AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00252_mtub_reg_300.orf -o00252_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 aspC 30 aspC #2 Rv0338c 108 hypothetical protein Rv0338c #3 Rv0339c 185 hypothetical protein Rv0339c #4 purA 90 purA #5 purB 244 purB #6 Rv0858c 156 hypothetical protein Rv0858c #7 fdxC 212 fdxC #8 Rv1178 32 hypothetical protein Rv1178 #9 ansA 51 ansA #10 nadA 48 nadA #11 argC 193 argC #12 argH 79 argH #13 asnB 245 asnB #14 alaS 90 alaS #15 Rv2556c 106 hypothetical protein Rv2556c #16 aspS 239 aspS #17 gabT 166 gabT #18 pca 24 pca #19 Rv2969c 96 hypothetical protein Rv2969c #20 lipN 300 lipN #21 lat 50 lat #22 Rv3291c 30 hypothetical protein Rv3291c #23 alr 293 alr #24 Rv3424c 162 hypothetical protein Rv3424c #25 gadB 37 gadB #26 Rv3435c 221 hypothetical protein Rv3435c #27 glmS 21 glmS #28 fadD3 47 fadD3 #29 Rv3603c 184 hypothetical protein Rv3603c #30 ftsH 66 ftsH Motif number 1 AGGACAGCCTTTCTCGCGGCGAAAGTCGCA 2 24 1 TTCTCGCGGC 0.450834 -85 ACGGGACTAACGGGGGTGGGGCAAGGAGGC 3 16 0 CGGGGGTGGG 0.884386 -170 CTATCGGTTGAGGCCGCGTCCGTGTTCGGT 3 58 1 AGGCCGCGTC 0.57656 -128 AACGGCGCCCCGGGGCCGGCGGGTTCCGCA 3 87 0 CGGGGCCGGC 0.980206 -99 GCCGGCCCCGGGGCGCCGTTAGGGGATGGC 3 97 1 GGGCGCCGTT 0.533561 -89 ATGCGGGGCTGCGGGACGGGCTGGGGCTAT 3 140 1 GCGGGACGGG 0.908646 -46 GGCTGGTCGGCGGCGGCTCCCTCACCA 3 169 0 CGGCGGCGGC 0.995358 -17 GGGTATGGCGGGGCCGCGGCGTATGTGCTG 5 18 1 GGGCCGCGGC 0.989083 -227 AGCGACATCGCCCGGGCGGCACCGGGACCG 5 107 1 CCCGGGCGGC 0.506278 -138 CGGGCGGCACCGGGACCGGGCGTTGCCGAG 5 119 1 CGGGACCGGG 0.947736 -126 GGGTGCTCCCTGGCGCCGGGACTCGTGTGA 5 173 1 TGGCGCCGGG 0.96043 -72 ACACAGCTTACGGTCGCGGGCCTAGTAGTC 5 210 0 CGGTCGCGGG 0.971228 -35 GGCCCTGTTAGGGTGCCGGTACGGGACCTA 6 67 0 GGGTGCCGGT 0.837579 -90 ACCCTAACAGGGCCCCCGGCCAACCTGTTG 6 83 1 GGCCCCCGGC 0.96802 -74 CAAGGTATCGCTGCGGCGCGCATCGTCGCC 6 119 1 CTGCGGCGCG 0.955065 -38 GGCGCGCATCGTCGCCCGGATAGGCTCGAC 6 133 1 GTCGCCCGGA 0.479571 -24 CCCGGATAGGCTCGACCGCC 6 147 1 CTCGACCGCC 0.47541 -10 CACTTGGCACATGCGTCGGCGTACACGGTC 7 61 0 ATGCGTCGGC 0.67846 -152 TTGCCTCAGCAGGGCCCGGAGGAAGCCTTG 7 134 1 AGGGCCCGGA 0.562732 -79 GCCGGCTGGGGGCAGCACCC 8 1 1 GCCGGCTGGG 0.478311 -32 GGGCAGCACCCGCTCGCGGCGGA 8 20 1 CGCTCGCGGC 0.940801 -13 TAGGGCCGATATGGCCCGCCCAGACCCCGC 9 26 1 ATGGCCCGCC 0.766921 -26 CCGGCCGCGGGGTCTGGGCGG 9 41 0 CGGCCGCGGG 0.990872 -11 CGAGTCGAAGGGGGACCGCC 11 1 0 GGGGACCGCC 0.807281 -193 TGTCCACTAGCTGCGCCGAGTCGAAGGGGG 11 17 0 CTGCGCCGAG 0.84692 -177 TAGTGGACATGTGTCACGGGAAATTCAGCC 11 38 1 GTGTCACGGG 0.712536 -156 TTGACACACCGCCGGGCGGCGCCGATGGGA 11 126 0 GCCGGGCGGC 0.499454 -68 TCCGCGGTGACTGCGCCGGGACTTGACACA 11 148 0 CTGCGCCGGG 0.991564 -46 ATTCTGCGTCTGCTCGCGGGAGAACCG 12 8 0 TGCTCGCGGG 0.578564 -72 CAGAATCGCACGCCGACGGGCGTGGCGGTG 12 40 0 CGCCGACGGG 0.944598 -40 TTTTCTGTGGCGAGCAGACGCAGA 12 66 0 CTGTGGCGAG 0.534313 -14 GTATCACAAGCTGGGCCGACTGGGATAGCA 13 25 1 CTGGGCCGAC 0.859402 -221 GGGATAGCACCGGCTGCGGCGAGAACCATC 13 46 1 CGGCTGCGGC 0.793069 -200 TCGTCGCCCGCGCGGGCGGCGTGGTCTACG 13 105 0 CGCGGGCGGC 0.544146 -141 CGCGGGGCTGATGGCGCGGCTCCTCAGCGG 13 151 0 ATGGCGCGGC 0.890596 -95 ACCAGGCAGTCGCCCGCGGGGCTGATGGCG 13 165 0 CGCCCGCGGG 0.967195 -81 TGGATGCCTCGTCCGGCGGGTCGCGACGAC 13 193 0 GTCCGGCGGG 0.952088 -53 GTGGGGCATACTGGGGCGCC 13 236 1 CTGGGGCGCC 0.955886 -10 TGAGAAGGCTGTCCGACGGCCCAATTCGGC 14 15 0 GTCCGACGGC 0.869951 -76 TGCCCATTGCCCCGGCCGGCCCGTCGGAGG 15 21 0 CCCGGCCGGC 0.504124 -86 GCCTACGGTGGGGGCGCGCCAACCTGCCAA 15 67 0 GGGGCGCGCC 0.936252 -40 CCACCGTAGGCTGGGACGGGTGGATACCGA 15 86 1 CTGGGACGGG 0.943608 -21 GATGGGGTCTGCGCCGTCTCGCCGGAGC 16 9 1 CTGCGCCGTC 0.912013 -231 GCCACACTCCGCGCGCCGGGATCGAGCTCC 16 34 0 GCGCGCCGGG 0.985913 -206 TTGTGCAACAGCGCGGCGACCGTCGTTCCG 16 90 1 GCGCGGCGAC 0.741957 -150 GTCGTTCCGACGGCACCGGGTCCGACTAGG 16 111 1 CGGCACCGGG 0.955723 -129 TGACCGATGTGCGCCGCGGGCACCTCTAGA 16 189 1 GCGCCGCGGG 0.968514 -51 CCAGGTGCGCGGCCCGCGGGTAGGCCTGGC 17 46 0 GGCCCGCGGG 0.953237 -121 ACCGATGTTTCCGGCCTGCCAGACTGGACG 17 93 0 CCGGCCTGCC 0.52674 -74 TCCTCCTCACCCGGCTCGCCGGTTCACATC 17 144 0 CCGGCTCGCC 0.675852 -23 GGCGCCTCTAGCGTACCGGCGGCAAGCCAG 19 18 0 GCGTACCGGC 0.70859 -79 GGCCGCGGTCAGGCGACGGCGCCTCTAGCG 19 35 0 AGGCGACGGC 0.880803 -62 GTCGCCTGACCGCGGCCGCGACAAGCCGAC 19 48 1 CGCGGCCGCG 0.499286 -49 CCACAGCCTTCGGCGACGGCGGCGTAAGCC 20 97 1 CGGCGACGGC 0.981148 -204 GGTGCCGCGAGTCCGGCGTGCCCAACGGCC 20 175 0 GTCCGGCGTG 0.598707 -126 GGCAAGCGGTAGGTGCCGCGAGTCCGGCGT 20 186 0 AGGTGCCGCG 0.750262 -115 CTTGCCCGGTGTCGGCCGGCAGGACCCGAA 20 210 1 GTCGGCCGGC 0.606 -91 GACACTCGATCCGCGCCGTCAGGCTGGATG 20 243 0 CCGCGCCGTC 0.906291 -58 CTACAAAACTCTGTCACGCGCAGCAACGGA 20 271 0 CTGTCACGCG 0.506967 -30 CAACTGTTTCCTGCCACGGGTGATGGGCCG 23 76 1 CTGCCACGGG 0.924573 -218 CACGGGTGATGGGCCGCGGTCAAGCTACGC 23 90 1 GGGCCGCGGT 0.877661 -204 GGTCAAGCTACGCTCCCGTCAATTCATGCC 23 107 1 CGCTCCCGTC 0.65311 -187 TAGAGTGCGGATCGGCCGGCATGAATTGAC 23 124 0 ATCGGCCGGC 0.799815 -170 AACCATCATGCGGCACCGGCAATCTGAGCC 23 162 1 CGGCACCGGC 0.965061 -132 TGGGCTGCAGCCGTGTCGGCGTGACTGTCC 23 229 0 CCGTGTCGGC 0.811416 -65 CCCCGGGTCGCGGTGCTGGGCTGCAGCCGT 23 245 0 CGGTGCTGGG 0.801042 -49 CTGTGCCCGATTGCCCCGGGTCGCGGTGCT 23 258 0 TTGCCCCGGG 0.879742 -36 GCAATGTCTGCTGTGCCGGTTTGGTCTTCA 24 60 1 CTGTGCCGGT 0.786886 -103 GTGCTGTTTTGGGCCTCGGCGAGCCGACAC 24 109 1 GGGCCTCGGC 0.930592 -54 GAACGCCGAGGCGTGTCGGCTCGCCGAGGC 24 121 0 GCGTGTCGGC 0.737111 -42 GTCGAGTGTCTTGGGCCGCCAGGTCCCGTA 26 27 0 TTGGGCCGCC 0.775419 -195 CCAACGTCTCCGCGGTCGCCACGTGGATCG 26 58 0 CGCGGTCGCC 0.509806 -164 GCACAATCACGTGGCCTGGCGGTGGCATCC 26 138 1 GTGGCCTGGC 0.742195 -84 GCTGACGGAGGGGTCCCGCGGTTACAATTT 26 168 1 GGGTCCCGCG 0.898948 -54 GTTACAATTTCCGGGCCGGAACGCACAAGT 26 188 1 CCGGGCCGGA 0.851595 -34 CGGCGCCGCTTGTGCCAGGG 29 1 1 CGGCGCCGCT 0.873312 -184 GCCGGCGGCAATCGGGCGGGTACACCCTGG 29 25 0 ATCGGGCGGG 0.727378 -160 CCCGCCCGATTGCCGCCGGCAACCGACACT 29 35 1 TGCCGCCGGC 0.928202 -150 CAAATCAGCAGTGCCCCGGGTGGGTCTTGA 29 79 1 GTGCCCCGGG 0.980204 -106 GTCCGGTACCCGGGCATGGGACTGGAACGA 29 138 1 CGGGCATGGG 0.544057 -47 CGATCATCGGCCGTGCCGGCCAGGTCCTTC 30 47 0 CCGTGCCGGC 0.977426 -20 ********** Masking position 8 Map Score: 122.615 Number of sites scoring better than the average of aligned sites = 87466 Number in coding regions = 82141 Number in noncoding regions = 5325 Number of orfs with sites within 600 bp upstream = 1531 Fraction of orfs with sites within 600 bp upstream = 0.245904 Motif number 2 GGGACTAACGGGGGTGGGGCAAGGAGGCGG 3 14 0 GGGGTGGGGC 0.818117 -172 GAACCCGCCGGCCCCGGGGCGCCGTTAGGG 3 91 1 GCCCCGGGGC 0.499703 -95 CGCCGTTAGGGGATGGCCGCATTAGGGGAA 3 110 1 GGATGGCCGC 0.833971 -76 TAGGGGAAATGCGGGGCTGCGGGACGGGCT 3 132 1 GCGGGGCTGC 0.916293 -54 GCTGCGGGACGGGCTGGGGCTATGGTGAGG 3 147 1 GGGCTGGGGC 0.844915 -39 TATGGTGAGGGAGCCGCCGCCGACCAGCC 3 167 1 GAGCCGCCGC 0.619059 -19 CCAGGGTATGGCGGGGCCGCGGCGTATGTG 5 15 1 GCGGGGCCGC 0.87426 -230 TCCGTCACTTGCGCCTCTGTCAGAGGGATG 5 58 1 GCGCCTCTGT 0.247923 -187 TCCCGGTGCCGCCCGGGCGATGTCGCTATG 5 104 0 GCCCGGGCGA 0.977234 -141 GCAACGCCCGGTCCCGGTGCCGCCCGGGCG 5 115 0 GTCCCGGTGC 0.666733 -130 CCGGGACCGGGCGTTGCCGAGTTGTCGCGA 5 128 1 GCGTTGCCGA 0.723361 -117 TGTCACACGAGTCCCGGCGCCAGGGAGCAC 5 175 0 GTCCCGGCGC 0.609598 -70 GCGACTACTAGGCCCGCGACCGTAAGCTGT 5 208 1 GGCCCGCGAC 0.715861 -37 CCAACAGGTTGGCCGGGGGCCCTGTTAGGG 6 84 0 GGCCGGGGGC 0.979042 -73 GACGATGCGCGCCGCAGCGATACCTTGCCC 6 116 0 GCCGCAGCGA 0.615944 -41 ATAGCAATCCGGCTTGCCGTCTATGCTGCC 7 14 0 GGCTTGCCGT 0.707251 -199 CTTGGCACATGCGTCGGCGTACACGGTCAA 7 59 0 GCGTCGGCGT 0.728963 -154 CTTCCTCCGGGCCCTGCTGAGGCAATGCGT 7 129 0 GCCCTGCTGA 0.804774 -84 CCCGGAGGAAGCCTTGGCGAGGTGGACAGC 7 148 1 GCCTTGGCGA 0.82459 -65 CGCTATGTGTGGGCTGCTGTCCACCTCGCC 7 163 0 GGGCTGCTGT 0.4437 -50 GCCGGCTGGGGGCAGCACCCGCT 8 4 1 GGCTGGGGGC 0.94823 -29 GCGGGGTCTGGGCGGGCCATATCGGCCCTA 9 26 0 GGCGGGCCAT 0.558676 -26 CCGGCCGCGGGGTCTGGGCGGGC 9 39 0 GCCGCGGGGT 0.763994 -13 AAAACCTGTTGGAGCGCGGAAGGGGCGGCA 10 29 1 GGAGCGCGGA 0.514204 -20 CCGAGTCGAAGGGGGACCGCC 11 2 0 GGGGGACCGC 0.776757 -192 GTCCCCCTTCGACTCGGCGCAGCTAGTGGA 11 15 1 GACTCGGCGC 0.586026 -179 TTGACACACCGCCGGGCGGCGCCGATGGGA 11 126 0 GCCGGGCGGC 0.875316 -68 GGTGTGTCAAGTCCCGGCGCAGTCACCGCG 11 146 1 GTCCCGGCGC 0.609598 -48 CGACGGGCGTGGCGGTGCGATTCTGCGTCT 12 27 0 GGCGGTGCGA 0.798749 -53 GCACCGCCACGCCCGTCGGCGTGCGATTCT 12 39 1 GCCCGTCGGC 0.903699 -41 TGTATCACAAGCTGGGCCGACTGGGATAGC 13 24 1 GCTGGGCCGA 0.442247 -222 CACGCCGCCCGCGCGGGCGACGATGCGGGC 13 112 1 GCGCGGGCGA 0.951469 -134 GGGCCGAAACGGCCCGCTGAGGAGCCGCGC 13 138 1 GGCCCGCTGA 0.886059 -108 GCAGTCGCCCGCGGGGCTGATGGCGCGGCT 13 160 0 GCGGGGCTGA 0.847 -86 TCAGCCCCGCGGGCGACTGCCTGGTCGTCG 13 170 1 GGGCGACTGC 0.538583 -76 TGCCTCGTCCGGCGGGTCGCGACGACCAGG 13 189 0 GGCGGGTCGC 0.686309 -57 ATTATGAGAAGGCTGTCCGACGGCCCAATT 14 19 0 GGCTGTCCGA 0.691517 -72 GCCCCGGCCGGCCCGTCGGAGGAAGGTAAT 15 13 0 GCCCGTCGGA 0.767437 -94 CGACGGGCCGGCCGGGGCAATGGGCAATCC 15 25 1 GCCGGGGCAA 0.711253 -82 CCAGCCTACGGTGGGGGCGCGCCAACCTGC 15 70 0 GTGGGGGCGC 0.88334 -37 GATGGGGTCTGCGCCGTCTCGCCG 16 5 1 GGGTCTGCGC 0.633765 -235 GCTCGATCCCGGCGCGCGGAGTGTGGCCGC 16 37 1 GGCGCGCGGA 0.912328 -203 GGCGCGCGGAGTGTGGCCGCACAACAGCGG 16 47 1 GTGTGGCCGC 0.826059 -193 GCGAATACCCGGCCTTGTGCAACAGCGCGG 16 76 1 GGCCTTGTGC 0.536467 -164 AACGACGGTCGCCGCGCTGTTGCACAAGGC 16 87 0 GCCGCGCTGT 0.802605 -153 CGCGGCGACCGTCGTTCCGACGGCACCGGG 16 101 1 GTCGTTCCGA 0.222811 -139 AAATTATCCTGCGTGACCGATGTGCGCCGC 16 176 1 GCGTGACCGA 0.397645 -64 TCTAGAGGTGCCCGCGGCGCACATCGGTCA 16 189 0 CCCGCGGCGC 0.638615 -51 CCCGCGGGTAGGCCTGGCACCGTGATCGCA 17 34 0 GGCCTGGCAC 0.672423 -133 CAGGCCTACCCGCGGGCCGCGCACCTGGTA 17 48 1 CGCGGGCCGC 0.76916 -119 CTGCCAGACTGGACGGGCACACTGGACTGT 17 78 0 GGACGGGCAC 0.424471 -89 GTCGAGGCTGGCTTGCCGCCGGTACGCTA 19 10 1 GGCTTGCCGC 0.933347 -87 AGGCGCCGTCGCCTGACCGCGGCCGCGACA 19 41 1 GCCTGACCGC 0.816272 -56 ATCAACACCTGGGCAGGTGCTGAGCCACAG 20 73 1 GGGCAGGTGC 0.362997 -228 CGTAGAGTTGGCCGTTGGGCACGCCGGACT 20 166 1 GCCGTTGGGC 0.567213 -135 AAGACATCCAGCCTGACGGCGCGGATCGAG 20 239 1 GCCTGACGGC 0.666612 -62 TATCGCAACGGCAGTGCCGC 22 1 0 GCAGTGCCGC 0.566298 -30 TGCACGGGCGCAATAGGTTCA 23 2 1 GCACGGGCGC 0.896938 -292 CACGGGTGATGGGCCGCGGTCAAGCTACGC 23 90 1 GGGCCGCGGT 0.753017 -204 ATTCATGCCGGCCGATCCGCACTCTATTGA 23 128 1 GCCGATCCGC 0.396236 -166 ATTGCCCCGGGTCGCGGTGCTGGGCTGCAG 23 249 0 GTCGCGGTGC 0.625924 -45 GCTGTTTTGGGCCTCGGCGAGCCGACACGC 24 111 1 GCCTCGGCGA 0.91721 -52 GAGCCGACACGCCTCGGCGTTCTCAGCTAA 24 129 1 GCCTCGGCGT 0.854838 -34 TCCTGCCAGTCCGCAACAAGCCCG 25 5 1 GCCAGTCCGC 0.382898 -33 CAATCACGTGGCCTGGCGGTGGCATCCGCT 26 141 1 GCCTGGCGGT 0.828664 -81 TGACGGAGGGGTCCCGCGGTTACAATTTCC 26 170 1 GTCCCGCGGT 0.580432 -52 GGCGGCAATCGGGCGGGTACACCCTGGCAC 29 22 0 GGGCGGGTAC 0.480064 -163 CCCACCCGGGGCACTGCTGATTTGGTCACT 29 73 0 GCACTGCTGA 0.29533 -112 ATCGACTACAGTCTTGGTGACCGTCCGGTA 29 116 1 GTCTTGGTGA 0.178969 -69 CCAGTCCCATGCCCGGGTACCGGACGGTCA 29 133 0 GCCCGGGTAC 0.715915 -52 AAACCTGTGAGGCCGTCTGCT 29 174 1 GGCCGTCTGC 0.832895 -11 GACCTGGCCGGCACGGCCGATGATCG 30 51 1 GCACGGCCGA 0.842174 -16 ********** Masking position 1 Map Score: 78.1549 Number of sites scoring better than the average of aligned sites = 79137 Number in coding regions = 73401 Number in noncoding regions = 5736 Number of orfs with sites within 600 bp upstream = 1580 Fraction of orfs with sites within 600 bp upstream = 0.253774 Motif number 3 GTCAGGATGAGCAGGTTATGCAGGGGTTCCATT 2 59 1 GCAGGTTTGG 0.682824 -50 CCCGGGGCCGGCGGGTTCCGCACCGAACACGGA 3 76 0 GCGGGTTCGC 0.975009 -110 TCCCCTAACGGCGCCCCGGGGCCGGCGGGTTCC 3 90 0 GCGCCCCGGC 0.572725 -96 GGGGAAATGCGGGGCTGCGGGACGGGCTGGGGC 3 134 1 GGGGCTGGGC 0.723209 -52 TGGTGAGGGAGCCGCCGCCGACCAGCC 3 169 1 GCCGCCGCGC 0.980771 -17 ACCCTACCCAGCAGGTTGCGAGGAGCTGTC 4 8 0 GCAGGTTCGG 0.827458 -83 TTATTGTGGTCCAGCCGGTGACCTACCCTACCC 4 32 0 CCAGCCGTGC 0.900097 -59 ACCTGGTCTCGCAGGCTATGCCCGCTTATTGTG 4 57 0 GCAGGCTTGC 0.855615 -34 TGGCGGGGCCGCGGCGTATGTGCTGTGGTGTCA 5 23 1 GCGGCGTTGC 0.566243 -222 TCAGAGGGATGCGCGTTGTGCCCGTCTCATAGC 5 77 1 GCGCGTTTGC 0.779613 -168 AACGCCCGGTCCCGGTGCCGCCCGGGCGATGTC 5 110 0 CCCGGTGCGC 0.971601 -135 GGCACCGGGACCGGGCGTTGCCGAGTTGTCGCG 5 124 1 CCGGGCGTGG 0.958019 -121 GCGCCAGGGAGCACCCGATGTGCCCGACTCATC 5 156 0 GCACCCGTGC 0.738735 -89 TCACAAAGACACAGCTTACGGTCGCGGGCCTAG 5 215 0 ACAGCTTCGC 0.492475 -30 TTCCACAAAAGGGGGTTTGGATCCTTCTTCAAG 6 32 1 GGGGGTTGGC 0.523269 -125 CTGTTAGGGTGCCGGTACGGGACCTAGTCTTGA 6 60 0 GCCGGTAGGC 0.565161 -97 CCCTAACAGGGCCCCCGGCCAACCTGTTGGTTG 6 84 1 GCCCCCGCCC 0.435701 -73 TCGAGCCTATCCGGGCGACGATGCGCGCCGCAG 6 129 0 CCGGGCGCGG 0.980767 -28 GCATAGCAATCCGGCTTGCCGTCTATGCTGCCC 7 13 0 CCGGCTTCCC 0.564167 -200 AAGGCTTCCTCCGGGCCCTGCTGAGGCAATGCG 7 130 0 CCGGGCCTGG 0.845358 -83 TCCGCCGCGAGCGGGTGCTGCCCCCAGCCGGC 8 10 0 GCGGGTGTGC 0.983535 -23 CCGGCCGCGGGGTCTGGGCGGGCCATATC 9 33 0 GCGGGGTTGC 0.652248 -19 TGCCGCCCCTTCCGCGCTCCAACAGGT 10 32 0 GCCCCTTCGC 0.662404 -17 TCGACTCGGCGCAGCTAGTGGACATGTGTCACG 11 23 1 GCAGCTATGC 0.394943 -171 TGACACACCGCCGGGCGGCGCCGATGGGACTCG 11 122 0 CCGGGCGCGG 0.967833 -72 TCGCACGCCGACGGGCGTGGCGGTGCGATTCTG 12 32 0 ACGGGCGGGG 0.805186 -48 CTGGGATAGCACCGGCTGCGGCGAGAACCATCG 13 44 1 ACCGGCTCGG 0.574071 -202 CGTCGCCCGCGCGGGCGGCGTGGTCTACGCTGC 13 101 0 GCGGGCGCGG 0.902085 -145 CGCCGCCCGCGCGGGCGACGATGCGGGCCGAAA 13 114 1 GCGGGCGCGG 0.987631 -132 GCCGAAACGGCCCGCTGAGGAGCCGCGCCATCA 13 140 1 CCCGCTGGGC 0.906537 -106 AGTCGCCCGCGGGGCTGATGGCGCGGCTCCTCA 13 155 0 GGGGCTGTGG 0.586924 -91 CATCAGCCCCGCGGGCGACTGCCTGGTCGTCGC 13 168 1 GCGGGCGCTC 0.709308 -78 GCCTCGTCCGGCGGGTCGCGACGACCAGGCAGT 13 185 0 GCGGGTCCGG 0.936524 -61 TCCACCCGTCCCAGCCTACGGTGGGGGCGCGCC 15 77 0 CCAGCCTCGG 0.732809 -30 GCCACACTCCGCGCGCCGGGATCGAGCTCCGGC 16 31 0 GCGCGCCGGC 0.761375 -209 CCGGGTATTCGCCGCTGTTGTGCGGCCACACTC 16 55 0 GCCGCTGTGC 0.9468 -185 CGACGGTCGCCGCGCTGTTGCACAAGGCCGGGT 16 82 0 CGCGCTGTGC 0.4543 -158 CAACAGCGCGGCGACCGTCGTTCCGACGGCACC 16 95 1 GCGACCGCGC 0.656272 -145 CCTAGTCGGACCCGGTGCCGTCGGAACGACGGT 16 108 0 CCCGGTGCGG 0.944155 -132 GTCTAGAGGTGCCCGCGGCGCACATCGGTCACG 16 187 0 GCCCGCGCGC 0.912488 -53 AGGCCTACCCGCGGGCCGCGCACCTGGTAACAG 17 49 1 GCGGGCCCGC 0.967957 -118 AACCGGCGAGCCGGGTGAGGAGGATCT 17 150 1 CCGGGTGGGG 0.937889 -17 GACAAATCGAGCACGTGAGGATCAGCGAAACT 19 75 1 GCACGTGGGC 0.733207 -22 CAACACCTGGGCAGGTGCTGAGCCACAGCCTTC 20 75 1 GCAGGTGTGC 0.940491 -226 GTGCTGAGCCACAGCCTTCGGCGACGGCGGCGT 20 89 1 ACAGCCTCGG 0.367062 -212 AGCACTATTCGCGGCTTACGCCGCCGTCGCCGA 20 106 0 GCGGCTTCGG 0.924877 -195 CTACCGCTTGCCCGGTGTCGGCCGGCAGGACCC 20 204 1 CCCGGTGCGC 0.973259 -97 GTTTCCTGCCACGGGTGATGGGCCGCGGTCAAG 23 81 1 ACGGGTGTGC 0.889769 -213 TCAATTCATGCCGGCCGATCCGCACTCTATTGA 23 125 1 CCGGCCGTCC 0.716107 -169 GGCTCAGATTGCCGGTGCCGCATGATGGTTGGC 23 159 0 GCCGGTGCGT 0.526937 -135 GAGCCAAACACCGGGTGATCGGCAACCAACCAC 23 187 1 CCGGGTGTCC 0.738241 -107 CCCGATTGCCCCGGGTCGCGGTGCTGGGCTGCA 23 250 0 CCGGGTCCGG 0.903986 -44 GAGCAGTATTCCGGCCTGTGCCCGATTGCCCCG 23 270 0 CCGGCCTTGC 0.908821 -24 TCGGTTGATGACGGCTGTTGTCGCGTATGGCAA 24 31 1 ACGGCTGTGG 0.723609 -132 TCTTGGGCCGCCAGGTCCCGTACCGTGAGCCAC 26 16 0 CCAGGTCCGC 0.843722 -206 TCGACGCGATCCACGTGGCGACCGCGGAGACGT 26 52 1 CCACGTGCGC 0.819406 -170 CAGGAAGATGGCGGCTGTCGCACAATCACGTGG 26 119 1 GCGGCTGCGC 0.98936 -103 ACGTCAAGACCCACCCGGGGCACTGCTGATTTG 29 79 0 CCACCCGGGC 0.608387 -106 AGTCCCATGCCCGGGTACCGGACGGTCACCAAG 29 128 0 CCGGGTACGC 0.835046 -57 CATCGGCCGTGCCGGCCAGGTCCTTCCCGATAC 30 40 0 GCCGGCCGGC 0.848237 -27 CCTGGCCGGCACGGCCGATGATCG 30 53 1 ACGGCCGTGC 0.87818 -14 ******* ** * Masking position 2 Map Score: 108.992 Number of sites scoring better than the average of aligned sites = 53264 Number in coding regions = 50127 Number in noncoding regions = 3137 Number of orfs with sites within 600 bp upstream = 1289 Fraction of orfs with sites within 600 bp upstream = 0.207035 Motif number 4 TCACGATTTGGCACCTGACAGCAA 1 4 1 CGATTGGCAC 0.879185 -27 CGTCCGTGTTCGGTGCGGAACCCGCCGGCCC 3 74 1 CGGTCGGAAC 0.853032 -112 GAGGGATGCGCGTTGTGCCCGTCTCATAGCG 5 80 1 CGTTTGCCCG 0.74589 -165 CGCCCGGTCCCGGTGCCGCCCGGGCGATGTC 5 110 0 CGGTCCGCCC 0.93819 -135 AGGGAGCACCCGATGTGCCCGACTCATCGCG 5 153 0 CGATTGCCCG 0.938907 -92 GTTAGGGTGCCGGTACGGGACCTAGTCTTGA 6 60 0 CGGTCGGGAC 0.945386 -97 ATCCGGGCGACGATGCGCGCCGCAGCGATAC 6 123 0 CGATCGCGCC 0.986446 -34 CGTACACGGTCAATATGCACCTAGTTGCATA 7 41 0 CAATTGCACC 0.753467 -172 CCCCTAGGGCCGATATGGCCCGCCCAGACCC 9 22 1 CGATTGGCCC 0.97197 -30 CGTTATGCAACAGTTTGCAAA 11 183 0 CGTTTGCAAC 0.404343 -11 CGGTTCTCCCGCGAGCAGACG 12 1 1 CGGTCTCCCG 0.466046 -79 TCCTGTATCACAAGCTGGGCCGACTGGGATA 13 21 1 CAAGTGGGCC 0.529932 -225 GCGCGGGCGACGATGCGGGCCGAAACGGCCC 13 122 1 CGATCGGGCC 0.982938 -124 CCTCGTCCGGCGGGTCGCGACGACCAGGCAG 13 186 0 CGGGCGCGAC 0.773603 -60 GGCGCCCCAGTATGCCCCACTTGGCGAC 13 228 0 CAGTTGCCCC 0.918911 -18 TCCGACGGCCCAATTCGGCCCGC 14 3 0 CAATCGGCCC 0.900382 -88 CTTCCTCCGACGGGCCGGCCGGGGCAATGGG 15 18 1 CGGGCGGCCG 0.767814 -89 TCCCAGCCTACGGTGGGGGCGCGCCAACCTG 15 71 0 CGGTGGGGCG 0.79626 -36 ATCGGTATCCACCCGTCCCAGCC 15 94 0 CGGTTCCACC 0.837024 -13 GATGGGGTCTGCGCCGTCTCGCCGG 16 5 1 GGGTTGCGCC 0.822225 -235 CGCCGGAGCTCGATCCCGGCGCGCGGAGTGT 16 30 1 CGATCCGGCG 0.81085 -210 CCTGCGTGACCGATGTGCGCCGCGGGCACCT 16 183 1 CGATTGCGCC 0.980563 -57 GGTAACAGTCCAGTGTGCCCGTCCAGTCTGG 17 74 1 CAGTTGCCCG 0.799046 -93 TGTGCCCGTCCAGTCTGGCAGGCCGGAAACA 17 87 1 CAGTTGGCAG 0.397789 -80 GCTTTACCAGCGATGTGAACCGGCGAGCCGG 17 133 1 CGATTGAACC 0.555162 -34 TTACCGAGTTGGATATGCCACCTAATCAACA 20 49 1 GGATTGCCAC 0.370622 -252 ACCGCTTGCCCGGTGTCGGCCGGCAGGACCC 20 206 1 CGGTTCGGCC 0.923806 -95 AACGGACACTCGATCCGCGCCGTCAGGCTGG 20 246 0 CGATCGCGCC 0.986443 -55 TCATGCCGGCCGATCCGCACTCTATTGACGC 23 130 1 CGATCGCACT 0.427964 -164 GCGGCACCGGCAATCTGAGCCAAACACCGGG 23 171 1 CAATTGAGCC 0.402087 -123 TCCTGCCAGTCCGCAACAAGCCCGGAA 25 7 1 CAGTCGCAAC 0.569859 -31 AGGTGGCTCACGGTACGGGACCTGGCGGCCC 26 14 1 CGGTCGGGAC 0.945386 -208 CCCACTTGTGCGTTCCGGCCCGGAAATTGTA 26 190 0 CGTTCGGCCC 0.905289 -32 CTCGCTACCCGCCCACTTGTGCG 26 209 0 CGCTCCCGCC 0.63385 -13 TGTACCCGCCCGATTGCCGCCGGCAACCGAC 29 31 1 CGATGCCGCC 0.676138 -154 AGACTGTAGTCGATTTGCACGTCAAGACCCA 29 99 0 CGATTGCACG 0.855818 -86 **** ****** Masking position 1 Map Score: 44.769 Number of sites scoring better than the average of aligned sites = 16350 Number in coding regions = 15113 Number in noncoding regions = 1237 Number of orfs with sites within 600 bp upstream = 812 Fraction of orfs with sites within 600 bp upstream = 0.130421 Motif number 5 GTCCGTGTTCGGTGCGGAACCCGCCGGCCC 3 75 1 GGTGCGGAAC 0.673151 -111 TGAGGGAGCCGCCGCCGACCAGCC 3 172 1 GCCGCCGACC 0.983636 -14 TTGTGGTCCAGCCGGTGACCTACCCTACCC 4 32 0 GCCGGTGACC 0.940971 -59 CAGCACATACGCCGCGGCCCCGCCATACCC 5 18 0 GCCGCGGCCC 0.991236 -227 GCCCGGTCCCGGTGCCGCCCGGGCGATGTC 5 110 0 GGTGCCGCCC 0.920329 -135 GTATCGCTGCGGCGCGCATCGTCGCCCGGA 6 123 1 GGCGCGCATC 0.910557 -34 CTATGTGTGGGCTGCTGTCCACCTCGCCAA 7 161 0 GCTGCTGTCC 0.774183 -52 GCCGCGAGCGGGTGCTGCCCCCAGCCGGC 8 10 0 GGTGCTGCCC 0.945361 -23 GGCGGTCCCCCTTCGACTCG 11 1 1 GGCGGTCCCC 0.831053 -193 GAGTCCCATCGGCGCCGCCCGGCGGTGTGT 11 123 1 GGCGCCGCCC 0.976231 -71 GAAACGGCCCGCTGAGGAGCCGCGCCATCA 13 143 1 GCTGAGGAGC 0.693839 -103 TTGGCAGGTTGGCGCGCCCCCACCGTAGGC 15 67 1 GGCGCGCCCC 0.967208 -40 CCGGCGAGACGGCGCAGACCCCATC 16 6 0 GGCGCAGACC 0.978591 -234 GCGCCGTCTCGCCGGAGCTCGATCCCGGCG 16 21 1 GCCGGAGCTC 0.750403 -219 GCGGAGTGTGGCCGCACAACAGCGGCGAAT 16 52 1 GCCGCACAAC 0.719675 -188 AGGTGCCCGCGGCGCACATCGGTCACGCAG 16 184 0 GGCGCACATC 0.852072 -56 CTACCCGCGGGCCGCGCACCTGGTAACAGT 17 53 1 GCCGCGCACC 0.937243 -114 GTAAAGCCTATCTGCTGACCGATGTTTCCG 17 110 0 TCTGCTGACC 0.422705 -57 CACCTGGGCAGGTGCTGAGCCACAGCCTTC 20 78 1 GGTGCTGAGC 0.80363 -223 AGTGTTGAATGCCGACCAGCACTATTCGCG 20 126 0 GCCGACCAGC 0.659322 -175 CCAGCCTGACGGCGCGGATCGAGTGTCCGT 20 246 1 GGCGCGGATC 0.958552 -55 GCCCTAGACTGCCGCAGTTCCGGGGGAAGT 23 31 0 GCCGCAGTTC 0.70431 -263 ATTCATGCCGGCCGATCCGCACTCTATTGA 23 128 1 GCCGATCCGC 0.742021 -166 GTGGTTGGTTGCCGATCACCCGGTGTTTGG 23 190 0 GCCGATCACC 0.9109 -104 CGCCGACACGGCTGCAGCCCAGCACCGCGA 23 238 1 GCTGCAGCCC 0.945964 -56 CACTGATCTAGCTGAAGACCAAACCGGCAC 24 72 0 GCTGAAGACC 0.836052 -91 GTGTCGGCTCGCCGAGGCCCAAAACAGCAC 24 109 0 GCCGAGGCCC 0.969418 -54 CGGAGTTGACGGCGATGATCACCTACCACA 26 91 1 GGCGATGATC 0.833289 -131 GGCCGGCACGGCCGATGATCG 30 56 1 GCCGATGATC 0.875757 -11 ********** Masking position 4 Map Score: 48.5931 Number of sites scoring better than the average of aligned sites = 17521 Number in coding regions = 16416 Number in noncoding regions = 1105 Number of orfs with sites within 600 bp upstream = 728 Fraction of orfs with sites within 600 bp upstream = 0.116929 Motif number 6 GGAATTTGCTGTCAGGTGCCAAATCGTGA 1 10 0 GTCAGGTGCC 0.291154 -21 CCCCGGGGCCGGCGGGTTCCGCACCGAACA 3 80 0 GGCGGGTTCC 0.593137 -106 CCCGCCGGCCCCGGGGCGCCGTTAGGGGAT 3 94 1 CCGGGGCGCC 0.745173 -92 TTGTGGTCCAGCCGGTGACCTACCCTACCC 4 32 0 GCCGGTGACC 0.816839 -59 GTCGCTATGAGACGGGCACAACGCGCATCC 5 83 0 GACGGGCACA 0.882135 -162 AGCGACATCGCCCGGGCGGCACCGGGACCG 5 107 1 CCCGGGCGGC 0.892262 -138 GTCGCGATGAGTCGGGCACATCGGGTGCTC 5 151 1 GTCGGGCACA 0.772153 -94 ATCGGGTGCTCCCTGGCGCCGGGACTCGTG 5 170 1 CCCTGGCGCC 0.949303 -75 CAACAGGTTGGCCGGGGGCCCTGTTAGGGT 6 83 0 GCCGGGGGCC 0.939869 -74 GGCGGTCCCCCTTCGACTCG 11 1 1 GGCGGTCCCC 0.841067 -193 CGCACGTTTTCGCGGACGCAACTTCGAGTC 11 98 1 CGCGGACGCA 0.622593 -96 TTGACACACCGCCGGGCGGCGCCGATGGGA 11 126 0 GCCGGGCGGC 0.900328 -68 CAAGTCCCGGCGCAGTCACCGCGGAATGAG 11 153 1 CGCAGTCACC 0.715863 -41 TCGTCGCCCGCGCGGGCGGCGTGGTCTACG 13 105 0 CGCGGGCGGC 0.909769 -141 GCGACGACCAGGCAGTCGCCCGCGGGGCTG 13 171 0 GGCAGTCGCC 0.844345 -75 ACGGTCGCCGCGCTGTTGCACAAGGCCGGG 16 83 0 CGCTGTTGCA 0.509725 -157 CCGTCGGAACGACGGTCGCCGCGCTGTTGC 16 94 0 GACGGTCGCC 0.964046 -146 CTAGGGCAATGCCTGTTGCAATGTTTGTTG 16 136 1 GCCTGTTGCA 0.549311 -104 CGATGTGCGCCGCGGGCACCTCTAGACTGA 16 193 1 CGCGGGCACC 0.98094 -47 CCGCGGGTAGGCCTGGCACCGTGATCGCAA 17 33 0 GCCTGGCACC 0.927078 -134 CTACCCGCGGGCCGCGCACCTGGTAACAGT 17 53 1 GCCGCGCACC 0.669472 -114 GGGCACACTGGACTGTTACCAGGTGCGCGG 17 64 0 GACTGTTACC 0.381711 -103 TGCCAGACTGGACGGGCACACTGGACTGTT 17 77 0 GACGGGCACA 0.882135 -90 ACGCTAGAGGCGCCGTCGCCTGACCGCGGC 19 34 1 CGCCGTCGCC 0.853851 -63 CGGCTTACGCCGCCGTCGCCGAAGGCTGTG 20 98 0 CGCCGTCGCC 0.853851 -203 TGCACGGGCGCAATAGGTTCAC 23 3 1 CACGGGCGCA 0.91683 -291 ATTCGCCCTAGACTGCCGCAGTTCCGGGGG 23 35 0 GACTGCCGCA 0.181545 -259 GTGGTTGGTTGCCGATCACCCGGTGTTTGG 23 190 0 GCCGATCACC 0.445068 -104 CCAACGTCTCCGCGGTCGCCACGTGGATCG 26 58 0 CGCGGTCGCC 0.982903 -164 GGAAGATGGCGGCTGTCGCACAATCACGTG 26 121 1 GGCTGTCGCA 0.870196 -101 CACGTGGCCTGGCGGTGGCATCCGCTGACG 26 145 1 GGCGGTGGCA 0.801146 -77 GGAGGGGTCCCGCGGTTACAATTTCCGGGC 26 174 1 CGCGGTTACA 0.696503 -48 GGCGGGTACACCCTGGCACAAGCGGCGCCG 29 11 0 CCCTGGCACA 0.745868 -174 GCGGCAATCGGGCGGGTACACCCTGGCACA 29 21 0 GGCGGGTACA 0.851806 -164 CACCAACAGTGTCGGTTGCCGGCGGCAATC 29 42 0 GTCGGTTGCC 0.740628 -143 CCGGGTACCGGACGGTCACCAAGACTGTAG 29 121 0 GACGGTCACC 0.928279 -64 CAGTCCCATGCCCGGGTACCGGACGGTCAC 29 132 0 CCCGGGTACC 0.903505 -53 ********** Masking position 3 Map Score: 55.1774 Number of sites scoring better than the average of aligned sites = 22366 Number in coding regions = 20923 Number in noncoding regions = 1443 Number of orfs with sites within 600 bp upstream = 835 Fraction of orfs with sites within 600 bp upstream = 0.134115 Motif number 7 CCATTGAGTGCTACGAATTGGGGTGACCTTC 2 87 1 CACGAATTGG 0.691157 -22 AGGGAGCCGCCGCCGACCAGCC 3 174 1 CCCGACCAGC 0.742497 -12 GAGTTGCTCCCACCTGGTCTCGCAGGC 4 74 0 CCCCACCTGG 0.98936 -17 ATACCTTGCCCAACCAACAGGTTGGCCGGGG 6 96 0 CACCAACAGG 0.769684 -61 ACATACACGTCGACCACTTGGCACATGCGTC 7 74 0 CACCACTTGG 0.938527 -139 GCGGGTGCTGCCCCCAGCCGGC 8 2 0 CCCCAGCCGG 0.842534 -31 TCACAAGCTGGGCCGACTGGGATAGCACCGG 13 28 1 GCCGACTGGG 0.808909 -218 CGGCGGGTCGCGACGACCAGGCAGTCGCCCG 13 179 0 CACGACCAGG 0.924316 -67 GCCCCAGTATGCCCCACTTGGCGACTCTTGT 13 222 0 GCCCACTTGG 0.968466 -24 GCGGGCCGAATTGGGCCGTCGGAC 14 4 1 GCCGAATTGG 0.818242 -87 ACGGCACCGGGTCCGACTAGGGCAATGCCTG 16 120 1 GCCGACTAGG 0.932237 -120 ACCCGCGGGCCGCGCACCTGGTAACAGTCCA 17 55 1 CCGCACCTGG 0.962448 -112 GCATTGGGTTCACCGACTTGGGGATCACGAT 20 17 1 CCCGACTTGG 0.974431 -284 TGCACGGGCGCAATAGGTTCACTTCCC 23 7 1 GCGCAATAGG 0.509417 -287 TCAGCGGATGCCACCGCCAGGCCACGTGATT 26 142 0 CACCGCCAGG 0.638905 -80 CTCGCTACCCGCCCACTTGTGCGTTCCGGC 26 202 0 CCCCACTTGT 0.708629 -20 TGCACGTCAAGACCCACCCGGGGCACTGCTG 29 84 0 GCCCACCCGG 0.95002 -101 CTTCCCGATACACGCAGCTGGAAAGTCCAGG 30 20 0 CCGCAGCTGG 0.809806 -47 CGTGTATCGGGAAGGACCTGGCCGGCACGGC 30 37 1 GAGGACCTGG 0.764469 -30 * ********* Masking position 10 Map Score: 20.3217 Number of sites scoring better than the average of aligned sites = 6753 Number in coding regions = 6343 Number in noncoding regions = 410 Number of orfs with sites within 600 bp upstream = 352 Fraction of orfs with sites within 600 bp upstream = 0.0565371 Motif number 8 AAAGGCTGTCCTAACCTACCGGTCG 2 6 0 CTAACCTACC 0.914539 -103 AGCCGGTGACCTACCCTACCCAGCAGGTTG 4 23 0 CTACCCTACC 0.977376 -68 GGCTTGCCGTCTATGCTGCCCGG 7 4 0 CTATGCTGCC 0.847167 -209 GCGGCGTGGTCTACGCTGCGTAGTATTCGA 13 90 0 CTACGCTGCG 0.857405 -156 GCAGCGTAGACCACGCCGCCCGCGCGGGCG 13 101 1 CCACGCCGCC 0.893569 -145 TGGGGGCGCGCCAACCTGCCAATCCATTGA 15 59 0 CCAACCTGCC 0.938668 -48 ATCGGTATCCACCCGTCCCAGCCTACGG 15 89 0 CCACCCGTCC 0.899386 -18 ACAGCGGCGAATACCCGGCCTTGTGCAACA 16 70 1 ATACCCGGCC 0.890638 -170 CGCGGTCAAGCTACGCTCCCGTCAATTCAT 23 104 1 CTACGCTCCC 0.97203 -190 CTCGCTACCCGCCCACTTGTGCGT 26 208 0 CTACCCGCCC 0.984503 -14 GCCCTGTAGGCTAACCTACCAAGCACTTGC 28 11 1 CTAACCTACC 0.914539 -37 GTGCCAGGGTGTACCCGCCCGATTGCCGCC 29 22 1 GTACCCGCCC 0.881221 -163 ********** Masking position 3 Map Score: 9.11973 Number of sites scoring better than the average of aligned sites = 1397 Number in coding regions = 1276 Number in noncoding regions = 121 Number of orfs with sites within 600 bp upstream = 113 Fraction of orfs with sites within 600 bp upstream = 0.0181497 Motif number 9 TACCCGCCTCCTTGCCCCACCCCCGTT 3 6 1 GCCCCTTGCC 0.960295 -180 GAACACGGACGCGGCCTCAACCGATAGCATCG 3 53 0 GCGCCTCACC 0.986419 -133 GTCGGCGGCGGCTCCCTCACCATAGCCCCAGC 3 159 0 GCTCCTCACA 0.901207 -27 CACATACGCCGCGGCCCCGCCATACCCTGGGC 5 13 0 GCGCCCCGCA 0.832698 -232 CCGTCTCATAGCGACATCGCCCGGGCGGCACC 5 98 1 GCGCATCGCC 0.948895 -147 GCGCCGCAGCGATACCTTGCCCAACCAACAGG 6 106 0 GATCCTTGCC 0.453599 -51 TGGGCTGCTGTCCACCTCGCCAAGGCTTCCTC 7 152 0 TCCCCTCGCA 0.829765 -61 GGACGTCTCCTCAACATGTCTTCCAG 7 197 0 GTCCCTCACA 0.594316 -16 GTCTGGGCGGGCCATATCGGCCCTAGGGGATG 9 19 0 GCCTATCGCC 0.701828 -33 GGCCCGCCCAGACCCCGCGGCCGG 9 38 1 GACCCGCGCC 0.816351 -14 TGCCGCCCCTTCCGCGCTCCAAC 10 36 0 GCCCCCCTCC 0.747974 -13 TCCTCAGCGGGCCGTTTCGGCCCGCATCGTCG 13 129 0 GCCTTTCGCC 0.557823 -117 CTGAGGAGCCGCGCCATCAGCCCCGCGGGCGA 13 154 1 GCGCATCACC 0.926636 -92 GACTCTTGTGGATGCCTCGTCCGGCGGGTCGC 13 199 0 GATCCTCGCC 0.868853 -47 TCCCCTTCAACCGGATTAACCG 16 228 0 TCCCTTCACC 0.564037 -12 AGATCCTCCTCACCCGGCTCGCCGG 17 152 0 TCCCCTCACC 0.932799 -15 GTGTGGCTCCCTTATCCGGATGTC 18 8 0 GCTCCTTACC 0.827144 -17 TCGCCTGACCGCGGCCGCGACAAGCCGACAAA 19 49 1 GCGCCGCGCA 0.832698 -48 AGTTGGATATGCCACCTAATCAACACCTGGGC 20 55 1 GCCCCTAACA 0.797169 -246 TTCGGCGACGGCGGCGTAAGCCGCGAATAGTG 20 105 1 GCGCGTAACC 0.416229 -196 GCTTGACCGCGGCCCATCACCCGTGGCAGGAA 23 83 0 GGCCATCACC 0.612422 -211 TCAGCTAAGCGCTGCCTAAACC 24 151 1 GCTCCTAACC 0.827144 -12 *** ***** ** Masking position 11 Map Score: 17.9722 Number of sites scoring better than the average of aligned sites = 10887 Number in coding regions = 10262 Number in noncoding regions = 625 Number of orfs with sites within 600 bp upstream = 460 Fraction of orfs with sites within 600 bp upstream = 0.0738837 Motif number 10 GCATAACCTGCTCATCCTGACATCTGTGCGA 2 49 0 CTCATCCTAC 0.951119 -60 GACAGCTCCTCGCAACCTGCTGGGTA 4 6 1 CTCCTCGCAC 0.989019 -85 TTGTGCCCGTCTCATAGCGACATCGCCCGGG 5 92 1 CTCATAGCAC 0.831488 -153 ATGTGCCCGACTCATCGCGACAACTCGGCAA 5 141 0 CTCATCGCAC 0.982602 -104 GATTCTGCGTCTGCTCGCCACAGAAAA 12 63 1 CTGCTCGCAC 0.983862 -17 ATAATTTCGGCTCATCTCAACAAACATTGCA 16 152 0 CTCATCTCAC 0.897301 -88 AGATCCTCCTCACCCGGCTCGCC 17 154 0 ATCCTCCTAC 0.730532 -13 AGTTTCGCTGATCCTCACGTGCTCGATT 19 79 0 CTGATCCTAC 0.929434 -18 GTGTCCGTTGCTGCGCGTGACAGAGTTTTGT 20 268 1 CTGCGCGTAC 0.844378 -33 GGGCTGCTCCCTACAAAACTCTGT 20 287 0 CTGCTCCCAC 0.980087 -14 ******** ** Masking position 2 Map Score: 8.94919 Number of sites scoring better than the average of aligned sites = 311 Number in coding regions = 265 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 11 CGGCGCCCCGGGGCCGGCGGGTTCCGCACC 3 85 0 GGGCCGGCGG 0.87013 -101 AGAGGCGCAAGTGACGGATGTGACACCACA 5 46 0 GTGACGGATG 0.899101 -199 GCGCATCCCTCTGACAGAGGCGCAAGTGAC 5 61 0 CTGACAGAGG 0.86652 -184 AGCACCCGATGTGCCCGACTCATCGCGACA 5 150 0 GTGCCCGACT 0.288478 -95 CGGGACTCGTGTGACAACTGCGACTACTAG 5 189 1 GTGACAACTG 0.176904 -56 ACCGTGTACGCCGACGCATGTGCCAAGTGG 7 62 1 CCGACGCATG 0.284054 -151 TGAATTTCCCGTGACACATGTCCACTAGCT 11 35 0 GTGACACATG 0.558664 -159 TCCCGGCGCAGTCACCGCGGAATGAGTTTG 11 157 1 GTCACCGCGG 0.690034 -37 GGCCCAGCTTGTGATACAGGAGGCGCCAAC 13 12 0 GTGATACAGG 0.106439 -234 GTCGGACCCGGTGCCGTCGGAACGACGGTC 16 107 0 GTGCCGTCGG 0.70672 -133 ATTATCCTGCGTGACCGATGTGCGCCGCGG 16 178 1 GTGACCGATG 0.899101 -62 CAGTCTAGAGGTGCCCGCGGCGCACATCGG 16 192 0 GTGCCCGCGG 0.984639 -48 ACCAGGTGCGCGGCCCGCGGGTAGGCCTGG 17 47 0 CGGCCCGCGG 0.831244 -120 AGCCTATCTGCTGACCGATGTTTCCGGCCT 17 106 0 CTGACCGATG 0.833107 -61 GCGCCGTCGCCTGACCGCGGCCGCGACAAG 19 43 1 CTGACCGCGG 0.968329 -54 ACAGCCTTCGGCGACGGCGGCGTAAGCCGC 20 99 1 GCGACGGCGG 0.906843 -202 CTTTCGGGTCCTGCCGGCCGACACCGGGCA 20 212 0 CTGCCGGCCG 0.761596 -89 GACATCCAGCCTGACGGCGCGGATCGAGTG 20 241 1 CTGACGGCGC 0.578877 -60 GTTGCTGCGCGTGACAGAGTTTTGTAGGGA 20 274 1 GTGACAGAGT 0.538925 -27 TCGCCCTAGACTGCCGCAGTTCCGGGGGAA 23 33 0 CTGCCGCAGT 0.4473 -261 CAACTGTTTCCTGCCACGGGTGATGGGCCG 23 76 1 CTGCCACGGG 0.424085 -218 GGAGCGTAGCTTGACCGCGGCCCATCACCC 23 93 0 TTGACCGCGG 0.809533 -201 CAGATTGCCGGTGCCGCATGATGGTTGGCG 23 158 0 GTGCCGCATG 0.801902 -136 ACCAACCACCGAGCCACAGGACAGTCACGC 23 211 1 GAGCCACAGG 0.214127 -83 ATTCCGGCCTGTGCCCGATTGCCCCGGGTC 23 266 0 GTGCCCGATT 0.513709 -28 CTTTCGGTTGATGACGGCTGTTGTCGCGTA 24 28 1 ATGACGGCTG 0.405162 -135 GATCCACGTGGCGACCGCGGAGACGTTGGG 26 59 1 GCGACCGCGG 0.918155 -163 GTGGCATCCGCTGACGGAGGGGTCCCGCGG 26 159 1 CTGACGGAGG 0.946401 -63 CCCGGAAATTGTAACCGCGGGACCCCTCCG 26 173 0 GTAACCGCGG 0.600321 -49 ACAGTGTCGGTTGCCGGCGGCAATCGGGCG 29 37 0 TTGCCGGCGG 0.832788 -148 CAAATCAGCAGTGCCCCGGGTGGGTCTTGA 29 79 1 GTGCCCCGGG 0.781488 -106 ********** Masking position 5 Map Score: 25.6318 Number of sites scoring better than the average of aligned sites = 21950 Number in coding regions = 20693 Number in noncoding regions = 1257 Number of orfs with sites within 600 bp upstream = 806 Fraction of orfs with sites within 600 bp upstream = 0.129457 Motif number 12 TGACACCACAGCACATACGCCGCGGCCCCG 5 26 0 GCACATACGC 0.966558 -219 ACTAGACGTTGCACATACACGTCGACCACT 7 87 0 GCACATACAC 0.823936 -126 GCGAGCAGACGCAGAATCGCACCGCCACGC 12 21 1 GCAGAATCGC 0.968115 -59 GCGAGCAGACGCAGAATCGCACGCCGACGG 12 51 0 GCAGAATCGC 0.968115 -29 TCCATTACCAGCCTATTCGCCGGATTATGA 14 42 0 GCCTATTCGC 0.742472 -49 GAGTGTGGCCGCACAACAGCGGCGAATACC 16 55 1 GCACAACAGC 0.687353 -185 ACATCGGTCAGCAGATAGGCTTTACCAGCG 17 115 1 GCAGATAGGC 0.761204 -52 ATTCATGCCGGCCGATCCGCACTCTATTGA 23 128 1 GCCGATCCGC 0.848934 -166 GCCTCGGCGAGCCGACACGCCTCGGCGTTC 24 121 1 GCCGACACGC 0.873884 -42 GGCGGCTGTCGCACAATCACGTGGCCTGGC 26 128 1 GCACAATCAC 0.823959 -94 GTACACCCTGGCACAAGCGGCGCCG 29 6 0 GCACAAGCGG 0.615128 -179 ********** Masking position 5 Map Score: 2.38352 Number of sites scoring better than the average of aligned sites = 2114 Number in coding regions = 1853 Number in noncoding regions = 261 Number of orfs with sites within 600 bp upstream = 203 Fraction of orfs with sites within 600 bp upstream = 0.0326052 Motif number 13 GGCGTTGCCGAGTTGTCGCGATGAGTCGGG 5 137 1 AGTTGTCGCG 0.90962 -108 TGTGCCAAGTGGTCGACGTGTATGTGCAAC 7 80 1 GGTCGACGTG 0.927932 -133 GCGACTGCCTGGTCGTCGCGACCCGCCGGA 13 182 1 GGTCGTCGCG 0.991954 -64 TGGATTGGCAGGTTGGCGCGCCCCCACCGT 15 63 1 GGTTGGCGCG 0.97056 -44 TCGGAACGACGGTCGCCGCGCTGTTGCACA 16 91 0 GGTCGCCGCG 0.990262 -149 CGATTTGTCGGCTTGTCGCGGCCGCGGTCA 19 54 0 GCTTGTCGCG 0.970483 -43 GCGGCACTGCCGTTGCGATAGTCTCCG 22 8 1 TGCCGTTGCG 0.402536 -23 GCTGCAGCCGTGTCGGCGTGACTGTCCTGT 23 226 0 TGTCGGCGTG 0.817623 -68 TGATGACGGCTGTTGTCGCGTATGGCAATG 24 36 1 TGTTGTCGCG 0.949439 -127 AGGCGTGTCGGCTCGCCGAGGCCCAAAACA 24 113 0 GCTCGCCGAG 0.819012 -50 TCCTTTCCGGGCTTGTTGCGGACTGGCAGG 25 12 0 GCTTGTTGCG 0.792477 -26 GGCCCAAGACACTCGACGCGATCCACGTGG 26 40 1 ACTCGACGCG 0.863275 -182 ACGTCTCCGCGGTCGCCACGTGGATCGCGT 26 55 0 GGTCGCCACG 0.860925 -167 CCCGGGTGGGTCTTGACGTGCAAATCGACT 29 93 1 TCTTGACGTG 0.525507 -92 ********** Masking position 5 Map Score: 14.4491 Number of sites scoring better than the average of aligned sites = 6875 Number in coding regions = 6381 Number in noncoding regions = 494 Number of orfs with sites within 600 bp upstream = 412 Fraction of orfs with sites within 600 bp upstream = 0.0661741 Motif number 14 GAACCCGCCGGCCCCGGGGCGCCGTTAGGG 3 91 1 GCCCCGGGGC 0.467087 -95 GCGACTACTAGGCCCGCGACCGTAAGCTGT 5 208 1 GGCCCGCGAC 0.950085 -37 CCAACAGGTTGGCCGGGGGCCCTGTTAGGG 6 84 0 GGCCGGGGGC 0.913237 -73 GCGCATCGTCGCCCGGATAGGCTCGACCGC 6 136 1 GCCCGGATAG 0.798458 -21 CCTCAGCAGGGCCCGGAGGAAGCCTTGGCG 7 137 1 GCCCGGAGGA 0.648836 -76 GCGACGATGCGGGCCGAAACGGCCCGCTGA 13 128 1 GGGCCGAAAC 0.716598 -118 CAGTCTGGCAGGCCGGAAACATCGGTCAGC 17 97 1 GGCCGGAAAC 0.988004 -70 CGGCCGGCAGGACCCGAAAGACATCCAGCC 20 222 1 GACCCGAAAG 0.54144 -79 GGCCGGAGACTATCGCAACG 22 21 0 GGCCGGAGAC 0.986581 -10 CATCACCCGTGGCAGGAAACAGTTGCAGTG 23 71 0 GGCAGGAAAC 0.784265 -223 AGTGCGGATCGGCCGGCATGAATTGACGGG 23 121 0 GGCCGGCATG 0.786402 -173 ATCGGGCACAGGCCGGAATACTGCTCA 23 277 1 GGCCGGAATA 0.643939 -17 GGCTCGCCGAGGCCCAAAACAGCACAACCT 24 104 0 GGCCCAAAAC 0.760958 -59 TCCGCAACAAGCCCGGAAAGGATCCGCC 25 20 1 GCCCGGAAAG 0.950973 -18 GGGACCTGGCGGCCCAAGACACTCGACGCG 26 30 1 GGCCCAAGAC 0.739754 -192 GTGCGTTCCGGCCCGGAAATTGTAACCGCG 26 184 0 GCCCGGAAAT 0.750048 -38 GCCCGATTGCCGCCGGCAACCGACACTGTT 29 38 1 CGCCGGCAAC 0.749511 -147 CCAGTCCCATGCCCGGGTACCGGACGGTCA 29 133 0 GCCCGGGTAC 0.783143 -52 GGAAGGACCTGGCCGGCACGGCCGATGATC 30 46 1 GGCCGGCACG 0.75577 -21 ********** Masking position 4 Map Score: 14.6305 Number of sites scoring better than the average of aligned sites = 7948 Number in coding regions = 7394 Number in noncoding regions = 554 Number of orfs with sites within 600 bp upstream = 456 Fraction of orfs with sites within 600 bp upstream = 0.0732412 Motif number 15 ********** No masking Map Score: 4.94781e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0