AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00190_mtub_reg_300.orf -o00190_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0248c 30 hypothetical protein Rv0248c #2 Rv0249c 79 hypothetical protein Rv0249c #3 Rv0250c 144 hypothetical protein Rv0250c #4 hsp 213 hsp #5 kdpA 300 kdpA #6 argS 300 argS #7 thrB 217 thrB #8 rho 256 rho #9 rpmE 150 rpmE #10 prfA 89 prfA #11 rfe 83 rfe #12 Rv1303 256 hypothetical protein Rv1303 #13 atpE 48 atpE #14 atpF 30 atpF #15 atpA 44 atpA #16 atpD 39 atpD #17 ctaB 300 ctaB #18 frdA 300 frdA #19 ctaE 157 ctaE #20 ctaC 245 ctaC #21 Rv2983 118 hypothetical protein Rv2983 #22 ppk 91 ppk #23 ctaD 214 ctaD #24 nuoA 300 nuoA #25 nuoH 115 nuoH #26 sdhC 236 sdhC #27 sdhA 128 sdhA #28 ppa 137 ppa Motif number 1 TTCGCGATACGGCATGATCCGG 3 3 1 CGCGATACGG 0.428184 -142 GGACCCATCGGCCCGGCCGGATCATGCCGT 3 19 0 GCCCGGCCGG 0.968685 -126 TGGCATGATCCGGCGGACCCATCGGCCCGG 3 33 0 CGGCGGACCC 0.819147 -112 TGATCTGTAACACCGCCAGCCCAGGGAGCA 3 121 1 CACCGCCAGC 0.898095 -24 GATCACACCTGGCGACCGGCTGTGTGACAG 4 75 1 GGCGACCGGC 0.516004 -139 CCTCGGCGTTCACCGGAAGCGAACACTGTC 4 100 0 CACCGGAAGC 0.709943 -114 AAGAACCTGAGTCGACCACGCTTAAGTTCC 4 131 0 GTCGACCACG 0.685332 -83 CCGGCGCGTTGCCGGCCCGCTATACCAAGA 4 157 0 GCCGGCCCGC 0.554424 -57 AGTTAGCTGTGTCCGGCGCGTTGCCGGCCC 4 169 0 GTCCGGCGCG 0.957198 -45 GCATCAGATAGCCCAGCAGGATGGTAGT 5 9 0 GCCCAGCAGG 0.778899 -292 TGTGCACCGGCATCGCAGCGCATCAGATAG 5 28 0 CATCGCAGCG 0.619391 -273 AGGCCATCACGGTCAGCACCAACACCAAGT 5 83 0 GGTCAGCACC 0.665787 -218 GTCGAACTCACGCGAGCGCCGGCCGAATGG 5 187 1 CGCGAGCGCC 0.656617 -114 ACGCCATTAGCGCCACCGCGATCACCAACC 5 244 0 CGCCACCGCG 0.934351 -57 CCGGAAACAGCAGCGCCGCGAATAGGAACG 5 271 0 CAGCGCCGCG 0.712734 -30 CCACCCGCGAGGGCGGCCGCATAGTTGGCT 6 48 0 GGGCGGCCGC 0.880743 -253 ATGTGATCGGCGCCACCCGCGAGGGCGGCC 6 60 0 CGCCACCCGC 0.954238 -241 ACCCTTGTGCCCCCGGCAGGATTCGAACCT 6 118 1 CCCCGGCAGG 0.954862 -183 CGGCCTTCTGCTCCGGAGGCAGACGCTCTA 6 149 1 CTCCGGAGGC 0.885875 -152 ACGTGTCGTCGTGCGCCCCCGTAGCTCAGG 6 182 0 GTGCGCCCCC 0.777376 -119 CGCTACTCTGGCGGGGCCCCATGGCGCAAC 6 210 0 GCGGGGCCCC 0.59147 -91 ACCCACTGACCACCGCAACGGATTCGAAGC 6 250 1 CACCGCAACG 0.807617 -51 CCGCACCCGGCTCCGCCGCGCTTGCGATCG 7 14 0 CTCCGCCGCG 0.973043 -204 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 7 26 0 CGCCGCACCC 0.980255 -192 GGGTGCGGCGGGTCGGCACGGTTTGGATTG 7 36 1 GGTCGGCACG 0.904315 -182 CCGCGCTTGCGATCGCCACCCAATCCAAAC 7 56 0 GATCGCCACC 0.661675 -162 CCGCACCCGGCTCCGCCGCGCTTGCGATCG 7 71 0 CTCCGCCGCG 0.973043 -147 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 7 83 0 CGCCGCACCC 0.980255 -135 GGGTGCGGCGGGTCGGCACGGTTTGGATTG 7 93 1 GGTCGGCACG 0.904315 -125 CCGCGCTTGCGATCGCCACCCAATCCAAAC 7 113 0 GATCGCCACC 0.661675 -105 CCGCACCCGGCTCCGCCGCGCTTGCGATCG 7 128 0 CTCCGCCGCG 0.973043 -90 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 7 140 0 CGCCGCACCC 0.980255 -78 GGGTGCGGCGGGTCGGCACGGTTTGGATTG 7 150 1 GGTCGGCACG 0.904315 -68 CCGCGCTTGCGATCGCCACCCAATCCAAAC 7 170 0 GATCGCCACC 0.661675 -48 CCGCACCCGGCTCCGCCGCGCTTGCGATCG 7 185 0 CTCCGCCGCG 0.973043 -33 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 7 197 0 CGCCGCACCC 0.980255 -21 GGGTGCGGCGGGTCGGCACGC 7 207 1 GGTCGGCACG 0.904315 -11 GCAAGCAAACCCCCGCAACCTTGCGGA 8 8 0 CCCCGCAACC 0.93081 -249 CCCGCTTCCTGGCCGGAAGCAAGCAAACCC 8 26 0 GGCCGGAAGC 0.924486 -231 AGCGGGCTATCCTCGGAGCCGTCCAGCAAT 8 50 1 CCTCGGAGCC 0.801449 -207 CGCCGCTGATGGCGATCACCGTTGCAAAGT 8 155 1 GGCGATCACC 0.431967 -102 ACGTGATCAGCGGGGGAAGGAAAGGAAATC 8 236 1 CGGGGGAAGG 0.553153 -21 CGGCGAGACGGCTCGCCGGGAATGTCCGCA 9 13 1 GCTCGCCGGG 0.854787 -138 CGCCGGGAATGTCCGCACGCATCTCGGTGT 9 26 1 GTCCGCACGC 0.889567 -125 GTGCCGAGAACCTGGTCCGGTTCCAACTCG 9 96 0 CCTGGTCCGG 0.41823 -55 GGACCAGGTTCTCGGCACGCCACGACGGGC 9 108 1 CTCGGCACGC 0.874617 -43 CGCCACGACGGGCGGCCACCGATCACAGAG 9 125 1 GGCGGCCACC 0.508774 -26 ACCTTCTTCCCGCGAGCGCGGACCCTAACG 10 66 0 CGCGAGCGCG 0.63118 -24 CTCGCGGGTTGCCGGCCCCCGGCCCATCGG 12 90 1 GCCGGCCCCC 0.527891 -167 GTCGTGAATCGGCGCGACCGGATACGCATC 12 119 0 GGCGCGACCG 0.607209 -138 GTATCGCAGTCGTCGCACCGGAATCACCCA 12 169 0 CGTCGCACCG 0.914303 -88 TCGACTGATCGGTGGCCCGCCGAGCGTATC 12 194 0 GGTGGCCCGC 0.555224 -63 GTTTCCGCTCCATCAGCCCGGAATTGAGGT 12 231 1 CATCAGCCCG 0.425319 -26 ACAATTTTCACACCAGCCCGATGAAAATCG 17 134 0 CACCAGCCCG 0.775644 -167 CAGCCCGAACCGCGGTCAGGACAATTTTCA 17 154 0 CGCGGTCAGG 0.529196 -147 CGGCACCGCTCGCCAGCCCGAACCGCGGTC 17 167 0 CGCCAGCCCG 0.956448 -134 ATTCACACGACTTCGCCGGCATATCGGCAC 17 191 0 CTTCGCCGGC 0.856741 -110 GAATCGCAGCCGCGCGCAGCTTCTACTACG 17 266 0 CGCGCGCAGC 0.543444 -35 TCAACCATGTGCCCGCAGGGCGCTTTTTGC 18 97 0 GCCCGCAGGG 0.93471 -204 CATGGTTGACGGCGATCACCACATCGAGCG 18 118 1 GGCGATCACC 0.431967 -183 GCAAGGCCTTCGTCGTCGCGCTCGATGTGG 18 136 0 CGTCGTCGCG 0.784386 -165 AACTTGAGGTCGTCGTAGGCAAGGCCTTCG 18 154 0 CGTCGTAGGC 0.528412 -147 TGCCGGATTTCGCGGCAGCCGCAGGAAAAC 18 181 0 CGCGGCAGCC 0.791493 -120 GATTCGACACGACGGCAAGGTGTTGAAGGA 18 244 1 GACGGCAAGG 0.626471 -57 CGAGCACAGCGGCGATCACGAAGCGTGAAC 18 274 1 GGCGATCACG 0.420808 -27 CAAACGGCCGGGCGACACGCGGAACTGACT 19 80 1 GGCGACACGC 0.802294 -78 GTGGGGCATACTGGGGCGCC 20 1 0 CTGGGGCGCC 0.684195 -245 GCCTGGTCGTCGCGACCCGCCGGACGAGGC 20 49 0 CGCGACCCGC 0.684804 -197 ACCAGGCAGTCGCCCGCGGGGCTGATGGCG 20 72 1 CGCCCGCGGG 0.851489 -174 TGAGGAGCCGCGCCATCAGCCCCGCGGGCG 20 82 0 CGCCATCAGC 0.623553 -164 TGGCGCGGCTCCTCAGCGGGCCGTTTCGGC 20 97 1 CCTCAGCGGG 0.635785 -149 TTTCGGCCCGCATCGTCGCCCGCGCGGGCG 20 120 1 CATCGTCGCC 0.392523 -126 TCGTCGCCCGCGCGGGCGGCGTGGTCTACG 20 132 1 CGCGGGCGGC 0.569742 -114 CGATGGTTCTCGCCGCAGCCGGTGCTATCC 20 190 1 CGCCGCAGCC 0.979093 -56 ACACACTAATCTGCGCCGCGGTTGCCGTCG 21 15 1 CTGCGCCGCG 0.812711 -104 CGCGGTTGCCGTCGGGACCGTGCCTGGGCC 21 31 1 GTCGGGACCG 0.848188 -88 GTGCCTGGGCCCCGGCCACGACCGTGGCGG 21 50 1 CCCGGCCACG 0.505469 -69 CGACGGCATTGCCGCCACGGTCGTGGCCGG 21 61 0 GCCGCCACGG 0.427274 -58 GCCGGCGTTGCCCCGTCCCGG 22 2 0 CCCCGTCCCG 0.904608 -90 CCCCTGGATGCCTCGCCGGCGTTGCCCCGT 22 16 0 CCTCGCCGGC 0.88308 -76 TTGGTCTGCCGTTCACCCCCTGGATGCCTC 22 32 0 GTTCACCCCC 0.567395 -60 GTTGCCAGCACTCGGCAGGCATCCGTTCGC 22 64 0 CTCGGCAGGC 0.871497 -28 CCTGCCGAGTGCTGGCAACCCCACCCA 22 75 1 GCTGGCAACC 0.589577 -17 AACGCGTGCTGTCCGGCGGG 23 1 0 GTCCGGCGGG 0.944096 -214 GACGGTAGCACTCGGCCAGCCGTCGACCCC 23 32 1 CTCGGCCAGC 0.893175 -183 TCGGCCAGCCGTCGACCCCGATTCGCGCGG 23 43 1 GTCGACCCCG 0.802255 -172 CAACGCTTTCCGCCCGCGCGAATCGGGGTC 23 56 0 CGCCCGCGCG 0.876325 -159 TGCCAGACTCCGCCGGCGGGCCGTTGCAGA 23 87 0 CGCCGGCGGG 0.978537 -128 CGATCAGGCTGGCGGCAGGCCTGGTCCTAC 23 130 0 GGCGGCAGGC 0.843082 -85 CAAACATCCAGCCCGGACCGGGCCAAAACC 23 185 0 GCCCGGACCG 0.937964 -30 CATACAATTCGCCGGGACGCGCAATCCCCA 24 68 1 GCCGGGACGC 0.884552 -233 CCCAGTTTTGCTTCGCAGCGACCGACGCCG 24 94 1 CTTCGCAGCG 0.740262 -207 CAGCGACCGACGCCGGACCCAGCCACGGGT 24 109 1 CGCCGGACCC 0.974701 -192 TATGCACCAGCCTGACCCCGGGAATGTGGG 24 159 1 CCTGACCCCG 0.508437 -142 TCACTGTGACGGCCCGAAGCCCCGGTTCGT 24 216 1 GGCCCGAAGC 0.48279 -85 GTCACGGCAGCCCGGTCACCGCCCGGCCGC 24 244 1 CCCGGTCACC 0.492917 -57 CCGCCAGCGCGGCGGCCGGGCGGTGACCGG 24 255 0 GGCGGCCGGG 0.500603 -46 CCGCCGCGCTGGCGGCCCCGTACGACGGAT 24 270 1 GGCGGCCCCG 0.518203 -31 CTCCCCTTGCCGCGAGCGCGCGTGTTCCCC 25 15 1 CGCGAGCGCG 0.63118 -101 GCGCGTGTTCCCCCGCAAGCGGGAGGTGCC 25 32 1 CCCCGCAAGC 0.910414 -84 TGATGTACCAGTGCGGACCCTCGCGCAAGG 25 86 1 GTGCGGACCC 0.492259 -30 TCGGCCCATCGACGAGCGGGGTTGCCGA 26 9 0 GACGAGCGGG 0.57314 -228 TCGAGCTTAACTTGGCCAGGTTGCCCGCGG 26 97 0 CTTGGCCAGG 0.680749 -140 CCGCCGCCCGCGCGAGACGGTTGTCGCCGT 26 184 0 CGCGAGACGG 0.802213 -53 TCGCGCGGGCGGCGGCCACCTCGGACCCTG 26 199 1 GGCGGCCACC 0.508774 -38 AAGGCCCGGAAGGAGCACATGAT 27 4 1 GCCCGGAAGG 0.860018 -125 GCCACCTCTCCCCCGCAAGCGGGCGGTACC 27 37 1 CCCCGCAAGC 0.910414 -92 CCCGCAAGCGGGCGGTACCCCCACCTCATC 27 48 1 GGCGGTACCC 0.784711 -81 GCGACGAGGGGGCCGCAGCGATGAGGTGGG 27 67 0 GGCCGCAGCG 0.973411 -62 GTGGGGGCACCCCCAGCCGCGAAGCGACGA 27 90 0 CCCCAGCCGC 0.893252 -39 CGCCGCCGCCGACGATGCAG 27 119 0 CGCCGCCGCC 0.856798 -10 TGGCAGCGTCGCCCGGCCGGTTCGGCAGAA 28 36 0 GCCCGGCCGG 0.968685 -102 GAGCCGGTACCGTGGCAGCGTCGCCCGGCC 28 48 0 CGTGGCAGCG 0.749653 -90 GGACACCCTAGTCGAGCCGGTACCGTGGCA 28 61 0 GTCGAGCCGG 0.707456 -77 ********** Masking position 7 Map Score: 165.721 Number of sites scoring better than the average of aligned sites = 171757 Number in coding regions = 161387 Number in noncoding regions = 10370 Number of orfs with sites within 600 bp upstream = 1817 Fraction of orfs with sites within 600 bp upstream = 0.291841 Motif number 2 ACAACCGAGCCCCCCAGAAAAAGGGG 2 6 1 CGAGCCCCCA 0.70816 -74 ATCCGGCGGACCCATCGGCCCGGCCGGATCA 3 25 0 CCCACGGCCC 0.931396 -120 GCCGAGTAGACCCAACGACTCCGTCCGTCGA 3 67 1 CCCACGACTC 0.732328 -78 CGGCGCGTTGCCGGCCCGCTATACCAAGAAC 4 155 0 CCGGCCGCTA 0.580222 -59 GCACAAGAATCGAGAGGACTCACATGGCCGA 5 53 1 CGAGGGACTC 0.608011 -248 ACGGATCATTCGCCGCGACGAAATCGGGGAA 5 150 1 CGCCCGACGA 0.936839 -151 GTCGAACTCACGCGAGCGCCGGCCGAATGGC 5 187 1 CGCGGCGCCG 0.926448 -114 ACGCCATTAGCGCCACCGCGATCACCAACCC 5 243 0 CGCCCCGCGA 0.959617 -58 TTCCTATTCGCGGCGCTGCTGTTTCCGGAGA 5 273 1 CGGCCTGCTG 0.610994 -28 AATTTGAGAGCGAGACCACGAAGCCAACTAT 6 27 1 CGAGCCACGA 0.848353 -274 CGGCGCCACCCGCGAGGGCGGCCGCATAGTT 6 52 0 CGCGGGGCGG 0.980518 -249 CGGCAGGATTCGAACCTGCGGCCTTCTGCTC 6 131 1 CGAACTGCGG 0.848252 -170 AGTAGCGCATCGCGGCTACCCACTGACCACC 6 233 1 CGCGCTACCC 0.863422 -68 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 18 0 CCCGCTCCGC 0.918933 -200 CAAACCGTGCCGACCCGCCGCACCCGGCTCC 7 30 0 CGACCGCCGC 0.948325 -188 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 75 0 CCCGCTCCGC 0.918933 -143 CAAACCGTGCCGACCCGCCGCACCCGGCTCC 7 87 0 CGACCGCCGC 0.948325 -131 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 132 0 CCCGCTCCGC 0.918933 -86 CAAACCGTGCCGACCCGCCGCACCCGGCTCC 7 144 0 CGACCGCCGC 0.948325 -74 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 189 0 CCCGCTCCGC 0.918933 -29 GCGTGCCGACCCGCCGCACCCGGCTCC 7 201 0 CGACCGCCGC 0.948325 -17 GCCAAATCGCCGAGTGCGCCAATCATCGACT 8 182 0 CGAGGCGCCA 0.628123 -75 TCCGGCGAGACGGCTCGCCGGGAATG 9 6 1 CGAGCGGCTC 0.921674 -145 GTTCTCGGCACGCCACGACGGGCGGCCACCG 9 115 1 CGCCCGACGG 0.976637 -36 GACCCTAACGCGAACCGACGCCCGTCCTGTA 10 45 0 CGAACGACGC 0.905314 -45 ACCTTCTTCCCGCGAGCGCGGACCCTAACGC 10 65 0 CGCGGCGCGG 0.971078 -25 TCGCGGGTTGCCGGCCCCCGGCCCATCGGAT 12 91 1 CCGGCCCCGG 0.512873 -166 GGTCGTGAATCGGCGCGACCGGATACGCATC 12 119 0 CGGCCGACCG 0.82017 -138 CGGAAACCACCCGATCGACTGATCGGTGGCC 12 207 0 CCGACGACTG 0.477139 -50 ACCAGCACGAATCTGCTGTGCACAGTGC 17 8 1 CGAACTGCTG 0.508099 -293 GCTCGCCAGCCCGAACCGCGGTCAGGACAAT 17 159 0 CCGACCGCGG 0.856978 -142 GCCGGCATATCGGCACCGCTCGCCAGCCCGA 17 176 0 CGGCCCGCTC 0.815643 -125 TCGTGTGAATCGACCCTGCGGCTCTGCTGCC 17 211 1 CGACCTGCGG 0.895161 -90 CCTCGGGAATCGCAGCCGCGCGCAGCTTCTA 17 271 0 CGCACCGCGC 0.977161 -30 CGACCATAGTCCCGCCTCCTCCGGTGCTGGC 18 44 0 CCCGCTCCTC 0.676708 -257 GGACTATGGTCGCGACCACTACGCACTTCCC 18 63 1 CGCGCCACTA 0.742556 -238 AACCATGTGCCCGCAGGGCGCTTTTTGCTTC 18 94 0 CCGCGGGCGC 0.861763 -207 CCACATCGAGCGCGACGACGAAGGCCTTGCC 18 136 1 CGCGCGACGA 0.960604 -165 ACGCACGATTCGACACGACGGCAAGGTGTTG 18 238 1 CGACCGACGG 0.937394 -63 ATCAACCAACCCCAACCGCGCCCTGAACACG 19 31 1 CCCACCGCGC 0.959588 -127 CTTGCGCTAACCAAACGGCCGGGCGACACGC 19 69 1 CCAACGGCCG 0.824247 -89 CTGGTCGTCGCGACCCGCCGGACGAGGCATC 20 46 0 CGACCGCCGG 0.937041 -200 CGCCATCAGCCCCGCGGGCGACTGCCTGGTC 20 71 0 CCCGGGGCGA 0.917651 -175 GGGCTGATGGCGCGGCTCCTCAGCGGGCCGT 20 90 1 CGCGCTCCTC 0.790425 -156 CGATGCGGGCCGAAACGGCCCGCTGAGGAGC 20 104 0 CGAACGGCCC 0.897528 -142 CGTTTCGGCCCGCATCGTCGCCCGCGCGGGC 20 118 1 CGCACGTCGC 0.61059 -128 CATCGTCGCCCGCGCGGGCGGCGTGGTCTAC 20 130 1 CGCGGGGCGG 0.973945 -116 CGGTGCTATCCCAGTCGGCCCAGCTTGTGAT 20 209 1 CCAGCGGCCC 0.928371 -37 GTGGCCGGGGCCCAGGCACGGTCCCGACGGC 21 38 0 CCCAGCACGG 0.751408 -81 GTGCCTGGGCCCCGGCCACGACCGTGGCGGC 21 50 1 CCCGCCACGA 0.896602 -69 TCGGGGTCGACGGCTGGCCGAGTGCTACCGT 23 33 0 CGGCGGCCGA 0.66646 -182 GACCCCGATTCGCGCGGGCGGAAAGCGTTGG 23 56 1 CGCGGGGCGG 0.973945 -159 TCTGCAACGGCCCGCCGGCGGAGTCTGGCAT 23 87 1 CCCGCGGCGG 0.98172 -128 TCATACAATTCGCCGGGACGCGCAATCCCCA 24 67 1 CGCCGGACGC 0.934534 -234 AGTTTTGCTTCGCAGCGACCGACGCCGGACC 24 97 1 CGCACGACCG 0.90429 -204 CGACGCCGGACCCAGCCACGGGTTCTGCTTC 24 116 1 CCCACCACGG 0.901682 -185 AACATAGTCGCGCAACGGCCACCCCACATTC 24 180 0 CGCACGGCCA 0.893361 -121 TGTGACGGCCCGAAGCCCCGGTTCGTCACGG 24 220 1 CGAACCCCGG 0.874951 -81 CGGGCGGTGACCGGGCTGCCGTGACGAACCG 24 238 0 CCGGCTGCCG 0.460676 -63 GGGCCGCCAGCGCGGCGGCCGGGCGGTGACC 24 257 0 CGCGCGGCCG 0.981014 -44 ATCCGTCGTACGGGGCCGCCAGCGCGGCGGC 24 269 0 CGGGCCGCCA 0.82891 -32 CTCCCCTTGCCGCGAGCGCGCGTGTTCCCCC 25 15 1 CGCGGCGCGC 0.974087 -101 CGGGAGGTGCCCCCAGTACGCCGACACACCG 25 51 1 CCCCGTACGC 0.657537 -65 ACTCCTTGCGCGAGGGTCCGCACTGGTACAT 25 88 0 CGAGGTCCGC 0.70681 -28 TCTTAGTCGGCCCATCGACGAGCGGGGTTGC 26 14 0 CCCACGACGA 0.835401 -223 TCGGACTGTTCGACACCGCGGGCAACCTGGC 26 82 1 CGACCCGCGG 0.958535 -155 ACAACCGTCTCGCGCGGGCGGCGGCCACCTC 26 190 1 CGCGGGGCGG 0.973945 -47 CGCGAAGCGACGAGGGGGCCGCAGCGATGAG 27 72 0 CGAGGGGCCG 0.872434 -57 TGGGGGCACCCCCAGCCGCGAAGCGACGAGG 27 88 0 CCCACCGCGA 0.890492 -41 CGCCGCCGCCGACGATGCAGT 27 118 0 CGCCCCGCCG 0.953996 -11 GCCGAACCGGCCGGGCGACGCTGCCACGGTA 28 40 1 CCGGCGACGC 0.931684 -98 GCCACGGTACCGGCTCGACTAGGGTGTCCAC 28 62 1 CGGCCGACTA 0.486049 -76 TGCCCGTTGTCCCATGCACTCTGATCTGAAG 28 107 1 CCCAGCACTC 0.366211 -31 **** ****** Masking position 9 Map Score: 132.971 Number of sites scoring better than the average of aligned sites = 63085 Number in coding regions = 58654 Number in noncoding regions = 4431 Number of orfs with sites within 600 bp upstream = 1413 Fraction of orfs with sites within 600 bp upstream = 0.226951 Motif number 3 TCCGGCCGGGCCGATGGGTCCGCCGGATCATGCC 3 28 1 CCGTGGCGCC 0.843321 -117 ACACCGCCAGCCCAGGGAGCACCCA 3 130 1 CCCGGGCCCC 0.904064 -15 GGTATAGCGGGCCGGCAACGCGCCGGACACAGCT 4 161 1 GCCGCAGGCC 0.63618 -53 AGCAGGCAAAGCCCGGCAAAGGCCATCACGGTCA 5 98 0 GCCGGCAGCC 0.784776 -203 TCACGCGAGCGCCGGCCGAATGGCGATGACTACG 5 194 1 GCCGCCAGGC 0.569454 -107 TAGCGCCACCGCGATCACCAACCCGACGATGTTG 5 233 0 GCGTCAACCC 0.709046 -68 CAGCAGCGCCGCGAATAGGAACGCCATTAGCGCC 5 260 0 GCGATAACGC 0.275614 -41 GGCGCCACCCGCGAGGGCGGCCGCATAGTTGGCT 6 48 0 GCGGGGGCGC 0.502308 -253 CATTGTTGTAGCCATGCGTGAGGCTAGATCAACC 6 87 1 GCCTGCGGGC 0.745648 -214 GCCTTCTGCTCCGGAGGCAGACGCTCTATCCCCT 6 151 1 CCGAGGGCGC 0.800292 -150 ACACGTTGCGCCATGGGGCCCCGCCAGAGTAGCG 6 206 1 CCAGGGCCGC 0.83992 -95 TCGCGGCTACCCACTGACCACCGCAACGGATTCG 6 242 1 CCATGAACGC 0.254775 -59 TGGCGATCGCAAGCGCGGCGGAGCCG 7 3 1 GCGTCGACGC 0.555198 -215 CCAATCCAAACCGTGCCGACCCGCCGCACCCGGC 7 33 0 CCGGCCCCGC 0.935905 -185 GGATTGGGTGGCGATCGCAAGCGCGGCGGAGCCG 7 60 1 GCGTCGACGC 0.555198 -158 CCAATCCAAACCGTGCCGACCCGCCGCACCCGGC 7 90 0 CCGGCCCCGC 0.935905 -128 GGATTGGGTGGCGATCGCAAGCGCGGCGGAGCCG 7 117 1 GCGTCGACGC 0.555198 -101 CCAATCCAAACCGTGCCGACCCGCCGCACCCGGC 7 147 0 CCGGCCCCGC 0.935905 -71 GGATTGGGTGGCGATCGCAAGCGCGGCGGAGCCG 7 174 1 GCGTCGACGC 0.555198 -44 GCGTGCCGACCCGCCGCACCCGGC 7 204 0 GCGGCCCCGC 0.520973 -14 CTGGCCGGAAGCAAGCAAACCCCCGCAACCTTGC 8 14 0 GCAGCACCCC 0.69426 -243 CTTGCTTCCGGCCAGGAAGCGGGCTATCCTCGGA 8 33 1 GCCGGACGGC 0.697354 -224 CGCAGCATCTGCATACGTACTGCCTTGCCGCTAG 8 80 1 GCAACGCGCC 0.49692 -177 ATCGCCATCAGCGGCGAATACGGCGAACCTCGTC 8 137 0 GCGCGAAGGC 0.688408 -120 CATCGACTTTGCAACGGTGATCGCCATCAGCGGC 8 156 0 GCACGGACGC 0.665466 -101 CGTTGCAAAGTCGATGATTGGCGCACTCGGCGAT 8 174 1 TCGTGAGCGC 0.283563 -83 GACATTCCCGGCGAGCCGTCTCGCCGGA 9 5 0 GCGGCCCCGC 0.83177 -146 TGGGGTGATAGCGGTTGACCTGGCATAATCGATG 9 57 1 GCGTTGCGGC 0.633398 -94 TGATCGGTGGCCGCCCGTCGTGGCGTGCCGAGAA 9 116 0 CCGCCGGGGC 0.759506 -35 GGACCCTAACGCGAACCGACGCCCGTCCTGTACC 10 43 0 GCGACCCCCC 0.881451 -47 CCTTCTTCCCGCGAGCGCGGACCCTAACGCGAAC 10 61 0 GCGGCGGCCC 0.910925 -29 CCGCCGAACGTGCACGCACTGCGAAGA 11 4 1 CCGACGCCGC 0.873563 -80 TGCACGCACTGCGAAGATTCGGCCAATTGTTCGC 11 21 1 GCGAGACGCC 0.679806 -63 GTGGTACGGTGCGGCTAGAACCCCGAAGGAGACC 12 57 1 GCGCTAACCC 0.309903 -200 CTCGCGGGTTGCCGGCCCCCGGCCCATCGGATGC 12 90 1 GCCGCCCGCC 0.853277 -167 CCCATCGGATGCGTATCCGGTCGCGCCGATTCAC 12 112 1 GCGATCGCGC 0.480311 -145 TCGGTGGCCCGCCGAGCGTATCGCAGTCGTCGCA 12 182 0 GCCAGCACGC 0.711339 -75 CGGGTGGTTTCCGCTCCATCAGCCCGGAATTGAG 12 225 1 CCGTCCCGCC 0.773539 -32 AATGCCACGAGCCGATAGTAGGGCGAATGTGCAC 17 35 0 GCCATAAGGC 0.0962951 -266 CGAAGACCAACCGTTGCTAGCCGCAATGCCACGA 17 59 0 CCGTGCGCGC 0.840226 -242 GTCTTCGGGCCCAATCCTTAGGGCGTCACACTGA 17 86 1 CCATCCAGGC 0.272239 -215 TCACACCAGCCCGATGAAAATCGCTATCTGGGAT 17 123 0 CCGTGAACGC 0.667824 -178 CATATCGGCACCGCTCGCCAGCCCGAACCGCGGT 17 168 0 CCGTCGACCC 0.786034 -133 GGCGAGCGGTGCCGATATGCCGGCGAAGTCGTGT 17 183 1 GCCATACGGC 0.194642 -118 AATCGACCCTGCGGCTCTGCTGCCACAGTTACCC 17 218 1 GCGCTCCGCC 0.559175 -83 TCCTCGGGAATCGCAGCCGCGCGCAGCTTCTACT 17 269 0 TCGAGCCCGC 0.478871 -32 TCACGTGCCAGCACCGGAGGAGGCGGGACTATGG 18 38 1 GCACGGGGGC 0.580893 -263 CGTAGTGGTCGCGACCATAGTCCCGCCTCCTCCG 18 52 0 GCGCCAGCCC 0.735829 -249 CGTAGGCAAGGCCTTCGTCGTCGCGCTCGATGTG 18 137 0 GCCTCGGCGC 0.535975 -164 TCGTGTCGAATCGTGCGTACCCGCATGGATCCGT 18 222 0 TCGGCGCCGC 0.8126 -79 CGCGCTGGTTCACGCTTCGTGATCG 18 286 0 GCGTGGCCGC 0.932816 -15 GCGCTGATGGTCCCATGAGGATCA 19 1 1 GCGTGAGCCC 0.777613 -157 TGAGGATCAACCAACCCCAACCGCGCCCTGAACA 19 26 1 CCACCCACGC 0.369514 -132 TAACCAAACGGCCGGGCGACACGCGGAACTGACT 19 76 1 GCCGGCCCGC 0.532995 -82 TCGTCGCGACCCGCCGGACGAGGCATCCACAAGA 20 39 0 CCGCGGGGGC 0.783604 -207 GTCGCGACGACCAGGCAGTCGCCCGCGGGGCTGA 20 63 1 CCAGCACCCC 0.502245 -183 GCAGTCGCCCGCGGGGCTGATGGCGCGGCTCCTC 20 77 1 GCGGGCAGGC 0.524805 -169 GGCCGTTTCGGCCCGCATCGTCGCCCGCGCGGGC 20 115 1 GCCGCAGCGC 0.481887 -131 ATACTACGCAGCGTAGACCACGCCGCCCGCGCGG 20 139 0 GCGAGAAGCC 0.477254 -107 TCTGAGTTAGCCGATGGTTCTCGCCGCAGCCGGT 20 179 1 CCGTGGCCGC 0.935095 -67 TCTCGCCGCAGCCGGTGCTATCCCAGTCGGCCCA 20 197 1 GCCGTGACCC 0.608893 -49 AGGCACGGTCCCGACGGCAACCGCGGCGCAGATT 21 22 0 CCGCGGACGC 0.839785 -97 TCGGGACCGTGCCTGGGCCCCGGCCACGACCGTG 21 42 1 GCCGGGCGGC 0.498577 -77 GAAGTGTGCCGCGTGGATCGACGCTGGCAGGATG 21 90 1 GCGGGAGCGC 0.501141 -29 TGGATGCCTCGCCGGCGTTGCCCCGTCCCGG 22 8 0 GCCGCGGCCC 0.90618 -84 GCATCCGTTCGCCGTTGGTCTGCCGTTCACCCCC 22 42 0 GCCTTGCGCC 0.485561 -50 ACCGTCGAACGCGTGCTGTCCGGCGGG 23 4 0 GCGGCTCGGC 0.367404 -211 TTCGACGGTAGCACTCGGCCAGCCGTCGACCCCG 23 29 1 GCATCGCGCC 0.646163 -186 GTTTGTAGGACCAGGCCTGCCGCCAGCCTGATCG 23 126 1 CCAGCCCGCC 0.554521 -89 AGGCATCTTAGCCCTCGATCAGGCTGGCGGCAGG 23 141 0 GCCTCGCGGC 0.879583 -74 CCAGCCCGGACCGGGCCAAAACCCAGTATTGAGA 23 174 0 CCGGCCACCC 0.849303 -41 TTGGTCTAACCCCCTGATAAGCGCAGCATTTGTT 24 30 0 CCCTGAACGC 0.478176 -271 TTCATACAATTCGCCGGGACGCGCAATCCCCAGT 24 66 1 TCGCGGCCGC 0.669661 -235 TTCGCAGCGACCGACGCCGGACCCAGCCACGGGT 24 105 1 CCGCGCGCCC 0.756083 -196 CCTGTGCGAGTCGAAGCAGAACCCGTGGCTGGGT 24 125 0 TCGAGCACCC 0.208992 -176 CACCCCACATTCCCGGGGTCAGGCTGGTGCATAC 24 158 0 TCCGGGCGGC 0.565028 -143 ACATAGTCGCGCAACGGCCACCCCACATTCCCGG 24 176 0 GCACGGACCC 0.581165 -125 CCGTGACGAACCGGGGCTTCGGGCCGTCACAGTG 24 217 0 CCGGGCCGGC 0.925081 -84 GTCACGGCAGCCCGGTCACCGCCCGGCCGCCGCG 24 244 1 CCCGTCCCCC 0.535174 -57 CCCGGCCGCCGCGCTGGCGGCCCCGTACGACGGA 24 265 1 GCGTGGGCCC 0.898424 -36 CGCGCTCGCGGCAAGGGGAGACGC 25 1 0 GCAGGGGCGC 0.849676 -115 CCTCCCGCTTGCGGGGGAACACGCGCGCTCGCGG 25 24 0 GCGGGGCCGC 0.832691 -92 AGCGGGAGGTGCCCCCAGTACGCCGACACACCGA 25 49 1 GCCCCAAGCC 0.374357 -67 ATGTACCAGTGCGGACCCTCGCGCAAGGAGTGGC 25 88 1 GCGACCCCGC 0.916434 -28 ACTAAGAAAAGCCAGCCTAACCCCGGATCCACAC 26 38 1 GCCGCCACCC 0.850982 -199 GTTCGACACCGCGGGCAACCTGGCCAAGTTAAGC 26 89 1 GCGGCACGGC 0.672711 -148 GTTGTATTCACCGCTGGCAAACCCCTTAAAAGCA 26 152 0 CCGTGGACCC 0.80557 -85 CAACCGTCTCGCGCGGGCGGCGGCCACCTCGGAC 26 191 1 GCGGGGGGGC 0.506686 -46 CCCGGAAGGAGCACATGATCACGCCACCTCTCCC 27 15 1 GCAATGCCGC 0.337596 -114 TCCCCCGCAAGCGGGCGGTACCCCCACCTCATCG 27 45 1 GCGGCGACCC 0.946404 -84 CCCCACCTCATCGCTGCGGCCCCCTCGTCGCTTC 27 66 1 TCGTGCCCCC 0.531761 -63 CGACGATGCAGTGGGGGCACCCCCAGCCGCGAAG 27 96 0 GTGGGGCCCC 0.283689 -33 GAGCTCTCCTGCCTTTCCGGTCCCATTCTGCCGA 28 11 1 GCCTTCGCCC 0.378649 -127 GGGCGACGCTGCCACGGTACCGGCTCGACTAGGG 28 52 1 GCCCGGCGGC 0.665472 -86 GTCCACGGACGCATTGGACCTGCCCGTTGTCCCA 28 87 1 GCATGGCGCC 0.673148 -51 *** *** * *** Masking position 14 Map Score: 184.322 Number of sites scoring better than the average of aligned sites = 59218 Number in coding regions = 55216 Number in noncoding regions = 4002 Number of orfs with sites within 600 bp upstream = 1322 Fraction of orfs with sites within 600 bp upstream = 0.212335 Motif number 4 AAAACCTCGCTCAGCTTCTGAAACGATCCT 1 11 0 CGTCGCTCTG 0.259403 -20 GCCAACTATGCGGCCGCCCTCGCGGGTGGCGCC 6 49 1 CGCCCCTCGC 0.864295 -252 TAGATCAACCCTTGTGCCCCCGGCAGGATTCGA 6 111 1 CTGTCCCCGG 0.639987 -190 GGGGATAGAGCGTCTGCCTCCGGAGCAGAAGGC 6 151 0 CGCTCCCCGG 0.889248 -150 GGCTCCGCCGCGCTTGCGATCGCCA 7 3 0 CGTTCGTCGC 0.973159 -215 GCGGCGGAGCCGGGTGCGGCGGGTCGGCACGGT 7 25 1 CGGTCGCGGG 0.812967 -193 CGGGTCGGCACGGTTTGGATTGGGTGGCGATCG 7 44 1 CGTTGGTTGG 0.891772 -174 GGCTCCGCCGCGCTTGCGATCGCCACCCAATCC 7 60 0 CGTTCGTCGC 0.973159 -158 GCGGCGGAGCCGGGTGCGGCGGGTCGGCACGGT 7 82 1 CGGTCGCGGG 0.812967 -136 CGGGTCGGCACGGTTTGGATTGGGTGGCGATCG 7 101 1 CGTTGGTTGG 0.891772 -117 GGCTCCGCCGCGCTTGCGATCGCCACCCAATCC 7 117 0 CGTTCGTCGC 0.973159 -101 GCGGCGGAGCCGGGTGCGGCGGGTCGGCACGGT 7 139 1 CGGTCGCGGG 0.812967 -79 CGGGTCGGCACGGTTTGGATTGGGTGGCGATCG 7 158 1 CGTTGGTTGG 0.891772 -60 GGCTCCGCCGCGCTTGCGATCGCCACCCAATCC 7 174 0 CGTTCGTCGC 0.973159 -44 CCGGGTGCGGCGGGTCGGCACGC 7 205 1 CGGTGGACGC 0.532085 -13 CCGCTGATGGCGATCACCGTTGCAAAGTCGATG 8 157 1 CGTCCCTTGC 0.813812 -100 TCCGGCGAGACGGCTCGCCGGGAATGTC 9 6 1 CGGAGGTCGC 0.863204 -145 CGTCGGTTCGCGTTAGGGTCCGCGCTCGCGGGA 10 56 1 CGTAGGCCGC 0.84049 -34 CTTCGCAGTGCGTGCACGTTCGGCGG 11 4 0 CGGCCGTCGG 0.969022 -80 GCAACCCGCGAGGTCTCCTTCGGGGTTCTAGCC 12 69 0 AGTCCCTCGG 0.437748 -188 CCATCGGATGCGTATCCGGTCGCGCCGATTCAC 12 113 1 CGATCGTCGC 0.652368 -144 CTACTATCGGCTCGTGGCATTGCGGCTAGCAAC 17 48 1 CTGTGCTTGC 0.253604 -253 TCCCAGATAGCGATTTTCATCGGGCTGGTGTGA 17 124 1 CGTTTCTCGG 0.647747 -177 GTCCTGACCGCGGTTCGGGCTGGCGAGCGGTGC 17 162 1 CGTTGGCTGG 0.862747 -139 CCGCAGGGCGCTTTTTGCTTCGGGAAGTGCGTA 18 82 0 CTTTGCTCGG 0.66869 -219 GTTCAGGGCGCGGTTGGGGTTGGTTGATCCTCA 19 26 0 CGTTGGTTGG 0.891766 -132 TTGTCGAACTCTACCCGGGTCGGAAATTTCGGT 19 111 0 CTCCGGTCGG 0.423619 -47 GCCTGGTCGTCGCGACCCGCCGGACGAGGCATC 20 46 0 CGGACCCCGG 0.840094 -200 CTCAGCGGGCCGTTTCGGCCCGCATCGTCGCCC 20 108 1 CGTTGGCCGC 0.956466 -138 CCGGCTGCGGCGAGAACCATCGGCTAACTCAGA 20 179 0 CGGACCTCGG 0.8733 -67 ATCTGCGCCGCGGTTGCCGTCGGGACCGTGCCT 21 23 1 CGTTCCTCGG 0.969148 -96 ATTGCCGCCACGGTCGTGGCCGGGGCCCAGGCA 21 51 0 CGTCTGCCGG 0.604554 -68 GGCAGGCATCCGTTCGCCGTTGGTCTGCCGTTC 22 48 0 CGTCCCTTGG 0.845042 -44 ACGCGTTCGACGGTAGCACTCGGCCAGCCGTCG 23 24 1 CGTACATCGG 0.249587 -191 TGCAGACCAACGCTTTCCGCCCGCGCGAATCGG 23 60 0 CGTTCCCCCG 0.397985 -155 TCTTAGCCCTCGATCAGGCTGGCGGCAGGCCTG 23 137 0 CGTCGGTGGC 0.7511 -78 GGTTTTGGCCCGGTCCGGGCTGGATGTTTGGAG 23 185 1 CGTCGGCTGG 0.826179 -30 CGCAATCCCCAGTTTTGCTTCGCAGCGACCGAC 24 87 1 AGTTGCTCGC 0.39572 -214 TGGCTGGGTCCGGCGTCGGTCGCTGCGAAGCAA 24 101 0 CGCGCGTCGC 0.472346 -200 GCGTCTCCCCTTGCCGCGAGCGCG 25 2 1 CGCTCCTTGC 0.659224 -114 CGCGAGCGCGCGTGTTCCCCCGCAAGCGGGAGG 25 25 1 CGGTCCCCGC 0.946223 -91 CCACTCCTTGCGCGAGGGTCCGCACTGGTACAT 25 88 0 CGGAGGCCGC 0.828177 -28 GGCCCATCGACGAGCGGGGTTGCCGA 26 4 0 CGGCGGTTGC 0.820364 -233 GATCCACACACGATCCCGATCGGACTGTTCGAC 26 63 1 CGTCCGTCGG 0.971585 -174 CTGCGGCCCCCTCGTCGCTTCGCGGCTGGGGGT 27 79 1 CTGTGCTCGC 0.596738 -50 ** ** ** **** Masking position 1 Map Score: 67.6927 Number of sites scoring better than the average of aligned sites = 16561 Number in coding regions = 15324 Number in noncoding regions = 1237 Number of orfs with sites within 600 bp upstream = 779 Fraction of orfs with sites within 600 bp upstream = 0.12512 Motif number 5 GGGCTGAGGTGGTTGGGCTTCGAATCCGTTGC 6 264 0 GGTTGGCTCG 0.783463 -37 GCTCCGCCGCGCTTGCGATCGCCA 7 3 0 GCTTCGATGC 0.967605 -215 GGGTCGGCACGGTTTGGATTGGGTGGCGATCG 7 45 1 GGTTGGATGG 0.98804 -173 GCTCCGCCGCGCTTGCGATCGCCACCCAATCC 7 60 0 GCTTCGATGC 0.967605 -158 GGGTCGGCACGGTTTGGATTGGGTGGCGATCG 7 102 1 GGTTGGATGG 0.98804 -116 GCTCCGCCGCGCTTGCGATCGCCACCCAATCC 7 117 0 GCTTCGATGC 0.967605 -101 GGGTCGGCACGGTTTGGATTGGGTGGCGATCG 7 159 1 GGTTGGATGG 0.98804 -59 GCTCCGCCGCGCTTGCGATCGCCACCCAATCC 7 174 0 GCTTCGATGC 0.967605 -44 GACCGGATACGCATCCGATGGGCCGGGGGCCG 12 102 0 GCATCGATGG 0.782336 -155 GACGGCAAATGGTTGCAATAGGTAGCA 14 14 1 GGTTCAATGG 0.87402 -17 TCCTGACCGCGGTTCGGGCTGGCGAGCGGTGC 17 163 1 GGTTGGGCGG 0.884966 -138 TTCAGGGCGCGGTTGGGGTTGGTTGATCCTCA 19 26 0 GGTTGGGTGG 0.983783 -132 TCTGCGCCGCGGTTGCCGTCGGGACCGTGCCT 21 24 1 GGTTCCGTGG 0.810674 -95 TGGGTGGGGTTGCCAGCACTCGG 22 79 0 GGGTGGGTGC 0.865578 -13 CACGGGTTCTGCTTCGACTCGCACAGGTATGC 24 132 1 GCTTGACTGC 0.70203 -169 GTGGATCCGGGGTTAGGCTGGCTTTTCTTAGT 26 38 0 GGTTGGCTGC 0.97307 -199 **** **** ** Masking position 4 Map Score: 20.2055 Number of sites scoring better than the average of aligned sites = 610 Number in coding regions = 520 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 6 CTGTAACACCGCCAGCCCAGGGAGCACCCA 3 125 1 GCCAGCCCGG 0.479887 -20 GGTATAGCGGGCCGGCAACGCGCCGGACACA 4 161 1 GCCGGCAAGC 0.969569 -53 CGGCAACGCGCCGGACACAGCTAACTCACAA 4 173 1 CCGGACACGC 0.216961 -41 GCAGGCAAAGCCCGGCAAAGGCCATCACGGT 5 100 0 CCCGGCAAGG 0.931826 -201 TCGCCATTCGGCCGGCGCTCGCGTGAGTTCG 5 189 0 GCCGGCGCCG 0.97363 -112 CGTTCCTATTCGCGGCGCTGCTGTTTCCGGA 5 271 1 CGCGGCGCGC 0.839743 -30 CAATGTGATCGGCGCCACCCGCGAGGGCGGC 6 61 0 GGCGCCACCG 0.850671 -240 GAATCCTGCCGGGGGCACAAGGGTTGATCTA 6 111 0 GGGGGCACAG 0.34666 -190 CCTGAGCTACGGGGGCGCACGACGACACGTT 6 182 1 GGGGGCGCCG 0.897218 -119 AGTAGCGCATCGCGGCTACCCACTGACCACC 6 233 1 CGCGGCTACC 0.711856 -68 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 18 0 CCCGGCTCGC 0.722915 -200 GTTTGGATTGGGTGGCGATCGCAAGCGCGGC 7 56 1 GGTGGCGACG 0.690187 -162 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 75 0 CCCGGCTCGC 0.722915 -143 GTTTGGATTGGGTGGCGATCGCAAGCGCGGC 7 113 1 GGTGGCGACG 0.690187 -105 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 132 0 CCCGGCTCGC 0.722915 -86 GTTTGGATTGGGTGGCGATCGCAAGCGCGGC 7 170 1 GGTGGCGACG 0.690187 -48 ACCCGCCGCACCCGGCTCCGCCGCGCTTGCG 7 189 0 CCCGGCTCGC 0.722915 -29 CTGGCCGGAAGCAAGCAAACCCCCGCAACCT 8 17 0 GCAAGCAACC 0.146685 -240 CGGCCAGGAAGCGGGCTATCCTCGGAGCCGT 8 41 1 GCGGGCTACC 0.723461 -216 CTCGGAGCCGTCCAGCAATCGCAGCATCTGC 8 61 1 TCCAGCAACG 0.241933 -196 TGGCTGTCCTAGCGGCAAGGCAGTACGTATG 8 91 0 AGCGGCAAGC 0.305254 -166 CGCTAGGACAGCCACCAATTCTTCTTGTGGA 8 108 1 GCCACCAATC 0.0865862 -149 TGCGGACATTCCCGGCGAGCCGTCTCGCCGG 9 12 0 CCCGGCGACC 0.895559 -139 GGACCAGGTTCTCGGCACGCCACGACGGGCG 9 108 1 CTCGGCACCC 0.462393 -43 CGCCACGACGGGCGGCCACCGATCACAGAGG 9 125 1 GGCGGCCACG 0.852381 -26 TGGGCCGGGGGCCGGCAACCCGCGAGGTCTC 12 85 0 GCCGGCAACC 0.98363 -172 GATACGCTCGGCGGGCCACCGATCAGTCGAT 12 194 1 GCGGGCCACG 0.704086 -63 TGCGGCACCTCAATTCCGGGC 12 246 0 TGCGGCACTC 0.238264 -11 TTCGACGGCAAATGGTTGCAATAG 14 4 1 GACGGCAATG 0.477656 -27 TGGCATTGCGGCTAGCAACGGTTGGTCTTCG 17 62 1 GCTAGCAAGG 0.389367 -239 CGCGGTTCGGGCTGGCGAGCGGTGCCGATAT 17 170 1 GCTGGCGACG 0.745881 -131 ACACGACTTCGCCGGCATATCGGCACCGCTC 17 186 0 GCCGGCATTC 0.261349 -115 GGGTAACTGTGGCAGCAGAGCCGCAGGGTCG 17 221 0 GGCAGCAGGC 0.376671 -80 TAGGTCACGTGCCAGCACCGGAGGAGGCGGG 18 34 1 GCCAGCACGG 0.889311 -267 AAAGCGCCCTGCGGGCACATGGTTGACGGCG 18 101 1 GCGGGCACTG 0.815999 -200 TGCCGGATTTCGCGGCAGCCGCAGGAAAACT 18 180 0 CGCGGCAGCG 0.76482 -121 GATTCGACACGACGGCAAGGTGTTGAAGGAC 18 244 1 GACGGCAAGT 0.178402 -57 CAAACGGCCGGGCGACACGCGGAACTGACTT 19 80 1 GGCGACACCG 0.782244 -78 CATCAGCCCCGCGGGCGACTGCCTGGTCGTC 20 68 0 GCGGGCGATG 0.516862 -178 GGCCGACTGGGATAGCACCGGCTGCGGCGAG 20 198 0 GATAGCACGG 0.086848 -48 GCACGGTCCCGACGGCAACCGCGGCGCAGAT 21 23 0 GACGGCAACG 0.866625 -96 CCACGACCGTGGCGGCAATGCCGTCGAAGTG 21 65 1 GGCGGCAAGC 0.960289 -54 CGTCGATCCACGCGGCACACTTCGACGGCAT 21 82 0 CGCGGCACCT 0.652228 -37 CCGGGACGGGGCAACGCCGGCGAGGCA 22 7 1 CGGGGCAAGC 0.746252 -85 GGGTGGGGTTGCCAGCACTCGGCAGGCATCC 22 70 0 GCCAGCACCG 0.938088 -22 CCCGCCGGACAGCACGCGTTCGACGGTA 23 8 1 GACAGCACCG 0.597707 -207 CGCGTTCGACGGTAGCACTCGGCCAGCCGTC 23 25 1 GGTAGCACCG 0.581286 -190 GATTCGCGCGGGCGGAAAGCGTTGGTCTGCA 23 62 1 GGCGGAAACG 0.397555 -153 CGATCAGGCTGGCGGCAGGCCTGGTCCTACA 23 129 0 GGCGGCAGCC 0.883443 -86 CATACAATTCGCCGGGACGCGCAATCCCCAG 24 68 1 GCCGGGACCG 0.658556 -233 GTACGGGGCCGCCAGCGCGGCGGCCGGGCGG 24 262 0 GCCAGCGCGC 0.727607 -39 CACGCGCGCTCGCGGCAAGGGGAGACGC 25 8 0 CGCGGCAAGG 0.912077 -108 GCGCGTGTTCCCCCGCAAGCGGGAGGTGCCC 25 32 1 CCCCGCAACG 0.529356 -84 TCGGCGTACTGGGGGCACCTCCCGCTTGCGG 25 44 0 GGGGGCACTC 0.753203 -72 CCCCCAGTACGCCGACACACCGATTTTGATG 25 60 1 GCCGACACCC 0.811178 -56 GGCCGCCACTCCTTGCGCGAGG 25 104 0 GCCGCCACCC 0.872036 -12 GTTCGACACCGCGGGCAACCTGGCCAAGTTA 26 89 1 GCGGGCAACT 0.566273 -148 ACAGCTAGAGCCGGGCAATCGAGCTTAACTT 26 114 0 CCGGGCAACG 0.889608 -123 TGTATTCACCGCTGGCAAACCCCTTAAAAGC 26 153 0 GCTGGCAACC 0.878845 -84 TGAATACAACGGCGACAACCGTCTCGCGCGG 26 176 1 GGCGACAACG 0.702763 -61 CGCGCGGGCGGCGGCCACCTCGGACCCTGTA 26 200 1 GCGGCCACTC 0.230688 -37 GCCACCTCTCCCCCGCAAGCGGGCGGTACCC 27 37 1 CCCCGCAACG 0.529356 -92 CCCGCAAGCGGGCGGTACCCCCACCTCATCG 27 48 1 GGCGGTACCC 0.476451 -81 ACGATGCAGTGGGGGCACCCCCAGCCGCGAA 27 97 0 GGGGGCACCC 0.955766 -32 ******** ** Masking position 6 Map Score: 70.4511 Number of sites scoring better than the average of aligned sites = 41802 Number in coding regions = 39164 Number in noncoding regions = 2638 Number of orfs with sites within 600 bp upstream = 1188 Fraction of orfs with sites within 600 bp upstream = 0.190813 Motif number 7 TTCTCTGTGTACCCTTCGACGAGATAACACGC 2 41 1 ACCCTCGCGA 0.921128 -39 ATATGTGCGTCACATTCGGCGATTTTTCGGTA 4 35 0 CACATCGCGA 0.940769 -179 CGCTTAAGTTCCACCTCGGCGTTCACCGGAAG 4 111 0 CCACTCGCGT 0.940698 -103 AGCACCAACACCAAGTCGGCCATGTGAGTCCT 5 67 0 CCAATCGCCA 0.791388 -234 CTACGGTCGACAACATCGTCGGGTTGGTGATC 5 223 1 CAACTCGCGG 0.949843 -78 GTCTCGCTCTCAAATTCGTCGGGGTAAGAACC 6 11 0 CAAATCGCGG 0.93688 -290 ATCACCGTTGCAAAGTCGATGATTGGCGCACT 8 169 1 CAAATCGTGA 0.479001 -88 TTGCAGTCAGCCAAATCGCCGAGTGCGCCAAT 8 190 0 CCAATCGCGA 0.971034 -67 TGGTCCGGTTCCAACTCGTTGAGCATCGATTA 9 82 0 CCAATCGTGA 0.70693 -69 GCAGTGCGTGCACGTTCGGCGG 11 1 0 CACGTCGCGG 0.928692 -83 ACAGCTGCGAACAATTGGCCGAATCTTCGCAG 11 29 0 ACAATGGCGA 0.250682 -55 CTGAGAGCTGAACACTCGCCGAACGTGCAACA 11 58 0 AACATCGCGA 0.777202 -26 ACCTATTGCAACCATTTGCCGTCGAA 14 5 0 ACCATTGCGT 0.208305 -26 GTGCACAGTGCACATTCGCCCTACTATCGGCT 17 28 1 CACATCGCCT 0.400096 -273 TCGATTCACACGACTTCGCCGGCATATCGGCA 17 192 0 CGACTCGCGG 0.856791 -109 TCGTCCTTCAACACCTTGCCGTCGTGTCGAAT 18 245 0 ACACTTGCGT 0.212605 -56 CGCGCCCTGAACACGTCGACGACTTGCGCTAA 19 47 1 ACACTCGCGA 0.903789 -111 CCCAGTATGCCCCACTTGGCGACTCTTGTGGA 20 16 1 CCCATTGCGA 0.763506 -230 CCGGTGCTATCCCAGTCGGCCCAGCTTGTGAT 20 208 1 CCCATCGCCC 0.54079 -38 TCCACGCGGCACACTTCGACGGCATTGCCGCC 21 75 0 ACACTCGCGG 0.916066 -44 CGGGACGGGGCAACGCCGGCGAGGCATCCAGG 22 12 1 CAACCCGCGA 0.536779 -80 CCGGACAGCACGCGTTCGACGGTAGCACTCGG 23 15 1 CGCGTCGCGG 0.804479 -200 CAACATTCATACAATTCGCCGGGACGCGCAAT 24 61 1 ACAATCGCGG 0.895336 -240 TACGGGGCCGCCAGCGCGGCGGCCGGGCGGTG 24 260 0 CCAGGCGCGG 0.658531 -41 CGCTGGCGGCCCCGTACGACGGATCATGGAGC 24 276 1 CCCGACGCGG 0.742976 -25 GGAGGTGCCCCCAGTACGCCGACACACCGATT 25 53 1 CCAGACGCGA 0.666806 -63 ACTGGTACATCAAAATCGGTGTGTCGGCGTAC 25 66 0 CAAATCGTGT 0.254375 -50 TCGGCAACCCCGCTCGTCGATGGGCCGACT 26 9 1 CCCGTCGCGA 0.967121 -228 ATCGCTGCGGCCCCCTCGTCGCTTCGCGGCTG 27 75 1 CCCCTCGCGC 0.92996 -54 GCCCCCACTGCATCGTCGGCGGCGGCG 27 112 1 CATCTCGCGG 0.58901 -17 CGTCCGTGGACACCCTAGTCGAGCCGGTACCG 28 66 0 CACCTAGCGA 0.383187 -72 **** *** *** Masking position 8 Map Score: 28.505 Number of sites scoring better than the average of aligned sites = 18833 Number in coding regions = 17694 Number in noncoding regions = 1139 Number of orfs with sites within 600 bp upstream = 699 Fraction of orfs with sites within 600 bp upstream = 0.112271 Motif number 8 TGACGCTGTGATCACACCTGGCGACCGGCT 4 66 1 ATCACACCTG 0.566514 -148 CCCGGCAGGATTCGAACCTGCGGCCTTCTG 6 129 1 TTCGAACCTG 0.707635 -172 CGTGTCGTCGTGCGCCCCCGTAGCTCAGGG 6 181 0 TGCGCCCCCG 0.711216 -120 GTTCGCCGTATTCGCCGCTGATGGCGATCA 8 143 1 TTCGCCGCTG 0.986992 -114 GCTGATGGCGATCACCGTTGCAAAGTCGAT 8 159 1 ATCACCGTTG 0.588845 -98 CGGCCAATTGTTCGCAGCTGTTGCACGTTC 11 40 1 TTCGCAGCTG 0.960115 -44 CGCCGAGCGTATCGCAGTCGTCGCACCGGA 12 177 0 ATCGCAGTCG 0.657019 -80 CAGGACAATTTTCACACCAGCCCGATGAAA 17 138 0 TTCACACCAG 0.33138 -163 AGTCGTGTGAATCGACCCTGCGGCTCTGCT 17 209 1 ATCGACCCTG 0.843972 -92 CTCCTCGGGAATCGCAGCCGCGCGCAGCTT 17 274 0 ATCGCAGCCG 0.92151 -27 AATGCCGGATTTCGCGGCAGCCGCAGGAAA 18 183 0 TTCGCGGCAG 0.785649 -118 ACGCTTCGTGATCGCCGCTGTGCTCGTCCT 18 270 0 ATCGCCGCTG 0.981751 -31 GCCGATGGTTCTCGCCGCAGCCGGTGCTAT 20 188 1 CTCGCCGCAG 0.793474 -58 TGCCGCGTGGATCGACGCTGGCAGGATGAC 21 96 1 ATCGACGCTG 0.920166 -23 CAGGCATCCGTTCGCCGTTGGTCTGCCGTT 22 49 0 TTCGCCGTTG 0.925261 -43 TCGGCCAGCCGTCGACCCCGATTCGCGCGG 23 43 1 GTCGACCCCG 0.645235 -172 GATCGGACTGTTCGACACCGCGGGCAACCT 26 80 1 TTCGACACCG 0.40501 -157 CGCCGTTGTATTCACCGCTGGCAAACCCCT 26 160 0 TTCACCGCTG 0.925261 -77 CGAGACGGTTGTCGCCGTTGTATTCACCGC 26 172 0 GTCGCCGTTG 0.810982 -65 CCCTCGTCGCTTCGCGGCTGGGGGTGCCCC 27 87 1 TTCGCGGCTG 0.931653 -42 ********** Masking position 3 Map Score: 20.9096 Number of sites scoring better than the average of aligned sites = 8784 Number in coding regions = 8285 Number in noncoding regions = 499 Number of orfs with sites within 600 bp upstream = 394 Fraction of orfs with sites within 600 bp upstream = 0.063283 Motif number 9 CGCTGCGATGCCGGTGCACAAGAATCGAGA 5 38 1 CCGGTGCACA 0.981878 -263 CGAATCCTGCCGGGGGCACAAGGGTTGATC 6 113 0 CGGGGGCACA 0.809501 -188 GCGTCTGCCTCCGGAGCAGAAGGCCGCAGG 6 145 0 CCGGAGCAGA 0.981925 -156 TCGTGCGCCCCCGTAGCTCAGGGGATAGAG 6 174 0 CCGTAGCTCA 0.718515 -127 ATGGCGATCACCGTTGCAAAGTCGATGATT 8 163 1 CCGTTGCAAA 0.837786 -94 CGAGTTGGAACCGGACCAGGTTCTCGGCAC 9 96 1 CCGGACCAGG 0.752365 -55 TCCTGTACCGCTGGTGCACAGTTCGGGCGT 10 22 0 CTGGTGCACA 0.843897 -68 CCCGGAGCCGAGAACTACGAC 12 2 1 CCGGAGCCGA 0.958238 -255 TCTAGCCGCACCGTACCACAAGGTAGACAC 12 46 0 CCGTACCACA 0.753572 -211 GGGCTGGCGAGCGGTGCCGATATGCCGGCG 17 178 1 GCGGTGCCGA 0.661673 -123 CCCGCCTCCTCCGGTGCTGGCACGTGACCT 18 35 0 CCGGTGCTGG 0.746735 -266 TACGCACTTCCCGAAGCAAAAAGCGCCCTG 18 82 1 CCGAAGCAAA 0.523775 -219 ACGGTCGTGGCCGGGGCCCAGGCACGGTCC 21 45 0 CCGGGGCCCA 0.955346 -74 CGCCGGCGGGCCGTTGCAGACCAACGCTTT 23 77 0 CCGTTGCAGA 0.948198 -138 CCAGCCCGGACCGGGCCAAAACCCAGTATT 23 178 0 CCGGGCCAAA 0.788719 -37 CGGGGTCAGGCTGGTGCATACCTGTGCGAG 24 149 0 CTGGTGCATA 0.412185 -152 CGAGCCGGTACCGTGGCAGCGTCGCCCGGC 28 49 0 CCGTGGCAGC 0.69903 -89 ********** Masking position 3 Map Score: 9.98351 Number of sites scoring better than the average of aligned sites = 4773 Number in coding regions = 4471 Number in noncoding regions = 302 Number of orfs with sites within 600 bp upstream = 273 Fraction of orfs with sites within 600 bp upstream = 0.0438484 Motif number 10 CCAAGAACCTGAGTCGACCACGCTTAAGTTC 4 132 0 GAGTCGACAC 0.609414 -82 GGCCGGCAACGCGCCGGACACAGCTAACTCA 4 170 1 GCGCCGGCAC 0.972548 -44 CGCGGCGAATGATCCGTTCACAGCCACGGAC 5 136 0 GATCCGTCAC 0.622722 -165 CTCGCGGGTGGCGCCGATCACATTGTTGTAG 6 67 1 GCGCCGACAC 0.989292 -234 TCGCGGCTACCCACTGACCACCGCAACGGAT 6 242 1 CCACTGACAC 0.915804 -59 TTTCCTTCCCCCGCTGATCACGTCATACGGG 8 228 0 CCGCTGACAC 0.964753 -29 CGACGGGCGGCCACCGATCACAGAGGGCAGC 9 130 1 CCACCGACAC 0.957101 -21 ACCGACGCCCGAACTGTGCACCAGCGGTACA 10 18 1 GAACTGTCAC 0.765353 -72 CAACCTGAGAGCTGAACACTCGCCGAACG 11 65 0 GAGCTGACAC 0.934852 -19 CCCGGAGCCGAGAACTACGACAAGG 12 5 1 GAGCCGAAAC 0.609342 -252 GCTCGGCGGGCCACCGATCAGTCGATCGGGT 12 199 1 CCACCGACAG 0.636079 -58 GGGCGAATGTGCACTGTGCACAGCAGATTCG 17 18 0 GCACTGTCAC 0.910814 -283 TTCGTGATCGCCGCTGTGCTCGTCCTTCAAC 18 265 0 CCGCTGTCTC 0.571878 -36 CCCCAACCGCGCCCTGAACACGTCGACGACT 19 40 1 GCCCTGACAC 0.923365 -118 CCGTGCCTGGGCCCCGGCCACGACCGTGGCG 21 48 1 GCCCCGGCAC 0.90463 -71 CGCCGTTGGTCTGCCGTTCACCCCCTGGATG 22 36 0 CTGCCGTCAC 0.716164 -56 ******* *** Masking position 6 Map Score: 15.2004 Number of sites scoring better than the average of aligned sites = 4336 Number in coding regions = 4045 Number in noncoding regions = 291 Number of orfs with sites within 600 bp upstream = 250 Fraction of orfs with sites within 600 bp upstream = 0.0401542 Motif number 11 GGTTCTTACCCCGACGAATTTGAGAGC 6 8 1 ACCCCGACGA 0.847493 -293 TGCGATCGCCACCCAATCCAAACCGTGCCG 7 49 0 ACCCAATCCA 0.959558 -169 TGCGATCGCCACCCAATCCAAACCGTGCCG 7 106 0 ACCCAATCCA 0.959558 -112 TGCGATCGCCACCCAATCCAAACCGTGCCG 7 163 0 ACCCAATCCA 0.959558 -55 AACGAGTTGGAACCGGACCAGGTTCTCGGC 9 94 1 AACCGGACCA 0.711825 -57 AGCGGAAACCACCCGATCGACTGATCGGTG 12 210 0 ACCCGATCGA 0.953871 -47 ACCCGAACTAGTCAGCACAA 15 1 1 ACCCGAACTA 0.892854 -44 TGCCACAGTTACCCGGTCTACCATCGTGCG 17 238 1 ACCCGGTCTA 0.916851 -63 AGTGCTGGCAACCCCACCCA 22 82 1 ACCCCACCCA 0.903525 -10 ********** Masking position 1 Map Score: 4.7136 Number of sites scoring better than the average of aligned sites = 608 Number in coding regions = 560 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 42 Fraction of orfs with sites within 600 bp upstream = 0.0067459 Motif number 12 TCGGCCCGGCCGGATCATGCCGTATCGCGAA 3 10 0 CGGATCGCCG 0.895326 -135 GTAGACCCAACGACTCCGTCCGTCGATAGCTA 3 72 1 CGACTCTCCG 0.811849 -73 AACACCAAGTCGGCCATGTGAGTCCTCTCGAT 5 61 0 CGGCCATGAG 0.576663 -240 AGAACTTCTCCGGAAACAGCAGCGCCGCGAAT 5 278 0 CGGAAAGCAG 0.32624 -23 GCCGCAGGTTCGAATCCTGCCGGGGGCACAAG 6 121 0 CGAATCGCCG 0.656387 -180 TACTGCCTTGCCGCTAGGACAGCCACCAATTC 8 97 1 CCGCTAACAG 0.750253 -160 CGGGCGGCCACCGATCACAGAGGGCAGC 9 133 1 CCGATCAGAG 0.54385 -18 GGATGCGTATCCGGTCGCGCCGATTCACGACC 12 118 1 CCGGTCGCCG 0.5509 -139 CGGGTGGTTTCCGCTCCATCAGCCCGGAATTG 12 225 1 CCGCTCTCAG 0.910104 -32 ATGCTGGTAACGGCTACCAGAGCCATCAAGGA 13 17 1 CGGCTAAGAG 0.818575 -32 CGTGGCATTGCGGCTAGCAACGGTTGGTCTTC 17 60 1 CGGCTAAACG 0.29076 -241 GTCCTGACCGCGGTTCGGGCTGGCGAGCGGTG 17 162 1 CGGTTCGCTG 0.38136 -139 TCTACCACGACGGATCCATGCGGGTACGCACG 18 213 1 CGGATCTGCG 0.793728 -88 CGCTGAGGAGCCGCGCCATCAGCCCCGCGGGC 20 83 0 CCGCGCTCAG 0.732071 -163 CGGGCCGAAACGGCCCGCTGAGGAGCCGCGCC 20 98 0 CGGCCCTGAG 0.803868 -148 CGAGAACCATCGGCTAACTCAGACATCGAATA 20 170 0 CGGCTATCAG 0.904023 -76 GCCTGGGCCCCGGCCACGACCGTGGCGGCAAT 21 52 1 CGGCCAACCG 0.6765 -67 CCGCGTGGATCGACGCTGGCAGGATGACTTC 21 98 1 CGACGCGCAG 0.667542 -21 GGTTCTGCTTCGACTCGCACAGGTATGCACCA 24 136 1 CGACTCACAG 0.788487 -165 CCCCGTACGACGGATCATGGAGCGAG 24 285 1 CGGATCGGAG 0.870097 -16 CGCGCGCTCGCGGCAAGGGGAGACGC 25 5 0 CGGCAAGGAG 0.518606 -111 GGCCGCCACTCCTTGCGCGAGGGTCCG 25 99 0 CCACTCTGCG 0.454567 -17 ACACACGATCCCGATCGGACTGTTCGACACCG 26 68 1 CCGATCACTG 0.401776 -169 CTCGATTGCCCGGCTCTAGCTGTTCGATAGTG 26 122 1 CGGCTCGCTG 0.822424 -115 GTGAATACAACGGCGACAACCGTCTCGCGCGG 26 175 1 CGGCGAACCG 0.622154 -62 CGTCGCTTCGCGGCTGGGGGTGCCCCCACTGC 27 91 1 CGGCTGGGTG 0.361426 -38 GCGTCGGCTCCTTCAGATCAGAGTGC 28 122 0 CGGCTCTCAG 0.965098 -16 ****** **** Masking position 1 Map Score: 17.7529 Number of sites scoring better than the average of aligned sites = 16321 Number in coding regions = 15201 Number in noncoding regions = 1120 Number of orfs with sites within 600 bp upstream = 668 Fraction of orfs with sites within 600 bp upstream = 0.107292 Motif number 13 CCAACGACTCCGTCCGTCGATAGCTAGTATC 3 78 1 CGTCCGTCGT 0.927663 -67 GCCTGCTCTACGTCCGTGGCTGTGAACGGAT 5 125 1 CGTCCGTGGT 0.85856 -176 CGAACTCACGCGAGCGCCGGCCGAATGGCGA 5 189 1 CGAGCGCCGC 0.946918 -112 ACGATGTTGTCGACCGTAGTCATCGCCATTC 5 211 0 CGACCGTAGC 0.838024 -90 GCCAACTATGCGGCCGCCCTCGCGGGTGGCG 6 49 1 CGGCCGCCCC 0.854591 -252 AACGTGTCGTCGTGCGCCCCCGTAGCTCAGG 6 182 0 CGTGCGCCCC 0.882053 -119 GAACGTCCATCCTATGGGCTGAGG 6 287 0 CGTCCATCCA 0.11352 -14 CACGCCACGACGGGCGGCCACCGATCACAGA 9 123 1 CGGGCGGCCC 0.893271 -28 GTGCACAGTTCGGGCGTCGGTAAGCCAG 10 8 0 CGGGCGTCGT 0.972423 -82 CGGTACAGGACGGGCGTCGGTTCGCGTTAGG 10 42 1 CGGGCGTCGT 0.972423 -48 CTTCTTCCCGCGAGCGCGGACCCTAACGCGA 10 63 0 CGAGCGCGGC 0.89411 -27 CTATGTCGGTCGTGAATCGGCGCGACCGGAT 12 126 0 CGTGAATCGC 0.292145 -131 GGTCTACCATCGTGCGTAGTAGAAGCTGCGC 17 252 1 CGTGCGTAGA 0.58825 -49 CCGGGCATAGTCTGAATGTGAT 18 2 1 CGGGCATAGC 0.796595 -299 GTAGTGGTCGCGACCATAGTCCCGCCTCCTC 18 54 0 CGACCATAGC 0.442781 -247 CGTGTCGAATCGTGCGTACCCGCATGGATCC 18 224 0 CGTGCGTACC 0.802256 -77 GCCGCCCGCGCGGGCGACGATGCGGGCCGAA 20 121 0 CGGGCGACGT 0.870848 -125 CCGTCGGGACCGTGCCTGGGCCCCGGCCACG 21 39 1 CGTGCCTGGC 0.68275 -80 ATTGCCGCCACGGTCGTGGCCGGGGCCCAGG 21 53 0 CGGTCGTGGC 0.724607 -66 AAGTGTGCCGCGTGGATCGACGCTGGCAGGA 21 91 1 CGTGGATCGC 0.379537 -28 AGCACTCGGCCAGCCGTCGACCCCGATTCGC 23 38 1 CAGCCGTCGC 0.661081 -177 TGCTTCGCAGCGACCGACGCCGGACCCAGCC 24 102 1 CGACCGACGC 0.821986 -199 GGCCCATCGACGAGCGGGGTTGCCGA 26 6 0 CGAGCGGGGT 0.655732 -231 CGATCGGGATCGTGTGTGGATCCGGGGTTAG 26 54 0 CGTGTGTGGT 0.273713 -183 CCGTCTCGCGCGGGCGGCGGCCACCTCGGAC 26 194 1 CGGGCGGCGC 0.972815 -43 CCGAACCGGCCGGGCGACGCTGCCACGGTAC 28 41 1 CGGGCGACGT 0.870848 -97 AGGTCCAATGCGTCCGTGGACACCCTAGTCG 28 77 0 CGTCCGTGGC 0.953461 -61 ********* * Masking position 1 Map Score: 27.1375 Number of sites scoring better than the average of aligned sites = 12982 Number in coding regions = 12087 Number in noncoding regions = 895 Number of orfs with sites within 600 bp upstream = 630 Fraction of orfs with sites within 600 bp upstream = 0.101189 Motif number 14 CTGAGGGTATGAGGGGCAAATTACCGAAAAA 4 14 1 GAGGGGCAAT 0.901771 -200 GGTGATCGCGGTGGCGCTAATGGCGTTCCTA 5 248 1 GTGGCGCAAT 0.945499 -53 GCCCTCGCGGGTGGCGCCGATCACATTGTTG 6 64 1 GTGGCGCGAT 0.949572 -237 GGGTAGCCGCGATGCGCTACTCTGGCGGGGC 6 223 0 GATGCGCACT 0.646391 -78 GGCACGCCACGACGGGCGGCCACCGATCACA 9 121 1 GACGGGCGCC 0.694963 -30 TGCGTATCCGGTCGCGCCGATTCACGACCGA 12 121 1 GTCGCGCGAT 0.786466 -136 TCGCTTCCTCGTGGGGCTAACCTAGCTTGGG 16 12 0 GTGGGGCAAC 0.976012 -28 CGAGCCGATAGTAGGGCGAATGTGCACTGTG 17 31 0 GTAGGGCAAT 0.622798 -270 ACGTCGACGACTTGCGCTAACCAAACGGCCG 19 59 1 CTTGCGCAAC 0.42028 -99 GAGTCGCCAAGTGGGGCATACTGGGGCGCC 20 10 0 GTGGGGCTAC 0.812604 -236 GCAGTCGCCCGCGGGGCTGATGGCGCGGCTC 20 77 1 GCGGGGCGAT 0.90713 -169 TGTATCACAAGCTGGGCCGACTGGGATAGCA 20 212 0 GCTGGGCGAC 0.872434 -34 TGTGATACAGGAGGCGCCAACA 20 234 1 GAGGCGCAAC 0.924549 -12 GACGGCAACCGCGGCGCAGATTAGTGTGTGT 21 13 0 GCGGCGCGAT 0.880439 -106 GGCCACGACCGTGGCGGCAATGCCGTCGAAG 21 63 1 GTGGCGGAAT 0.752616 -56 TCCGTTCGCCGTTGGTCTGCCGTTCACCCCC 22 42 0 GTTGGTCGCC 0.462924 -50 TTGTATGAATGTTGGTCTAACCCCCTGATAA 24 44 0 GTTGGTCAAC 0.545436 -257 TGGGGTGGCCGTTGCGCGACTATGTTGAAGG 24 185 1 GTTGCGCACT 0.820853 -116 CCCGCTCGTCGATGGGCCGACTAAGAAAAGC 26 19 1 GATGGGCGAC 0.874621 -218 CAGCGATGAGGTGGGGGTACCGCCCGCTTGC 27 51 0 GTGGGGGACC 0.824995 -78 CGACGATGCAGTGGGGGCACCCCCAGCCGCG 27 99 0 GTGGGGGACC 0.824937 -30 ******* *** Masking position 4 Map Score: 20.1786 Number of sites scoring better than the average of aligned sites = 5381 Number in coding regions = 4983 Number in noncoding regions = 398 Number of orfs with sites within 600 bp upstream = 332 Fraction of orfs with sites within 600 bp upstream = 0.0533248 Motif number 15 CGGCATGATCCGGCCGGGCCGATGGGTCCGC 3 20 1 CGGCCGGCCG 0.534319 -125 TTGCCGGGCTTTGCCTGCTCTACGTCCGTGG 5 113 1 TTGCCTGTCT 0.146558 -188 GGATAGCCCGCTTCCTGGCCGGAAGCAAGCA 8 31 0 CTTCCTGCCG 0.886731 -226 TGCATACGTACTGCCTTGCCGCTAGGACAGC 8 89 1 CTGCCTTCCG 0.965325 -168 AGAAGAATTGGTGGCTGTCCTAGCGGCAAGG 8 102 0 GTGGCTGCCT 0.786761 -155 GCCGCCCGTCGTGGCGTGCCGAGAACCTGGT 9 110 0 GTGGCGTCCG 0.867539 -41 TCTGTGATCGGTGGCCGCCCGTCGTGGCGTG 9 123 0 GTGGCCGCCG 0.79633 -28 CTGGCTTACCGACGCCCGAAC 10 1 1 CTGGCTTCCG 0.969037 -89 ACACGCGGAACTGACTTACCGAAATTTCCGA 19 94 1 CTGACTTCCG 0.873564 -64 CCGCGGGCGACTGCCTGGTCGTCGCGACCCG 20 60 0 CTGCCTGTCG 0.962544 -186 CCGTCGAACGCGTGCTGTCCGGCGGG 23 6 0 CGTGCTGCCG 0.747439 -209 CCAGACTCCGCCGGCGGGCCGTTGCAGACCA 23 84 0 CCGGCGGCCG 0.874273 -131 GGCCTGCCGCCAGCCTGATCGAGGGCTAAGA 23 139 1 CAGCCTGTCG 0.689287 -76 GAAGGTCACTGTGACGGCCCGAAGCCCCGGT 24 211 1 GTGACGGCCG 0.828405 -90 GGCCGCCGCGCTGGCGGCCCCGTACGACGGA 24 268 1 CTGGCGGCCC 0.844762 -33 CGGGGTTAGGCTGGCTTTTCTTAGTCGGCCC 26 32 0 CTGGCTTTCT 0.516652 -205 CGATCCCGATCGGACTGTTCGACACCGCGGG 26 73 1 CGGACTGTCG 0.68001 -164 TTGCCCGGCTCTAGCTGTTCGATAGTGCTTT 26 127 1 CTAGCTGTCG 0.576054 -110 GAGCTCTCCTGCCTTTCCGGTCCCATTCT 28 9 1 CTGCCTTCCG 0.965373 -129 CGGTCCCATTCTGCCGAACCGGCCGGGCGAC 28 28 1 CTGCCGACCG 0.8146 -110 ******* *** Masking position 5 Map Score: 19.5589 Number of sites scoring better than the average of aligned sites = 7536 Number in coding regions = 7014 Number in noncoding regions = 522 Number of orfs with sites within 600 bp upstream = 393 Fraction of orfs with sites within 600 bp upstream = 0.0631224