAAGACGGCCGGGTTGCCGTTGGCGTTGG 95 122 1 CCGGGTGCCG 0.356051 -93 AATGCCCCGTGTCGACGACGATGCGGT 102 7 1 CCGTGCGACG 0.917389 -58 GTACCACTCACTGGCAACGGGAGAGGAGCGG 102 42 1 CTGGCACGGG 0.28203 -23 ATAGCCTAATCGGACTACGCGGATCG 103 6 0 CGGACACGCG 0.613931 -295 CAGATGTCTCCCGTGATCAGGTACCAAGCCC 103 107 1 CCGTGTCAGG 0.476668 -194 GCCCGCACAGCCCGGCCCAGGTGCAGGATCG 103 140 0 CCCGGCCAGG 0.516208 -161 CCGGGCTGTGCGGGCAAGGCGTCCATCCAGC 103 156 1 CGGGCAGGCG 0.906992 -145 TTAGATGCGACGTTGCTGGCGCTGGATGGAC 103 176 0 CGTTGTGGCG 0.323041 -125 CATCTAATGCCCCGGTGAGCGAAGGGCGCAT 103 200 1 CCCGGGAGCG 0.447098 -101 TCGCAGCTGGCCGAGCAAGCGCTTGGTTGAT 103 269 1 CCGAGAAGCG 0.317231 -32 ACACCAGTAGCGCTCCCGACGCACCACCTCG 105 24 0 CGCTCCGACG 0.594242 -248 AAACGAACCGCCCGGAAGAGGAGCTGCCCGC 105 77 0 CCCGGAGAGG 0.682265 -195 CTCCCGACAGCCGAGACGACGACATGTGCTG 105 143 1 CCGAGCGACG 0.893295 -129 GGCGGCCGGACCGGGCCGAAGATGGATCC 106 9 0 CCGGGCGAAG 0.212984 -235 TGAAACGGCACCCACAGCACGCTATTAGGTA 106 162 1 CCCACGCACG 0.403619 -82 AAACAGCTATCCGGGCGCAGGCGACAACGCA 106 192 1 CCGGGGCAGG 0.867486 -52 GGAAGTCTAATGGGGGCGGCGAGCCTGGTGC 107 21 0 TGGGGCGGCG 0.257835 -88 GTCGCCGAGTCGGTGGCCACGGCACTT 109 7 0 CGGTGCCACG 0.865979 -79 CGGTGAGGATGCGGGGCCGCGGAGGTTGTCG 109 34 0 GCGGGCCGCG 0.605102 -52 CAGCGATCGTCGAACGGGGCGCTACCGCTAA 111 15 0 CGAACGGGCG 0.415692 -65 GCCCCGCGTACGTTGATGGCGGCCTCGAACA 112 74 1 CGTTGTGGCG 0.323041 -215 CCGACGTGAGCGCGGTAGGGGTTGATGTGCG 112 213 1 CGCGGAGGGG 0.789073 -76 CTCGGCCGGCTCTGCCGGCGGCCACCGGGT 112 269 0 CTCTGCGGCG 0.515286 -20 ACGGTACCGGCCCGCTACGCGGCTTCGCCCG 113 83 0 CCCGCACGCG 0.757162 -115 AAGGGGTGCACCCGCGCCGCGCGATAGCGCG 113 143 0 CCCGCCCGCG 0.508129 -55 GTCCCTAGCTCCCGCCGCGGGCCGTGTGGTT 114 81 1 CCCGCGCGGG 0.458154 -99 AGCTACCTGACGGGCTAGGGGTTGGCCGGGG 114 112 1 CGGGCAGGGG 0.794922 -68 CAATTCGGGACCGACGCGACGGCCTGAAGGT 115 102 0 CCGACCGACG 0.771283 -193 TGCGCTTGATGCGGGTGGACGCCCGAAGTTG 115 167 1 GCGGGGGACG 0.420411 -128 CGAGCACTGCCGGGCCCAGCGCCTGCAGTCT 115 210 1 CGGGCCAGCG 0.609555 -85 AGCACCCCGACTGGGAGGACGTTGAGCTTGA 116 13 0 CTGGGGGACG 0.759443 -76 CCCCGCCGGCCGGTGGTCGGGCGGGTCGGTC 116 45 1 CGGTGTCGGG 0.615344 -44 ACGGGCGCCACGCGGCGAAGTC 117 2 1 CGGGCCCACG 0.846199 -27 CGGGAGCCGGCGAACCCGGCGCCACACATAA 118 31 0 CGAACCGGCG 0.503058 -233 TCGCCGGCTCCCGCGGTCGCGAGTGCATGGC 118 49 1 CCGCGTCGCG 0.441417 -215 AGTTCGCGGCCTGAGCGCGCGCTATCTTCCA 119 161 1 CTGAGGCGCG 0.511542 -46 CGTCAGACTACCGGCCCGGCGTGGAAGATAG 119 182 0 CCGGCCGGCG 0.961969 -25 ***** ***** Masking position 11 Map Score: 149.525 Number of sites scoring better than the average of aligned sites = 58940 Number in coding regions = 55411 Number in noncoding regions = 3529 Number of orfs with sites within 600 bp upstream = 1355 Fraction of orfs with sites within 600 bp upstream = 0.217636 Motif number 6 GTCGAATCGACTCAGCGCTGCCGCCGATCGGC 1 77 0 CTCGCGCTGC 0.910677 -224 GTAAACCCTCGCCAGCGTGGGCCTGTCATTGT 1 228 0 GCCGCGTGGC 0.856895 -73 TGCATCCTGACTCACCGTCGGCGCCACCGGTT 5 22 0 CTCCCGTCGC 0.823672 -65 CCCAGAGTTGGCCAGCGCTATC 6 1 1 CCCGAGTTGC 0.589589 -101 CTGTGGCGAAGCCAGCATCAACGACGTGCCGA 10 22 0 GCCGCATCAC 0.459614 -279 CGAATCCCGTGACCGCAACGGCCAGTGGTATC 10 71 0 GACGCAACGC 0.409697 -230 GGTTTTGCGTCTGCTCGCCGTCGTTTCGTGCC 10 204 0 CTGTCGCCGC 0.30863 -97 TTTTGTCGCCCTCCGTATTGACCCCCTGTCCG 13 34 0 CTCGTATTGC 0.134717 -23 CGGTCCAGTATGCGTCGGCGCAATTTCGC 14 8 1 GTAGCGTCGC 0.289421 -85 CATCGCTGCGCTCGGCATCGTCGCCGGCGGTC 17 61 0 CTCGCATCGC 0.936737 -38 TAGCGTCACCCTCGTCGTTGACCGAACCGCTC 19 59 1 CTCTCGTTGC 0.575188 -36 GGGTAGTATGGCCCTCAACGGCCGATCCCCCG 20 99 1 GCCTCAACGC 0.24415 -43 GTGTTTCCGCCACGGCGTTGGCATGATTCGCA 26 75 1 CACGCGTTGC 0.802813 -77 AAATGGGTGGACCAGCGTTGACACGCTGTGCC 27 151 1 ACCGCGTTGC 0.702776 -124 ACGGTAGGGCGTCAGCGTTTTCGGCAATGAAA 27 234 1 GTCGCGTTTC 0.336736 -41 TGCCTAATCCTCCGCACCAGCAGCAAATTTC 29 10 1 CTCGCACCAC 0.337329 -185 CTTCAAGCCCCGCGGCACCTACCGTTGAC 30 8 1 CCCGCGGCAC 0.574767 -24 CTCGCAAGGCGACCGAGCCGACAGCGTCCTAG 32 113 0 GACGAGCCGC 0.321325 -93 TCCTGTGCAAGCCGGTGGCGGCGGGGAATCCC 32 179 0 GCCGTGGCGC 0.359272 -27 TCGAGACCGTATCCGCAAGGCCGCTACACCGT 34 72 1 ATCGCAAGGC 0.111723 -130 TATCGCTGCGGCGCGCATCGTCGCCCGGATAG 35 22 0 GCGGCATCGC 0.718745 -135 CTCCCGCAGGGTCTTCGTTGACCGATCGGCTG 36 18 1 GTCTCGTTGC 0.560832 -243 GCGAACGCGGGTCGGCGTCTCCAGTTTCTATT 36 64 1 GTCGCGTCTC 0.617829 -197 CCGACCCTGCCTCAGCGTCGCAGCCGTCGTTG 36 120 1 CTCGCGTCGA 0.406159 -141 CAGCGTCGCAGCCGTCGTTGGCGGCGAGCACC 36 132 1 GCCTCGTTGC 0.573764 -129 CGCCGCCTCCTCGCTGACGAATCACGAA 36 243 0 CTCTCGCTGC 0.488666 -18 AAGCGGCCCGGTCTGCGCCGTCCATTGGAGTA 38 67 0 GTCGCGCCGC 0.874123 -131 AGCAACCGTGCTGTGCGACGCCGACTGCCCGG 39 175 0 CTGGCGACGC 0.599589 -126 TTCGTTCCGCATCGTCGCCGGCGCGGCTCATA 39 259 0 ATCTCGCCGC 0.242803 -42 CGGGTTCCCGGCCAGCGTTGTCATCCGGGTAC 41 81 1 GCCGCGTTGC 0.930352 -106 TCGTGGCTCGCCCAGCGGTGCCCGCGGGGGCT 41 125 0 CCCGCGGTGC 0.902405 -62 GACGGCTCCCGGCATGGACAAGACGTGGT 42 34 0 CCCGCATGGC 0.88199 -19 ATCCGGCTCACCCAGAGTTGTCATTTCGCCGC 43 37 0 CCCGAGTTGC 0.589609 -264 CCGACTTCGACTCTGCGTCAACCTGTTTCAGC 44 51 1 CTCGCGTCAC 0.702448 -126 TGCGGTTTGCCGCCGCGCCGCCACATGCCAAG 47 42 1 CGCGCGCCGC 0.822385 -31 GGCCGCACTGCTTTGCATCGCCATTTGTGCCT 48 40 1 CTTGCATCGC 0.109038 -42 GCGAGGCTACCCCGGCGCCGTGATCGCCTGCC 49 14 0 CCCGCGCCGG 0.341515 -26 CGCCGCGGAGCCCGGCACCGCCAGCAGTGCCT 52 14 1 CCCGCACCGC 0.936519 -287 CGTCGGTATTGCGGTCGCCGACCTGGACGTTG 52 121 0 GCGTCGCCGC 0.331295 -180 CCAGCATGTGACGGGCGTGGACTTGATCGGTC 52 181 1 ACGGCGTGGC 0.2776 -120 CTCCCTCGAGGCCTCCGAGGCCTCATTGCCGC 54 92 0 GCCCCGAGGC 0.31979 -27 CCGCGAGCCAACCAGCACCGACTCGAGACGGT 55 79 0 ACCGCACCGC 0.6178 -142 CGGCGCTCTCCGCGGCGCGGGCGTACCGGATA 55 118 1 CGCGCGCGGC 0.50756 -103 CAGTCGCACTCTGCCTGGCCGTCGTCGGAG 56 9 1 CTCGCCTGGC 0.239129 -121 CGGTCGTCGAGTCGGCGGCAACCGGTCCGATC 57 56 0 GTCGCGGCAC 0.473861 -178 GGTTCCCGAACTCGGCATCTTCGTCAGTCCTG 57 182 1 CTCGCATCTC 0.327083 -52 GGGCGAAACCGTCAGCGTTGACGAAGCGTTAG 58 15 1 GTCGCGTTGC 0.859094 -37 CACCGGGCTTCACGGCGCTGTCTGGCCCCAAC 59 39 1 CACGCGCTGC 0.696263 -138 ACCTGCGCCCGTCCGAAGCGCCCGGCTTTTTC 59 86 0 GTCGAAGCGC 0.278609 -91 GCTGCCCGTCCCCGGCGCGACCTATGGAGAAC 60 44 0 CCCGCGCGAC 0.475424 -257 GCTGGGCTAAGCCAGCGTCTGCAAGGAGAACC 60 277 1 GCCGCGTCTC 0.684729 -24 AATTGAGTGTGACTGCGGCGGCCGGCGACGGT 61 35 1 GACGCGGCGC 0.79641 -39 CCGTCCTGTTGTGTGCGGTGCCGCTTGACAGC 62 68 0 GTGGCGGTGC 0.471659 -32 ATGCCCGGCGCGCTGCGGTGGCGCCCTTTGCG 65 40 1 CGCGCGGTGC 0.476438 -185 TTGGTTGGTGCCCTTCGGGGTCCGGCTTGCCC 66 39 0 CCCTCGGGGC 0.48137 -127 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 67 33 1 CTCGCATCGC 0.936765 -268 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 67 86 1 CTCGCATCGC 0.936765 -215 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 67 139 1 CTCGCATCGC 0.936765 -162 CATCGCTTCGCTCTGCATCGTCACCGGCGCGA 67 192 1 CTCGCATCGC 0.936765 -109 CATCGCTTCGCTCTGCATCGTCACCGGCGCGC 67 245 1 CTCGCATCGC 0.936765 -56 ATCGTCACCGGCGCGCATGGTCAGCGACGCTA 67 261 1 GCGGCATGGC 0.48929 -40 ATAAACTGACCTGCGCATCGCCTCCGTAGCTC 68 118 1 CTGGCATCGC 0.667827 -183 TGGGTCGACGCCCAGAGTCGCCTTCAAACTCA 68 262 1 CCCGAGTCGC 0.820711 -39 AAACTCAAACCACGGAGGTGCCCG 68 287 1 CACGAGGTGC 0.1034 -14 TCCCTAGACGCACCGCGGGGGCAATGGTATTC 69 13 1 CACGCGGGGC 0.667232 -70 ATGAGCGCGGGACAGTGTCGGCCTCTCAGCAC 74 24 1 GACGTGTCGC 0.285891 -85 GTGTCGGCCTCTCAGCACGGTCTCTTTGCAGC 74 38 1 CTCGCACGGC 0.807734 -71 AGCCCAGTGTGCCACCGTTGCCGTCCCGGACC 77 69 0 GCCCCGTTGC 0.647054 -133 AGCTGTTGCGGTCTGAGTGGTCGGTAGTTGTC 77 155 1 GTCGAGTGGC 0.545868 -47 GTCGGCTCCGCGTCGTCACAGTCAAAC 79 6 1 CTCGCGTCGC 0.980886 -125 AGGCCGCGTGATCTGAGTGGTCGCCCGGGCTC 81 124 0 ATCGAGTGGC 0.120234 -115 TGACGGGTGAGCCTACGTCGTCTGGGCGATCT 81 187 1 GCCACGTCGC 0.368516 -52 TTGGTGTGACGTGTGCGATGCCGGTGACGAAT 82 17 0 GTGGCGATGC 0.307205 -270 CTTAGCGACGGCCGGCGTCGTTGCCTGGGCAC 82 108 0 GCCGCGTCGT 0.327186 -179 ATTTGTCGGGGCGGGCGCGGCCTTATTCATGA 82 154 0 GCGGCGCGGC 0.682878 -133 CGCAGCATGTCTGCGCAGCGCCAGCCGATCTC 82 241 0 CTGGCAGCGC 0.460777 -46 AATGAGCACCGTCTTCGATGTCGACCTGCTGA 84 31 0 GTCTCGATGC 0.2122 -270 TGGGGCTGCAGCCAGCGCTGACGCCGCGGCTG 84 101 1 GCCGCGCTGC 0.502749 -200 TAATGGGATTGACGGAATCGTCAGCCGCGGCG 84 122 0 GACGAATCGC 0.187805 -179 TTTCATACGAATCCGAGTCGGCGCATAGCGTC 84 230 0 ATCGAGTCGC 0.267146 -71 GAGAGCAGACGGCTGCGCTGCCGCTTTCATAC 84 254 0 GGCGCGCTGC 0.571867 -47 GAAAGCGTTGGTCTGCAACGGCCCGCCGGCGG 86 76 1 GTCGCAACGC 0.745491 -139 GCAACGGCCCGCCGGCGGAGTCTGGCATTTAC 86 90 1 GCCGCGGAGC 0.229013 -125 CCAGCAGTATGTCACCATCGCCGGGATCATCA 87 15 0 GTCCCATCGC 0.55649 -286 CTGGCCAGATCTCCCCGCGGGCCGCGCGGGAT 87 95 1 CTCCCGCGGC 0.521937 -206 GACAAGTCCCCACCGTCGTTTTGCGAC 92 175 0 GTCCCACCGC 0.461365 -17 CGCCATCTCCGTCGGCGTTGACCCCCGTGAGA 93 11 1 GTCGCGTTGC 0.754832 -31 GGAGCGTATCGCCCGCGGCGGCACCGCGTC 94 9 0 GCCGCGGCGC 0.597595 -228 CATGGCCGTCCTCCTCGTTGACGGTCGGAGCG 94 35 0 CTCTCGTTGC 0.57555 -202 CAAGTCTGTCGCCGCCGCGGCCAGCATCTCCG 94 86 0 GCCCCGCGGC 0.416555 -151 CAGGTCAGGGATCAGCGCCGCCTATGCGCGTC 94 126 1 ATCGCGCCGC 0.801072 -111 TATGCGCGTCCTCTGCGGTGACCTGGCTGGTA 94 148 1 CTCGCGGTGC 0.874123 -89 CCGCTGCGCGGACCGCATCGTCGCCGGGCTAG 97 17 0 GACGCATCGC 0.779725 -54 AATGCCCCGTGTCGACGACGATGCGG 102 5 1 CCCGTGTCGC 0.701903 -60 GTGGTACCCCCACCGCATCGTCGTCGACACGG 102 17 0 CACGCATCGC 0.79032 -48 GCATATTCTTCCGCGCGTCGTCATAGCCTAAT 103 27 0 CCGGCGTCGC 0.905256 -274 TCCATCCAGCGCCAGCAACGTCGCATCTAATG 103 177 1 GCCGCAACGC 0.792502 -124 GGATTCCCACCCCATCGAGGTCGCAGCTGGCC 103 249 1 CCCTCGAGGC 0.31532 -52 CTGCAGACCTCCGCGTCGACAATTTCACAT 105 252 0 CTCGCGTCGC 0.979893 -20 GCGCTTCGGTGACTGCGTTGTCGCCTGCGCCC 106 204 0 GACGCGTTGC 0.796598 -40 TGGCCACCGACTCGGCGACAACCTCCGCGGCC 109 19 1 CTCGCGACAC 0.332522 -67 ACCTCCGCGGCCCCGCATCCTCACCGCCCTTA 109 39 1 CCCGCATCCC 0.193172 -47 CACCGCCCTTAACCGCGTCGCCTACCATCGAG 109 60 1 AACGCGTCGC 0.587837 -26 GCAGTTTGCAGCCAGCTTTGACCCGACTGGGT 112 176 0 GCCGCTTTGC 0.360741 -113 GCCACCGGGTGTCGGCTCCGCCAACGGGTTAC 112 247 0 GTCGCTCCGC 0.42355 -42 CTCGGCCGGCTCTGCCGGCGGCCACC 112 273 0 GCCGCTCTGC 0.261894 -16 GTCCCTAGCTCCCGCCGCGGGCCGTGTGGTTA 114 81 1 CCCCCGCGGC 0.531901 -99 TGATCTTGCTGTCAGTATTGCCCCCGCGCTCA 115 18 0 GTCGTATTGC 0.128077 -277 CACTGCCGGGCCCAGCGCCTGCAGTCTGACCT 115 214 1 CCCGCGCCTC 0.636445 -81 TTCACCGCAGGTGCGCATGGCCGACCAGTGTG 118 177 0 GTGGCATGGC 0.415615 -87 ATCGGGTTTTGCCAGCAAGGTCGGTTACCCT 118 243 1 GCCGCAAGGC 0.593593 -21 AGACTACCGGCCCGGCGTGGAAGATAGCGCGC 119 177 0 CCCGCGTGGA 0.256732 -30 *** ****** * Masking position 12 Map Score: 96.1261 Number of sites scoring better than the average of aligned sites = 43068 Number in coding regions = 40831 Number in noncoding regions = 2237 Number of orfs with sites within 600 bp upstream = 1051 Fraction of orfs with sites within 600 bp upstream = 0.168808 Motif number 7 GTCGGCGCCACCGGTTAGCCTGGCGAG 5 5 0 CCGTAGCTGG 0.852878 -82 GCGATCACCGCCGCTGTGCGGCGAGGAGATCCG 6 74 1 CCGTTGCGCG 0.628805 -28 GTGTGGCACATCACTACGCTTCGGGGCCGCCGG 7 22 0 TCATCGCTCG 0.794216 -67 CGCGAAGTCCATTCCGCCACGATATCTACCG 10 280 0 CCATCGCACG 0.393322 -21 CGGTCCAGTATGCGTCGGCGCAATTTC 14 5 1 CCATTGCTCG 0.79017 -88 TTCTCGTTTCGCGTTCGGCTTGGGTAGGGTGAC 17 23 1 GCGTGGCTGG 0.814601 -76 CTCCTCCTCATCGCTGCGCTCGGCATCGTCGCC 17 68 0 TCGTCGCCGG 0.968562 -31 TCGTCGTTGACCGAACCGCTCGGGAGCCAATTC 19 70 1 CCGACGCCGG 0.862027 -25 TGGCGTCTCCCCGGTAGGGTTCGTCCTCACGCG 25 25 0 CCGTGGGTCG 0.812515 -276 CTGGTCGAAGCGGCTCTGGATCGATGACTATAG 25 148 0 CGGTTGGTCG 0.209499 -153 TCCGGTTCAACTGATCCGCTTCGACCACAGGCT 25 179 0 CTGTCGCTCG 0.710494 -122 TTCACAACACCCGGTACGCTCGGTTGG 26 5 0 CCGTCGCCGG 0.985987 -147 TCTCGAAGGATCACTACGCTTGGAGCCC 28 6 0 TCATCGCTGG 0.837096 -72 CCCTGGTGCATCGGTCAGGACGGTGTAGCGGCC 34 90 0 TCGTAGGCGG 0.489842 -112 GCACCAGGGGCCACGTCGCGTCGCGGACAGTCC 34 114 1 CCAGCGCTCG 0.628224 -88 TATCCGGGCGACGATGCGCGCCGCAGCGATACC 35 23 1 ACGTCGCCCG 0.661859 -134 GTCACGGTCACCGGTGCTCGCCGCCAACGACGG 36 143 0 CCGTCTCCCG 0.360344 -118 TACGTGGCACCCACTGCGGACGGGCCGCTACCA 36 178 0 CCATCGGCGG 0.830592 -83 GGAGTAGAGTCCGTTTCGCTACGGGACGCCGGG 38 40 0 CCGTCGCACG 0.794306 -158 TCGAAGCGGCCCGGTCTGCGCCGTCCATTGGAG 38 69 0 CCGTTGCCCG 0.956821 -129 CGAATCCCGGGCAGTCGGCGTCGCACAGCACGG 39 169 1 GCATGGCTCG 0.358493 -132 CCTCATCACTTCGTTCCGCATCGTCGCCGGCGC 39 267 0 TCGTCGCTCG 0.958308 -34 TGCTACATTACCGTTTCGCGCGATCTCCGATAA 44 151 0 CCGTCGCCGA 0.43158 -26 GCGGGCCGCACTGCTTTGCATCGCCATTTGTGC 48 37 1 CTGTTGCTCG 0.499337 -45 ACGTAGACCACCGATGTGAACCGCGTACATTTT 50 64 0 CCGTTGACCG 0.362613 -31 GTGTGCCTATCCACCGTGCATCGCTACCATCTA 54 49 1 CCACTGCTCG 0.233581 -70 CAGTGCACCCTCGCTATACTTCGCCAGCGT 55 8 0 TCGTTACTCG 0.0865173 -213 GACGTTGGGCTCGAACCGCGTGGCGCGCGGTGT 55 40 1 TCGACGCTGG 0.77668 -181 GCTAAGATATCCGGTACGCCCGCGCCGCGGAGA 55 124 0 CCGTCGCCGC 0.67434 -97 CAGTCGCACTCTGCCTGGCCGTCGTCGG 56 6 1 GCATTGCTGG 0.603217 -124 CAATTCCAACCCATTTGGCCTGGCGGCCAAGAT 56 48 1 CCATGGCTGG 0.71001 -82 GCCCGTCTGGCCTCTATGGATGGAGCATGCGGG 57 24 1 CCTTTGGTGG 0.130318 -210 GCCGTGAAGCCCGGTGGGTGTGGCCGGCTGACG 59 22 0 CCGTGGTTGG 0.17271 -155 TTCGTAGGCTTCGCTGCGGTTGGGGCCAGACAG 59 56 0 TCGTCGGTGG 0.923586 -121 AAAAAGCCGGGCGCTTCGGACGGGCGCAGGTTA 59 87 1 GCGTCGGCGG 0.898583 -90 AACGGTGTCGGCGTTTCGCACGGTGCACTGAAA 60 92 0 GCGTCGCCGG 0.957316 -209 GCAGTCACACTCAATTTGCATGGCCGACAACAG 61 18 0 TCATTGCTGG 0.676184 -56 AAGGGCGCCACCGCAGCGCGCCGGGCATCCGAC 65 35 0 CCGACGCCCG 0.863305 -190 CGATATCGGTCTATTCCGCACCGGCATCAACCC 66 79 1 CTATCGCCCG 0.293168 -87 CCTCATCGCTTCGCTCTGCATCGTCACCGGCGC 67 30 1 TCGTTGCTCG 0.9033 -271 GCTCATCGCTTCGCTCTGCATCGTCACCGGCGC 67 83 1 TCGTTGCTCG 0.9033 -218 GCTCATCGCTTCGCTCTGCATCGTCACCGGCGC 67 136 1 TCGTTGCTCG 0.9033 -165 GCTCATCGCTTCGCTCTGCATCGTCACCGGCGC 67 189 1 TCGTTGCTCG 0.9033 -112 CCTCATCGCTTCGCTCTGCATCGTCACCGGCGC 67 242 1 TCGTTGCTCG 0.9033 -59 TGCATCGTCACCGGCGCGCATGGTCAGCGACGC 67 258 1 CCGCCGCTGG 0.855697 -43 TGACACCGCCTCGTTATGGGTCGACGCCCAGAG 68 246 1 TCGTTGGTCG 0.786735 -55 GGCGTTACGCTCGCAGCGGCTGGCGCGCCCCGG 72 46 1 TCGACGGTGG 0.578745 -90 CCGTCTCTGGCCAATGAGCGCGGGACAGTGTCG 74 11 1 CCATAGCCGG 0.495136 -98 GAGGAGCCGGGCGATTCGGTTGGAGCCTGGCCT 77 20 1 GCGTCGGTGG 0.897981 -182 GTCAGCTGTTGCGGTCTGAGTGGTCGGTAGTTG 77 152 1 GCGTTGATGG 0.185688 -50 TCTGCTCACGCCGTAGCGGTTGGTCGAACTGGC 78 79 1 CCGACGGTGG 0.767368 -66 TAGCGGTTGGTCGAACTGGCTGGATTTCGTTCC 78 92 1 TCGATGGTGG 0.358269 -53 GATTTCGTTCCCACTTCGCCGGGTCGTTAGGGT 78 114 1 CCATCGCGGG 0.482362 -31 GTCGGCTCCGCGTCGTCACAGTCAA 79 3 1 CGGTCGCTCG 0.622699 -128 CCTGTTGTTACCAGTGTGCCTGGTGTTTCGTCT 81 41 1 CCATTGCTGG 0.833708 -198 ACCTACGTTGTCGGCACGCTCGGGCAAGATCGC 81 212 0 TCGCCGCCGG 0.713678 -27 CGTGCCGCGTCCGCTGTGGTTGGTGTGACGTGT 82 35 0 CCGTTGGTGG 0.921829 -252 AACCCCTGCTCCGCTATGCCTAGCCCGCAAATG 82 196 0 CCGTTGCTAG 0.57823 -91 GCGAATTCGCTCCGGCACGATCAGCAGGT 84 7 1 TCGTCGGACG 0.388427 -294 AAGACGGTGCTCATTAGGCTTAGCGAAGCCAGC 84 48 1 TCATGGCTAG 0.0448049 -253 CAAGGTACAGACGCTATGCGCCGACTCGGATTC 84 221 1 ACGTTGCCCG 0.443023 -80 TGGGGCCGTACCGGTTGGGCCCCATCTG 85 6 1 CCGACGGTGG 0.765196 -32 GCCGTCGACCCCGATTCGCGCGGGCGGAAAGCG 86 50 1 CCGTCGCCGG 0.985987 -165 ATCTTAGCCCTCGATCAGGCTGGCGGCAGGCCT 86 138 0 TCGTAGGTGG 0.488436 -77 GGGTTTTGGCCCGGTCCGGGCTGGATGTTTGGA 86 184 1 CCGTCGGCTG 0.346635 -31 AGATCTCCCCGCGGGCCGCGCGGGATAAGCCGC 87 101 1 GCGGCGCCGG 0.751973 -200 CAACGGGCCGCCGAGCTGGGCGGAA 92 3 0 CCGGTGGCGG 0.534595 -189 CCTTCTGCTTCCGGTGCGGTCCGGCGGACACTT 92 133 1 CCGTCGGCCG 0.95641 -59 GCCGCCGCGGGCGATACGCTCCGACCGTCAACG 94 19 1 GCGTCGCCCG 0.943985 -218 CGGCGACGATGCGGTCCGCGCAGCGGACCGAGA 97 23 1 GCGTCGCCAG 0.507371 -48 CGGTGGGTTCGATTCGCCCGCTCCTTCTCGG 97 50 0 TCGTCGCCGC 0.463217 -21 AGGTGCAGGATCGAGGGGCTTGGTACCTGATCA 103 120 0 TCGGGGCTGG 0.526055 -181 CGCCGACCTTTCGCGGCGCTTCGGTGACTGCGT 106 218 0 TCGGCGCTCG 0.80744 -26 GCCGGTCAGGGTCGAATCGGGCGG 108 2 1 CCGTAGGTCG 0.632456 -38 CGGGGCGGTGTCGAGTCGCCCGGTTCATCGGTG 112 47 0 TCGGCGCCGG 0.84871 -242 GCGGTAGGGGTTGATGTGCGCGGGTAACCCGTT 112 224 1 TTGTTGCCGG 0.357631 -65 AGGTGCCGATGCGAGCTGCCTGGCCGCTATCGG 113 14 1 GCGGTGCTGG 0.619878 -184 GGCGGTGCGCTTGATGCGGGTGGACGCCCGAAG 115 162 1 TTGTCGGTGG 0.349572 -133 CAGACTGCAGGCGCTGGGCCCGGCAGTGCTCGT 115 209 0 GCGTGGCCGG 0.81688 -86 GCATGGCCGACCAGTGTGGTTGGCCGGAGGTCG 118 162 0 CCATTGGTGG 0.664429 -102 GGTTTCACCGCAGGTGCGCATGGCCGACCAGTG 118 179 0 CAGTCGCTGG 0.446338 -85 *** * *** *** Masking position 8 Map Score: 66.0604 Number of sites scoring better than the average of aligned sites = 14557 Number in coding regions = 13360 Number in noncoding regions = 1197 Number of orfs with sites within 600 bp upstream = 749 Fraction of orfs with sites within 600 bp upstream = 0.120302 Motif number 8 CTGGTGGGCCGGCGATAACGTC 1 3 1 GGTGGGCCGG 0.99313 -298 CTAGCCTATTGGTGGACCTGAAAGCGCATC 1 152 0 GGTGGACCTG 0.597238 -149 TGGCGCCGACGGTGAGTCAGGATGCACTCT 5 28 1 GGTGAGTCAG 0.687951 -59 GAAGCGTAGTGATGTGCCACACAAATCGTA 7 33 1 GATGTGCCAC 0.319541 -56 GGATATATAAGGTCAGTCGGATGCGCTCG 9 10 0 GGTCAGTCGG 0.819718 -85 CGGGCCGTAGGGTGTGCCAG 18 26 1 GGTGTGCCAG 0.815636 -10 GCTAACAACCGGTGGGTCGGTTATTAACGT 22 47 0 GGTGGGTCGG 0.978251 -67 GGGACTCAAGGGTGAGCCTGAGGTACACGC 26 109 1 GGTGAGCCTG 0.691281 -43 AAGTGAAATGGGTGGACCAGCGTTGACACG 27 146 1 GGTGGACCAG 0.82433 -129 AACTGTGGCGGATGGCTCGCAAGGCGACCG 32 130 0 GATGGCTCGC 0.423871 -76 CGTGGCCCCTGGTGCATCGGTCAGGACGGT 34 99 0 GGTGCATCGG 0.54236 -103 CCAACCAACAGGTTGGCCGGGGGCCCTGTT 35 60 1 GGTTGGCCGG 0.93783 -97 TCGCAAGCCTGGAGGCCCGCAGACACAGCA 39 213 1 GGAGGCCCGC 0.51234 -88 CGATGTACCGCCTTACGGGTC 40 96 0 GATGTACCGC 0.484623 -11 GACAACTCTGGGTGAGCCGGATACCTTACT 43 47 1 GGTGAGCCGG 0.982349 -254 AGGTGTACCAGGTGTGACGGCAGTCGGCGG 47 12 0 GGTGTGACGG 0.635725 -61 AGCTCGCATGGGCGGGCCGCACTGCTTTGC 48 26 1 GGCGGGCCGC 0.799964 -56 TGCTTCTCCGGGTCGGTCAGATCGGCTTTC 52 248 1 GGTCGGTCAG 0.600592 -53 AAGGACGAGAGGTGGTCCAGA 54 2 0 GGTGGTCCAG 0.489383 -117 AGATCTCAAAGATGGGCCGCAAGGCTATTT 57 99 0 GATGGGCCGC 0.93882 -135 CGCGACCTATGGAGAACCGGAAGCTGTACA 60 31 0 GGAGAACCGG 0.53813 -270 GCGTCTGCAAGGAGAACCGC 60 291 1 GGAGAACCGC 0.400891 -10 CGCGTACCTGGGTCAACCGGTCACCTGCAG 62 26 0 GGTCAACCGG 0.788396 -74 CAGGGGTTGGCCGGAACCGGGGCT 63 5 1 GGTTGGCCGG 0.93783 -60 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 67 51 0 GATGAGTCGC 0.64764 -250 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 67 104 0 GATGAGTCGC 0.64764 -197 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 67 157 0 GATGAGTCGC 0.64764 -144 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 67 210 0 GATGAGTCGC 0.64764 -91 ACGCGCGAAAGGTCTACCGCCACGTCAATT 68 51 0 GGTCTACCGC 0.571912 -250 CCAACCGGGCGGTTGGTCGGCAGGTAGCCG 72 76 0 GGTTGGTCGG 0.824354 -60 GTCGCACGGCGATGGGCCGCTGTTCAATTC 77 112 1 GATGGGCCGC 0.93882 -90 CCGCATCAAAGGTGGCCCGGGTTAGAACAA 79 44 0 GGTGGCCCGG 0.957041 -87 TGGTGGCGCCGGTGTGTCGGGACACAATTT 81 84 1 GGTGTGTCGG 0.915333 -155 TGATCTGAGTGGTCGCCCGGGCTCGTCGAA 81 118 0 GGTCGCCCGG 0.854011 -121 AGTAAGATAGGGTGGTCCGCTATCACCCCG 88 43 1 GGTGGTCCGC 0.812146 -37 CGCGCGAGGTGGTGCGTCGGGAGCGCTACT 105 20 1 GGTGCGTCGG 0.822964 -252 TGTGGTGATCGGTGAAACGGCACCCACAGC 106 150 1 GGTGAAACGG 0.416101 -94 CCGGTTCATCGGTGGACCGCCGCCTAGCGT 112 31 0 GGTGGACCGC 0.954889 -258 GCGGTCCACCGATGAACCGGGCGACTCGAC 112 41 1 GATGAACCGG 0.723942 -248 CTTGTGATTTGGTCTGTCAGGCACCGGCCC 112 112 1 GGTCTGTCAG 0.265479 -177 ACGGGCTAGGGGTTGGCCGGGGCGGTCTGA 114 121 1 GGTTGGCCGG 0.93783 -59 CGGGCGGGTCGGTCGGCCGGTGTTTCCGTA 116 62 1 GGTCGGCCGG 0.974333 -27 CGACCAGTGTGGTTGGCCGGAGGTCGTTTG 118 158 0 GGTTGGCCGG 0.93783 -106 GGCAGCCCGCGGTCTGCCGCAGTCTGAAGT 119 134 1 GGTCTGCCGC 0.83975 -73 ********** Masking position 8 Map Score: 45.1732 Number of sites scoring better than the average of aligned sites = 7025 Number in coding regions = 6471 Number in noncoding regions = 554 Number of orfs with sites within 600 bp upstream = 447 Fraction of orfs with sites within 600 bp upstream = 0.0717957 Motif number 9 GAGAACCAGAGGGAGCACAGGATGAGCGCC 8 23 1 GGAGCACAGG 0.793226 -20 CGAAACGACGGCGAGCAGACGCAAAACCCCC 10 208 1 GGAGCAGACG 0.855622 -93 ATCTACCGGCGCTAGCAGACGCATAAGTCCC 10 257 0 GTAGCAGACG 0.805028 -44 CACCTTCCAAGCTAACAACCGGTGGGTCGGT 22 56 0 GTAACAACCG 0.141027 -58 CCATGGTCGAGTTAGCACACCAGTGAAGCTG 27 181 1 GTAGCACACC 0.675506 -94 GAATACGGACGGCAGCATCCCGTGCCGCGGC 29 115 1 GCAGCATCCC 0.623471 -80 ATCACGTCCGGCCAGCCGCGGCACGGGATGC 29 129 0 GCAGCCGCGG 0.713204 -66 GCTAGTACGCGACAACACCCGGGGGTAAGCG 32 11 0 GCAACACCCG 0.727246 -195 GCCGCCACCGGCTTGCACAGGACAACC 32 189 1 GTTGCACAGG 0.546433 -17 GTCGTTGGCGGCGAGCACCGGTGACCGTGAC 36 145 1 GGAGCACCGG 0.904585 -116 CCAGGCTTGCGACAGCACAGCAACCGTGCTG 39 194 0 GCAGCACAGC 0.788774 -107 TGTTGGGCATGACTGCACCCAGTAAGGTATC 43 66 0 GCTGCACCCA 0.481837 -235 GCCTGCCAGCATCCCCGCCCAGGCA 45 5 1 GCAGCATCCC 0.623471 -80 CGCCGAATGTGACAGCAACCGGCGATT 46 7 0 GCAGCAACCG 0.956376 -75 GAATGTCGTTGGGCGCAACCGCCATAAAATC 50 16 0 GGCGCAACCG 0.472846 -79 TCTCGTCCTTGCTAGCAGACCTGCCGCGTGT 54 22 1 GTAGCAGACC 0.556908 -97 TCGTCGAGTCGGCGGCAACCGGTCCGATCCC 57 54 0 GCGGCAACCG 0.741493 -180 GGCAGCACACTACCTCTAACG 58 41 0 GCAGCACACT 0.678376 -11 TAGGCTTGACGACAGCAAACCGGACCCGGAA 66 115 1 GCAGCAAACC 0.729756 -51 CCGCTACGGCGTGAGCAGACGCAAAAGCCCC 78 67 0 GGAGCAGACG 0.855622 -78 TTTCGTCTGTGACTGCACTGGTGGCGCCGGT 81 66 1 GCTGCACTGG 0.544518 -173 AGGCTCACCCGTCAGCCGCCGAACGGTCTAC 81 170 0 GCAGCCGCCG 0.864183 -69 CGTCAGCGCTGGCTGCAGCCCCATTCGCGAA 84 93 0 GCTGCAGCCC 0.865342 -208 TGACGGAATCGTCAGCCGCGGCGTCAGCGCT 84 114 0 GCAGCCGCGG 0.713204 -187 ATGGACGGCAGAGAGCAGACGGCTGCGCTGC 84 265 0 GGAGCAGACG 0.855622 -36 CCCGCCGGACAGCACGCGTTCGACGGTA 86 8 1 GCAGCACGCG 0.879888 -207 CGCGTTCGACGGTAGCACTCGGCCAGCCGTC 86 25 1 GTAGCACTCG 0.596531 -190 GAAAGCGTTGGTCTGCAACGGCCCGCCGGCG 86 76 1 GCTGCAACGG 0.794329 -139 AACGGCTCATGCCAGCAGTCCTACCATGGCC 87 198 0 GCAGCAGTCC 0.555002 -103 GTGTCCGCCGGACCGCACCGGAAGCAGAAGG 92 133 0 GCCGCACCGG 0.798654 -59 CGAGTTCTCTGGCAGCACCCGGTGTCGATAA 94 194 0 GCAGCACCCG 0.987273 -43 ATCACTGGCCGTCAGCAGCCGTCCACTAGCT 95 161 0 GCAGCAGCCG 0.979095 -54 ATCGGCCGTGGTTGCACCGGCGCAAAGATG 98 26 0 GTTGCACCGG 0.748576 -20 TCCATCCAGCGCCAGCAACGTCGCATCTAAT 103 177 1 GCAGCAACGT 0.365389 -124 CATGCGTATCGTTTGCAAACGAACCGCCCGG 105 93 0 GTTGCAAACG 0.46558 -179 CTGCGTTGTCGCCTGCGCCCGGATAGCTGTT 106 193 0 GCTGCGCCCG 0.765323 -51 ACCTGCACCTGTCGGCACAGGTA 107 96 1 GCGGCACAGG 0.616127 -13 GGTCAAAGCTGGCTGCAAACTGCGTTCGCCG 112 185 1 GCTGCAAACT 0.21179 -104 CACGCGAAAGGGGTGCACCCGCGCCGCGCGA 113 150 0 GGTGCACCCG 0.916206 -48 TAACAGAGTCGGTAGCGCACGCGAAAGGGGT 113 167 0 GTAGCGCACG 0.389439 -31 GTGTAAGGCTGTGTGCACCCGGCGTCAGACC 114 144 0 GGTGCACCCG 0.916206 -36 AATTAGGTCAGACTGCAGGCGCTGGGCCCGG 115 219 0 GCTGCAGGCG 0.665958 -76 CGGCCGGCGGGGCAGCACCCCGACTGGGAGG 116 26 0 GCAGCACCCC 0.959371 -63 * ********* Masking position 6 Map Score: 25.3336 Number of sites scoring better than the average of aligned sites = 7413 Number in coding regions = 6821 Number in noncoding regions = 592 Number of orfs with sites within 600 bp upstream = 454 Fraction of orfs with sites within 600 bp upstream = 0.07292 Motif number 10 CTGGTGGGCCGGCGATAACGTCGAAAGGTGCGG 1 11 1 GGCGAACGTG 0.865828 -290 GCGGTAAACCCTCGCCAGCGTGGGCCTGTCATT 1 230 0 CTCGCACGTG 0.351277 -71 TCGACACGCCGACGAGAAGGGGGTTTTGCGTCT 10 224 0 GACGAAGGGG 0.773237 -77 ATATCAACCTGGCGCAAGGGATGCGCAAGTGAA 11 11 1 GGCGCAGGAG 0.704139 -44 CTGATGCTAGGCCGCAATCGGTGTCTTGCGGGG 19 15 1 GCCGCACGGG 0.937866 -80 CCGACCCCCACACGATACGGAAGGCAGCTGAA 20 10 0 CACGAAGGAG 0.264501 -132 GCGGATGGCCGGCGAAATGGGTGAGAACAC 22 8 0 GGCGAAGGGG 0.944196 -106 GTCTTTCATTGCCGAAAACGCTGACGCCCTACC 27 236 0 GCCGAACGCG 0.928773 -39 ACCGGTGCTCGCCGCCAACGACGGCTGCGACGC 36 134 0 GCCGCACGAG 0.784573 -127 GCCGAAATGCGGCGAATCCCGGGCAGTCGGCGT 39 157 1 GGCGATCCGG 0.490683 -144 AACGGGTTCCCCCGAGAAGCGCGTTCGAG 40 7 0 CCCGAAGCGG 0.44683 -100 GGACGGTTGTGCCGATTTCGTGGATAGCTGACG 43 254 0 GCCGATCGTG 0.903984 -47 ACGCAGGGGCGCCGTGAGGGGCGTCACGGTCGA 44 15 0 GCCGTAGGGG 0.442923 -162 TTGACGCAGAGTCGAAGTCGGTGTACGCAGGGG 44 39 0 GTCGAGCGGG 0.643809 -138 GGGGATGGTTGGCGATAGCGATGCTGATCATAA 44 105 0 GGCGAACGAG 0.793539 -72 TGTGACCGAGCTCGCATGGGCGGGCCGCACTGC 48 18 1 CTCGCTGGCG 0.390921 -64 CGGGGCAGGCGATCACGGCGCCGGGGTAGC 49 8 1 GGCGACCGGG 0.821502 -32 TTTGCGAAATGTCGAATTGGTTGTCGACCAACC 51 11 0 GTCGATGGTG 0.669525 -39 TATTGCGGTCGCCGACCTGGACGTTGCCATCGA 52 114 0 GCCGACGGAG 0.657176 -187 TTGGCTCGCGGCCTACAACGGCGCTCTCCGCGG 55 100 1 GCCTAACGGG 0.247544 -121 TGGCCGCCAGGCCAAATGGGTTGGAATTGTCTG 56 44 0 GCCAATGGTG 0.112736 -86 CATCCATAGAGGCCAGACGGGCGATCTATCAAG 57 13 0 GGCCAAGGGG 0.24164 -221 TCTTTCGGTCGTCGAGTCGGCGGCAACCGGTCC 57 60 0 GTCGATGGCG 0.715808 -174 TGACGAAGATGCCGAGTTCGGGAACCGCACTAG 57 175 0 GCCGATCGGA 0.222546 -59 GAAAAAGCCGGGCGCTTCGGACGGGCGCAGGTT 59 86 1 GGCGCTGGAG 0.68116 -91 CGTGCGAAACGCCGACACCGTTGAACTCCACCT 60 103 1 GCCGAACGTG 0.912956 -198 ACTCCATCATGCCGCTACCGTCGCCGGCCGCCG 61 50 0 GCCGCACGTG 0.859445 -24 CAGGGGTTGGCCGGAACCGGGGCTTAGGCCGC 63 10 1 GCCGGACGGG 0.796183 -55 ATACGCAAAGGGCGCCACCGCAGCGCGCCGGGC 65 42 0 GGCGCACGCG 0.823857 -183 GCTTCACATACCCGAGGCCGTGGGCAAGCCGGA 66 18 1 CCCGAGCGTG 0.612362 -148 CGCCACGGCGAATTCGGTGCACGCAAGCT 72 7 1 GGCGATCGGG 0.934638 -129 GGAGGAGCCGGGCGATTCGGTTGGAGCCTGGCC 77 19 1 GGCGATGGTG 0.860189 -183 CCATTTCGGGCCCGAAATGGGGGCTTTTGCGTC 78 35 0 CCCGAAGGGG 0.923157 -110 CCATTTCGGGCCCGAAATGGGGGCTTTTGCGTC 78 48 1 CCCGAAGGGG 0.923157 -97 GCCCGAGCGTGCCGACAACGTAGGTGTCG 81 220 1 GCCGAACGTG 0.912956 -19 CGATGCCGGTGACGAATTGGTAG 82 1 0 GACGATGGTG 0.553559 -286 CGCGTGCCGTGCCGCGTCCGCTGTGGTTGGTGT 82 42 0 GCCGCTCGCG 0.872186 -245 CTGACGATTACGCAGTTCTGCTTCC 82 272 0 GACGATCGCG 0.592064 -15 CGATCAGCAGGTCGACATCGAAGACGGTGCTCA 84 28 1 GTCGAACGAG 0.558622 -273 CGCCGGACAGCACGCGTTCGACGGTAGCACTCG 86 13 1 CACGCTCGAG 0.150517 -202 AGCCGTCGACCCCGATTCGCGCGGGCGGAAAGC 86 49 1 CCCGATGCGG 0.420278 -166 TCCTACCATGGCCGGGTGGGATGGGAGTTTGGC 87 178 0 GCCGGTGGAG 0.473306 -123 GCAACGGGCCGCCGAGCTGGGCGGAA 92 4 0 GCCGACGGGG 0.888206 -188 GACGCGGTGCCGCCGCGGGCGATACGCTCCG 94 9 1 GCCGCGGGGG 0.846723 -228 CCGCAGAGGACGCGCATAGGCGGCGCTGATCCC 94 133 0 CGCGCTGGCG 0.660909 -104 CCGTGTCGACGACGATGCGGTGGGGGTACCACT 102 17 1 GACGAGGGTG 0.322478 -48 TTTCCCACCTCCCGACAGCCGAGACGACGACAT 105 135 1 CCCGAACCGG 0.43257 -137 GGTTGTTCGGGTCGACAGCGGAGCGTTGGCGGC 106 34 0 GTCGAACGGG 0.839886 -210 TCCGGGCGCAGGCGACAACGCAGTCACCGAAGC 106 201 1 GGCGAACGCG 0.88917 -43 GCCGGTCAGGGTCGAATCGGGCGGGTACCCTCT 108 11 1 GTCGATGGGG 0.833367 -29 GGAGGTTGTCGCCGAGTCGGTGGCCACGGCACT 109 12 0 GCCGATGGTG 0.90909 -74 AGGATGCGGGGCCGCGGAGGTTGTCGCCGAGTC 109 27 0 GCCGCGGGTG 0.691154 -59 GGCAGCGATCGTCGAACGGGGCGCTACCGCTAA 111 15 0 GTCGACGGGG 0.616806 -65 TCGACACCGCCCCGCGTACGTTGATGGCGGCCT 112 66 1 CCCGCTCGTG 0.705812 -223 TGCACGACATCGCGACTCGGGCGAAGCCGCGTA 113 66 1 CGCGATGGGG 0.869063 -132 CGCGTAGCGGGCCGGTACCGTAGAGGGAGTGCG 113 93 1 GCCGGACGTG 0.612775 -105 ACCCGCGCCGCGCGATAGCGCGGCCATCCCGCC 113 132 0 CGCGAACGCG 0.778114 -66 CGGTAGCGCACGCGAAAGGGGTGCACCCGCGCC 113 156 0 CGCGAAGGGG 0.880887 -42 AACCACACGGCCCGCGGCGGGAGCTAGGGACGG 114 79 0 CCCGCGGGGG 0.706783 -101 TCGCGTCGGTCCCGAATTGGCCGTGAACGACCG 115 114 1 CCCGATGGCG 0.844581 -181 GGGGCAGCACCCCGACTGGGAGGACGTTGAGCT 116 16 0 CCCGATGGAG 0.722485 -73 CCGGTGGTCGGGCGGGTCGGTCGGCCGGTGTTT 116 54 1 GGCGGTGGTG 0.481404 -35 CACGGCGACTTCGCCGCGTGGCGCCC 117 13 0 GGCGATCGCG 0.878073 -16 CGCGGGAGCCGGCGAACCCGGCGCCACACATAA 118 31 0 GGCGACCGGG 0.821502 -233 ATGCCATGCACTCGCGACCGCGGGAGCCGGCGA 118 49 0 CTCGCACGCG 0.402344 -215 GCTGGCAAAACCCGATTTGGCAGCTCGTGGCGG 118 226 0 CCCGATGGCG 0.844581 -38 ***** * *** * Masking position 3 Map Score: 78.3939 Number of sites scoring better than the average of aligned sites = 24109 Number in coding regions = 22909 Number in noncoding regions = 1200 Number of orfs with sites within 600 bp upstream = 733 Fraction of orfs with sites within 600 bp upstream = 0.117732 Motif number 11 AGGAGGTGAGTCCTGGCGGCCACGATATGG 2 89 1 TCCTGGCGGC 0.681149 -20 GTTTCGGATCTCCTCGCCGCACAGCGGCGG 6 81 0 TCCTCGCCGC 0.603971 -21 CTTGACGGACGCCTGGAGGATTGACCAGAA 12 91 1 GCCTGGAGGA 0.719101 -23 TATTAACGTTGGCTAGCGGATGGCCGGCGA 22 26 0 GGCTAGCGGA 0.353805 -88 CTTGGAAGGTGCTTGGCCGAAACGTCCAAC 22 76 1 GCTTGGCCGA 0.684852 -38 CGGGACGGCGGCCTGGCCAAGCTCTGAATC 23 33 1 GCCTGGCCAA 0.500754 -64 CGGCCCGGTAGCCTCGCGGC 24 1 0 GCCTCGCGGC 0.747689 -35 TTCGACCACAGGCTGGTCGAAGCGGCTCTG 25 163 0 GGCTGGTCGA 0.726468 -138 CAGCTCGGCGGCCTGGTGGCCAGGATCGTT 25 256 1 GCCTGGTGGC 0.810859 -45 CGTTGACACCGCCTGGACGACGGTAGGGCG 27 215 1 GCCTGGACGA 0.756604 -60 GGATCACTACGCTTGGAGCCC 28 2 0 GCTTGGAGCC 0.0530334 -76 CCCGTGCCGCGGCTGGCCGGACGTGATCCG 29 133 1 GGCTGGCCGG 0.840846 -62 CTTCAAGCCCCGCGGCACCTACCGTT 30 7 1 GCCCCGCGGC 0.778878 -25 CGGTGTAGCGGCCTTGCGGATACGGTCTCG 34 73 0 GCCTTGCGGA 0.722145 -129 GGGCCACGTCGCGTCGCGGACAGTCCCATG 34 121 1 GCGTCGCGGA 0.574709 -81 TTAGCAGACTGGCTTGCCTCCTGCCGCGAC 34 163 1 GGCTTGCCTC 0.156435 -39 TTGGTTGGTAGCGTCGCCGATCCCAAGGGA 38 150 1 GCGTCGCCGA 0.63059 -48 GCTGTCGCAAGCCTGGAGGCCCGCAGACAC 39 209 1 GCCTGGAGGC 0.776011 -92 GAGGACATGAGGCGCGCCGAGACCCGTAAG 40 76 1 GGCGCGCCGA 0.740849 -31 TCTAGATCGTGGCTCGCCCAGCGGTGCCCG 41 133 0 GGCTCGCCCA 0.790542 -54 GGGCCTCGCCTCCCCTGAAGAG 41 175 0 GCCTCGCCTC 0.596822 -12 GACGGCTCCCGGCATGGACAAGA 42 40 0 GGCTCCCGGC 0.294643 -13 GGACGAGACAGCCCCGCCGAATGTGACAGC 46 22 0 GCCCCGCCGA 0.73258 -60 GCGGTTTGCCGCCGCGCCGCCACATGCCAA 47 43 1 GCCGCGCCGC 0.673869 -30 AGCTCGCATGGGCGGGCCGCACTGCTTTGC 48 26 1 GGCGGGCCGC 0.886859 -56 GGTTGGTCGACAACCAATTC 51 1 1 GGTTGGTCGA 0.142086 -49 CGCCAGCAGTGCCTCGCGGATGCCCTGATC 52 32 1 GCCTCGCGGA 0.929416 -269 GGCCTCGGAGGCCTCGAGGGAGAACAG 54 102 1 GCCTCGAGGG 0.217547 -17 GGTGCTGGTTGGCTCGCGGCCTACAACGGC 55 92 1 GGCTCGCGGC 0.890728 -129 GTCGCACTCTGCCTGGCCGTCGTCGGAGCC 56 13 1 GCCTGGCCGT 0.733078 -117 AACCCATTTGGCCTGGCGGCCAAGATGACA 56 55 1 GCCTGGCGGC 0.97216 -75 CCATCAAATAGCCTTGCGGCCCATCTTTGA 57 94 1 GCCTTGCGGC 0.812704 -140 CCCGACCAGAGCCTGGAGGACATCAGGACC 57 140 0 GCCTGGAGGA 0.719101 -94 TCACGGCGCTGTCTGGCCCCAACCGCAGCG 59 48 1 GTCTGGCCCC 0.221729 -129 CACTCAATTTGCATGGCCGACAACAGTTTG 61 14 0 GCATGGCCGA 0.575302 -60 TTCGGGGTCCGGCTTGCCCACGGCCTCGGG 66 28 0 GGCTTGCCCA 0.356607 -138 AACCCCTCTAGGCTTGACGACAGCAAACCG 66 107 1 GGCTTGACGA 0.192792 -59 GGTTCCTCCGCCTGGTGCCTACCGCATGT 70 97 0 GCCTGGTGCC 0.472353 -19 CGCTCGCAGCGGCTGGCGCGCCCCGGCTAC 72 53 1 GGCTGGCGCG 0.475847 -83 GGCGGATTCGGCCTCGTGGAGCAACGGCTG 74 66 0 GCCTCGTGGA 0.609623 -43 CTAACGCCTTGGCGGGCGGATTCGGCCTCG 74 80 0 GGCGGGCGGA 0.796098 -29 TTCGGTTGGAGCCTGGCCTCAATGTAGGGG 77 34 1 GCCTGGCCTC 0.707202 -168 AGTTGGGCTAGGTTGGCCGAGCAGACGCAA 78 12 1 GGTTGGCCGA 0.649776 -133 ACGCCGTAGCGGTTGGTCGAACTGGCTGGA 78 86 1 GGTTGGTCGA 0.142086 -59 TGGTCGCCCGGGCTCGTCGAATATGAAATT 81 109 0 GGCTCGTCGA 0.619497 -130 GACGCGGCACGGCACGCGGAAGGGACGTTA 82 57 1 GGCACGCGGA 0.3945 -230 GGGGGAGATCGGCTGGCGCTGCGCAGACAT 82 237 1 GGCTGGCGCT 0.287199 -50 ACCTTGCCCGGGCTCGCGACGCGATTCGTT 84 197 0 GGCTCGCGAC 0.421755 -104 CGGGGTCGACGGCTGGCCGAGTGCTACCGT 86 33 0 GGCTGGCCGA 0.967476 -182 CCCTCGATCAGGCTGGCGGCAGGCCTGGTC 86 134 0 GGCTGGCGGC 0.974853 -81 GGTGACATACTGCTGGCCGCCTGCGTCCGG 87 31 1 TGCTGGCCGC 0.690491 -270 AACCCGGAGATGCTGGCCGCGGCGGCGACA 94 82 1 TGCTGGCCGC 0.690491 -155 ACGTGTTCTAGCCTGGCCCC 100 1 0 GCCTGGCCCC 0.923348 -111 TGCCCGCACAGCCCGGCCCAGGTGCAGGAT 103 142 0 GCCCGGCCCA 0.480721 -159 TCGAGGTCGCAGCTGGCCGAGCAAGCGCTT 103 263 1 AGCTGGCCGA 0.287538 -38 CACCGCACCAGGCTCGCCGCCCCCATTAGA 107 17 1 GGCTCGCCGC 0.961706 -92 GCAGGTGTTGGCGTGGCGGCGCGGCACCAG 107 72 0 GCGTGGCGGC 0.788454 -37 CTATGCAATAGGGTCGCGGC 111 70 1 GGGTCGCGGC 0.615158 -10 GATGCGAGCTGCCTGGCCGCTATCGGATGA 113 21 1 GCCTGGCCGC 0.982585 -177 GCAACGGGCGGGATGGCCGCGCTATCGCGC 113 126 1 GGATGGCCGC 0.660279 -72 CTAACCACACGGCCCGCGGCGGGAGCTAGG 114 84 0 GGCCCGCGGC 0.762506 -96 CACGAGCACTGCCGGGCCCAGCGCCTGCAG 115 208 1 GCCGGGCCCA 0.534022 -87 ACGGGCGCCACGCGGCGAAGTCGCCG 117 7 1 GCCACGCGGC 0.453883 -22 CCGCAGGTGCGCATGGCCGACCAGTGTGGT 118 175 0 GCATGGCCGA 0.575302 -89 ********** Masking position 6 Map Score: 75.7277 Number of sites scoring better than the average of aligned sites = 11231 Number in coding regions = 10438 Number in noncoding regions = 793 Number of orfs with sites within 600 bp upstream = 555 Fraction of orfs with sites within 600 bp upstream = 0.0891423 Motif number 12 AGGATGCACTCTCGAAGGTGTGCTGCAGCG 5 46 1 CTCGAAGGTG 0.738472 -41 GAACGCGAAACGAGAACGTGTTCCATTA 17 9 0 CGAGAACGTG 0.885466 -90 GGTGTGCTAACTCGACCATGGCACAGCGTG 27 172 0 CTCGACCATG 0.698994 -103 CTGGCAAGACTAGAACGTGTTGCAATTTG 28 59 0 CTAGAACGTG 0.955135 -19 TCCATCATGGCTAGTACGCGACAACACCCG 32 21 0 CTAGTACGCG 0.660235 -185 CTAACGTTAGCGCGAACGCGGGTCGGCGTC 36 53 1 CGCGAACGCG 0.789956 -208 CTCGAACGCGCTTCTCGGGG 40 1 1 CTCGAACGCG 0.971522 -106 GACCAGCAATCTAGATCGTGGCTCGCCCAG 41 142 0 CTAGATCGTG 0.799764 -45 CAACTCGACCGTGACGCCCCTCA 44 4 1 CTCGACCGTG 0.941921 -173 GGTAACTGGACTCGATCACGTCGGTATTGC 52 141 0 CTCGATCACG 0.538871 -160 CCCGGCACGACTCGAACGTGCGACCTAGGG 68 177 0 CTCGAACGTG 0.974263 -124 GAGTGCTACCGTCGAACGCGTGCTGTCCGG 86 15 0 GTCGAACGCG 0.762583 -200 GATTCAGAGACTAGAACGTGTTACAACCGG 95 94 1 CTAGAACGTG 0.955135 -121 CAAACTAGAACGTGTTACATTTCT 99 60 0 CTAGAACGTG 0.955135 -14 GGGGCCAGGCTAGAACACGTTTCATTACT 100 10 1 CTAGAACACG 0.77596 -102 TTCTTGCCCACTAGAACGTGTTCTAATAGT 105 210 0 CTAGAACGTG 0.955135 -62 GCCATGCACTCGCGACCGCGGGAGCCGGCG 118 50 0 CGCGACCGCG 0.8265 -214 ********** Masking position 4 Map Score: 20.4445 Number of sites scoring better than the average of aligned sites = 617 Number in coding regions = 560 Number in noncoding regions = 57 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 13 AGCGAATAGTCGAGCTCGCGCTGCCACTTG 10 157 1 CGAGCTCGCG 0.479463 -144 GTGGCGGAATGGACTTCGCG 10 291 1 GGACTTCGCG 0.481498 -10 TGCCCATGGAGCACCTCGGGATG 12 4 0 GCACCTCGGG 0.953396 -110 GCTCCCATTGGCTCCCCGGGACGGCGGCCT 23 17 1 GCTCCCCGGG 0.533459 -80 CGGTAGGGTTCGTCCTCACGCGGCGGCTTG 25 17 0 CGTCCTCACG 0.534238 -284 CTCCCCATTTCCTCCTCGCGTGTACCTCAG 26 126 0 CCTCCTCGCG 0.963054 -26 GAGCCGACAGCGTCCTAGCGGGAGACGCTT 32 101 0 CGTCCTAGCG 0.763794 -105 ACGCCCTAGCGCCGTTGACCT 33 2 1 CGCCCTAGCG 0.784389 -97 GCACCAGGGGCCACGTCGCGTCGCGGACAG 34 114 1 CCACGTCGCG 0.741448 -88 CGCCGCCTCCTCGCTGACGAATCAC 36 246 0 CCTCCTCGCT 0.505019 -15 GGCGCTGACCTCCTGGGGCCGGCAAAGC 38 9 1 CCTCCTGGGG 0.498462 -189 CATACGCGCCGCTCCTCGCTTGCTGTGTCT 39 233 0 GCTCCTCGCT 0.426739 -68 CTCGAACGCGCTTCTCGGGGGAACCCGTT 40 10 1 GCTTCTCGGG 0.29684 -97 CGCCTCATGTCCTCCTCGGGCGAATGCTAT 40 60 0 CCTCCTCGGG 0.963054 -47 TAAACCTTAGCCCCCGCGGGCACCGCTGGG 41 117 1 CCCCCGCGGG 0.87668 -70 CGACCGTGACGCCCCTCACGGCGCCCCTGC 44 16 1 GCCCCTCACG 0.48528 -161 TCTGGACCACCTCTCGTCCTTGCTAG 54 7 1 CCACCTCTCG 0.552211 -112 CGCGTATCCAGGACCTCGGGTCTG 56 116 1 GGACCTCGGG 0.953396 -14 CCGCAAGGAGGCTCCTCGCGAGATTCGTCA 59 135 0 GCTCCTCGCG 0.95007 -42 GTCCCCGGCGCGACCTATGGAGAACCGGAA 60 39 0 CGACCTATGG 0.132633 -262 GGCTTGCCCACGGCCTCGGGTATGTGAAGC 66 18 0 CGGCCTCGGG 0.874994 -148 GTTGGTTGGTGCCCTTCGGGGTCCGGCTTG 66 42 0 GCCCTTCGGG 0.493166 -124 CTCGAACGTGCGACCTAGGGATTAGAAGGC 68 167 0 CGACCTAGGG 0.776613 -134 GTCCCTAGACGCACCGCGGGGGCAATGGTA 69 12 1 GCACCGCGGG 0.842805 -71 AATCCCATTAGGCCCTCGGGTGTGGCCCGT 84 144 1 GGCCCTCGGG 0.955426 -157 CAACGCTTTCCGCCCGCGCGAATCGGGGTC 86 56 0 CGCCCGCGCG 0.87668 -159 TATCCCGCGCGGCCCGCGGGGAGATCTGGC 87 98 0 GGCCCGCGGG 0.848853 -203 TACTGATCGCGGTCCTAGCGGTATTTCTTG 87 138 0 GGTCCTAGCG 0.702327 -163 CGGCAGCCTCGGTCATCGGGGTGATAGCGG 88 59 0 GGTCATCGGG 0.463444 -21 ACCTCTTTCTGCCCGTCGGGTGTGAGCTTG 99 27 1 GCCCGTCGGG 0.686753 -47 TCCCGACGCACCACCTCGCGCGGTCATGAA 105 12 0 CCACCTCGCG 0.965545 -260 TGTAGATTTCCCACCTCCCGACAGCCGAGA 105 129 1 CCACCTCCCG 0.656072 -143 TAGCGTCCATCGTCCTCGGGGAAATA 112 7 0 CGTCCTCGGG 0.963054 -282 CGGTGGACCGCCGCCTAGCGTCCATCGTCC 112 22 0 CCGCCTAGCG 0.464696 -267 CAGACGTGCACGACATCGCGACTCGGGCGA 113 60 1 CGACATCGCG 0.55997 -138 GCCACCTTCAGGCCGTCGCGTCGGTCCCGA 115 99 1 GGCCGTCGCG 0.686753 -196 CATGCACTCGCGACCGCGGGAGCCGGCGAA 118 48 0 CGACCGCGGG 0.879846 -216 CGCGACCAAACGACCTCCGGCCAACCACAC 118 152 1 CGACCTCCGG 0.656072 -112 ********** Masking position 10 Map Score: 33.9116 Number of sites scoring better than the average of aligned sites = 4172 Number in coding regions = 3833 Number in noncoding regions = 339 Number of orfs with sites within 600 bp upstream = 305 Fraction of orfs with sites within 600 bp upstream = 0.0489881 Motif number 14 AACGCCACATGCTGGCAGGCTAT 13 3 1 CGCACATGCT 0.977921 -54 TGCTCGCCTTCCCATGCTGTTGGACGTT 22 96 0 CTCCCATGCT 0.896905 -18 AGTCCCGGTGCGAATCATGCCAACGCCGTGG 26 84 0 CGATCATGCC 0.747179 -68 GGTCTCGGCGCGCCTCATGTCCTCCTCGGGC 40 69 0 CGCTCATGTC 0.761781 -38 TCAGCCGCTTCGTCACATGCTGTATCGGACT 43 113 0 CGCACATGCT 0.977921 -188 GTCCTCCCGCCGACCCATGCTGGAATTCATA 46 59 0 CGCCCATGCT 0.979586 -23 GCCGCCGCGCCGCCACATGCCAAGCTACTCG 47 50 1 CGCACATGCC 0.986126 -23 AGTCCACGCCCGTCACATGCTGGCTACCTCG 52 173 0 CGCACATGCT 0.977921 -128 AGACCCGTGGCGGCCCATGGCCGCAAGGAGG 59 154 0 CGCCCATGGC 0.882597 -23 TCTCCGTACACGACTCATGCTGGACACTTCG 70 16 1 CGCTCATGCT 0.968003 -100 GGCGTAATAACGGCTCATGCCAGCAGTCCTA 87 206 0 CGCTCATGCC 0.979819 -95 CGACTGGGTCCTGCACATGCTCTTAGTTTTC 112 154 0 CTCACATGCT 0.889258 -135 CACTAGCGGTCGACACATGCCCAGACACTGC 115 62 1 CGCACATGCC 0.986126 -233 AGACCGCGGGCTGCCCATGCCACGACAAACC 119 118 0 CTCCCATGCC 0.933161 -89 ** ******** Masking position 7 Map Score: 22.5187 Number of sites scoring better than the average of aligned sites = 113 Number in coding regions = 93 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 15 GCGCCGCTCCTCCTCATCGCTGCGCTCGGC 17 77 0 TCCTCATCGC 0.966865 -22 CCGGTAGGGTTCGTCCTCACGCGGCGGCTT 25 18 0 TCGTCCTCAC 0.847624 -283 TCTCCCCATTTCCTCCTCGCGTGTACCTCA 26 127 0 TCCTCCTCGC 0.983847 -25 TGCCTAATCCTCCGCACCAGCAGCAAA 29 8 1 TCCTCCGCAC 0.709266 -187 CGAGCCGACAGCGTCCTAGCGGGAGACGCT 32 102 0 GCGTCCTAGC 0.664057 -104 CGCCGCCTCCTCGCTGACGAATCA 36 247 0 GCCTCCTCGC 0.977683 -14 AGCCTATATAGCCTCATCGC 37 1 0 GCCTCATCGC 0.954519 -26 GCGCCGCTCCTCCTCATCACTTCGTTCCGC 39 281 0 TCCTCATCAC 0.874534 -20 GCGCCTCATGTCCTCCTCGGGCGAATGCTA 40 61 0 TCCTCCTCGG 0.868535 -46 ACTTGATCGGTCGTCATCACACAACGGTAA 52 201 1 TCGTCATCAC 0.727147 -100 TATGACTACCTCCTCAGCGCACCCGAAAGC 52 272 0 TCCTCAGCGC 0.830297 -29 GGACCACCTCTCGTCCTTGCTAGCAGACCT 54 14 1 TCGTCCTTGC 0.733209 -105 GGCCTCCGAGGCCTCATTGCCGCGTCGGGT 54 85 0 GCCTCATTGC 0.712385 -34 CTCGCGAGGAGCCTCCTTGCGGCCATGGGC 59 143 1 GCCTCCTTGC 0.837927 -34 GCGCCGCTCCTCCTCATCGCTTCGCTCTGC 67 19 1 TCCTCATCGC 0.966865 -282 GCGCCGCTCCTCCTCATCGCTTCGCTCTGC 67 231 1 TCCTCATCGC 0.966865 -70 ACCGCAGAGCCTCCTAGCATTTCAGTTA 69 65 0 GCCTCCTAGC 0.837927 -18 ATCGCCCGGCTCCTCCTCACCCCG 77 5 0 TCCTCCTCAC 0.935689 -197 CACATGGCCGTCCTCCTCGTTGACGGTCGG 94 39 0 TCCTCCTCGT 0.707784 -198 CTTCCGCGCGTCGTCATAGCCTAATCGGAC 103 22 0 TCGTCATAGC 0.568338 -279 CCGCGGCCCCGCATCCTCACCGCCCTTAAC 109 43 1 GCATCCTCAC 0.34166 -43 CTAGCGTCCATCGTCCTCGGGGAAATA 112 8 0 TCGTCCTCGG 0.716387 -281 GCTTCCCTCATCCTCATCTCAACGCATCCA 115 271 0 TCCTCATCTC 0.591349 -24 ********** Masking position 4 Map Score: 29.8115 Number of sites scoring better than the average of aligned sites = 735 Number in coding regions = 604 Number in noncoding regions = 131 Number of orfs with sites within 600 bp upstream = 118 Fraction of orfs with sites within 600 bp upstream = 0.0189528