AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00130_mtub_reg_100.orf -o00130_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: cobL 67 cobL Input sequences: #1 Rv0012 93 hypothetical protein Rv0012 #2 pabA 36 pabA #3 Rv0187 300 hypothetical protein Rv0187 #4 menE 68 menE #5 Rv0543c 59 hypothetical protein Rv0543c #6 pitA 119 pitA #7 menB 271 menB #8 Rv0552 77 hypothetical protein Rv0552 #9 menD 42 menD #10 Rv0557 61 hypothetical protein Rv0557 #11 Rv0767c 201 hypothetical protein Rv0767c #12 pabB 115 pabB #13 Rv1009 207 hypothetical protein Rv1009 #14 trpE 140 trpE #15 cobG 224 cobG #16 Rv2073c 29 hypothetical protein Rv2073c #17 sucB 263 sucB #18 lipB 52 lipB #19 dgt 68 dgt #20 mbtB 98 mbtB #21 trpE2 300 trpE2 #22 Rv2689c 173 hypothetical protein Rv2689c #23 Rv3083 77 hypothetical protein Rv3083 #24 adhD 30 adhD #25 Rv3087 37 hypothetical protein Rv3087 #26 nuoA 300 nuoA #27 nuoH 115 nuoH #28 entD 153 entD #29 rmlD 75 rmlD #30 phyA 28 phyA #31 idsA 22 idsA #32 mhpE 60 mhpE #33 Rv3536c 72 hypothetical protein Rv3536c Motif number 1 TCTATCGTTGCACCCCGGGCCATTCGTCGT 1 48 0 CACCCCGGGC 0.718792 -46 ACCGCCTGACCCTGCCGGCAGTCGT 2 6 0 CCTGCCGGCA 0.744112 -31 CAATTCGTCGCCGCAGGTGCAGCGG 3 6 1 CGTCGCCGCA 0.974494 -295 CGGTAGGCGTCACCGGCGCCAGCACAGTGG 3 33 1 CACCGGCGCC 0.856967 -268 CCACAGCCCTCGTGGCTGCAGGTCAGCAAG 3 90 1 CGTGGCTGCA 0.818289 -211 CCGTGTCGGGGATCCCCGAGGAATCCCAGG 3 158 1 GATCCCCGAG 0.768247 -143 TAAACCCCCAGGCCGGTGGGCGGTTGCCTG 3 248 1 GGCCGGTGGG 0.843204 -53 TGGGCGGTTGCCTGCTGGCGCGCGACGGTC 3 264 1 CCTGCTGGCG 0.798665 -37 CGCGACCACCGACCGTCGCGCGCCAGCAGG 3 274 0 GACCGTCGCG 0.939838 -27 CGCGACGGTCGGTGGTCGCGCTAGCGT 3 284 1 GGTGGTCGCG 0.96385 -17 CCATCCTGCGTGCGCTGCACGTCC 4 5 1 CCTGCGTGCG 0.776861 -64 GTGCGCTGCACGTCCCGGCCGGTTCTGCTA 4 20 1 CGTCCCGGCC 0.905197 -49 CCGCGCTGCTGCTGCCTGCCCTGCAACGA 4 50 1 GCTGCCTGCC 0.811167 -19 AGTCGCAGATGGCCGCGACATAGGGTT 5 8 1 GATGGCCGCG 0.97535 -52 TTCCCGTCGGGGCCGTCGCCAAACCCTATG 5 29 0 GGCCGTCGCC 0.562106 -31 GCCTGATTCTGCTGGTCGGGATATTGCGTT 6 97 0 GCTGGTCGGG 0.843837 -23 TTTCTCCAAGCCCCGCTGGAC 7 2 0 CCCCGCTGGA 0.480838 -270 CTTGGAGAAAGGTGGGCGCGCCGCCCTGTT 7 22 1 GGTGGGCGCG 0.915296 -250 CGATCATGGCGCTGCTCGCAGTTCATCACC 7 109 0 GCTGCTCGCA 0.721242 -163 TTCTGTGGAGGGTCACCGCGTACTCGATCA 7 133 0 GGTCACCGCG 0.948387 -139 CACAGAAAGCCGCCCGGGCGCCAACTCACG 7 156 1 CGCCCGGGCG 0.499348 -116 ATGTGACCAAGGCCCCGGGCACCATACCGT 7 191 1 GGCCCCGGGC 0.502157 -81 CAGTAATCATGGCCGCTGGGCGTCAGCCGG 7 221 0 GGCCGCTGGG 0.891174 -51 TCCGTTCACCCATGCCTGCCACAGTAATCA 7 242 0 CATGCCTGCC 0.736012 -30 GAGATTACGAGGGCACGGCAGATCCAAATT 8 34 0 GGGCACGGCA 0.474849 -44 GACCGTATGGCCGGGCCGCGC 9 2 0 CCGGGCCGCG 0.896734 -41 ACTGTCAGCGCCGGCTGTCGAAATG 10 47 0 CAGCGCCGGC 0.829451 -15 GACGGTGTAGCGGCCTTGCGGATACGGTCT 11 75 0 CGGCCTTGCG 0.787075 -127 GGCCACGTCGCGTCGCGGACAGTCCCATGT 11 122 1 CGTCGCGGAC 0.718127 -80 GCTATCGGATGGTCGCGGCAGGAGGCAAGC 11 174 0 GGTCGCGGCA 0.946484 -28 GCCGTTTCTCGCTGACCGCGAGACGTTGAC 12 35 0 GCTGACCGCG 0.845135 -81 ATTGGCATTGGCTGCTCGCACAGCAACACC 12 65 1 GCTGCTCGCA 0.721242 -51 CTCCGGTCTCCGTCCCGGGGGGTGTTGCTG 12 85 0 CGTCCCGGGG 0.928508 -31 TCCGTGACCGGCTCCGGTCTCC 12 104 0 CGTGACCGGC 0.688723 -12 GTTATGGGCCGCTCGGCGCGC 13 2 0 GCTCGGCGCG 0.967198 -206 GAGCAACTCCGGCGCGCGGGTGTTATGGGC 13 23 0 GGCGCGCGGG 0.509 -185 CAGCCGCGAAGCGGCGCGCAAGGAGTCGGG 14 34 0 GCGGCGCGCA 0.674802 -107 CGCGCCGCTTCGCGGCTGGGGGTGCCCCCA 14 46 1 CGCGGCTGGG 0.748367 -95 GGGGTGCCCCCATGCGCGCCGTTTGCGCGG 14 64 1 CATGCGCGCC 0.88448 -77 CGACGACGATGCACGCCGCGCAAACGGCGC 14 79 0 GCACGCCGCG 0.664455 -62 CGGCGTGCATCGTCGTCGGGCTACGCCCGG 14 91 1 CGTCGTCGGG 0.946889 -50 TACGCCGATCGGCCCGGGCGTAGCCCGACG 14 104 0 GGCCCGGGCG 0.507645 -37 GGGCGCGACAGGTGGCCGGAGTGGG 15 6 0 GGTGGCCGGA 0.906753 -219 TGTGCCGCGGCGTCCGCGCGGTCGCTCGTG 15 67 1 CGTCCGCGCG 0.957995 -158 CGCGGTCGCTCGTGCCCGACTCGTGGAGCG 15 83 1 CGTGCCCGAC 0.758186 -142 GCGGGTTTGAGGGCGCCGAGTCGCTCCACG 15 104 0 GGGCGCCGAG 0.863918 -121 CGATTGCGCGCATCGTGGCGGGTTTGAGGG 15 121 0 CATCGTGGCG 0.865995 -104 CGAGGATCAGGGTCAGGGCGTTTTCGATTG 15 145 0 GGTCAGGGCG 0.817867 -80 CCCTGACCCTGATCCTCGGCCTCCCGACGG 15 157 1 GATCCTCGGC 0.744626 -68 GACGGGACCTGAGCGCGGCGAGGCGGCGAC 15 182 1 GAGCGCGGCG 0.920826 -43 CGGGAGAATGGGTCGCCGCCTCGCCGCGCT 15 193 0 GGTCGCCGCC 0.947493 -32 CGCACCTCCGCCCACCGGGACTTGCTGTT 17 10 1 GCCCACCGGG 0.532715 -254 CCGTAGCAAGGACGGCCGACTGCACCGATG 17 57 1 GACGGCCGAC 0.563057 -207 TCGGCGGGGACATCGGTGCAGTCGGCCGTC 17 67 0 CATCGGTGCA 0.537065 -197 GTTGCCGACACCTCGGCGGGGACATCGGTG 17 79 0 CCTCGGCGGG 0.922601 -185 GCGAGTTGGTGGCCCCGGCGGCCGTTGCCG 17 102 0 GGCCCCGGCG 0.508497 -162 CACACATCCAGGGCGCGGCGAGTTGGTGGC 17 119 0 GGGCGCGGCG 0.916556 -145 GATGTGTGTCGCTCCGGGCGCAGTGACAGG 17 141 1 GCTCCGGGCG 0.923344 -123 TGGCCTATCACACGGTCGCGCACCGGGTGC 17 198 0 CACGGTCGCG 0.875415 -66 ATCGATCGTCGGTCGGCGCAGGTCCACCTC 17 228 0 GGTCGGCGCA 0.959351 -36 GCCGCCAGCGCACGGCTGGGCAGACGGGGT 18 16 0 CACGGCTGGG 0.67196 -37 CCAGCCGTGCGCTGGCGGCCGAGTAGCCTA 18 27 1 GCTGGCGGCC 0.861992 -26 CTGCCAGGGTGGTCGCCGCACGCCCGTATC 19 38 0 GGTCGCCGCA 0.978271 -31 CGCCGGTTACCATGCCCGCCAACTCACGCA 21 73 0 CATGCCCGCC 0.936022 -228 GGTCGCGGCCGGTGCTCGCCGGTTACCATG 21 89 0 GGTGCTCGCC 0.937368 -212 CGCAGGCAGAGGCGGTCGCGGCCGGTGCTC 21 102 0 GGCGGTCGCG 0.528156 -199 ACGGCCGGACGGTCCGCGGACTGCGTTTCG 21 147 0 GGTCCGCGGA 0.866636 -154 ACCGTCCGGCCGTGGGTGGGTCCTGTCGCC 21 164 1 CGTGGGTGGG 0.795428 -137 TGGCACCAGCCGGGGCGGCGACAGGACCCA 21 180 0 CGGGGCGGCG 0.770204 -121 GGAAGAAAATGCTCGTCGGGAGCAAATGGC 21 206 0 GCTCGTCGGG 0.898338 -95 GCATGTCCAACGTGCTCGACTGGAAGAAAA 21 227 0 CGTGCTCGAC 0.482493 -74 ATGGGTCGCAGCCCCCCGGGGTCGTCGCAT 21 253 0 GCCCCCCGGG 0.597944 -48 TCTGCATCGTCGCCGGCGCGGGTCAATCGA 22 21 0 CGCCGGCGCG 0.504793 -153 CGATGGGGAGGAGCGGCGCCAGTGACCCGC 22 57 1 GAGCGGCGCC 0.894874 -117 TCTGCATCGTCGCCGGCGCGGGTCACTGGC 22 74 0 CGCCGGCGCG 0.504793 -100 CGATGGGGAGGAGCGGCGCCAGTGACCCGC 22 110 1 GAGCGGCGCC 0.894874 -64 TCTGCATCGTCGCCGGCGCGGGTCACTGGC 22 127 0 CGCCGGCGCG 0.504793 -47 CGATGGGGAGGAGCGGCGCCA 22 163 1 GAGCGGCGCC 0.894874 -11 CATGGTGGAGGACCCCCGCCACGTATTGAC 23 50 0 GACCCCCGCC 0.929209 -28 GGGGATTGCGCGTCCCGGCGAATTGTATGA 26 67 0 CGTCCCGGCG 0.926526 -234 GTCCGGCGTCGGTCGCTGCGAAGCAAAACT 26 97 0 GGTCGCTGCG 0.975862 -204 AAGCAGAACCCGTGGCTGGGTCCGGCGTCG 26 116 0 CGTGGCTGGG 0.881492 -185 GCACCAGCCTGACCCCGGGAATGTGGGGTG 26 162 1 GACCCCGGGA 0.572935 -139 AATGTGGGGTGGCCGTTGCGCGACTATGTT 26 181 1 GGCCGTTGCG 0.905642 -120 AGCCCCGGTTCGTCACGGCAGCCCGGTCAC 26 233 1 CGTCACGGCA 0.628048 -68 ACGGCAGCCCGGTCACCGCCCGGCCGCCGC 26 247 1 GGTCACCGCC 0.916282 -54 GTCACCGCCCGGCCGCCGCGCTGGCGGCCC 26 258 1 GGCCGCCGCG 0.509743 -43 ATCCGTCGTACGGGGCCGCCAGCGCGGCGG 26 270 0 CGGGGCCGCC 0.815727 -31 GGGGAACACGCGCGCTCGCGGCAAGGGGAG 27 15 0 CGCGCTCGCG 0.52551 -101 GGGGGCACCTCCCGCTTGCGGGGGAACACG 27 35 0 CCCGCTTGCG 0.636071 -81 TACCAGTGCGGACCCTCGCGCAAGGAGTGG 27 91 1 GACCCTCGCG 0.929111 -25 TTGCGGGGGAGAGCGGCGCCT 28 2 0 GAGCGGCGCC 0.894874 -152 ATGAGGTGGGGGTCCCTGCCGCTTGCGGGG 28 24 0 GGTCCCTGCC 0.946029 -130 GCTCTCCCTTCGTCGTCGCCCGCGCAGTCA 28 57 1 CGTCGTCGCC 0.958193 -97 GTCACAGTGTCATCCTGGCATGCTGCTCGC 28 83 1 CATCCTGGCA 0.517091 -71 ATCCTGGCATGCTGCTCGCACAGTGGTTCG 28 94 1 GCTGCTCGCA 0.721242 -60 CCAACCCCGGCGTGCCCGAGGCGTGCCAGA 29 47 1 CGTGCCCGAG 0.850958 -29 GACACCAGCCGCGCGTCCAAGAATT 32 6 1 CAGCCGCGCG 0.912131 -55 TGTCAGCCCGCACCCTTGCCGGATCCTTGA 32 38 0 CACCCTTGCC 0.550023 -23 CCCTCGTAGGCGTGACCGGGCCAGTAGCGC 33 42 0 CGTGACCGGG 0.796636 -31 ********** Masking position 8 Map Score: 164.236 Number of sites scoring better than the average of aligned sites = 120071 Number in coding regions = 112653 Number in noncoding regions = 7418 Number of orfs with sites within 600 bp upstream = 1686 Fraction of orfs with sites within 600 bp upstream = 0.2708 Motif number 2 ACTTTCCTCGGGATCTGGCGGGACTACCTCG 1 12 1 GGATCTGGCG 0.278764 -82 GACGACGAATGGCCCGGGGTGCAACGATAGA 1 47 1 GGCCCGGGGG 0.831494 -47 CGATAGAAGTTGCAGCTGCAGGCATACCTTG 1 71 1 TGCAGCTGCG 0.736652 -23 GGCTACCGCCTGACCCTGCCGGCAGTCGT 2 9 0 TGACCCTGCG 0.5146 -28 AATTCGTCGCCGCAGGTGCAGCGGTAGGCGT 3 12 1 CGCAGGTGCG 0.907603 -289 CATGCCACTGTGCTGGCGCCGGTGACGCCTA 3 36 0 TGCTGGCGCG 0.533831 -265 CAGCCACGAGGGCTGTGGCTGTCGGGTTCGC 3 77 0 GGCTGTGGCG 0.770177 -224 TACGAGGCTGGGACCTTGCTGACCTGCAGCC 3 103 0 GGACCTTGCG 0.620091 -198 GATTCCTCGGGGATCCCCGACACGGATGAGG 3 152 0 GGATCCCCGC 0.26304 -149 TAAACCCCCAGGCCGGTGGGCGGTTGCCTGC 3 248 1 GGCCGGTGGC 0.889439 -53 GGCGGTTGCCTGCTGGCGCGCGACGGTCGGT 3 266 1 TGCTGGCGCC 0.535849 -35 ACGCTAGCGCGACCACCGACCGTCGCGCGC 3 281 0 CGACCACCGC 0.290053 -20 AGAACCGGCCGGGACGTGCAGCGCACGCAGG 4 15 0 GGGACGTGCG 0.648671 -54 TCTGCTACCGCGCTGCTGCTGCCTGCCCTGC 4 43 1 CGCTGCTGCG 0.928785 -26 AGTCGCAGATGGCCGCGACATAGG 5 4 1 CGCAGATGGC 0.529815 -56 GTTTGGCGACGGCCCCGACGGGAAGATATAA 5 35 1 GGCCCCGACG 0.935937 -25 GGAGAAAGGTGGGCGCGCCGCCCTGTTGAGC 7 25 1 GGGCGCGCCC 0.950817 -247 AGTTCATCACCGAACCGGCACAGTGTCGCTC 7 89 0 CGAACCGGCC 0.754299 -183 TACTCGATCATGGCGCTGCTCGCAGTTCATC 7 112 0 TGGCGCTGCC 0.772154 -160 GAGTACGCGGTGACCCTCCACAGAAAGCCGC 7 138 1 TGACCCTCCC 0.399396 -134 CACAGAAAGCCGCCCGGGCGCCAACTCACGA 7 156 1 CGCCCGGGCC 0.948653 -116 ATGGTGCCCGGGGCCTTGGTCACATGTGGTC 7 185 0 GGGCCTTGGC 0.441119 -87 CAGTAATCATGGCCGCTGGGCGTCAGCCGGA 7 220 0 GGCCGCTGGC 0.945865 -52 CGGACCGTATGGCCGGGCCGCGC 9 3 0 GGCCGGGCCC 0.959599 -40 CCCGGCCATACGGTCCGGCTGTGACACTCTG 9 17 1 CGGTCCGGCG 0.769432 -26 GCACGCCGTATGCCGCTACGCAACCATTTCG 10 23 1 TGCCGCTACC 0.748211 -39 GTATCCGCAAGGCCGCTACACCGTCCTGACC 11 80 1 GGCCGCTACC 0.954084 -122 GACGCGACGTGGCCCCTGGTGCATCGGTCAG 11 105 0 GGCCCCTGGG 0.906966 -97 GCTATCGGATGGTCGCGGCAGGAGGCAAGCC 11 173 0 GGTCGCGGCG 0.527481 -29 TGCCGTTTCTCGCTGACCGCGAGACGTTGAC 12 35 0 CGCTGACCGG 0.399263 -81 CCGTCCCGGGGGGTGTTGCTGTGCGAGCAGC 12 75 0 GGGTGTTGCG 0.496772 -41 GGACGGAGACCGGAGCCGGTCACGGA 12 100 1 CGGAGCCGGC 0.764127 -16 GGGTGTTATGGGCCGCTCGGCGCGC 13 5 0 GGCCGCTCGC 0.917973 -203 ACCCGCGCGCCGGAGTTGCTCAACATTGGCC 13 32 1 CGGAGTTGCC 0.6332 -176 GAAACCTAGAGGCCCCACCCGTTCGATCACA 13 78 0 GGCCCCACCG 0.582673 -130 CCCCCAGCCGCGAAGCGGCGCGCAAGGAGTC 14 37 0 CGAAGCGGCC 0.848826 -104 CGCGCATGGGGGCACCCCCAGCCGCGAAGCG 14 51 0 GGCACCCCCG 0.910957 -90 CGTAGCCCGACGACGATGCACGCCGCGCAAA 14 85 0 CGACGATGCC 0.738431 -56 CGTCGGGCTACGCCCGGGCCGATCGGCGTAT 14 104 1 CGCCCGGGCG 0.530243 -37 CACCTTCTGAGGGCGCGACAGGTGGCCGGAG 15 15 0 GGGCGCGACG 0.907222 -210 CGACGCTATCGGCAGCTACACCTTCTGAGGG 15 33 0 GGCAGCTACC 0.863104 -192 ACCGCGCGGACGCCGCGGCACACCGCGACGC 15 58 0 CGCCGCGGCC 0.984178 -167 TCCGCGCGGTCGCTCGTGCCCGACTCGTGGA 15 79 1 CGCTCGTGCC 0.756985 -146 GCCCGACTCGTGGAGCGACTCGGCGCCCTCA 15 96 1 TGGAGCGACC 0.301405 -129 CAATCGAAAACGCCCTGACCCTGATCCTCGG 15 145 1 CGCCCTGACC 0.682347 -80 GACCTGAGCGCGGCGAGGCGGCGACCCATTC 15 187 1 CGGCGAGGCG 0.860072 -38 CGCACCTCCGCCCACCGGGAC 17 1 1 CGCACCTCCC 0.879752 -263 TCCGCCCACCGGGACTTGCTGTTGCAACCAG 17 17 1 GGGACTTGCG 0.468865 -247 TGCAACCAGTCGCCCAAACCGTAGCAAGGAC 17 39 1 CGCCCAAACG 0.132068 -225 ACCGTAGCAAGGACGGCCGACTGCACCGATG 17 56 1 GGACGGCCGC 0.618373 -208 CCGACTGCACCGATGTCCCCGCCGAGGTGTC 17 72 1 CGATGTCCCG 0.366145 -192 GCGAGTTGGTGGCCCCGGCGGCCGTTGCCGA 17 101 0 GGCCCCGGCG 0.974116 -163 GCCACCAACTCGCCGCGCCCTGGATGTGTGT 17 119 1 CGCCGCGCCT 0.473835 -145 TCACTGCGCCCGGAGCGACACACATCCAGGG 17 136 0 CGGAGCGACC 0.766905 -128 TCGCTCCGGGCGCAGTGACAGGATAGGTTTC 17 149 1 CGCAGTGACG 0.663379 -115 ACCTGGGTTCCGCACCCGGTGCGCGACCGTG 17 187 1 CGCACCCGGG 0.828274 -77 CGTCGGTCGGCGCAGGTCCACCTCTGGCCTA 17 221 0 CGCAGGTCCC 0.860364 -43 CGCACGGCTGGGCAGACGGGGTCAAGC 18 7 0 GGCAGACGGG 0.611761 -46 TAGGCTACTCGGCCGCCAGCGCACGGCTGGG 18 26 0 GGCCGCCAGG 0.542063 -27 CGCCCGTATCCGCCGGCACAGCGTCTAAATT 19 17 0 CGCCGGCACG 0.937361 -52 GGGCGTGCGGCGACCACCCTGGCAGACTGTG 19 43 1 CGACCACCCG 0.600934 -26 CTTCGAACCACGCACCTGCGCTACCAGCCCC 20 28 0 CGCACCTGCC 0.919587 -71 GGCGAGCACCGGCCGCGACCGCCTCTGCCTG 21 99 1 GGCCGCGACG 0.725615 -202 TAATCATTTCCGCAGGCAGAGGCGGTCGCGG 21 111 0 CGCAGGCAGG 0.571887 -190 ACCCACGGCCGGACGGTCCGCGGACTGCGTT 21 150 0 GGACGGTCCC 0.796602 -151 CGGACCGTCCGGCCGTGGGTGGGTCCTGTCG 21 161 1 GGCCGTGGGG 0.829071 -140 TGGGTCCTGTCGCCGCCCCGGCTGGTGCCAT 21 180 1 CGCCGCCCCG 0.985318 -121 CTTAATGGGTCGCAGCCCCCCGGGGTCGTCG 21 256 0 CGCAGCCCCC 0.952337 -45 GCGGGTCAATCGAAGATGCCCCG 22 3 0 CGAAGATGCC 0.461356 -171 TCTGCATCGTCGCCGGCGCGGGTCAATCGAA 22 20 0 CGCCGGCGCG 0.960676 -154 GGGTCACTGGCGCCGCTCCTCCCCATCGCTT 22 54 0 CGCCGCTCCC 0.977829 -120 TCTGCATCGTCGCCGGCGCGGGTCACTGGCG 22 73 0 CGCCGGCGCG 0.960676 -101 GGGTCACTGGCGCCGCTCCTCCCCATCGCTT 22 107 0 CGCCGCTCCC 0.977829 -67 TCTGCATCGTCGCCGGCGCGGGTCACTGGCG 22 126 0 CGCCGGCGCG 0.960676 -48 TGGCGCCGCTCCTCCCCATCGCTT 22 160 0 CGCCGCTCCC 0.977829 -14 TACGTGGCGGGGGTCCTCCACCATGCTGGAG 23 55 1 GGGTCCTCCC 0.605965 -23 TCATACAATTCGCCGGGACGCGCAATCCCCA 26 67 1 CGCCGGGACC 0.928421 -234 AGTTTTGCTTCGCAGCGACCGACGCCGGACC 26 97 1 CGCAGCGACG 0.897675 -204 CGACCGACGCCGGACCCAGCCACGGGTTCTG 26 112 1 CGGACCCAGC 0.358887 -189 CACATTCCCGGGGTCAGGCTGGTGCATACCT 26 156 0 GGGTCAGGCG 0.377736 -145 AATGTGGGGTGGCCGTTGCGCGACTATGTTG 26 181 1 GGCCGTTGCC 0.932955 -120 CGGGGCTTCGGGCCGTCACAGTGACCTTCAA 26 209 0 GGCCGTCACG 0.874006 -92 TGTGACGGCCCGAAGCCCCGGTTCGTCACGG 26 220 1 CGAAGCCCCG 0.81101 -81 GGCCGGGCGGTGACCGGGCTGCCGTGACGAA 26 241 0 TGACCGGGCG 0.383911 -60 GTCACCGCCCGGCCGCCGCGCTGGCGGCCCC 26 258 1 GGCCGCCGCC 0.981362 -43 GCCGCCGCGCTGGCGGCCCCGTACGACGGAT 26 269 1 TGGCGGCCCG 0.603257 -32 CGCTTGCGGGGGAACACGCGCGCTCGCGGCA 27 22 0 GGAACACGCC 0.391011 -94 GCGTACTGGGGGCACCTCCCGCTTGCGGGGG 27 41 0 GGCACCTCCG 0.87249 -75 GCCCCCAGTACGCCGACACACCGATTTTGAT 27 59 1 CGCCGACACC 0.867721 -57 GTACCAGTGCGGACCCTCGCGCAAGGAGTGG 27 90 1 GGACCCTCGG 0.567564 -26 GGCCGCCACTCCTTGCGCGAG 27 105 0 GGCCGCCACC 0.967314 -11 AGGCGCCGCTCTCCCCCGCAAGCGGCA 28 7 1 CGCTCTCCCC 0.594473 -147 GCAAGCGGCAGGGACCCCCACCTCATCGTGC 28 28 1 GGGACCCCCC 0.789935 -126 CCTTCGTCGTCGCCCGCGCAGTCACAGTGTC 28 63 1 CGCCCGCGCG 0.94748 -91 CAGCATGCCAGGATGACACTGTGACTGCGCG 28 77 0 GGATGACACG 0.194027 -77 ACAGTGGTTCGGGCGACAGGCCTAGGATGTC 28 113 1 GGGCGACAGC 0.382909 -41 CCCGACAGGGCGCCGTTACACAAGTAGTCTA 29 13 0 CGCCGTTACC 0.833029 -63 TAGCCAACCCCGGCGTGCCCGAGGCGTGCCA 29 44 1 CGGCGTGCCG 0.814591 -32 CCTCCAACTACGGTGTTGGTCAG 30 3 0 CGGTGTTGGC 0.226049 -26 ATGAATTCTTGGACGCGCGGCTGGTGTC 32 8 0 GGACGCGCGC 0.75027 -53 CAAGGGTGCGGGCTGACACTG 32 50 1 GGCTGACACG 0.533591 -11 TGCTCGGGTCGGGCGCTACTGGCCCGGTCAC 33 30 1 GGGCGCTACG 0.8882 -43 ********* * Masking position 2 Map Score: 138.09 Number of sites scoring better than the average of aligned sites = 130937 Number in coding regions = 122667 Number in noncoding regions = 8270 Number of orfs with sites within 600 bp upstream = 1735 Fraction of orfs with sites within 600 bp upstream = 0.27867 Motif number 3 TGCACCCCGGGCCATTCGTCGTCTTGTCGAGGT 1 37 0 GCATTCCGTC 0.342011 -57 TTCTGCTACCGCGCTGCTGCTGCCTGCCCTGCA 4 42 1 GCCTGCCTGC 0.482903 -27 TCGTGAGTTGGCGCCCGGGCGGCTTTCTGTGGA 7 154 0 GCCCCGCGGC 0.77053 -118 AAGGCCCCGGGCACCATACCGTCCGGCTGACGC 7 199 1 GCCCATCGTC 0.708074 -73 AGTAATCATGGCCGCTGGGCGTCAGCCGGACGG 7 217 0 GCGCTGCGTC 0.747067 -55 ATCCGCAAGGCCGCTACACCGTCCTGACCGATG 11 82 1 CCCTACCGTC 0.918541 -120 CGCGACGTGGCCCCTGGTGCATCGGTCAGGACG 11 101 0 CCCTGGCATC 0.680368 -101 AGATCACACCGAGCGTCAACGTCTCGCGGTCAG 12 21 1 GACGTCCGTC 0.721302 -95 CGTGACCGGCTCCGGTCTCCGTCCCGGGGGGTG 12 91 0 TCGGTCCGTC 0.389789 -25 CGCGCTATATCCCCGACCTCGGCAACACTCAAC 13 146 0 CCCGACCGGC 0.905553 -62 GCGTCGCGGTGTGCCGCGGCGTCCGCGCGGTCG 15 58 1 GTCCGCCGTC 0.846379 -167 CCGCGCGGTCGCTCGTGCCCGACTCGTGGAGCG 15 80 1 GCCGTGCGAC 0.559032 -145 GGAGAATGGGTCGCCGCCTCGCCGCGCTCAGGT 15 188 0 TCCCGCCGCC 0.87292 -37 GCTTGACCCCGTCTGCCCAGCCG 18 1 1 GCTGACCGTC 0.620337 -52 CCCGTATCCGCCGGCACAGCGTCTAAATTGACG 19 13 0 CCGCACCGTC 0.842733 -56 CGAGCACCGGCCGCGACCGCCTCTGCCTGCGGA 21 101 1 CCCGACCCTC 0.425407 -200 CGAAACGCAGTCCGCGGACCGTCCGGCCGTGGG 21 147 1 TCGCGGCGTC 0.654635 -154 GTGGGTCCTGTCGCCGCCCCGGCTGGTGCCATT 21 179 1 TCCCGCCGGC 0.946326 -122 GGTCGCAGCCCCCCGGGGTCGTCGCATGTCCAA 21 247 0 CCCGGGCGTC 0.957148 -54 ATCTTCGATTGACCCGCGCCGGCGACGATGCAG 22 17 1 GACCGCCGGC 0.903649 -157 CCATCGCTTTGCTCTGCATCGTCGCCGGCGCGG 22 30 0 GCCTGCCGTC 0.984701 -144 CACTGGCGCCGCTCCTCCCCATCGCTTTGCTCT 22 48 0 GCCCTCCATC 0.916255 -126 CGGCGCCAGTGACCCGCGCCGGCGACGATGCAG 22 70 1 GACCGCCGGC 0.903649 -104 CCATCGCTTTGCTCTGCATCGTCGCCGGCGCGG 22 83 0 GCCTGCCGTC 0.984701 -91 CACTGGCGCCGCTCCTCCCCATCGCTTTGCTCT 22 101 0 GCCCTCCATC 0.916255 -73 CGGCGCCAGTGACCCGCGCCGGCGACGATGCAG 22 123 1 GACCGCCGGC 0.903649 -51 CCATCGCTTTGCTCTGCATCGTCGCCGGCGCGG 22 136 0 GCCTGCCGTC 0.984701 -38 TGGCGCCGCTCCTCCCCATCGCTTTGCTCT 22 154 0 GCCCTCCATC 0.916255 -20 TGGTGGAGGACCCCCGCCACGTATTGACACTTT 23 45 0 CCCCGCCGTA 0.712605 -33 CCCCAGTTTTGCTTCGCAGCGACCGACGCCGGA 26 93 1 GCTCGCCGAC 0.485461 -208 ACGGCCCGAAGCCCCGGTTCGTCACGGCAGCCC 26 224 1 GCCCGGCGTC 0.989807 -77 TCGTACGGGGCCGCCAGCGCGGCGGCCGGGCGG 26 262 0 CCCCAGCGGC 0.899986 -39 GCGGGAGGTGCCCCCAGTACGCCGACACACCGA 27 50 1 CCCCAGCGCC 0.77805 -66 GCGAGGGTCCGCACTGGTACATCAAAATCGGTG 27 77 0 GCCTGGCATC 0.808459 -39 GCGGCAGGGACCCCCACCTCATCGTGCTCTCCC 28 32 1 CCCCACCATC 0.859627 -122 CATCGTGCTCTCCCTTCGTCGTCGCCCGCGCAG 28 51 1 TCCTTCCGTC 0.747567 -103 GACAGATTGTGCCCGACGACATCCTAGGCCTGT 28 128 0 GCCGACCATC 0.846761 -26 GTCTGGCACGCCTCGGGCACGCCGGGGTTGGCT 29 45 0 CCCGGGCGCC 0.821211 -31 ** **** **** Masking position 10 Map Score: 57.8866 Number of sites scoring better than the average of aligned sites = 20447 Number in coding regions = 19054 Number in noncoding regions = 1393 Number of orfs with sites within 600 bp upstream = 796 Fraction of orfs with sites within 600 bp upstream = 0.127851 Motif number 4 CGTCGCCGCAGGTGCAGCGGTAGGCGTCAC 3 16 1 GGTGCAGCGG 0.92368 -285 AGCCACGAGGGCTGTGGCTGTCGGGTTCGC 3 77 0 GCTGTGGCTG 0.662668 -224 CCCCCAGGCCGGTGGGCGGTTGCCTGCTGG 3 252 1 GGTGGGCGGT 0.310152 -49 GCGAAATGCGGGTGTATCTCGACTCGTCGT 6 50 0 GGTGTATCTC 0.444249 -70 GAGAAAGGTGGGCGCGCCGCCCTGTTGAGC 7 26 1 GGCGCGCCGC 0.937906 -246 GGCTTTCTGTGGAGGGTCACCGCGTACTCG 7 137 0 GGAGGGTCAC 0.215115 -135 TCGAAATGGTTGCGTAGCGGCATACGGCGT 10 25 0 TGCGTAGCGG 0.315932 -37 CGGTCAGGACGGTGTAGCGGCCTTGCGGAT 11 82 0 GGTGTAGCGG 0.936598 -120 CGTGGCCCCTGGTGCATCGGTCAGGACGGT 11 99 0 GGTGCATCGG 0.668698 -103 CGTCCCGGGGGGTGTTGCTGTGCGAGCAGC 12 75 0 GGTGTTGCTG 0.508816 -41 GAGCAACTCCGGCGCGCGGGTGTTATGGGC 13 23 0 GGCGCGCGGG 0.914 -185 CCCGCGCGCCGGAGTTGCTCAACATTGGCC 13 33 1 GGAGTTGCTC 0.233957 -175 CCGCTTCGCGGCTGGGGGTGCCCCCATGCG 14 50 1 GCTGGGGGTG 0.591513 -91 GATCGGCCCGGGCGTAGCCCGACGACGATG 14 98 0 GGCGTAGCCC 0.630432 -43 CGGGCCGATCGGCGTATCTGGGAAGATGGT 14 118 1 GGCGTATCTG 0.636001 -23 GCCCTCAGAAGGTGTAGCTGCCGATAGCGT 15 32 1 GGTGTAGCTG 0.872864 -193 ATAGCGTCGCGGTGTGCCGCGGCGTCCGCG 15 55 1 GGTGTGCCGC 0.924798 -170 ACCTGAGCGCGGCGAGGCGGCGACCCATTC 15 188 1 GGCGAGGCGG 0.817339 -37 AGTCCCGGTGGGCGGAGGTGCG 17 3 0 GGCGGAGGTG 0.88536 -261 GCGGAACCCAGGTGGATGTCGAAACCTATC 17 170 0 GGTGGATGTC 0.370769 -94 TTCCGCACCCGGTGCGCGACCGTGTGATAG 17 194 1 GGTGCGCGAC 0.329357 -70 ATAGGCCAGAGGTGGACCTGCGCCGACCGA 17 220 1 GGTGGACCTG 0.834275 -44 CAATTTAGACGCTGTGCCGGCGGATACGGG 19 16 1 GCTGTGCCGG 0.671005 -53 GGCGGATACGGGCGTGCGGCGACCACCCTG 19 34 1 GGCGTGCGGC 0.869409 -35 AATGGCACCAGCCGGGGCGGCGACAGGACC 21 182 0 GCCGGGGCGG 0.907417 -119 CATCGTCGCCGGCGCGGGTCAATCGAAGAT 22 17 0 GGCGCGGGTC 0.877603 -157 AAAGCGATGGGGAGGAGCGGCGCCAGTGAC 22 53 1 GGAGGAGCGG 0.904575 -121 CATCGTCGCCGGCGCGGGTCACTGGCGCCG 22 70 0 GGCGCGGGTC 0.877603 -104 AAAGCGATGGGGAGGAGCGGCGCCAGTGAC 22 106 1 GGAGGAGCGG 0.904575 -68 CATCGTCGCCGGCGCGGGTCACTGGCGCCG 22 123 0 GGCGCGGGTC 0.877603 -51 AAAGCGATGGGGAGGAGCGGCGCCA 22 159 1 GGAGGAGCGG 0.904575 -15 GTCAATACGTGGCGGGGGTCCTCCACCATG 23 50 1 GGCGGGGGTC 0.93019 -28 CCAGCGCGGCGGCCGGGCGGTGACCGGGCT 26 252 0 GGCCGGGCGG 0.829192 -49 CATCAAAATCGGTGTGTCGGCGTACTGGGG 27 61 0 GGTGTGTCGG 0.858924 -55 CCTCGCGCAAGGAGTGGCGGCC 27 104 1 GGAGTGGCGG 0.939088 -12 AGCACGATGAGGTGGGGGTCCCTGCCGCTT 28 30 0 GGTGGGGGTC 0.897245 -124 AGCCAACCCCGGCGTGCCCGAGGCGTGCCA 29 45 1 GGCGTGCCCG 0.744619 -31 GCGTGCCCGAGGCGTGCCAGACTCAAACAC 29 56 1 GGCGTGCCAG 0.729815 -20 CACCGTAGTTGGAGGACGGC 30 19 1 GGAGGACGGC 0.607703 -10 GAATTGCTCGGGTCGGGCGCTACTGGCCCG 33 26 1 GGTCGGGCGC 0.68953 -47 ********** Masking position 1 Map Score: 52.4103 Number of sites scoring better than the average of aligned sites = 24313 Number in coding regions = 22483 Number in noncoding regions = 1830 Number of orfs with sites within 600 bp upstream = 1032 Fraction of orfs with sites within 600 bp upstream = 0.165757 Motif number 5 CACTTTCCTCGGGATCTGGCGGGA 1 1 1 CACTTCCGGA 0.48935 -93 GCGCCGGTGACGCCTACCGCTGCACCTGCGGCGA 3 18 0 CGCTACCGCA 0.978765 -283 AGTCGCAGATGGCCGCGACATAGGGTT 5 4 1 CGCGAGCGCG 0.828633 -56 TGTTACCAATCACGTAACCCAGCGTTTTGCGGAG 6 12 0 CACTACCGCG 0.896744 -108 GCATGTTAAGCGCTCAACAGGGCGGCGCGCCCAC 7 33 0 CGCCACGGCG 0.72457 -239 ACGAGTAGACCGCATTGCCGAGCGACACTGTGCC 7 70 1 CGCTTCGGCG 0.971339 -202 GGCGCCCGGGCGGCTTTCTGTGGAGGGTCACCGC 7 144 0 CGGTTCGGGA 0.669169 -128 CACCCCCAGCCGCGAAGCGGCGCGCAAGGAGTCG 14 36 0 CGCAACGGCG 0.744702 -105 GCGCAAACGGCGCGCATGGGGGCACCCCCAGCCG 14 58 0 CGCCAGGGCA 0.85572 -83 CCCATGCGCGCCGTTTGCGCGGCGTGCATCGTCG 14 72 1 CCGTTCCGCG 0.591512 -69 GCGCGGACGCCGCGGCACACCGCGACGCTATCGG 15 52 0 CGCGCCCGCG 0.725722 -173 CGCATCGTGGCGGGTTTGAGGGCGCCGAGTCGCT 15 109 0 CGGTTGGGCG 0.881566 -116 TGACCCCGTCTGCCCAGCCGTGCGCTGGCGGCCG 18 14 1 TGCCACGGCG 0.602609 -39 AAAGGTTTCACGATTTCGTGTGCGTGAGTTGGCG 21 53 1 CGATTGGGCG 0.650847 -248 CGGCCGCGACCGCCTCTGCCTGCGGAAATGATTA 21 108 1 CGCTCGCGCG 0.938648 -193 GTCCGCGGACTGCGTTTCGCAGCGTAATCATTTC 21 132 0 TGCTTCCGCG 0.936359 -169 TCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGG 22 35 0 CGCTTCCGCA 0.951792 -139 TCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGG 22 88 0 CGCTTCCGCA 0.951792 -86 TCCTCCCCATCGCTTTGCTCTGCATCGTCGCCGG 22 141 0 CGCTTCCGCA 0.951792 -33 ACAAATGCTGCGCTTATCAGGGGGTTAGACCAAC 26 31 1 CGCTACGGGG 0.957637 -270 GTCAGGCTGGTGCATACCTGTGCGAGTCGAAGCA 26 141 0 TGCTACGGCG 0.830573 -160 CGCGAGCGCGCGTGTTCCCCCGCAAGCGGGAGGT 27 25 1 CGTTTCCGCA 0.743035 -91 AGGCGCCGCTCTCCCCCGCAAGCGGCAGGG 28 7 1 CGCCTCCGCA 0.944082 -147 GGCCCGGTCACGCCTACGAGGGGACTTCGCCGA 33 50 1 CGCTAGGGGA 0.774935 -23 *** ** * * *** Masking position 12 Map Score: 37.3495 Number of sites scoring better than the average of aligned sites = 6865 Number in coding regions = 6328 Number in noncoding regions = 537 Number of orfs with sites within 600 bp upstream = 374 Fraction of orfs with sites within 600 bp upstream = 0.0600707 Motif number 6 CGTGACAGGCTACCGCCTGA 2 27 0 CGTGACAGGC 0.796558 -10 TCGATGCGAACCCGACAGCCACAGCCCTCG 3 72 1 CCCGACAGCC 0.955128 -229 CTCGGGGATCCCCGACACGGATGAGGGTGA 3 148 0 CCCGACACGG 0.887546 -153 CCTGCTGGCGCGCGACGGTCGGTGGTCGCG 3 274 1 CGCGACGGTC 0.941813 -27 CAGAACCGGCCGGGACGTGCAGCGCACGCA 4 17 0 CGGGACGTGC 0.377434 -52 TGGCGACGGCCCCGACGGGAAGATATAACA 5 38 1 CCCGACGGGA 0.976994 -22 GAAAGGTGGGCGCGCCGCCCTGTTGAGCGC 7 28 1 CGCGCCGCCC 0.927966 -244 TGGGCGTCAGCCGGACGGTATGGTGCCCGG 7 205 0 CCGGACGGTA 0.4045 -67 TGGGACTGTCCGCGACGCGACGTGGCCCCT 11 119 0 CGCGACGCGA 0.962068 -83 ATCGGATGGTCGCGGCAGGAGGCAAGCCAG 11 171 0 CGCGGCAGGA 0.812598 -31 TCCGTGACCGGCTCCGGTCTCC 12 104 0 CGTGACCGGC 0.684955 -12 GTTGAGCAACTCCGGCGCGCGGGTGTTATG 13 26 0 TCCGGCGCGC 0.47489 -182 CACCCCCAGCCGCGAAGCGGCGCGCAAGGA 14 40 0 CGCGAAGCGG 0.386506 -101 CCGGGCGTAGCCCGACGACGATGCACGCCG 14 91 0 CCCGACGACG 0.714417 -50 CTTCTGAGGGCGCGACAGGTGGCCGGAGTG 15 13 0 CGCGACAGGT 0.845103 -212 CGCGGCACACCGCGACGCTATCGGCAGCTA 15 46 0 CGCGACGCTA 0.751204 -179 GTCGCTCGTGCCCGACTCGTGGAGCGACTC 15 87 1 CCCGACTCGT 0.172228 -138 CGCCCTCAAACCCGCCACGATGCGCGCAAT 15 119 1 CCCGCCACGA 0.697148 -106 TCCTCGGCCTCCCGACGGGACCTGAGCGCG 15 169 1 CCCGACGGGA 0.976994 -56 AGTTGGTGGCCCCGGCGGCCGTTGCCGACA 17 99 0 CCCGGCGGCC 0.935035 -165 GAGCACCGGCCGCGACCGCCTCTGCCTGCG 21 102 1 CGCGACCGCC 0.93798 -199 CCACCCACGGCCGGACGGTCCGCGGACTGC 21 153 0 CCGGACGGTC 0.627484 -148 CAGCCGGGGCGGCGACAGGACCCACCCACG 21 174 0 GGCGACAGGA 0.551585 -127 GCCATTTGCTCCCGACGAGCATTTTCTTCC 21 206 1 CCCGACGAGC 0.898306 -95 TCGATTGACCCGCGCCGGCGACGATGCAGA 22 21 1 CGCGCCGGCG 0.929874 -153 GCCAGTGACCCGCGCCGGCGACGATGCAGA 22 74 1 CGCGCCGGCG 0.929874 -100 GCCAGTGACCCGCGCCGGCGACGATGCAGA 22 127 1 CGCGCCGGCG 0.929874 -47 TTTATCATTTTCCGACAGGAGGTG 23 5 0 TCCGACAGGA 0.534758 -73 ATTGACACTTTGCGACAGCCTTTTATCATT 23 26 0 TGCGACAGCC 0.686235 -52 GTGGAGGACCCCCGCCACGTATTGACACTT 23 46 0 CCCGCCACGT 0.402519 -32 TACAATTCGCCGGGACGCGCAATCCCCAGT 26 70 1 CGGGACGCGC 0.894172 -231 AACATAGTCGCGCAACGGCCACCCCACATT 26 181 0 CGCAACGGCC 0.629512 -120 TGAAGGTCACTGTGACGGCCCGAAGCCCCG 26 210 1 TGTGACGGCC 0.352665 -91 GGGCCGCCAGCGCGGCGGCCGGGCGGTGAC 26 258 0 CGCGGCGGCC 0.949095 -43 CAGTGGTTCGGGCGACAGGCCTAGGATGTC 28 114 1 GGCGACAGGC 0.753108 -40 ACAGATTGTGCCCGACGACATCCTAGGCCT 28 130 0 CCCGACGACA 0.679217 -24 GGGTTGGCTACCCGACAGGGCGCCGTTACA 29 24 0 CCCGACAGGG 0.944586 -52 GCCAGTAGCGCCCGACCCGAGCAATTCTAT 33 23 0 CCCGACCCGA 0.787595 -50 CCCTCGTAGGCGTGACCGGGCCAGTAGCGC 33 42 0 CGTGACCGGG 0.508556 -31 ********** Masking position 6 Map Score: 57.0491 Number of sites scoring better than the average of aligned sites = 20279 Number in coding regions = 18693 Number in noncoding regions = 1586 Number of orfs with sites within 600 bp upstream = 857 Fraction of orfs with sites within 600 bp upstream = 0.137649 Motif number 7 CGTGACAGGCTACCGCCTGACCCTGCC 2 20 0 GGCTACCGCC 0.923734 -17 AGGCGTCACCGGCGCCAGCACAGTGGCATG 3 37 1 GGCGCCAGCA 0.907006 -264 CGAACCCGACAGCCACAGCCCTCGTGGCTG 3 78 1 AGCCACAGCC 0.593165 -223 AGGTCAGCAAGGTCCCAGCCTCGTAGTTCG 3 109 1 GGTCCCAGCC 0.564941 -192 CGCGCCAGCAGGCAACCGCCCACCGGCCTG 3 256 0 GGCAACCGCC 0.964945 -45 CGGCCGGTTCTGCTACCGCGCTGCTGCTGC 4 35 1 TGCTACCGCG 0.152941 -34 TTGCAGGGCAGGCAGCAGCAGCGCGGTAGC 4 46 0 GGCAGCAGCA 0.559781 -23 CATAGGGTTTGGCGACGGCCCCGACGGGAA 5 29 1 GGCGACGGCC 0.934531 -31 CGAGTCGAGATACACCCGCATTTCGCGTAC 6 54 1 TACACCCGCA 0.100658 -66 ATGGCCGCTGGGCGTCAGCCGGACGGTATG 7 213 0 GGCGTCAGCC 0.654673 -59 GGGCTCCAAGCGTAGTGATCC 8 67 0 GGCTCCAAGC 0.311871 -11 TCCGTGACCGGCTCCGGTCTCCGTCCCGG 12 97 0 GGCTCCGGTC 0.573034 -19 GAAACCTAGAGGCCCCACCCGTTCGATCAC 13 79 0 GGCCCCACCC 0.890382 -129 AGTCGTCAGGCTACAACCGATTGCCCGA 14 9 1 GGCTACAACC 0.760325 -132 CGCGCATGGGGGCACCCCCAGCCGCGAAGC 14 52 0 GGCACCCCCA 0.641971 -89 ATCGTCGTCGGGCTACGCCCGGGCCGATCG 14 99 1 GGCTACGCCC 0.805362 -42 GGCGACTGGTTGCAACAGCAAGTCCCGGTG 17 23 0 TGCAACAGCA 0.517197 -241 CCGAGGTGTCGGCAACGGCCGCCGGGGCCA 17 93 1 GGCAACGGCC 0.965905 -171 ACGGGCGTGCGGCGACCACCCTGGCAGACT 19 41 1 GGCGACCACC 0.718302 -28 GTAACCGGCGAGCACCGGCCGCGACCGCCT 21 93 1 AGCACCGGCC 0.786403 -208 GGGAGCAAATGGCACCAGCCGGGGCGGCGA 21 189 0 GGCACCAGCC 0.98141 -112 TGGTGCCATTTGCTCCCGACGAGCATTTTC 21 202 1 TGCTCCCGAC 0.171641 -99 GACCCCGGGGGGCTGCGACCCATTAAGTAG 21 260 1 GGCTGCGACC 0.353288 -41 ATTGACACTTTGCGACAGCCTTTTATCATT 23 26 0 TGCGACAGCC 0.821024 -52 CATGGTGGAGGACCCCCGCCACGTATTGAC 23 50 0 GACCCCCGCC 0.729839 -28 GGCTCCAGCATGGTGGAGGA 23 68 0 GGCTCCAGCA 0.907521 -10 GGCAAATGCCGAGATTAACA 26 1 1 GGCAAATGCC 0.122286 -300 GACCGACGCCGGACCCAGCCACGGGTTCTG 26 113 1 GGACCCAGCC 0.697644 -188 CGCACAGGTATGCACCAGCCTGACCCCGGG 26 151 1 TGCACCAGCC 0.923674 -150 AACATAGTCGCGCAACGGCCACCCCACATT 26 181 0 CGCAACGGCC 0.612131 -120 GCGTACTGGGGGCACCTCCCGCTTGCGGGG 27 42 0 GGCACCTCCC 0.644345 -74 CAGTGGTTCGGGCGACAGGCCTAGGATGTC 28 114 1 GGCGACAGGC 0.691754 -40 GACACCAGCCGCGCGTCCAA 32 1 1 GACACCAGCC 0.838603 -60 AATTCATCAAGGATCCGGCAAGGGTGCGGG 32 32 1 GGATCCGGCA 0.282674 -29 ********** Masking position 6 Map Score: 35.9185 Number of sites scoring better than the average of aligned sites = 15326 Number in coding regions = 14402 Number in noncoding regions = 924 Number of orfs with sites within 600 bp upstream = 595 Fraction of orfs with sites within 600 bp upstream = 0.095567 Motif number 8 GCAGCGGTAGGCGTCACCGGCGCCAGCACA 3 29 1 GCGTCACCGG 0.989857 -272 TACCCTATACGGGTATCTGGTAAACCCCCA 3 228 1 GGGTATCTGG 0.752814 -73 TTTCTGTGGAGGGTCACCGCGTACTCGATC 7 134 0 GGGTCACCGC 0.969201 -138 TGGCAGGCATGGGTGAACGGATCAGATCGC 7 251 1 GGGTGAACGG 0.759978 -21 GGGCCGATCGGCGTATCTGGGAAGATGGTT 14 119 1 GCGTATCTGG 0.682429 -22 ACGGGAGAATGGGTCGCCGCCTCGCCGCGC 15 194 0 GGGTCGCCGC 0.954131 -31 GCTACGGTTTGGGCGACTGGTTGCAACAGC 17 34 0 GGGCGACTGG 0.867587 -230 TTGGCGGGCATGGTAACCGGCGAGCACCGG 21 81 1 TGGTAACCGG 0.870121 -220 TTGCTCTGCATCGTCGCCGGCGCGGGTCAA 22 25 0 TCGTCGCCGG 0.934125 -149 TCGCCGGCGCGGGTCACTGGCGCCGCTCCT 22 65 0 GGGTCACTGG 0.984019 -109 TTGCTCTGCATCGTCGCCGGCGCGGGTCAC 22 78 0 TCGTCGCCGG 0.934125 -96 TCGCCGGCGCGGGTCACTGGCGCCGCTCCT 22 118 0 GGGTCACTGG 0.984019 -56 TTGCTCTGCATCGTCGCCGGCGCGGGTCAC 22 131 0 TCGTCGCCGG 0.934125 -43 GGCGGCCGGGCGGTGACCGGGCTGCCGTGA 26 245 0 CGGTGACCGG 0.861748 -56 GATGAGGTGGGGGTCCCTGCCGCTTGCGGG 28 25 0 GGGTCCCTGC 0.722747 -129 CTCGGGTCGGGCGCTACTGGCCCGGTCACG 33 32 1 GCGCTACTGG 0.46975 -41 CCCCTCGTAGGCGTGACCGGGCCAGTAGCG 33 43 0 GCGTGACCGG 0.978251 -30 ********** Masking position 3 Map Score: 23.9014 Number of sites scoring better than the average of aligned sites = 5800 Number in coding regions = 5470 Number in noncoding regions = 330 Number of orfs with sites within 600 bp upstream = 268 Fraction of orfs with sites within 600 bp upstream = 0.0430453 Motif number 9 CCTCGGGATCTGGCGGGACTACCTCGACAAGA 1 17 1 TGGCGGGCAC 0.521446 -77 GACAAGACGACGAATGGCCCGGGGTGCAACGA 1 42 1 CGAATGGCGG 0.419339 -52 GAATGACGAACTACGAGGCTGGGACCTTGCTG 3 113 0 CTACGAGCGG 0.434394 -188 CGAGGAATCCCAGGTGGTCAGCTGTCGGTAAT 3 174 1 CAGGTGGCGC 0.879485 -127 TAACATCTGACGACGAGTCGAGATACACCCGC 6 41 1 CGACGAGCAG 0.866139 -79 CTCAACAGGGCGGCGCGCCCACCTTTCTCCAA 7 23 0 CGGCGCGCAC 0.739594 -249 ACATGCCCCACGAGTAGACCGCATTGCCGAGC 7 61 1 CGAGTAGCGC 0.94925 -211 TTCGAGATTACGAGGGCACGGCAGATCCAAAT 8 35 0 CGAGGGCCGC 0.787976 -43 AAGCGGCGCGCAAGGAGTCGGGCAATCGGTTG 14 24 0 CAAGGAGCGG 0.926434 -117 GAGGGCGCGACAGGTGGCCGGAGTGGG 15 6 0 CAGGTGGCGA 0.292244 -219 CCGAGTCGCTCCACGAGTCGGGCACGAGCGAC 15 87 0 CCACGAGCGG 0.676882 -138 CAGGTCCCGTCGGGAGGCCGAGGATCAGGGTC 15 161 0 CGGGAGGCAG 0.555013 -64 GACCTGAGCGCGGCGAGGCGGCGACCCATTCT 15 187 1 CGGCGAGCGC 0.95647 -38 ATGTCCCCGCCGAGGTGTCGGCAACGGCCGCC 17 84 1 CGAGGTGCGC 0.917747 -180 GACGATCGATCGAGGAGTCAACAGAA 17 248 1 CGAGGAGCAC 0.963607 -16 CGCTGGCGGCCGAGTAGCCTAGCTATC 18 36 1 CGAGTAGCAG 0.856508 -17 GCCCCCCTGTTAAGGAGCCCAC 20 1 0 TAAGGAGCAC 0.416569 -98 GGCTCCTTAACAGGGGGGCTGGTAGCGCAGGT 20 14 1 CAGGGGGCGG 0.943312 -85 TTCGTGTGCGTGAGTTGGCGGGCATGGTAACC 21 67 1 TGAGTTGCGG 0.187287 -234 TGGCACCAGCCGGGGCGGCGACAGGACCCACC 21 178 0 CGGGGCGCAC 0.893004 -123 TGCGACGACCCCGGGGGGCTGCGACCCATTAA 21 254 1 CCGGGGGCGC 0.918948 -47 CGCCGTTACACAAGTAGTCTAGT 29 2 0 CAAGTAGCAG 0.638205 -74 GGCGCCCTGTCGGGTAGCCAACCCCGGCGTGC 29 30 1 CGGGTAGCAC 0.900454 -46 AAGAATTCATCAAGGATCCGGCAAGGGTGCGG 32 29 1 CAAGGATCGC 0.377798 -32 GTCACGCCTACGAGGGGACTTCGCCGA 33 56 1 CGAGGGGCTC 0.803836 -17 ******* * ** Masking position 9 Map Score: 18.664 Number of sites scoring better than the average of aligned sites = 13723 Number in coding regions = 12717 Number in noncoding regions = 1006 Number of orfs with sites within 600 bp upstream = 718 Fraction of orfs with sites within 600 bp upstream = 0.115323 Motif number 10 GCCAGATCCCGAGGAAAGTG 1 1 0 GAGGAAAGTG 0.91399 -93 TGCTCGTCGGGAGCAAATGGCACCAGCCGG 21 197 0 GAGCAAATGG 0.91399 -104 CGACGATGCAGAGCAAAGCGATGGGGAGGA 22 39 1 GAGCAAAGCG 0.993318 -135 CGACGATGCAGAGCAAAGCGATGGGGAGGA 22 92 1 GAGCAAAGCG 0.993318 -82 CGACGATGCAGAGCAAAGCGATGGGGAGGA 22 145 1 GAGCAAAGCG 0.993318 -29 ********** Masking position 5 Map Score: 4.59766 Number of sites scoring better than the average of aligned sites = 12 Number in coding regions = 9 Number in noncoding regions = 3 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617 Motif number 11 CCGGCGCCAGCACAGTGGCATGGGACTTCG 3 45 1 CACAGTGGCA 0.97437 -256 ACCGAACCGGCACAGTGTCGCTCGGCAATG 7 82 0 CACAGTGTCG 0.96861 -190 CAGTACAGAGTGTCACAGCCGGACC 9 28 0 CAGAGTGTCA 0.950859 -15 TCGCTCCGGGCGCAGTGACAGGATAGGTTT 17 149 1 CGCAGTGACA 0.932964 -115 AAGGCTGTCGCAAAGTGTCAATACGTGGCG 23 34 1 CAAAGTGTCA 0.928853 -44 TTCGGGCCGTCACAGTGACCTTCAACATAG 26 204 0 CACAGTGACC 0.942982 -97 CCCGCGCAGTCACAGTGTCATCCTGGCATG 28 75 1 CACAGTGTCA 0.988289 -79 ********** Masking position 4 Map Score: 6.10768 Number of sites scoring better than the average of aligned sites = 54 Number in coding regions = 47 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 12 GGCGCGCCGCCCTGTTGAGCGCTTAACATG 7 36 1 CCTGTTGAGC 0.9782 -236 ACTCGTGGGGCATGTTAAGCGCTCAACAGG 7 46 0 CATGTTAAGC 0.96357 -226 ATGTTAGCTGCATGTTTAGCAGACTGGCTT 11 148 1 CATGTTTAGC 0.912802 -54 CGAACCGGCCAATGTTGAGCAACTCCGGCG 13 39 0 AATGTTGAGC 0.815403 -169 TACCAGCCCCCCTGTTAAGGAGCCCAC 20 8 0 CCTGTTAAGG 0.904789 -91 GGTCTAACCCCCTGATAAGCGCAGCATTTG 26 32 0 CCTGATAAGC 0.91097 -269 ********** Masking position 6 Map Score: 0.536984 Number of sites scoring better than the average of aligned sites = 64 Number in coding regions = 51 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 13 GCAGCGCGGTAGCAGAACCGGCCGGGACGTG 4 28 0 AGCAGAACGG 0.982859 -41 TATCCCGACCAGCAGAATCAGGCCCT 6 104 1 AGCAGAATAG 0.900979 -16 GCAGCAGAGTTCGCACGCCGTAT 10 3 1 AGCAGAGTCG 0.884213 -59 GCGAACAAAAAGCAAAATGGGCCCTCCGAAA 13 105 0 AGCAAAATGG 0.958317 -103 GTCGCTGCGAAGCAAAACTGGGGATTGCGCG 26 85 0 AGCAAAACGG 0.965233 -216 TGCGAGTCGAAGCAGAACCCGTGGCTGGGTC 26 124 0 AGCAGAACCG 0.967711 -177 GCACTGGTACATCAAAATCGGTGTGTCGGCG 27 69 0 ATCAAAATGG 0.748875 -47 ******** ** Masking position 6 Map Score: 1.48874 Number of sites scoring better than the average of aligned sites = 81 Number in coding regions = 73 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 14 CCCGACCTCGGCAACACTCAACCACCTACACAGC 13 134 0 GCACATCACA 0.988288 -74 TGCGCCCGGAGCGACACACATCCAGGGCGCGGCG 17 129 0 GCACAACACA 0.954166 -135 CGACCCACAGTCTGCCAGGGTGGTCGC 19 52 0 CCACATCTCA 0.915831 -17 GGGGGTTAGACCAACATTCATACAATTCGCCGGG 26 50 1 CCACATCACA 0.97783 -251 CCCGAGGCGTGCCAGACTCAAACAC 29 61 1 GCAGATCACA 0.97783 -15 GAGCGAATGCTAGATTCACGCA 31 9 1 GCAGATCACA 0.97783 -14 ** *** *** ** Masking position 6 Map Score: 0.972943 Number of sites scoring better than the average of aligned sites = 10 Number in coding regions = 4 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 15 ACGACTGCCGGCAGGGTCAG 2 1 1 ACGACTGCCG 0.525874 -36 TGAGGGTGATACGAATGACGAACTACGAGG 3 127 0 ACGAATGACG 0.845687 -174 CGCTAGCGCGACCACCGACCGTCGCGCGCC 3 280 0 ACCACCGACC 0.714616 -21 GTCAGATGTTACCAATCACGTAACCCAGCG 6 22 0 ACCAATCACG 0.827918 -98 GTGATTGGTAACATCTGACGACGAGTCGAG 6 33 1 ACATCTGACG 0.28336 -87 CGCCCGGGCGCCAACTCACGACCACATGTG 7 166 1 CCAACTCACG 0.865841 -106 ACCATACCGTCCGGCTGACGCCCAGCGGCC 7 211 1 CCGGCTGACG 0.866768 -61 CTTCATCAGACCCAATCACCG 13 197 1 CCCAATCACC 0.646349 -11 CCGGGCGTAGCCCGACGACGATGCACGCCG 14 91 0 CCCGACGACG 0.863627 -50 TGGACCTGCGCCGACCGACGATCGATCGAG 17 232 1 CCGACCGACG 0.981177 -32 TACCCTATCTTCGAACCACGCACCTGCGCT 20 37 0 TCGAACCACG 0.694778 -62 ACCATGCCCGCCAACTCACGCACACGAAAT 21 65 0 CCAACTCACG 0.865841 -236 GGCGACAGGACCCACCCACGGCCGGACGGT 21 164 0 CCCACCCACG 0.978615 -137 CCAGCTTCCACCAACCACGAATCCAGAGA 25 10 1 ACCAACCACG 0.905889 -28 TTGCTTCGCAGCGACCGACGCCGGACCCAG 26 101 1 GCGACCGACG 0.858906 -200 CGACGCCGGACCCAGCCACGGGTTCTGCTT 26 116 1 CCCAGCCACG 0.85561 -185 GCTGGCGGCCCCGTACGACGGATCATGGAG 26 277 1 CCGTACGACG 0.823431 -24 GGCCTGTCGCCCGAACCACTGTGCGAGCAG 28 105 0 CCGAACCACT 0.604278 -49 ********** Masking position 2 Map Score: 14.057 Number of sites scoring better than the average of aligned sites = 3531 Number in coding regions = 3233 Number in noncoding regions = 298 Number of orfs with sites within 600 bp upstream = 284 Fraction of orfs with sites within 600 bp upstream = 0.0456152