AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00260_mtub_reg_100.orf -o00260_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: ilvA 34 ilvA Input sequences: #1 bioF2 300 bioF2 #2 glyA2 300 glyA2 #3 purT 300 purT #4 psd 60 psd #5 Rv0439c 293 hypothetical protein Rv0439c #6 Rv0458 67 hypothetical protein Rv0458 #7 Rv0460 59 hypothetical protein Rv0460 #8 Rv0461 37 hypothetical protein Rv0461 #9 Rv0462 63 hypothetical protein Rv0462 #10 serB 173 serB #11 Rv0728c 30 hypothetical protein Rv0728c #12 aldA 201 aldA #13 lpdB 300 lpdB #14 serC 207 serC #15 pra 201 pra #16 metB 31 metB #17 glyA 300 glyA #18 argS 300 argS #19 thrB 217 thrB #20 mmpL6 138 mmpL6 #21 Rv1830 300 hypothetical protein Rv1830 #22 Rv1831 52 hypothetical protein Rv1831 #23 gcvB 48 gcvB #24 glyS 181 glyS #25 thrS 300 thrS #26 serA 29 serA #27 serB2 37 serB2 #28 ctaD 214 ctaD #29 lpdA 202 lpdA #30 ask 256 ask #31 serS 132 serS Motif number 1 GTCGCAGTGCCGATCGGCGGCAGCGCTGAG 1 69 1 CGATCGGCGG 0.94123 -232 ACGGTCGGTGCGACCGTCCCTGTCTCCA 2 9 0 CGACCGTCCC 0.792364 -292 ACGGTCGCACCGACCGTGCCTGACCGAAGG 2 22 1 CGACCGTGCC 0.597991 -279 CAGGACAGAGCGGGGAGGGCGCAACCAGCC 2 95 1 CGGGGAGGGC 0.886997 -206 GCCCGGATCGCGCCGGGCTGGTTGCGCCCT 2 110 0 CGCCGGGCTG 0.861094 -191 ACTCCGGTTTCGACGAGCCCGGATCGCGCC 2 126 0 CGACGAGCCC 0.972923 -175 GTTTCGGCCACGGCGAGGTCGCCAACAGTT 2 182 0 CGGCGAGGTC 0.896952 -119 CCCATTTGGCCGGGCAGCCGATTGCTCCGG 2 232 1 CGGGCAGCCG 0.909831 -69 TCTTTCGTGACGACCCAGCCACGCAGCGC 3 10 0 CGACCCAGCC 0.694126 -291 CGAAGCTGTCCGGTCCGCGCAGGGTTCGTC 3 57 1 CGGTCCGCGC 0.967061 -244 TCGCCTGGCTCGCGGCAGCGACGAACCCTG 3 76 0 CGCGGCAGCG 0.69632 -225 GCGAGCCAGGCGACTGGGCGCATACCTATT 3 93 1 CGACTGGGCG 0.708668 -208 CATACCTATTCGGGTGGCGGCAACCATGTC 3 113 1 CGGGTGGCGG 0.834569 -188 AGCCGAGCAACGACCGAGCGAGAGGGTGAG 3 278 1 CGACCGAGCG 0.679319 -23 GCACTGCGCCCGGCCAGCGTAAGTAGCGGG 5 67 0 CGGCCAGCGT 0.908062 -227 GCAGTGCCCGCGACGGACGGCTCAAGTTGT 5 90 1 CGACGGACGG 0.902479 -204 CTCGCTGCGACGACGGGCCTGGCCTCACCG 5 131 1 CGACGGGCCT 0.97109 -163 TAGGTCGGGACGGTGAGGCCAGGCCCGTCG 5 141 0 CGGTGAGGCC 0.888738 -153 GGGCATGACCCGGTGCGGGGCTTCTTGCAC 5 223 0 CGGTGCGGGG 0.926813 -71 ACCGTGTCCTCGGCCCTCCGATCCGGGTGA 5 261 1 CGGCCCTCCG 0.604172 -33 CTCACACTACCGCCGGGGCCACAATGGCTT 6 13 0 CGCCGGGGCC 0.895388 -55 ATGATTTTGACGAGGAGCCGAATACG 6 52 1 CGAGGAGCCG 0.942506 -16 TAGGTCCGCGCGATGGGCGGAACACGAGG 10 10 0 CGATGGGCGG 0.966319 -164 CAGGAGGTATCGGGAGGCCTAAGGGTCACT 10 39 0 CGGGAGGCCT 0.876437 -135 ACCGGTACGCGCAAAGCTGGGT 10 162 0 CGGTACGCGC 0.932636 -12 CCTCCTGCCGCGACCATCCGATAGCTTGGA 12 14 0 CGACCATCCG 0.61161 -188 GGGGCCACGTCGCGTCGCGGACAGTCCCAT 12 73 0 CGCGTCGCGG 0.78513 -129 TCCGCAAGGCCGCTACACCGTCCTGACCGA 12 110 0 CGCTACACCG 0.577288 -92 TGAGAAGGACCGGCCGGCGT 13 1 0 CGGCCGGCGT 0.968802 -300 CCCAAGAGGACGGCAGACGCAAAGTGAGCC 13 62 1 CGGCAGACGC 0.804866 -239 CAAACCACCGCGACACGGCGTCTGTCACAC 13 112 1 CGACACGGCG 0.941601 -189 TCTGTCACACCGACACACCCACCTCGCGGC 13 132 1 CGACACACCC 0.732507 -169 CAAAAGCTCTCGACACGCCGTGCGAAAAGG 13 194 0 CGACACGCCG 0.972729 -107 GTCTGGTGGGCGATAGGCCGGCACGGCTCA 13 225 1 CGATAGGCCG 0.912339 -76 CGCCTAGCGCCGGTGAGCCGTGCCGGCCTA 13 238 0 CGGTGAGCCG 0.591202 -63 CTGCCAGCGACGCTACGCGCGCCTAGCGCC 13 257 0 CGCTACGCGC 0.902461 -44 GTCATAGTGTCGCCAAGGGTCTGGATAATT 14 75 0 CGCCAAGGGT 0.547498 -133 GCGCCTGTGCCGGCAGGCTTTCGTTCCGCT 14 148 1 CGGCAGGCTT 0.850381 -60 CCGCTCGAGTCGCCGCGGTTCGGTACCCCT 14 173 1 CGCCGCGGTT 0.859235 -35 AACTAAATTGCGGCGCGCCTGCCTGCGCGA 15 11 0 CGGCGCGCCT 0.689423 -191 CAAACAATTACGGCAGGCGGCCAGTGCCGC 15 47 1 CGGCAGGCGG 0.983073 -155 TTCACCGGAACGCCCGGCGGTGAGATGAGC 15 111 0 CGCCCGGCGG 0.872509 -91 CGGACGGTCGGGTGGGCAGTGCAG 16 18 0 CGGTCGGGTG 0.825006 -14 TCACGAGTAGCGGTGGGCGGTTTGTGCCCG 17 124 0 CGGTGGGCGG 0.952018 -177 AGCCCGGGAGCGGCTCGCTGGATACACTGG 17 240 1 CGGCTCGCTG 0.730129 -61 CGGCGCCACCCGCGAGGGCGGCCGCATAGT 18 53 0 CGCGAGGGCG 0.890334 -248 CACCCGGCTCCGCCGCGCTTGCGATCGCCA 19 11 0 CGCCGCGCTT 0.939563 -207 CAAACCGTGCCGACCCGCCGCACCCGGCTC 19 31 0 CGACCCGCCG 0.661885 -187 CACCCGGCTCCGCCGCGCTTGCGATCGCCA 19 68 0 CGCCGCGCTT 0.939563 -150 CAAACCGTGCCGACCCGCCGCACCCGGCTC 19 88 0 CGACCCGCCG 0.661885 -130 CACCCGGCTCCGCCGCGCTTGCGATCGCCA 19 125 0 CGCCGCGCTT 0.939563 -93 CAAACCGTGCCGACCCGCCGCACCCGGCTC 19 145 0 CGACCCGCCG 0.661885 -73 CACCCGGCTCCGCCGCGCTTGCGATCGCCA 19 182 0 CGCCGCGCTT 0.939563 -36 GCGTGCCGACCCGCCGCACCCGGCTC 19 202 0 CGACCCGCCG 0.661885 -16 GTACCTCAGGCGGGGATCCGCGGATTCAAC 20 65 0 CGGGGATCCG 0.685718 -74 GGCGTGGTCGCGCCCCGGGCAATAGCGTCG 20 97 1 CGCCCCGGGC 0.967228 -42 CGCGCATCGTCGCCGCGCTCGGCCTT 21 7 0 CGCCGCGCTC 0.980582 -294 AGCGCGGCGACGATGCGCGCCGGGACGGCG 21 18 1 CGATGCGCGC 0.959025 -283 CGCGCCGGGACGGCGGGCTGAGGAGGCGCG 21 33 1 CGGCGGGCTG 0.761188 -268 AGGAGGCGCGCGATAAGGCCGAGCGCGGCG 21 53 1 CGATAAGGCC 0.486504 -248 CGCGCATCGTCGCCGCGCTCGGCCTTATCG 21 63 0 CGCCGCGCTC 0.980582 -238 TGCTCGCCGTCGCGGCGCGCATCGTCGCCG 21 78 0 CGCGGCGCGC 0.979163 -223 CTGCAATTGTCGACACGCCTAGCGGTTAGT 21 155 1 CGACACGCCT 0.908622 -146 GTATCGCGGTCGCCGGGCGCATTAGGCACT 21 182 0 CGCCGGGCGC 0.991842 -119 ATACGCTGTTCGATGGGCGCGATGCTCCCG 21 236 0 CGATGGGCGC 0.955779 -65 TAATGGCTGTCGGGGGAGCCA 21 290 1 CGGGGGAGCC 0.74392 -11 GAATCGCACGCGGCAGGCTCCTCGG 22 38 1 CGGCAGGCTC 0.949672 -15 AGAGGACTAGCGGCCCTCTCCCTCTGTCT 23 10 0 CGGCCCTCTC 0.718917 -39 CGGGCAGACGCGCGCAGCCCGACACGACTA 24 148 0 CGCGCAGCCC 0.912148 -34 CGGTCGCCGCCGACGGGCCGCTACCGTAGC 25 23 0 CGACGGGCCG 0.723578 -278 GCGACGCTGGCGGCGGTCGCCGCCGACGGG 25 36 0 CGGCGGTCGC 0.917805 -265 CGTCGCTGGACGGGGAGCGGTCAGCGACGC 25 59 0 CGGGGAGCGG 0.963935 -242 TTGGGCTCATCGAGCCGCCGTAAAGCACCC 25 145 1 CGAGCCGCCG 0.967313 -156 CGATCGGTACCGGGCAGGTGACCGGGTGCT 25 168 0 CGGGCAGGTG 0.688476 -133 GGGGCCCAACCGGTACGGCCCCA 27 4 0 CGGTACGGCC 0.881793 -34 CGGTAGCACTCGGCCAGCCGTCGACCCCGA 28 34 1 CGGCCAGCCG 0.507444 -181 GACCCCGATTCGCGCGGGCGGAAAGCGTTG 28 56 1 CGCGCGGGCG 0.85053 -159 CAGACTCCGCCGGCGGGCCGTTGCAGACCA 28 84 0 CGGCGGGCCG 0.50046 -131 ATCAGGCTGGCGGCAGGCCTGGTCCTACAA 28 128 0 CGGCAGGCCT 0.952021 -87 GGTTTTGGCCCGGTCCGGGCTGGATGTTTG 28 185 1 CGGTCCGGGC 0.919837 -30 AAAGCTTAGACGGCGGGGGCTCGGGTGGTA 29 16 1 CGGCGGGGGC 0.986091 -187 GTACCCATCGCGCCGCGCTGCGGTGCGGGT 29 43 1 CGCCGCGCTG 0.800965 -160 CGCCGCGCTGCGGTGCGGGTCATCGTCAAG 29 53 1 CGGTGCGGGT 0.861156 -150 CTCCTCACGCCGCTGCGCGGCGTGCATCGT 29 104 1 CGCTGCGCGG 0.95589 -99 CGTGCATCGTCGCCGAGCTGTGTTGGACTG 29 124 1 CGCCGAGCTG 0.935925 -79 CTCCTCACGCCGCTGCGCGGCGTGCATCGT 29 162 1 CGCTGCGCGG 0.95589 -41 GGGACGTTCGCGATGCGCCGGTCTGAGGTT 30 38 0 CGATGCGCCG 0.903698 -219 GGCTTCCCGTCGCGGGACGTTCGCGATGCG 30 51 0 CGCGGGACGT 0.520173 -206 CGTCCCGCGACGGGAAGCCGGTCTGGATCA 30 62 1 CGGGAAGCCG 0.906503 -195 TCGGACGCCGCGACGGGGTCTGATCCAGAC 30 82 0 CGACGGGGTC 0.925567 -175 GTAGCCCACACGGTGGACGCAGAGTCAACG 30 146 0 CGGTGGACGC 0.801917 -111 CAGCGCAGGCCGGCGCGCCCCCTATTCTGG 30 204 1 CGGCGCGCCC 0.694276 -53 CTGACAGGGTCGGCGGGGCCGCATGACCAA 31 21 1 CGGCGGGGCC 0.809706 -112 ********** Masking position 2 Map Score: 171.719 Number of sites scoring better than the average of aligned sites = 56177 Number in coding regions = 51996 Number in noncoding regions = 4181 Number of orfs with sites within 600 bp upstream = 1376 Fraction of orfs with sites within 600 bp upstream = 0.221009 Motif number 2 ATCGACTCAGCGCTGCCGCCGATCGGCACT 1 74 0 CGCTGCCGCC 0.498644 -227 ACTCTGTTCCCACCGCCACCTTCGGTGGTG 1 122 1 CACCGCCACC 0.963332 -179 GGCGAGGGTTTACCGCAGCCTGCGGGACAT 1 247 1 TACCGCAGCC 0.787182 -54 AGACAGGGACGGTCGCACCGACCGTGCCTG 2 14 1 GGTCGCACCG 0.48686 -287 CATGATGCGACGCCGCAGACTCTCAGGTTT 2 65 1 CGCCGCAGAC 0.814542 -236 AGAGCGGGGAGGGCGCAACCAGCCCGGCGC 2 101 1 GGGCGCAACC 0.49033 -200 ACTCCGGTTTCGACGAGCCCGGATCGCGCC 2 126 0 CGACGAGCCC 0.787725 -175 ACCTCGCCGTGGCCGAAACGATGTCGCGGC 2 193 1 GGCCGAAACG 0.750937 -108 GAAACGATGTCGCGGCCGCCGGATGCCCAT 2 207 1 CGCGGCCGCC 0.508025 -94 GAACACCCTTGACCGCCCCCGAGTACGCCG 2 262 1 GACCGCCCCC 0.955977 -39 CCCCCGAGTACGCCGAACAGACCGGACTGA 2 277 1 CGCCGAACAG 0.850132 -24 AAGCTGTCCGGTCCGCGCAGGGTTCGTCGC 3 59 1 GTCCGCGCAG 0.499759 -242 TCGCCTGGCTCGCGGCAGCGACGAACCCTG 3 76 0 CGCGGCAGCG 0.514429 -225 CCGACATGGTTGCCGCCACCCGAATAGGTA 3 115 0 TGCCGCCACC 0.937369 -186 ATTTTCGCAACTCCGCTCACATCTGCCTGT 3 235 0 CTCCGCTCAC 0.705776 -66 GTCACCGGGTGACGGCAACCCCGCTACTTA 5 48 1 GACGGCAACC 0.746137 -246 CCGTCGCGGGCACTGCGCCCGGCCAGCGTA 5 76 0 CACTGCGCCC 0.838131 -218 CGCTGCCACTCGCTGCGACGACGGGCCTGG 5 123 1 CGCTGCGACG 0.525034 -171 GGCCTGGCCTCACCGTCCCGACCTAGCACT 5 146 1 CACCGTCCCG 0.662899 -148 GTGCAAGAAGCCCCGCACCGGGTCATGCCC 5 223 1 CCCCGCACCG 0.750044 -71 CGGATCGGAGGGCCGAGGACACGGTCGAAC 5 256 0 GGCCGAGGAC 0.687708 -38 GTCCTCGGCCCTCCGATCCGGGTGAGTATG 5 266 1 CTCCGATCCG 0.486207 -28 CTCACACTACCGCCGGGGCCACAATGGCTT 6 13 0 CGCCGGGGCC 0.705153 -55 ACGATTACCGGTCGGCACCCGGAACCGAGC 8 13 1 GTCGGCACCC 0.651467 -25 TACTGGGTCAGGCCGACGAGCACTCGACCA 9 30 1 GGCCGACGAG 0.625168 -34 CCGCGCGATGGGCGGAACACGAGG 10 5 0 GGCGGAACAC 0.544601 -169 GGGCGCCACCGTACGCCAGC 11 1 1 GGGCGCCACC 0.457 -30 GCTTGCCTCCTGCCGCGACCATCCGATAGC 12 19 0 TGCCGCGACC 0.931415 -183 GGACTGTCCGCGACGCGACGTGGCCCCTGG 12 76 1 CGACGCGACG 0.860427 -126 GTAGCGGCCTTGCGGATACGGTCTCGATGA 12 124 1 TGCGGATACG 0.24381 -78 CTACCGCTCCCAACTTCTCCG 12 191 0 TACCGCTCCC 0.797723 -11 CAATACTGCTCAACGCCAACCCCAAGAGGA 13 42 1 CAACGCCAAC 0.380334 -259 ACCCCAAGAGGACGGCAGACGCAAAGTGAG 13 60 1 GACGGCAGAC 0.537331 -241 ACACCCACCTCGCGGCACACACAACACCGA 13 146 1 CGCGGCACAC 0.951687 -155 GATAGGCCGGCACGGCTCACCGGCGCTAGG 13 236 1 CACGGCTCAC 0.784163 -65 ACTCTGCCAGCGACGCTACGCGCGCCTAGC 13 260 0 CGACGCTACG 0.787531 -41 ATACCCGTGCGGACGCACACCTCGGTGGGG 14 20 0 GGACGCACAC 0.629142 -188 TAGTGAGGGGTACCGAACCGCGGCGACTCG 14 178 0 TACCGAACCG 0.374711 -30 AGGCGGCCAGTGCCGCACAGGTCGTGGGCA 15 61 1 TGCCGCACAG 0.835601 -141 TCCGGGACTGCACTGCCCACCCGACCGTCC 16 11 1 CACTGCCCAC 0.585406 -21 TCCATCGAAACACCGCGCCCTGGCCCCAGT 17 40 0 CACCGCGCCC 0.978967 -261 GAATTTCGCACGCTGACGCCGGTTGATGCT 17 88 1 CGCTGACGCC 0.664621 -213 GTCGGGCACAAACCGCCCACCGCTACTCGT 17 122 1 AACCGCCCAC 0.308601 -179 TGCACGTCTGCACCGCAAACGGCAGCCACT 17 176 0 CACCGCAAAC 0.829793 -125 GTATCCAGCGAGCCGCTCCCGGGCTGATTA 17 235 0 AGCCGCTCCC 0.787746 -66 AAGCCAACTATGCGGCCGCCCTCGCGGGTG 18 47 1 TGCGGCCGCC 0.832863 -254 TCGCGGGTGGCGCCGATCACATTGTTGTAG 18 68 1 CGCCGATCAC 0.837116 -233 CTTCTGCTCCGGAGGCAGACGCTCTATCCC 18 153 1 GGAGGCAGAC 0.318668 -148 CGGGGGCGCACGACGACACGTTGCGCCATG 18 191 1 CGACGACACG 0.527266 -110 AGTAGCGCATCGCGGCTACCCACTGACCAC 18 233 1 CGCGGCTACC 0.958686 -68 ACCCACTGACCACCGCAACGGATTCGAAGC 18 250 1 CACCGCAACG 0.932317 -51 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 19 14 1 CGCGGCGGAG 0.507183 -204 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 19 26 0 CGCCGCACCC 0.871402 -192 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 19 71 1 CGCGGCGGAG 0.507183 -147 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 19 83 0 CGCCGCACCC 0.871402 -135 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 19 128 1 CGCGGCGGAG 0.507183 -90 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 19 140 0 CGCCGCACCC 0.871402 -78 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 19 185 1 CGCGGCGGAG 0.507183 -33 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 19 197 0 CGCCGCACCC 0.871402 -21 CAGCCATTCGCACCGCTGAC 20 1 0 CACCGCTGAC 0.833372 -138 CTGTTGAATCCGCGGATCCCCGCCTGAGGT 20 63 1 CGCGGATCCC 0.900859 -76 TACGGGGCGTGGTCGCGCCCCGGGCAATAG 20 92 1 GGTCGCGCCC 0.48795 -47 AAGGCCGAGCGCGGCGACGATGCGCGCCG 21 10 1 CGCGGCGACG 0.546036 -291 CTCCTCAGCCCGCCGTCCCGGCGCGCATCG 21 28 0 CGCCGTCCCG 0.895378 -273 TAAGGCCGAGCGCGGCGACGATGCGCGCCG 21 66 1 CGCGGCGACG 0.546036 -235 CGACGATGCGCGCCGCGACGGCGAGCATCC 21 81 1 CGCCGCGACG 0.553001 -220 CCAGCAACGTCACGGCTGCGTCTCATCTCT 21 123 1 CACGGCTGCG 0.864041 -178 ATCAAAGTATCGCGGTCGCCGGGCGCATTA 21 188 0 CGCGGTCGCC 0.742073 -113 TCGATGGGCGCGATGCTCCCGGTTAACTAT 21 227 0 CGATGCTCCC 0.506934 -74 CAGAATCGCACGCGGCAGGCTCCTCGG 22 36 1 CGCGGCAGGC 0.6442 -17 GCCGCCGACGGGCCGCTACCGTAGCAACTC 25 18 0 GGCCGCTACC 0.946384 -283 TGGCGGCGGTCGCCGCCGACGGGCCGCTAC 25 29 0 CGCCGCCGAC 0.624695 -272 CGGCGGCGACCGCCGCCAGCGTCGCTGACC 25 41 1 CGCCGCCAGC 0.810809 -260 CAGCGTCGCTGACCGCTCCCCGTCCAGCGA 25 57 1 GACCGCTCCC 0.916063 -244 AAGCCTTGGAGACCGACCCG 25 291 1 GACCGACCCG 0.704627 -10 TGGGGCCGTACCGGTTGGGCCCC 27 4 1 GGCCGTACCG 0.681782 -34 CTCGGCCAGCCGTCGACCCCGATTCGCGCG 28 42 1 CGTCGACCCC 0.553903 -173 CGATGACCCGCACCGCAGCGCGGCGCGATG 29 48 0 CACCGCAGCG 0.92555 -155 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 29 101 1 CGCCGCTGCG 0.748029 -102 TCCAACACAGCTCGGCGACGATGCACGCCG 29 121 0 CTCGGCGACG 0.504902 -82 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 29 159 1 CGCCGCTGCG 0.748029 -44 CATAACCTAGCTCGGCGACGATGCACGCCG 29 179 0 CTCGGCGACG 0.504902 -24 GGGACGTTCGCGATGCGCCGGTCTGAGGTT 30 38 0 CGATGCGCCG 0.590281 -219 CCTCCTCGGACGCCGCGACGGGGTCTGATC 30 87 0 CGCCGCGACG 0.553001 -170 CAGCGCAGGCCGGCGCGCCCCCTATTCTGG 30 204 1 CGGCGCGCCC 0.538418 -53 ACATTGGTCATGCGGCCCCGCCGACCCTGT 31 24 0 TGCGGCCCCG 0.915089 -109 GATGGTCCTCTGCCGCCACCCTGACTGGGC 31 92 1 TGCCGCCACC 0.937369 -41 AGACTACTTTTGACGCCCAGTCAGGGTGGC 31 106 0 TGACGCCCAG 0.390408 -27 ********** Masking position 5 Map Score: 113.781 Number of sites scoring better than the average of aligned sites = 71372 Number in coding regions = 66992 Number in noncoding regions = 4380 Number of orfs with sites within 600 bp upstream = 1415 Fraction of orfs with sites within 600 bp upstream = 0.227273 Motif number 3 TCGACGTTATCGCCGGCCCACCAG 1 4 0 CGCGGCCCAC 0.894003 -297 GTCGCAGTGCCGATCGGCGGCAGCGCTGAGT 1 69 1 CGTCGGCGGC 0.725384 -232 GACTCTGTTCCCACCGCCACCTTCGGTGGTG 1 121 1 CCCCGCCACC 0.633428 -180 CCTGAAAGCGCATCCACCACCGAAGGTGGCG 1 135 0 CACCACCACC 0.907972 -166 TCCGTATCCACATTCACCCCCCACGCAAATA 1 198 0 CATCACCCCC 0.921754 -103 GACAGGCCCACGCTGGCGAGGGTTTACCGCA 1 233 1 CGTGGCGAGG 0.510109 -68 CCGACCGCCCGGAAGATTCCAG 1 289 0 CGCCGCCCGG 0.975082 -12 TCTACACCTTCGGTCAGGCACGGTCGGTGCG 2 27 0 CGTCAGGCAC 0.332471 -274 GGGCTGGTTGCGCCCTCCCCGCTCTGTCCTG 2 95 0 CGCCTCCCCG 0.471574 -206 GGGGAGGGCGCAACCAGCCCGGCGCGATCCG 2 106 1 CACCAGCCCG 0.845986 -195 ACTCCGGTTTCGACGAGCCCGGATCGCGCCG 2 125 0 CGCGAGCCCG 0.860483 -176 GCGGTTCAGACAAGGGCCAACTCCGGTTTCG 2 144 0 CAGGGCCAAC 0.263778 -157 ACGATCGAACTGTTGGCGACCTCGCCGTGGC 2 175 1 TGTGGCGACC 0.417175 -126 GCCAAATGGGCATCCGGCGGCCGCGACATCG 2 211 0 CACCGGCGGC 0.644812 -90 GTTCCCGGAGCAATCGGCTGCCCGGCCAAAT 2 235 0 CATCGGCTGC 0.805185 -66 GGAACACCCTTGACCGCCCCCGAGTACGCCG 2 261 1 TGCCGCCCCC 0.964203 -40 GGTATGCGCCCAGTCGCCTGGCTCGCGGCAG 3 88 0 CATCGCCTGG 0.702081 -213 CTTAGCCATCCATCCGGCTCCGACATGGTTG 3 133 0 CACCGGCTCC 0.940012 -168 TCAGGTCACTCAGTTGCCCCCACCTCCTCAT 3 193 1 CATTGCCCCC 0.693949 -108 TGCCGTCACCCGGTGACCCCCGTTTCATCCC 5 34 0 CGTGACCCCC 0.940549 -260 GCGGGCACTGCGCCCGGCCAGCGTAAGTAGC 5 70 0 CGCCGGCCAG 0.810062 -224 CCGGGCGCAGTGCCCGCGACGGACGGCTCAA 5 84 1 TGCCGCGACG 0.524628 -210 GTCGTCGCAGCGAGTGGCAGCGAGGACAACT 5 114 0 CGGTGGCAGC 0.341949 -180 ATAACGTTGGCACTCGCGACCGGTGAGTGCT 5 170 0 CATCGCGACC 0.802401 -124 CGTATTCGGCTCCTCGTCAAAAT 6 55 0 TATCGGCTCC 0.511055 -13 CGCGCTGGTCAGCTGCCATGACCGCG 7 44 0 TGTCAGCTGC 0.33399 -16 CAACGATTACCGGTCGGCACCCGGAACCGAG 8 11 1 CGTCGGCACC 0.96629 -27 TGCTGGCGTACGGTGGCGCCC 11 1 0 CGTGGCGCCC 0.927585 -30 TTAGCAGACTGGCTTGCCTCCTGCCGCGACC 12 29 0 GGTTGCCTCC 0.130213 -173 AACATGGGACTGTCCGCGACGCGACGTGGCC 12 70 1 TGCCGCGACG 0.524604 -132 ACCGATGCACCAGGGGCCACGTCGCGTCGCG 12 84 0 CAGGGCCACG 0.600693 -118 CCTGGTGCATCGGTCAGGACGGTGTAGCGGC 12 101 1 CGTCAGGACG 0.470566 -101 TAGGTGAGAAGGACCGGCCGGCGT 13 4 0 GGCCGGCCGG 0.632528 -297 CACACCGACACACCCACCTCGCGGCACACAC 13 137 1 CACCACCTCG 0.742711 -164 AGCGACGCTACGCGCGCCTAGCGCCGGTGAG 13 251 0 CGGCGCCTAG 0.389952 -50 CACTATGACCCAGCCACCAGCCAGGGCTTGC 14 96 1 CACCACCAGC 0.836582 -112 AATTGCGGCGCGCCTGCCTGCGCGA 15 5 0 CGCTGCCTGC 0.691644 -197 TGTGCGGCACTGGCCGCCTGCCGTAATTGTT 15 49 0 TGCCGCCTGC 0.825551 -153 AATGGGTCAGTGCCCACGACCTGTGCGGCAC 15 70 0 TGCCACGACC 0.492187 -132 GGCACTGACCCATTGGGCCCCGTGGCTCATC 15 87 1 CATGGGCCCC 0.916957 -115 CGGACGGTCGGGTGGGCAGTGCAGT 16 17 0 CGTCGGGTGG 0.532347 -15 GAATTTCGCACGCTGACGCCGGTTGATGCTG 17 88 1 CGTGACGCCG 0.603579 -213 ACTAGTGCCCCAGCTGCCACGTAGGTCACGA 17 148 0 CACTGCCACG 0.411316 -153 GCATTAAGGGTAATCAGCCCGGGAGCGGCTC 17 225 1 TATCAGCCCG 0.268404 -76 CCAGTGTATCCAGCGAGCCGCTCCCGGGCTG 17 239 0 CACGAGCCGC 0.78453 -62 TCGCTGGATACACTGGCGCCCGTGACTGCTG 17 254 1 CATGGCGCCC 0.817396 -47 GCCAACTATGCGGCCGCCCTCGCGGGTGGCG 18 49 1 CGCCGCCCTC 0.738999 -252 GGGGATAGAGCGTCTGCCTCCGGAGCAGAAG 18 153 0 CGCTGCCTCC 0.812146 -148 AACGTGTCGTCGTGCGCCCCCGTAGCTCAGG 18 182 0 CGGCGCCCCC 0.982669 -119 CACGTTGCGCCATGGGGCCCCGCCAGAGTAG 18 207 1 CAGGGGCCCC 0.861143 -94 CGCGGCTACCCACTGACCACCGCAACGGATT 18 243 1 CATGACCACC 0.701876 -58 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 19 20 0 CACCGGCTCC 0.940016 -198 ATCCAAACCGTGCCGACCCGCCGCACCCGGC 19 33 0 TGCGACCCGC 0.679411 -185 GCCGCGCTTGCGATCGCCACCCAATCCAAAC 19 56 0 CGTCGCCACC 0.97799 -162 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 19 77 0 CACCGGCTCC 0.940016 -141 ATCCAAACCGTGCCGACCCGCCGCACCCGGC 19 90 0 TGCGACCCGC 0.679411 -128 GCCGCGCTTGCGATCGCCACCCAATCCAAAC 19 113 0 CGTCGCCACC 0.97799 -105 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 19 134 0 CACCGGCTCC 0.940016 -84 ATCCAAACCGTGCCGACCCGCCGCACCCGGC 19 147 0 TGCGACCCGC 0.679411 -71 GCCGCGCTTGCGATCGCCACCCAATCCAAAC 19 170 0 CGTCGCCACC 0.97799 -48 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 19 191 0 CACCGGCTCC 0.940016 -27 GCGTGCCGACCCGCCGCACCCGGC 19 204 0 TGCGACCCGC 0.679411 -14 CGGTGCGAATGGCTGGGCACCGTTGTGGTGT 20 16 1 GGTGGGCACC 0.478269 -123 GCCCGGGGCGCGACCACGCCCCGTACCTCAG 20 86 0 CGCCACGCCC 0.94385 -53 TCGGCCTTATCGCGCGCCTCCTCAGCCCGCC 21 44 0 CGGCGCCTCC 0.951947 -257 ATGCGCGCCGCGACGGCGAGCATCCATTATT 21 86 1 CGCGGCGAGC 0.847733 -215 CATTATTTGCCGGCCAGCAACGTCACGGCTG 21 110 1 CGCCAGCAAC 0.614593 -191 CGCGATACTTTGATCACGACCTGATAGTTAA 21 204 1 TGTCACGACC 0.330074 -97 TGCTCTCTAACACTCGGGCCCTCAGTAATGG 21 265 1 CATCGGGCCC 0.860205 -36 CACAGAATCGCACGCGGCAGGCTCCTCGG 22 34 1 CAGCGGCAGG 0.51784 -19 AAGGACCTGCCACTGACCTCCACTGTCACAT 24 46 1 CATGACCTCC 0.651855 -136 GTCATGGTAGCGATCGGGACCTGGGTCTCCT 24 103 0 CGTCGGGACC 0.882336 -79 CGGGCAGACGCGCGCAGCCCGACACGACTAC 24 147 0 CGGCAGCCCG 0.807427 -35 CGGTCGCCGCCGACGGGCCGCTACCGTAGCA 25 22 0 CGCGGGCCGC 0.969923 -279 CCGTCGGCGGCGACCGCCGCCAGCGTCGCTG 25 37 1 CGCCGCCGCC 0.939366 -264 GACTGTCCGTCGTCGACGTCCTGCTGGGTAG 25 96 1 CGCGACGTCC 0.73138 -205 CCTTTGGGCTCATCGAGCCGCCGTAAAGCAC 25 142 1 CACGAGCCGC 0.784531 -159 GTAAAGCACCCGGTCACCTGCCCGGTACCGA 25 164 1 CGTCACCTGC 0.855571 -137 TGCCCGGTACCGATCGCCCACACCGGTGATC 25 182 1 CGTCGCCCAC 0.901328 -119 CGGTCGTCGACGTGCGCCCCGATAGCATGGT 25 239 1 CGGCGCCCCG 0.947832 -62 CGTGTCGAAACGATCGCGACCATGCTATCGG 25 257 0 CGTCGCGACC 0.920776 -44 GGGCCGTACCGGTTGGGCCCCATCTGAAGGT 27 13 1 GGTGGGCCCC 0.682826 -25 TCGACGGTAGCACTCGGCCAGCCGTCGACCC 28 30 1 CATCGGCCAG 0.431018 -185 CTCGGCCAGCCGTCGACCCCGATTCGCGCGG 28 42 1 CGCGACCCCG 0.906909 -173 GACCCCGATTCGCGCGGGCGGAAAGCGTTGG 28 56 1 CGGCGGGCGG 0.653644 -159 CGTTGGTCTGCAACGGCCCGCCGGCGGAGTC 28 81 1 CACGGCCCGC 0.945848 -134 AGGACCAGGCCTGCCGCCAGCCTGATCGAGG 28 132 1 CTCCGCCAGC 0.516159 -83 CTCCTCCAAACATCCAGCCCGGACCGGGCCA 28 190 0 CACCAGCCCG 0.845939 -25 CACAGCTTGACGATGACCCGCACCGCAGCGC 29 57 0 CGTGACCCGC 0.891433 -146 TGTGCTTGACTGCTCGGCTCCTCCTCACGCC 29 84 1 TGTCGGCTCC 0.749481 -119 TGTGTTGGACTGCTCGGCTCCTCCTCACGCC 29 142 1 TGTCGGCTCC 0.749481 -61 CGTCCGAGGAGGAGCACCCGCTGCACATGAA 30 105 1 GGGCACCCGC 0.400943 -152 GCTGACTCTGCGTCCACCACGGGAATGTGCG 30 177 0 CGCCACCACG 0.903934 -80 ATAGGGGGCGCGCCGGCCTGCGCTGACTCTG 30 198 0 CGCGGCCTGC 0.944225 -59 CAACATTGGTCATGCGGCCCCGCCGACCCTG 31 25 0 CAGCGGCCCC 0.929638 -108 GGCAGAGGACCATCCACCCGCGATGAAGCGA 31 75 0 CACCACCCGC 0.923212 -58 GGATGGTCCTCTGCCGCCACCCTGACTGGGC 31 91 1 CTCCGCCACC 0.672777 -42 ** ******** Masking position 8 Map Score: 135.543 Number of sites scoring better than the average of aligned sites = 74701 Number in coding regions = 70121 Number in noncoding regions = 4580 Number of orfs with sites within 600 bp upstream = 1512 Fraction of orfs with sites within 600 bp upstream = 0.242853 Motif number 4 GCGCTGCCGCCGATCGGCACTGCGACAACGCGCC 1 61 0 CATCGGCGCG 0.874106 -240 GTGCAAAGTCGAATCGACTCAGCGCTGCCGCCGA 1 82 0 GATCGACGCG 0.717178 -219 GTCGATTCGACTTTGCACCCCGTGACTCTGTTCC 1 98 1 CTTGCACGTG 0.342388 -203 CTGCGGTAAACCCTCGCCAGCGTGGGCCTGTCAT 1 231 0 CCTCGCGGTG 0.615644 -70 TCGTGACGACCCAGCCACGCAGCGC 3 2 0 CAGCCACGCG 0.912654 -299 TTTGCCGAAGCTGTCCGGTCCGCGCAGGGTTCGT 3 52 1 CGTCCGCGCG 0.893191 -249 CGCGCAGGGTTCGTCGCTGCCGCGAGCCAGGCGA 3 72 1 TGTCGCCGCG 0.486918 -229 TGCCGCGAGCCAGGCGACTGGGCGCATACCTATT 3 89 1 CGGCGAGGCG 0.980172 -212 GACCGCTTAGCCATCCATCCGGCTCCGACATGGT 3 135 0 CATCCACGCT 0.161788 -166 GAGCAACGACCGAGCGAGAGGGTGAGCTG 3 282 1 CAGCGAGGTG 0.874689 -19 GAGGCCAGGCCCGTCGTCGCAGCGAGTGGCAGCG 5 123 0 CGTCGTCGCG 0.810732 -171 TAGCACTCACCGGTCGCGAGTGCCAACGTTATTC 5 169 1 CGTCGCGGCC 0.591777 -125 GCCGAGGACACGGTCGAACGAGGGGCATGACCCG 5 241 0 CGTCGAGGGG 0.666805 -53 CATTGTGGCCCCGGCGGTAGTGTGAGCTGTATTA 6 17 1 CGGCGGGGTG 0.820437 -51 CCTCGTGTTCCGCCCATCGCGCGGACCTAGTGA 10 10 1 CGCCCAGGCG 0.836252 -164 CTACGCGCGCCTAGCGCCGGTGAGCCGTGCCGGC 13 241 0 CAGCGCGGAG 0.348008 -60 TCGGACTCTGCCAGCGACGCTACGCGCGCCTAGC 13 260 0 CAGCGACACG 0.228752 -41 ATTCCCGGTACCAGCGGTACCGTGTTCGATACCC 14 44 0 CAGCGGCGTG 0.644169 -164 CGAAAGCCTGCCGGCACAGGCGCGTAGTGTGAAC 14 137 0 CGGCACGGCG 0.686814 -71 ATCTCACCGCCGGGCGTTCCGGTGAATCCGGTCC 15 115 1 CGGCGTCGTG 0.523666 -87 AGCTGAACCTCAGTGGAAGGTGTGCCC 15 185 1 CGTGGAGGTG 0.904154 -17 TAGCTGGGCACTGGGGCCAGGGCGCGGTGTTTCG 17 31 1 CGGGGCGGCG 0.962795 -270 CAGCTGAATTCCATCGAAACACCGCGCCCTGGCC 17 45 0 CATCGACCCG 0.349677 -256 ACGCTGACGCCGGTTGATGCTGTGAGTCGGGCAC 17 97 1 CGTTGACGTG 0.500149 -204 AGACGTGCAACGGTGGATGGCGTGTGCTGCATTA 17 197 1 CGTGGAGGTG 0.870064 -104 TCACGGGCGCCAGTGTATCCAGCGAGCCGCTCCC 17 245 0 CGTGTACGCG 0.378996 -56 ACAATGTGATCGGCGCCACCCGCGAGGGCGGCCG 18 59 0 CGCGCCCGCG 0.706707 -242 CCCCCGGCAGGATTCGAACCTGCGGCCTTCTGCT 18 127 1 GTTCGACGCG 0.398668 -174 CCCCGTAGCTCAGGGGATAGAGCGTCTGCCTCCG 18 162 0 CGGGGAGGCG 0.95968 -139 TGGCGATCGCAAGCGCGGCGGAGCCGG 19 4 1 CATCGCGGCG 0.966208 -214 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGTCGGC 19 19 1 CGAGCCGGCG 0.687103 -199 GATCGCCACCCAATCCAAACCGTGCCGACCCGCC 19 42 0 CATCCACGTG 0.803059 -176 GATTGGGTGGCGATCGCAAGCGCGGCGGAGCCGG 19 61 1 CATCGCGGCG 0.966208 -157 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGTCGGC 19 76 1 CGAGCCGGCG 0.687103 -142 GATCGCCACCCAATCCAAACCGTGCCGACCCGCC 19 99 0 CATCCACGTG 0.803059 -119 GATTGGGTGGCGATCGCAAGCGCGGCGGAGCCGG 19 118 1 CATCGCGGCG 0.966208 -100 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGTCGGC 19 133 1 CGAGCCGGCG 0.687103 -85 GATCGCCACCCAATCCAAACCGTGCCGACCCGCC 19 156 0 CATCCACGTG 0.803059 -62 GATTGGGTGGCGATCGCAAGCGCGGCGGAGCCGG 19 175 1 CATCGCGGCG 0.966208 -43 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGTCGGC 19 190 1 CGAGCCGGCG 0.687103 -28 CCGTACCGTACTGTTGAATCCGCGGATCCCCGCC 20 53 1 CGTTGACGCG 0.758323 -86 AGCGCGGCGACGATGCGCGCCGCGACGGCGAGCA 21 74 1 CATGCGCGCG 0.642844 -227 GAGCCTGCCGCGTGCGATTCTGTGTCTGTTCGCG 22 24 0 CTGCGACGTG 0.620846 -29 TGCTACGGTAGCGGCCCGTCGGCGGCGACCGCCG 25 22 1 GGGCCCCGCG 0.727391 -279 CGACGACGGACAGTCGATAGAGCGTCGCTGGACG 25 77 0 CGTCGAGGCG 0.983007 -224 CGGTACCGGGCAGGTGACCGGGTGCTTTACGGCG 25 160 0 CGGTGAGGTG 0.476926 -141 GATGGGTTTTCGATCACCGGTGTGGGCGATCGGT 25 190 0 CATCACGGTG 0.274154 -111 CCGAGTGCTACCGTCGAACGCGTGCTGTCCGGCG 28 13 0 CGTCGAGGTG 0.95063 -202 CGTCGACCCCGATTCGCGCGGGCGGAAAGCGTTG 28 52 1 GTTCGCGGCG 0.441097 -163 GCTTAGACGGCGGGGGCTCGGGTGGTACCCATCG 29 19 1 CGGGGCGGTG 0.878762 -184 AGCTCGGCGACGATGCACGCCGCGCAGCGGCGTG 29 109 0 CATGCACGCG 0.861199 -94 AGCTCGGCGACGATGCACGCCGCGCAGCGGCGTG 29 167 0 CATGCACGCG 0.861199 -36 GGGTGCTCCTCCTCGGACGCCGCGACGGGGTCTG 30 90 0 CTCGGACGCG 0.330816 -167 CGTTGACTCTGCGTCCACCGTGTGGGCTACTCGC 30 146 1 GGTCCAGGTG 0.520596 -111 CTGCGTCCACCACGGGAATGTGCGAGTAGCCCAC 30 167 0 CCGGGAGGCG 0.652647 -90 * ***** * *** Masking position 12 Map Score: 72.2579 Number of sites scoring better than the average of aligned sites = 22878 Number in coding regions = 21348 Number in noncoding regions = 1530 Number of orfs with sites within 600 bp upstream = 871 Fraction of orfs with sites within 600 bp upstream = 0.139897 Motif number 5 ACTCAGCGCTGCCGCCGATCGGCACTGCGACA 1 68 0 GCCCGATCGG 0.891211 -233 CTGGAATCTTCCGGGCGGTCGG 1 289 1 CCGCGGTCGG 0.543031 -12 CTACACCTTCGGTCAGGCACGGTCGGTGCGAC 2 25 0 GGTGGCACGG 0.595305 -276 CTTGTCTGAACCGCACGATCGAACTGTTGGCG 2 161 1 CCGCGATCGA 0.503626 -140 ATTTGGCCGGGCAGCCGATTGCTCCGGGAACA 2 235 1 GCACGATTGC 0.226922 -66 TGCGCCCAGTCGCCTGGCTCGCGGCAGCGACG 3 83 0 CGCGGCTCGC 0.802501 -218 TCATCAAGTTCGGATGGCTTGGGTTATCAGGT 3 167 1 CGGGGCTTGG 0.462538 -134 CAGCTCACCCTCTCGCTCGGTCGTTGCTCG 3 281 0 CCTCGCTCGG 0.946293 -20 CGAAGTGATTCCTCCGGATCGGGGATGAAACG 5 13 1 CCTGGATCGG 0.899177 -281 AGTTGTCCTCGCTGCCACTCGCTGCGACGACG 5 114 1 GCTCACTCGC 0.583022 -180 AGCACTCACCGGTCGCGAGTGCCAACGTTATT 5 170 1 GGTCGAGTGC 0.104428 -124 CTCGGTTCCGGGTGCCGACCGGTAATCGTTG 8 10 0 GGTCGACCGG 0.746177 -28 ACCGAGGTGTGCGTCCGCACGGGTATCGAACA 14 24 1 GCGCGCACGG 0.538851 -184 GGCAGGCTTTCGTTCCGCTCGAGTCGCCGCGG 14 159 1 CGTCGCTCGA 0.607798 -49 GCCGCGGTTCGGTACCCCTCACTACCCTGATG 14 184 1 GGTCCCTCAC 0.148185 -24 GACTACAGTACCTGAGGACCGGATTCACCGGA 15 132 0 CCTGGACCGG 0.474875 -70 GGCACTAGTGGCTGCCGTTTGCGGTGCAGACG 17 170 1 GCTCGTTTGC 0.115159 -131 AATCAGCCCGGGAGCGGCTCGCTGGATACACT 17 236 1 GGAGGCTCGC 0.77737 -65 GACTGCTGCACCTGACGCTCGCACTACCGCGG 17 277 1 CCTCGCTCGC 0.949217 -24 TTGGCTTCGTGGTCTCGCTCTCAAATTCGTCG 18 22 0 GGTCGCTCTC 0.445988 -279 GCTCCGCCGCGCTTGCGATCGCCA 19 3 0 GCTCGATCGC 0.953181 -215 GGAGCCGGGTGCGGCGGGTCGGCACGGTTTGG 19 30 1 GCGGGGTCGG 0.810453 -188 GTTTGGATTGGGTGGCGATCGCAAGCGCGGCG 19 56 1 GGTCGATCGC 0.966642 -162 GGAGCCGGGTGCGGCGGGTCGGCACGGTTTGG 19 87 1 GCGGGGTCGG 0.810453 -131 GTTTGGATTGGGTGGCGATCGCAAGCGCGGCG 19 113 1 GGTCGATCGC 0.966642 -105 GGAGCCGGGTGCGGCGGGTCGGCACGGTTTGG 19 144 1 GCGGGGTCGG 0.810453 -74 GTTTGGATTGGGTGGCGATCGCAAGCGCGGCG 19 170 1 GGTCGATCGC 0.966642 -48 GGAGCCGGGTGCGGCGGGTCGGCACGC 19 201 1 GCGGGGTCGG 0.810453 -17 CGCGCATCGTCGCCGCGCTCGGCCTT 21 5 0 CGCCGCTCGG 0.870752 -296 CGCGCATCGTCGCCGCGCTCGGCCTTATCGCG 21 61 0 CGCCGCTCGG 0.870752 -240 GATAGTTAACCGGGAGCATCGCGCCCATCGAA 21 226 1 CGGGCATCGC 0.530215 -75 AGGAGACCCAGGTCCCGATCGCTACCATGACT 24 103 1 GGTCGATCGC 0.96671 -79 TCCCTTCGAGGGATCGGGCAGACGCGC 24 165 0 TCGGGATCGG 0.289657 -17 TCACCTGCCCGGTACCGATCGCCCACACCGGT 25 177 1 GGTCGATCGC 0.966446 -124 TTGGACGTGTCGAAACGATCGCGACCATGCTA 25 261 0 CGACGATCGC 0.717232 -40 CGCGTTCGACGGTAGCACTCGGCCAGCCGTCG 28 25 1 GGTCACTCGG 0.60693 -190 AGCTTAGACGGCGGGGGCTCGGGTGGTACCCA 29 18 1 GCGGGCTCGG 0.805951 -185 GGGCTCGGGTGGTACCCATCGCGCCGCGCTGC 29 32 1 GGTCCATCGC 0.780585 -171 GAACCTCAGACCGGCGCATCGCGAACGTCCCG 30 37 1 CCGGCATCGC 0.472667 -220 ACGGGAAGCCGGTCTGGATCAGACCCCGTCGC 30 71 1 GGTGGATCAG 0.400101 -186 *** ******* Masking position 11 Map Score: 41.6164 Number of sites scoring better than the average of aligned sites = 14850 Number in coding regions = 13649 Number in noncoding regions = 1201 Number of orfs with sites within 600 bp upstream = 699 Fraction of orfs with sites within 600 bp upstream = 0.112271 Motif number 6 CTGGTGGGCCGGCGATAACGTCGAAAGGTGCG 1 10 1 CGGCATAGTC 0.683202 -291 TGCGACAACGCGCCAACACGGTCACCCAATACC 1 42 0 CGCCACAGTC 0.924487 -259 ACAGAGTCACGGGGTGCAAAGTCGAATCGACTC 1 96 0 GGGGGCAGTC 0.981162 -205 AAGGTGGCGGTGGGAACAGAGTCACGGGGTGCA 1 111 0 TGGGACAGTC 0.835938 -190 GACAATGACAGGCCCACGCTGGCGAGGGTTTAC 1 227 1 GGCCACGGGC 0.712687 -74 GAGACAGGGACGGTCGCACCGACCGTGCCTGAC 2 13 1 CGGTGCAGAC 0.260534 -288 ATTCGGGTGGCGGCAACCATGTCGGAGCCGGAT 3 120 1 CGGCACCGTC 0.864241 -181 CGGATGGCTTGGGTTATCAGGTCACTCAGTTGC 3 177 1 GGGTATCGTC 0.165176 -124 TTACGCTGGCCGGGCGCAGTGCCCGCGACGGAC 5 75 1 CGGGGCAGCC 0.639045 -219 ACGACGGGCCTGGCCTCACCGTCCCGACCTAGC 5 140 1 TGGCTCAGTC 0.492559 -154 ATCGGAGGGCCGAGGACACGGTCGAACGAGGGG 5 250 0 CGAGACAGTC 0.3877 -44 ACTACCGCCGGGGCCACAATGGCTTCC 6 5 0 GGGCACAGGC 0.959357 -63 ACCGCGGAAGGGGGATCACGGTCTACGACCTTA 7 17 0 GGGGTCAGTC 0.716414 -43 GGAGGCCTAAGGGTCACTAGGTCCGCGCGATGG 10 24 0 GGGTACTGTC 0.349876 -150 CGCCACCGTACGCCAGCATTGGCAAAC 11 14 1 CGCCGCAGGC 0.954942 -17 ATCCGCAAGGCCGCTACACCGTCCTGACCGATG 12 108 0 CCGCACAGTC 0.330168 -94 GTAGCGGCCTTGCGGATACGGTCTCGATGAGGC 12 124 1 TGCGATAGTC 0.237379 -78 CGCGTAGCGTCGCTGGCAGAGTCCGACGAAAGG 13 268 1 CGCTGCAGTC 0.848315 -33 GCTGGTGGCTGGGTCATAGTGTCGCCAAGGGTC 14 84 0 GGGTATAGTC 0.392519 -124 CAAGCTCACATGCAAGCCCTGGCTGGTGGCTGG 14 105 0 TGCAGCCGGC 0.288241 -103 AACGAAAGCCTGCCGGCACAGGCGCGTAGTGTG 14 140 0 TGCCGCAGGC 0.892149 -68 CCCACGACCTGTGCGGCACTGGCCGCCTGCCGT 15 56 0 GTGCGCAGGC 0.482222 -146 ACGGTCGGGTGGGCAGTGCAGTCCCGGA 16 6 0 GGGCGTGGTC 0.605587 -26 TGGGCTTAGCTGGGCACTGGGGCCAGGGCGCGG 17 25 1 TGGGACTGGC 0.236054 -276 GTGACCTACGTGGCAGCTGGGGCACTAGTGGCT 17 150 1 TGGCGCTGGC 0.548254 -151 AGCGGCTCGCTGGATACACTGGCGCCCGTGACT 17 248 1 TGGAACAGGC 0.476587 -53 CCCGCGAGGGCGGCCGCATAGTTGGCTTCGTGG 18 42 0 CGGCGCAGTT 0.835622 -259 AATCCTGCCGGGGGCACAAGGGTTGATCTAGCC 18 108 0 GGGGACAGGT 0.595069 -193 CGTAGCTCAGGGGATAGAGCGTCTGCCTCCGGA 18 160 0 GGGAAGAGTC 0.214226 -141 CTACTCTGGCGGGGCCCCATGGCGCAACGTGTC 18 205 0 GGGGCCCGGC 0.456484 -96 GGGTGCGGCGGGTCGGCACGGTTTGGATTGGGT 19 36 1 GGTCGCAGTT 0.426672 -182 GGGTGCGGCGGGTCGGCACGGTTTGGATTGGGT 19 93 1 GGTCGCAGTT 0.426672 -125 GGGTGCGGCGGGTCGGCACGGTTTGGATTGGGT 19 150 1 GGTCGCAGTT 0.426672 -68 GTCGCGCCCCGGGCAATAGCGTCGCCGGTTATC 20 103 1 GGGCATAGTC 0.777215 -36 CCGCCGTCCCGGCGCGCATCGTCGCCGCGCTCG 21 16 0 GGCGGCAGTC 0.968422 -285 TCGCCGTCGCGGCGCGCATCGTCGCCGCGCTCG 21 72 0 GGCGGCAGTC 0.968422 -229 ATTATTTGCCGGCCAGCAACGTCACGGCTGCGT 21 111 1 GGCCGCAGTC 0.979934 -190 CGGCGGCGACCGCCGCCAGCGTCGCTGACCGCT 25 41 1 CGCCCCAGTC 0.693762 -260 ACGTCCTGCTGGGTAGCCAGGTCGTCAACATCC 25 111 1 GGGTGCCGTC 0.82469 -190 CGGTACCGATCGCCCACACCGGTGATCGAAAAC 25 186 1 CGCCACAGGT 0.46003 -115 ACGTGCGCCCCGATAGCATGGTCGCGATCGTTT 25 248 1 CGATGCAGTC 0.315359 -53 TGGGGCCGTACCGGTTGGGCCCCAT 27 3 1 GGGCGTAGGT 0.374514 -35 GGAAAGCGTTGGTCTGCAACGGCCCGCCGGCGG 28 75 1 GGTCGCAGGC 0.840474 -140 TGCAACGGCCCGCCGGCGGAGTCTGGCATTTAC 28 89 1 CGCCGCGGTC 0.843464 -126 TCAGGCTGGCGGCAGGCCTGGTCCTACAAACCG 28 124 0 GGCAGCCGTC 0.70502 -91 GCCGCTGCGCGGCGTGCATCGTCGCCGAGCTGT 29 112 1 GGCGGCAGTC 0.968422 -91 GCCGCTGCGCGGCGTGCATCGTCGCCGAGCTAG 29 170 1 GGCGGCAGTC 0.968422 -33 GCCCACACGGTGGACGCAGAGTCAACGTGTAAA 30 140 0 TGGAGCAGTC 0.761879 -117 ATTCCCGTGGTGGACGCAGAGTCAGCGCAGGCC 30 182 1 TGGAGCAGTC 0.761879 -75 TCCAGAATAGGGGGCGCGCCGGCCTGCGCTGAC 30 202 0 GGGGGCGGGC 0.867085 -55 CATGCGGCCCCGCCGACCCTGTCAGAATGGAGC 31 13 0 CGCCACCGTC 0.789426 -120 CGCTTCATCGCGGGTGGATGGTCCTCTGCCGCC 31 76 1 CGGGGGAGTC 0.620149 -57 **** *** *** Masking position 11 Map Score: 54.0793 Number of sites scoring better than the average of aligned sites = 22341 Number in coding regions = 21178 Number in noncoding regions = 1163 Number of orfs with sites within 600 bp upstream = 723 Fraction of orfs with sites within 600 bp upstream = 0.116126 Motif number 7 TCAGCGCTGCCGCCGATCGGCACTGCGACA 1 68 0 CGCCGATCGG 0.63746 -233 CGGGACATTTGTCCGGACAGCTGGAATCTT 1 269 1 GTCCGGACAG 0.659652 -32 CGCTCTACACCTTCGGTCAGGCACGGTCGG 2 31 0 CTTCGGTCAG 0.69177 -270 GCCCGGATCGCGCCGGGCTGGTTGCGCCCT 2 110 0 CGCCGGGCTG 0.985751 -191 ATGCCCATTTGGCCGGGCAGCCGATTGCTC 2 229 1 GGCCGGGCAG 0.962314 -72 CAGCTCAGTCCGGTCTGTTCGGCGTAC 2 284 0 GTCCGGTCTG 0.812187 -17 ACCCTGCGCGGACCGGACAGCTTCGGCAAA 3 52 0 GACCGGACAG 0.659652 -249 GCAGTGCCCGCGACGGACGGCTCAAGTTGT 5 90 1 CGACGGACGG 0.794955 -204 CGCGCTGGTCAGCTGCCATGAC 7 48 0 CGCTGGTCAG 0.91 -12 GTCGAGTGCTCGTCGGCCTGACCCAGTAGG 9 28 0 CGTCGGCCTG 0.899704 -36 GCAGGAGGCAAGCCAGTCTGCTAAACATGC 12 36 1 AGCCAGTCTG 0.150965 -166 GCCCCTGGTGCATCGGTCAGGACGGTGTAG 12 98 1 CATCGGTCAG 0.69177 -104 ACGCCGGCCGGTCCTTCTCAC 13 2 1 CGCCGGCCGG 0.965171 -299 GCGCGCCTAGCGCCGGTGAGCCGTGCCGGC 13 241 0 CGCCGGTGAG 0.890168 -60 AAGATCCTTTCGTCGGACTCTGCCAGCGAC 13 276 0 CGTCGGACTC 0.40245 -25 CGGACGGTCGGGTGGGCAGTG 16 21 0 GGACGGTCGG 0.76149 -11 GAATCCGTTGCGGTGGTCAGTGGGTAGCCG 18 245 0 CGGTGGTCAG 0.61502 -56 CGCGCCGGGACGGCGGGCTGAGGAGGCGCG 21 33 1 CGGCGGGCTG 0.916175 -268 ATCCATTATTTGCCGGCCAGCAACGTCACG 21 107 1 TGCCGGCCAG 0.62887 -194 GCTGGACGGGGAGCGGTCAGCGACGCTGGC 25 55 0 GAGCGGTCAG 0.405913 -246 GATAGAGCGTCGCTGGACGGGGAGCGGTCA 25 66 0 CGCTGGACGG 0.72838 -235 AGGACGTCGACGACGGACAGTCGATAGAGC 25 88 0 CGACGGACAG 0.86758 -213 GGTTTTCGATCACCGGTGTGGGCGATCGGT 25 190 0 CACCGGTGTG 0.459438 -111 CGGGTCGGTCTCCAAGGCTTGG 25 289 0 GGTCGGTCTC 0.356759 -12 CCCGCCGGACAGCACGCGTTCG 28 3 1 CGCCGGACAG 0.980421 -212 GGGCGGAAAGCGTTGGTCTGCAACGGCCCG 28 71 1 CGTTGGTCTG 0.659492 -144 CTGGCATTTACGACGGTTTGTAGGACCAGG 28 111 1 CGACGGTTTG 0.279939 -104 TTTTGGCCCGGTCCGGGCTGGATGTTTGGA 28 187 1 GTCCGGGCTG 0.728095 -28 CGACGATGCACGCCGCGCAGCGGCGTGAGG 29 106 0 CGCCGCGCAG 0.833741 -97 CGACGATGCACGCCGCGCAGCGGCGTGAGG 29 164 0 CGCCGCGCAG 0.833741 -39 GTTCGCGATGCGCCGGTCTGAGGTTCCTTC 30 33 0 CGCCGGTCTG 0.991129 -224 CGCGACGGGAAGCCGGTCTGGATCAGACCC 30 67 1 AGCCGGTCTG 0.876979 -190 ATAGGGGGCGCGCCGGCCTGCGCTGACTCT 30 199 0 CGCCGGCCTG 0.979093 -58 ********** Masking position 5 Map Score: 41.4248 Number of sites scoring better than the average of aligned sites = 12037 Number in coding regions = 11366 Number in noncoding regions = 671 Number of orfs with sites within 600 bp upstream = 479 Fraction of orfs with sites within 600 bp upstream = 0.0769354 Motif number 8 CCGGACAAATGTCCCGCAGGCTGCGGTAAA 1 255 0 GTCCCGCAGG 0.871179 -46 ACGAGCCCGGATCGCGCCGGGCTGGTTGCG 2 114 0 ATCGCGCCGG 0.668382 -187 AACGATGTCGCGGCCGCCGGATGCCCATTT 2 209 1 CGGCCGCCGG 0.852325 -92 CGGGCAGCCGATTGCTCCGGGAACACCCTT 2 242 1 ATTGCTCCGG 0.530654 -59 ACGGAGCTTCGTGCCGCAGGTTGGGTGCAC 4 30 0 GTGCCGCAGG 0.935799 -31 TGCGAAGTGATTCCTCCGGATCGGGGATG 5 10 1 ATTCCTCCGG 0.628027 -284 GGAAGCCATTGTGGCCCCGGCGGTAGTGTG 6 11 1 GTGGCCCCGG 0.961203 -57 GCGACGCGACGTGGCCCCTGGTGCATCGGT 12 85 1 GTGGCCCCTG 0.3749 -117 CTACGCGCGCCTAGCGCCGGTGAGCCGTGC 13 245 0 CTAGCGCCGG 0.603647 -56 ATCGAACACGGTACCGCTGGTACCGGGAAT 14 48 1 GTACCGCTGG 0.628134 -160 GCAGGCTTTCGTTCCGCTCGAGTCGCCGCG 14 160 1 GTTCCGCTCG 0.140311 -48 CGCGCAGGCAGGCGCGCCGCAATTTAGTTC 15 12 1 GGCGCGCCGC 0.882689 -190 CGGTGAATCCGGTCCTCAGGTACTGTAGTC 15 134 1 GGTCCTCAGG 0.736889 -68 AGCCCAGGGGGTACCCCCGG 17 1 0 GTACCCCCGG 0.915021 -300 GCAGCCACTAGTGCCCCAGCTGCCACGTAG 17 155 0 GTGCCCCAGC 0.789978 -146 GCCCTCGCGGGTGGCGCCGATCACATTGTT 18 64 1 GTGGCGCCGA 0.616033 -237 ATCAACCCTTGTGCCCCCGGCAGGATTCGA 18 114 1 GTGCCCCCGG 0.9737 -187 CCGGAGCAGAAGGCCGCAGGTTCGAATCCT 18 135 0 AGGCCGCAGG 0.502169 -166 GATAGAGCGTCTGCCTCCGGAGCAGAAGGC 18 151 0 CTGCCTCCGG 0.722321 -150 GTGCGCCCCCGTAGCTCAGGGGATAGAGCG 18 172 0 GTAGCTCAGG 0.485242 -129 GTTGCGCCATGGGGCCCCGCCAGAGTAGCG 18 210 1 GGGGCCCCGC 0.896986 -91 GCCGCACCCGGCTCCGCCGCGCTTGCGATC 19 15 0 GCTCCGCCGC 0.890354 -203 GCCGCACCCGGCTCCGCCGCGCTTGCGATC 19 72 0 GCTCCGCCGC 0.890354 -146 GCCGCACCCGGCTCCGCCGCGCTTGCGATC 19 129 0 GCTCCGCCGC 0.890354 -89 GCCGCACCCGGCTCCGCCGCGCTTGCGATC 19 186 0 GCTCCGCCGC 0.890354 -32 ACACCACAACGGTGCCCAGCCATTCGCACC 20 17 0 GGTGCCCAGC 0.592945 -122 ACCACGCCCCGTACCTCAGGCGGGGATCCG 20 75 0 GTACCTCAGG 0.584663 -64 CCGAGAGTTCCCCCGCGAACAGACAC 22 7 1 GTTCCCCCGC 0.933343 -46 GATTTGCGAGTTGCTACGGTAGCGGCCCG 25 10 1 GTTGCTACGG 0.220783 -291 GGTCTGCAACGGCCCGCCGGCGGAGTCTGG 28 85 1 GGCCCGCCGG 0.959533 -130 GGTACCACCCGAGCCCCCGCCGTCTAAGCT 29 18 0 GAGCCCCCGC 0.670167 -185 GGTAGTTGCTCCGGGATGGTGAGA 30 5 1 GTTGCTCCGG 0.923457 -252 GGACGTTCGCGATGCGCCGGTCTGAGGTTC 30 37 0 GATGCGCCGG 0.801762 -220 CAGAATAGGGGGCGCGCCGGCCTGCGCTGA 30 203 0 GGCGCGCCGG 0.94053 -54 GCGGGTGGATGGTCCTCTGCCGCCACCCTG 31 85 1 GGTCCTCTGC 0.349929 -48 ********** Masking position 5 Map Score: 45.3292 Number of sites scoring better than the average of aligned sites = 15800 Number in coding regions = 14796 Number in noncoding regions = 1004 Number of orfs with sites within 600 bp upstream = 685 Fraction of orfs with sites within 600 bp upstream = 0.110022 Motif number 9 ACTCAGCGCTGCCGCCGATCGGCACTGCGA 1 70 0 GCCGCCGATC 0.683536 -231 TGCCCATTTGGCCGGGCAGCCGATTGCTCC 2 230 1 GCCGGGCAGC 0.612564 -71 TGACGACCCAGCCACGCAGCGC 3 3 0 GCCACGCAGC 0.620006 -298 TGACCGCTTAGCCATCCATCCGGCTCCGAC 3 140 0 GCCATCCATC 0.756278 -161 AAATAATTGAGCCGAGCAACGACCGAGCGA 3 269 1 GCCGAGCAAC 0.768595 -32 CGATCCTAGTGCCGTGCACCCAACCTGCGG 4 17 1 GCCGTGCACC 0.981779 -44 GACAACTTGAGCCGTCCGTCGCGGGCACTG 5 91 0 GCCGTCCGTC 0.774204 -203 AGTGCAAGAAGCCCCGCACCGGGTCATGCC 5 222 1 GCCCCGCACC 0.90089 -72 CCTCGTGTTCCGCCCATCGCGCGGACCT 10 9 1 TCCGCCCATC 0.684937 -165 TACCCGTGCGGACGCACACCTCGGTGGGGA 14 19 0 GACGCACACC 0.464096 -189 TTGCGGTGCAGACGTGCAACGGTGGATGGC 17 188 1 GACGTGCAAC 0.81998 -113 TGCAGCACACGCCATCCACCGTTGCACGTC 17 198 0 GCCATCCACC 0.820192 -103 GAACGTCCATCCTATGGGCTG 18 290 0 AACGTCCATC 0.206674 -11 CCGCCGTCCCGGCGCGCATCGTCGCCGCGC 21 19 0 GGCGCGCATC 0.949229 -282 TCGCCGTCGCGGCGCGCATCGTCGCCGCGC 21 75 0 GGCGCGCATC 0.949229 -226 GCGCCGCGACGGCGAGCATCCATTATTTGC 21 90 1 GGCGAGCATC 0.867716 -211 ATTATTTGCCGGCCAGCAACGTCACGGCTG 21 111 1 GGCCAGCAAC 0.283481 -190 TATTGCCTTTGACATGCATCATCATGCATG 24 74 0 GACATGCATC 0.610004 -108 TACGGTCGTCGACGTGCGCCCCGATAGCAT 25 237 1 GACGTGCGCC 0.617862 -64 CACTCGGCCAGCCGTCGACCCCGATTCGCG 28 40 1 GCCGTCGACC 0.751917 -175 GCTTGACGATGACCCGCACCGCAGCGCGGC 29 54 0 GACCCGCACC 0.742166 -149 GCCGCTGCGCGGCGTGCATCGTCGCCGAGC 29 112 1 GGCGTGCATC 0.965057 -91 GAGGAGCCGAGCAGTCCAACACAGCTCGGC 29 135 0 GCAGTCCAAC 0.216961 -68 GCCGCTGCGCGGCGTGCATCGTCGCCGAGC 29 170 1 GGCGTGCATC 0.965057 -33 ACGTTGACTCTGCGTCCACCGTGTGGGCTA 30 145 1 TGCGTCCACC 0.696909 -112 GCGCTGACTCTGCGTCCACCACGGGAATGT 30 180 0 TGCGTCCACC 0.696909 -77 AGCGCAGGCCGGCGCGCCCCCTATTCTGGA 30 205 1 GGCGCGCCCC 0.744736 -52 ********** Masking position 10 Map Score: 26.2424 Number of sites scoring better than the average of aligned sites = 9432 Number in coding regions = 8829 Number in noncoding regions = 603 Number of orfs with sites within 600 bp upstream = 496 Fraction of orfs with sites within 600 bp upstream = 0.0796659 Motif number 10 GGGCCGAACATACTCACCCGGATCGGAG 5 276 0 CATACTCACC 0.581936 -18 GCCGGCCGGTCCTTCTCACCTAGTGCCGGC 13 13 1 CCTTCTCACC 0.965275 -288 TCGAAGCCTCCCCACCGAGGTGTGCG 14 7 1 CCTCCCCACC 0.973743 -201 CCGAGGTGTGCGTCCGCACGGGTATCGAAC 14 25 1 CGTCCGCACG 0.852735 -183 CGAAGCCCAACCACCTCAGCCCATAGGATG 18 274 1 CCACCTCAGC 0.779232 -27 CCGTGCCGACCCGCCGCACCCGGCTCCGCC 19 27 0 CCGCCGCACC 0.99299 -191 CCGTGCCGACCCGCCGCACCCGGCTCCGCC 19 84 0 CCGCCGCACC 0.99299 -134 CCGTGCCGACCCGCCGCACCCGGCTCCGCC 19 141 0 CCGCCGCACC 0.99299 -77 GCGTGCCGACCCGCCGCACCCGGCTCCGCC 19 198 0 CCGCCGCACC 0.99299 -20 GGTGCCCAGCCATTCGCACCGCTGAC 20 7 0 CATTCGCACC 0.82933 -132 TTATCGCGCGCCTCCTCAGCCCGCCGTCCC 21 39 0 CCTCCTCAGC 0.961663 -262 CTGCTCGGCTCCTCCTCACGCCGCTGCGCG 29 93 1 CCTCCTCACG 0.975489 -110 CTGCTCGGCTCCTCCTCACGCCGCTGCGCG 29 151 1 CCTCCTCACG 0.975489 -52 GTCTGAGGTTCCTTCTCACCATCCCGGAGC 30 18 0 CCTTCTCACC 0.965275 -239 ********** Masking position 8 Map Score: 28.4892 Number of sites scoring better than the average of aligned sites = 539 Number in coding regions = 484 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 11 CTGGTGGGCCGGCGATAACGTCGAAA 1 6 1 GGGCCGGGAT 0.907437 -295 TCGCCAGCGTGGGCCTGTCATTGTCCGTATC 1 221 0 GGGCCTGCAT 0.957699 -80 AACCCTGCGCGGACCGGACAGCTTCGGCAAA 3 52 0 GGACCGGCAG 0.878174 -249 CCGGACCGATCCTAGTGCCGTGC 4 3 1 GGACCGACCT 0.890051 -58 CTGCGACGACGGGCCTGGCCTCACCGTCCCG 5 135 1 GGGCCTGCCT 0.879356 -159 GTCGAACGAGGGGCATGACCCGGTGCGGGGC 5 232 0 GGGCATGCCC 0.768577 -62 CCGGATCGGAGGGCCGAGGACACGGTCGAAC 5 256 0 GGGCCGAGAC 0.761901 -38 GGGCCGAACATACTCACCCGG 5 283 0 GGGCCGACAT 0.890328 -11 TCGGTTGTCGGACTTGACCTACTGGGTCAG 9 10 1 GGACTTGCCT 0.513303 -54 GAGTGCTCGTCGGCCTGACCCAGTAGGTCAA 9 24 0 CGGCCTGCCC 0.852631 -40 TCCGCGCGATGGGCGGAACACGAGG 10 5 0 GGGCGGACAC 0.529272 -169 ACGCCGGCCGGTCCTTCTCACCTAG 13 5 1 CGGCCGGCCT 0.905919 -296 CAGTACCTGAGGACCGGATTCACCGGAACGC 15 128 0 GGACCGGTTC 0.613545 -74 GTACGGTACGGGACCGGACACCACAACGGTG 20 33 0 GGACCGGCAC 0.984006 -106 GTATTAGGAAGGACCTGCCACTGACCTCCAC 24 38 1 GGACCTGCAC 0.965581 -144 GTAGCGATCGGGACCTGGGTCTCCTATTGCC 24 97 0 GGACCTGGTC 0.741613 -85 CGGGTCGGTCTCCAAGGCTTGG 25 289 0 GGGTCGGCTC 0.683384 -12 ACGGTTTGTAGGACCAGGCCTGCCGCCAGCC 28 123 1 GGACCAGCCT 0.753567 -92 CATCCAGCCCGGACCGGGCCAAAACCCAGTA 28 180 0 GGACCGGCCA 0.885392 -35 CCCCTATTCTGGACCTGTCTCCAATCTTCCC 30 222 1 GGACCTGCTC 0.935734 -35 ******* *** Masking position 2 Map Score: 18.9861 Number of sites scoring better than the average of aligned sites = 4368 Number in coding regions = 4036 Number in noncoding regions = 332 Number of orfs with sites within 600 bp upstream = 248 Fraction of orfs with sites within 600 bp upstream = 0.039833 Motif number 12 TGTGGATACGGACAATGACAGGCCCACGCTGG 1 217 1 GACAAACAGG 0.726603 -84 TCTTCAGCCTGTCAACGGTAGCGTCTACGCTA 10 114 0 GTCAAGTAGC 0.93813 -60 TGCCACGTAGGTCACGAGTAGCGGTGGGCGGT 17 133 0 GTCACGTAGC 0.840122 -168 TAGTGCGAGCGTCAGGTGCAGCAGTCACGGGC 17 271 0 GTCAGGCAGC 0.966651 -30 GCTACCCACTGACCACCGCAACGGATTCGAAG 18 247 1 GACCAGCAAC 0.732064 -54 TAGGCGTGTCGACAATTGCAGCCAGAGATGAG 21 144 0 GACAAGCAGC 0.979467 -157 GACAGTGGAGGTCAGTGGCAGGTCCTTCCTAA 24 41 0 GTCAGGCAGG 0.861679 -141 GATGATGCATGTCAAAGGCAATAGGAGACCCA 24 81 1 GTCAAGCAAT 0.678121 -101 GGATCGGGCAGACGCGCGCAGCCCGACACGAC 24 150 0 GACGCGCAGC 0.739453 -32 TCGTCAATTACAGCCGATACGCTA 26 3 1 GTCAAACAGC 0.955911 -27 GAGCCGAGCAGTCAAGCACAGCTTGACGATGA 29 72 0 GTCAAACAGC 0.955911 -131 GAGCCGAGCAGTCCAACACAGCTCGGCGACGA 29 130 0 GTCCAACAGC 0.872609 -73 CCCGCAAGCTGACAACTGCAACATTGGTCATG 31 42 0 GACAAGCAAC 0.896354 -91 CTGACTGGGCGTCAAAAGTAGTCTTGCGGCC 31 112 1 GTCAAGTAGT 0.678121 -21 ***** ***** Masking position 10 Map Score: 7.9299 Number of sites scoring better than the average of aligned sites = 1645 Number in coding regions = 1538 Number in noncoding regions = 107 Number of orfs with sites within 600 bp upstream = 99 Fraction of orfs with sites within 600 bp upstream = 0.0159011 Motif number 13 ACCTGAGAGTCTGCGGCGTCGCATCATGGC 2 63 0 CTGCGGCGTC 0.59024 -238 GCCGGGCTGGTTGCGCCCTCCCCGCTCTGT 2 99 0 TTGCGCCCTC 0.578378 -202 AGGGTGTTCCCGGAGCAATCGGCTGCCCGG 2 241 0 CGGAGCAATC 0.457787 -60 TTGATGACCGCTTAGCCATCCATCCGGCTC 3 144 0 CTTAGCCATC 0.635688 -157 ACCTGATAACCCAAGCCATCCGAACTTGAT 3 169 0 CCAAGCCATC 0.539432 -132 CGAGGACAACTTGAGCCGTCCGTCGCGGGC 5 95 0 TTGAGCCGTC 0.824225 -199 ACCGTCCCGACCTAGCACTCACCGGTCGCG 5 157 1 CCTAGCACTC 0.908788 -137 CAACGTTATTCTTAGCACTCGCCTATGCCG 5 192 1 CTTAGCACTC 0.785498 -102 GATCGGAGGGCCGAGGACACGGTCGAACGA 5 254 0 CCGAGGACAC 0.474515 -40 GCACCCGGAACCGAGCCGTTT 8 27 1 CCGAGCCGTT 0.754266 -11 GGTCAGGCCGACGAGCACTCGACCATTAGG 9 35 1 ACGAGCACTC 0.696621 -29 CCTAGTGACCCTTAGGCCTCCCGATACCTC 10 36 1 CTTAGGCCTC 0.694027 -138 TCTCTAACACTCGGGCCCTCAGTAATGGCT 21 268 1 TCGGGCCCTC 0.669758 -33 CCGAGGAGCCTGCCGCGTGC 22 43 0 CCGAGGAGCC 0.716831 -10 GCGCGTCTGCCCGATCCCTCGAAGGGA 24 165 1 CCGATCCCTC 0.813089 -17 TTTGGGCTCATCGAGCCGCCGTAAAGCACC 25 144 1 TCGAGCCGCC 0.80281 -157 TGAGAGGCATCTTAGCCCTCGATCAGGCTG 28 149 0 CTTAGCCCTC 0.897588 -66 TGGGTACCACCCGAGCCCCCGCCGTCTAAG 29 20 0 CCGAGCCCCC 0.970742 -183 TGAGGAGGAGCCGAGCAGTCAAGCACAGCT 29 81 0 CCGAGCAGTC 0.968407 -122 TGAGGAGGAGCCGAGCAGTCCAACACAGCT 29 139 0 CCGAGCAGTC 0.968407 -64 ********** Masking position 5 Map Score: 10.2829 Number of sites scoring better than the average of aligned sites = 5884 Number in coding regions = 5376 Number in noncoding regions = 508 Number of orfs with sites within 600 bp upstream = 421 Fraction of orfs with sites within 600 bp upstream = 0.0676197 Motif number 14 CACATTCACCCCCCACGCAAATACACCGCTC 1 190 0 CCCACGCAAA 0.974935 -111 GGCCCCTACCCTAATGGTCGAGTG 9 50 0 CCCACCCTAA 0.948344 -14 CTATCGCCCACCAGACGCAAAAGCTCTCGAC 13 210 0 CCAACGCAAA 0.857494 -91 GCGATCGCCACCCAATCCAAACCGTGCCGAC 19 47 0 CCCATCCAAA 0.979307 -171 GCGATCGCCACCCAATCCAAACCGTGCCGAC 19 104 0 CCCATCCAAA 0.979307 -114 GCGATCGCCACCCAATCCAAACCGTGCCGAC 19 161 0 CCCATCCAAA 0.979307 -57 *** ******* Masking position 5 Map Score: 3.41351 Number of sites scoring better than the average of aligned sites = 16 Number in coding regions = 10 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 15 AAGGTGGCGGTGGGAACAGAGTCACGGGGT 1 114 0 TGGGAACAGA 0.689742 -187 TGGAGACAGGGACGGTCGCA 2 1 1 TGGAGACAGG 0.944574 -300 GCCAGGCGACTGGGCGCATACCTATTCGGG 3 97 1 TGGGCGCATA 0.656015 -204 CATCATCGATTGGACACTTGTCCGATATTG 12 156 0 TGGACACTTG 0.473192 -46 AAGCCCTGGCTGGTGGCTGGGTCATAGTGT 14 95 0 TGGTGGCTGG 0.761003 -113 GCACAGGTCGTGGGCACTGACCCATTGGGC 15 75 1 TGGGCACTGA 0.84718 -127 TGGGCTTAGCTGGGCACTGGGGCCAGGGCG 17 25 1 TGGGCACTGG 0.886696 -276 GTGACCTACGTGGCAGCTGGGGCACTAGTG 17 150 1 TGGCAGCTGG 0.71356 -151 CCTTCTGCTCCGGAGGCAGACGCTCTATCC 18 152 1 CGGAGGCAGA 0.749634 -149 GTCCAAGCCTTGGAGACCGACCCG 25 287 1 TGGAGACCGA 0.715717 -14 TCGATCAGGCTGGCGGCAGGCCTGGTCCTA 28 131 0 TGGCGGCAGG 0.956861 -84 GCCCACACGGTGGACGCAGAGTCAACGTGT 30 143 0 TGGACGCAGA 0.949996 -114 ATTCCCGTGGTGGACGCAGAGTCAGCGCAG 30 182 1 TGGACGCAGA 0.949996 -75 CGGGGAAGATTGGAGACAGGTCCAGAATAG 30 225 0 TGGAGACAGG 0.944574 -32 CCAGTCAGGGTGGCGGCAGAGGACCATCCA 31 90 0 TGGCGGCAGA 0.940164 -43 ********** Masking position 7 Map Score: 10.5812 Number of sites scoring better than the average of aligned sites = 1820 Number in coding regions = 1677 Number in noncoding regions = 143 Number of orfs with sites within 600 bp upstream = 130 Fraction of orfs with sites within 600 bp upstream = 0.0208802