AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00300_mtub_reg_300.orf -o00300_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: Rv2758c 25 hypothetical protein Rv2758c Input sequences: #1 Rv0072 300 hypothetical protein Rv0072 #2 Rv0074 79 hypothetical protein Rv0074 #3 dapE 90 dapE #4 argS 300 argS #5 lysX 237 lysX #6 dapE2 300 dapE2 #7 murE 22 murE #8 hypothetical 267 hypothetical protein Rv2160c #9 Rv2161c 102 hypothetical protein Rv2161c #10 PE_PGRS 209 PE_PGRS #11 Rv2166c 300 hypothetical protein Rv2166c #12 Rv2294 294 hypothetical protein Rv2294 #13 dapF 24 dapF #14 Rv2728c 108 hypothetical protein Rv2728c #15 Rv2729c 66 hypothetical protein Rv2729c #16 dapA 68 dapA #17 Rv2754c 243 hypothetical protein Rv2754c #18 hsdM 86 hsdM #19 Rv2762c 73 hypothetical protein Rv2762c #20 dfrA 70 dfrA #21 thyA 164 thyA #22 Rv2774c 152 hypothetical protein Rv2774c #23 Rv3329 59 hypothetical protein Rv3329 #24 Rv3603c 184 hypothetical protein Rv3603c #25 ftsH 66 ftsH #26 ask 256 ask Motif number 1 GGACTTCGCACCGGTCACCGGGTG 1 5 0 CCGGTCACCG 0.856326 -296 GGTTGAGCCGCCGGTTGCCCACTGGTCGAT 1 40 0 CCGGTTGCCC 0.805727 -261 ATTCCGTTTGGCCGTCGGACCGTTTCCTTG 1 134 0 GCCGTCGGAC 0.851561 -167 CGGAATGGATCCCGCCACCCCACCTCGACC 1 158 1 CCCGCCACCC 0.929476 -143 TGTGGGCACCGCGGTCGAGGTGGGGTGGCG 1 170 0 GCGGTCGAGG 0.954346 -131 CGGCCCGCTAGTGGTCGAAGAGGCGTTCGG 1 218 0 GTGGTCGAAG 0.5115 -83 GTTTTGTGGTCAGGGCGCGGCCCGCTAGTG 1 235 0 CAGGGCGCGG 0.842537 -66 GTGGCTAGTTCCGGCCAAGCCGGG 2 5 0 CCGGCCAAGC 0.791907 -75 GCCGGAACTAGCCACTGCCGGGGCAGCGGT 2 20 1 GCCACTGCCG 0.670564 -60 TGCCGGGGCAGCGGTGGCGGTTCACACCGC 2 35 1 GCGGTGGCGG 0.973426 -45 GCTACTTGTGCCGCCGAACAGACACAAAA 3 10 1 GCCGCCGAAC 0.878042 -81 GCTAGCTTAGTTGGCCGAGCAGACGCAAAA 3 68 0 TTGGCCGAGC 0.499879 -23 CGCTCTCAAATTCGTCGGGGTAAGAACC 4 9 0 TTCGTCGGGG 0.563559 -292 AGTTGGCTTCGTGGTCTCGCTCTCAAATTC 4 26 0 GTGGTCTCGC 0.530726 -275 AGCCAACTATGCGGCCGCCCTCGCGGGTGG 4 48 1 GCGGCCGCCC 0.987891 -253 GGCCGCCCTCGCGGGTGGCGCCGATCACAT 4 60 1 GCGGGTGGCG 0.795395 -241 TCGAATCCTGCCGGGGGCACAAGGGTTGAT 4 114 0 CCGGGGGCAC 0.871016 -187 CCCCTGAGCTACGGGGGCGCACGACGACAC 4 180 1 ACGGGGGCGC 0.86738 -121 CTGGCGGGGCCCCATGGCGCAACGTGTCGT 4 203 0 CCCATGGCGC 0.784157 -98 ATGCGCTACTCTGGCGGGGCCCCATGGCGC 4 213 0 CTGGCGGGGC 0.770906 -88 GTAGCGCATCGCGGCTACCCACTGACCACC 4 234 1 GCGGCTACCC 0.638097 -67 GGGCTTCGAATCCGTTGCGGTGGTCAGTGG 4 252 0 TCCGTTGCGG 0.671255 -49 ATGGGCTGAGGTGGTTGGGCTTCGAATCCG 4 268 0 GTGGTTGGGC 0.527632 -33 GTCCAACAAGCTGGTCGCGCCTGGAACAGC 5 30 0 CTGGTCGCGC 0.958388 -208 CCCACCTGATTCCGGCCGGGTCCAACAAGC 5 49 0 TCCGGCCGGG 0.476295 -189 CCAATGCCGACCGATCGCGGCCAAAGCCGC 5 125 1 CCGATCGCGG 0.906198 -113 CGCGGCCAAAGCCGCCCACGCTGCACGCAG 5 140 1 GCCGCCCACG 0.716736 -98 GTTCAGCGGTCCGGTCACAGGCATCTCGGA 5 178 0 CCGGTCACAG 0.6788 -60 AGCCTTAGCTGCCAGCCCCGGTGGTTGGTT 6 48 0 GCCAGCCCCG 0.663013 -253 GCTAGGTTGGGCCGGTGCGGGGCAATCCGA 6 79 0 GCCGGTGCGG 0.979452 -222 GGGGCGCATCGTCGCCGAGCTAGGTTGGGC 6 97 0 GTCGCCGAGC 0.936987 -204 CACCCCGTTACCCGGGGCGCATCGTCGCCG 6 110 0 CCCGGGGCGC 0.973583 -191 GGGGCGCATCGTCGCCGAGCTCGATTTGAT 6 155 0 GTCGCCGAGC 0.936987 -146 CACCCCGTTACCCGGGGCGCATCGTCGCCG 6 168 0 CCCGGGGCGC 0.973583 -133 CCGGGCCCGCGTCGTCGCCGAGCTGGATTT 6 229 0 GTCGTCGCCG 0.958816 -72 CGGCGACGACGCGGGCCCGGCGCGCCAGGG 6 239 1 GCGGGCCCGG 0.50455 -62 CCCTGGCGAGCCGATCGCCCCTGGCGCGCC 6 257 0 CCGATCGCCC 0.785442 -44 GGGCGATCGGCTCGCCAGGGTTACGAGTGG 6 267 1 CTCGCCAGGG 0.743108 -34 CCTACCGACAGGGCGCGCACAC 7 5 0 CAGGGCGCGC 0.821879 -18 CCCGGGTTTGGCGGCCGACGTCGGCG 8 7 0 GCGGCCGACG 0.943929 -261 GCCGCCAAACCCGGGCGCAGATCCTGCGCG 8 22 1 CCGGGCGCAG 0.953656 -246 GGCGATATCCATCGCGGCGCGCAGGATCTG 8 39 0 ATCGCGGCGC 0.710684 -229 GGGGCTGTCCATCGGCGAGCTTGCCGGGCG 8 86 1 ATCGGCGAGC 0.62626 -182 CTCATGCCCAGCCGCCCGGCAAGCTCGCCG 8 98 0 GCCGCCCGGC 0.528246 -170 GCAGCTGCAGCTGGCGACCGTCGAGGCCGC 8 164 1 CTGGCGACCG 0.522847 -104 GGCGACCGTCGAGGCCGCCGTGAGCGTGTT 8 176 1 GAGGCCGCCG 0.735676 -92 GGGCGGCGCTGCCATCGCGGGAGCCACGAC 8 216 0 GCCATCGCGG 0.950428 -52 CGATGGCAGCGCCGCCCGGGGTGGACCGGG 8 229 1 GCCGCCCGGG 0.555471 -39 CCGGGGTGGACCGGGTGCGCGCCCTCATGC 8 244 1 CCGGGTGCGC 0.953801 -24 TGACCGCTCGCTCGGGGCCCGGG 9 4 0 CTCGGGGCCC 0.90652 -99 CCCCGAGCGAGCGGTCACGCAATCCGGCAT 9 17 1 GCGGTCACGC 0.943089 -86 CTTAATGAAAGCCGCCGCCG 9 93 1 GCCGCCGCCG 0.992515 -10 GGCGGCGGCGCCGGTAACGGC 10 2 1 GCGGCGGCGC 0.970615 -208 ACCGGCGCGCGCCGTTACCGGCGCCGCCGC 10 12 0 GCCGTTACCG 0.60919 -198 GCCGAAACGAACCGGCGCGCGCCGTTACCG 10 22 0 ACCGGCGCGC 0.967031 -188 CAACCCGATCGTCAGCGCGCACATGTTGCG 10 66 0 GTCAGCGCGC 0.920634 -144 CTGCGACACCGTCGGCAGGGCTTTCGATCC 10 146 0 GTCGGCAGGG 0.829857 -64 TTGTGCTGAGCTGGTCGGAGGTGCGGG 10 193 1 CTGGTCGGAG 0.518835 -17 CTCCGGACTCACCGGGGCGGTTCACCCAGC 11 29 1 ACCGGGGCGG 0.913884 -272 CCGGTGACGACCCGGCTGGGTGAACCGCCC 11 43 0 CCCGGCTGGG 0.505343 -258 ATCGCCGACAGCCGGTGACGACCCGGCTGG 11 54 0 GCCGGTGACG 0.788136 -247 AAAACCGCATGTCGCCGGGCAAATGGGTGG 11 131 0 GTCGCCGGGC 0.955164 -170 GAGGTCGTAGCCGGGCTAGCCGCGCGCTTC 11 163 1 CCGGGCTAGC 0.48558 -138 GTGGGGTATGGTGGCTGAGGTGTTTGGGTG 11 255 1 GTGGCTGAGG 0.61907 -46 CTGTCATTTAGCCGTGGCCGATTTGGGGCT 12 59 1 GCCGTGGCCG 0.957558 -236 CAAATATTCGTCCGTCGCCGATGGTGCGCG 12 102 0 TCCGTCGCCG 0.871846 -193 GCGTTATTTCATCGCGGCGGAACGAGCCGC 12 162 1 ATCGCGGCGG 0.740123 -133 GTCGATAGCCCCGGTCGGGCTATGTTCCCC 12 220 1 CCGGTCGGGC 0.94869 -75 AGACCAGTTGACCGGTGCGGGACGCGGATA 12 259 1 ACCGGTGCGG 0.817822 -36 TCTCTGGCCAATGAGCGCGGGACAGTGTCG 14 14 1 ATGAGCGCGG 0.47683 -95 GTGTCGGCCTCTCAGCACGGTCTCTTTGCA 14 38 1 CTCAGCACGG 0.609253 -71 CGGATTCGGCCTCGTGGAGCAACGGCTGCA 14 64 0 CTCGTGGAGC 0.640461 -45 GCCGAATCCGCCCGCCAAGGCGTTAGCTTT 14 84 1 CCCGCCAAGG 0.860553 -25 CCCACCGACATTCGGCCCGGAAGCTGACTG 15 38 0 TTCGGCCCGG 0.539378 -29 TATCCCGGCCGCGAGCGCGCGTGTTTGTCC 16 25 0 GCGAGCGCGC 0.947916 -44 AGGGTCCACGCCCGTCGAGCGTCCGCGTTG 17 68 0 CCCGTCGAGC 0.946717 -176 CATCCCCCTGCTGACCGCGGACCCGCGTCT 17 155 1 CTGACCGCGG 0.850207 -89 AGCCCGGGCTCCCGGCGCAGACGCGGGTCC 17 173 0 CCCGGCGCAG 0.972169 -71 GGTGTGGCAGGTCAGCCCGGGCTCCCGGCG 17 186 0 GTCAGCCCGG 0.510989 -58 TCGTCTAGTTGCGGCCGGCGCTAAGGTGAG 17 220 1 GCGGCCGGCG 0.960897 -24 GAGGAGCTGGCCCACCACGCCCGGCATCGC 18 38 1 CCCACCACGC 0.776219 -49 GCCCGGCATCGCCGCGGCGCATCGATAGGA 18 56 1 GCCGCGGCGC 0.984533 -31 CCACCCGCTTGCGGGGGACGAAGCGATGAG 19 23 0 GCGGGGGACG 0.862847 -51 CCACTGCATCGTCGCGGCGCGCGCTC 19 58 1 GTCGCGGCGC 0.962643 -16 CTTCATTGTCGTCGGCGCGCC 20 2 0 GTCGGCGCGC 0.988158 -69 CGACAATGAAGTCGGCTCGGACAGCCTTCA 20 21 1 GTCGGCTCGG 0.747554 -50 CGCGGCGAAGCCGGGCACAGCGAGTCGACG 21 53 0 CCGGGCACAG 0.812387 -112 TGTGCCCGGCTTCGCCGCGCTTGCGATCGC 21 64 1 TTCGCCGCGC 0.887395 -101 GCCAAACAAACCCAGCGGGCGATCGCAAGC 21 82 0 CCCAGCGGGC 0.863318 -83 GCAGCGACTCGCCGCCAAACAAACCCAGCG 21 95 0 GCCGCCAAAC 0.540508 -70 GCGCGGCGAAGCCGCCGCAGCGACTCGCCG 21 111 0 GCCGCCGCAG 0.9783 -54 CTGCGGCGGCTTCGCCGCGCTTGCGATCGC 21 121 1 TTCGCCGCGC 0.887395 -44 CGCCGCGCTTGCGATCGCCGCTAGGCTGAC 21 133 1 GCGATCGCCG 0.857599 -32 GATTGACACGCGGTCAGCCTAGCGGCGAT 21 146 0 GCGGTCAGCC 0.65403 -19 GCCTAGATAGGTCGTGGGCGCAGTCGCGGC 22 111 1 GTCGTGGGCG 0.652855 -42 CGTGGGCGCAGTCGCGGCGGTCAGCGCGTA 22 123 1 GTCGCGGCGG 0.967695 -30 CGTCGTGTTGGCGAGCGCAGCGCTAGGCTC 23 25 0 GCGAGCGCAG 0.821421 -35 CGGCAATCGGGCGGGTACACCCTGGCACAA 24 20 0 GCGGGTACAC 0.428413 -165 CCCGATTGCCGCCGGCAACCGACACTGTTG 24 39 1 GCCGGCAACC 0.79908 -146 TCAAGACCCACCCGGGGCACTGCTGATTTG 24 79 0 CCCGGGGCAC 0.910812 -106 AGTCCCATGCCCGGGTACCGGACGGTCACC 24 131 0 CCGGGTACCG 0.633325 -54 GAAGGACCTGGCCGGCACGGCCGATGATCG 25 47 1 GCCGGCACGG 0.974561 -20 AGACCGGCTTCCCGTCGCGGGACGTTCGCG 26 56 0 CCCGTCGCGG 0.991436 -201 TGGATCAGACCCCGTCGCGGCGTCCGAGGA 26 85 1 CCCGTCGCGG 0.991436 -172 AGGAGGAGCACCCGCTGCACATGAAGCACT 26 111 1 CCCGCTGCAC 0.790403 -146 GCACATTCCCGTGGTGGACGCAGAGTCAGC 26 178 1 GTGGTGGACG 0.479271 -79 TGGACGCAGAGTCAGCGCAGGCCGGCGCGC 26 192 1 GTCAGCGCAG 0.678534 -65 GTCAGCGCAGGCCGGCGCGCCCCCTATTCT 26 202 1 GCCGGCGCGC 0.984206 -55 ********** Masking position 4 Map Score: 151.751 Number of sites scoring better than the average of aligned sites = 149113 Number in coding regions = 139731 Number in noncoding regions = 9382 Number of orfs with sites within 600 bp upstream = 1832 Fraction of orfs with sites within 600 bp upstream = 0.29425 Motif number 2 CACCCGGTGACCGGTGCGAAGT 1 3 1 CCCGGTGACC 0.822087 -298 TCGGTTGAGCCGCCGGTTGCCCACTGGTCG 1 42 0 CGCCGGTTGC 0.538018 -259 GCCAGCCTTTCCCGACTAGCTTGTGGTTGG 1 101 0 CCCGACTAGC 0.896423 -200 GATCCCGCCACCCCACCTCGACCGCGGTGC 1 165 1 CCCCACCTCG 0.745743 -136 CCACCTCGACCGCGGTGCCCACACCAACGA 1 177 1 CGCGGTGCCC 0.897644 -124 CAACGACTACCACCACCCCGAACGCCTCTT 1 201 1 CACCACCCCG 0.351848 -100 GTGGTCAGGGCGCGGCCCGCTAGTGGTCGA 1 230 0 CGCGGCCCGC 0.974576 -71 CCCACAAGTGCGCCACGTTGGTAGCCTCTG 1 278 1 CGCCACGTTG 0.557162 -23 CCCGGCTTGGCCGGAACTAG 2 1 1 CCCGGCTTGG 0.973388 -79 TGGCGGTTCACACCGCGTGCGCGTTTGGAG 2 49 1 CACCGCGTGC 0.919537 -31 ATGTGATCGGCGCCACCCGCGAGGGCGGCC 4 60 0 CGCCACCCGC 0.911169 -241 AGTAGCGCATCGCGGCTACCCACTGACCAC 4 233 1 CGCGGCTACC 0.955281 -68 CTGTTCCAGGCGCGACCAGCTTGTTGGACC 5 31 1 CGCGACCAGC 0.837758 -207 TCCCACCGCTAGCCACGAGATCG 5 225 0 CACCGCTAGC 0.857021 -13 GGAATGGCAGACGCGCTAGCTTGAG 6 6 0 ACGCGCTAGC 0.573932 -295 TCTGCCATTCCGCCACTCGGACCAACCAAC 6 25 1 CGCCACTCGG 0.923862 -276 AACCAACCACCGGGGCTGGCAGCTAAGGCT 6 48 1 CGGGGCTGGC 0.744889 -253 TATCGGATTGCCCCGCACCGGCCCAACCTA 6 77 1 CCCCGCACCG 0.725084 -224 CTCCTCCTCACCCCGTTACCCGGGGCGCAT 6 118 0 CCCCGTTACC 0.788363 -183 GATTTGATTGCCCGGCTCCTCCTCACCCCG 6 133 0 CCCGGCTCCT 0.778597 -168 CTCCTCCTCACCCCGTTACCCGGGGCGCAT 6 176 0 CCCCGTTACC 0.788363 -125 ACGACGCGGGCCCGGCGCGCCAGGGGCGAT 6 244 1 CCCGGCGCGC 0.985978 -57 CCTACCGACAGGGCGCGCACAC 7 5 0 CAGGGCGCGC 0.859149 -18 GGATCTGCGCCCGGGTTTGGCGGCCGACGT 8 16 0 CCGGGTTTGG 0.734487 -252 CGATATCCATCGCGGCGCGCAGGATCTGCG 8 37 0 CGCGGCGCGC 0.987742 -231 TGCCCAGCCGCCCGGCAAGCTCGCCGATGG 8 94 0 CCCGGCAAGC 0.782232 -174 CCGGAACAGGCCCGACTTGCTCATGCCCAG 8 117 0 CCCGACTTGC 0.924868 -151 GGGCCTGTTCCGGCATTTCGGCGCCAAGGA 8 134 1 CGGCATTTCG 0.285117 -134 CCGTCGAGGCCGCCGTGAGCGTGTTCGAAG 8 181 1 CGCCGTGAGC 0.90215 -87 CCATCGCGGGAGCCACGACCTCGGCTTCGA 8 205 0 AGCCACGACC 0.346199 -63 GCGATGGCAGCGCCGCCCGGGGTGGACCGG 8 228 1 CGCCGCCCGG 0.611623 -40 CCGGGGTGGACCGGGTGCGCGCCCTCATGC 8 244 1 CCGGGTGCGC 0.867274 -24 ACCGCTCGCTCGGGGCCCGGG 9 2 0 CGGGGCCCGG 0.51012 -101 CCGGCATTGACAGCACGCCCCAGGCGGACC 9 40 1 CAGCACGCCC 0.466538 -63 GCGCGCCGTTACCGGCGCCGCCGCC 10 6 0 ACCGGCGCCG 0.637274 -204 GCGCCGGTAACGGCGCGCGCCGGTTCGTTT 10 18 1 CGGCGCGCGC 0.936129 -192 ACACCGTCGGCAGGGCTTTCGATCCTATAA 10 141 0 CAGGGCTTTC 0.262383 -69 CCCGCACCTCCGACCAGCTCA 10 199 0 CCGCACCTCC 0.66151 -11 GGTGAACCGCCCCGGTGAGTCCGGAGACTC 11 25 0 CCCGGTGAGT 0.431711 -276 CCGGTGACGACCCGGCTGGGTGAACCGCCC 11 43 0 CCCGGCTGGG 0.801911 -258 CCCAGTTGTGCCCCACTTGGCCCCACTTGC 11 102 1 CCCCACTTGG 0.901982 -199 CCCCACTTGGCCCCACTTGCCACCCATTTG 11 112 1 CCCCACTTGC 0.930084 -189 CCTCAGAAAACCGCATGTCGCCGGGCAAAT 11 137 0 CCGCATGTCG 0.338649 -164 CACTGAAGCGCGCGGCTAGCCCGGCTACGA 11 167 0 CGCGGCTAGC 0.974569 -134 GACGGCAAAACGCCGCTTTGATACCCCAGT 11 204 1 CGCCGCTTTG 0.801602 -97 CCCCACAATCCCCCACTTTGCCCCATAACT 11 231 0 CCCCACTTTG 0.477125 -70 CGGCTCGTTCCGCCGCGATGAAATAACGCC 12 161 0 CGCCGCGATG 0.790558 -134 ATAGCCCGACCGGGGCTATCGACCAATCAC 12 213 0 CGGGGCTATC 0.633422 -82 GGCTATGTTCCCCGGTGTGGCTAGACCAGT 12 237 1 CCCGGTGTGG 0.88881 -58 TTGACCGGTGCGGGACGCGGATACGGCTAG 12 266 1 CGGGACGCGG 0.57679 -29 CTGCGCCACTCCTCAATCACCAG 13 12 0 CGCCACTCCT 0.47667 -13 GGCGGCGTGTCGCTGGACAAAC 16 3 1 CGGCGTGTCG 0.675744 -66 CGGACGCTCGACGGGCGTGGACCCTGCGGC 17 73 1 ACGGGCGTGG 0.613355 -171 GACGCGGGTCCGCGGTCAGCAGGGGGATGT 17 154 0 CGCGGTCAGC 0.786755 -90 GACCGCGGACCCGCGTCTGCGCCGGGAGCC 17 167 1 CCGCGTCTGC 0.714655 -77 GCAGGTCAGCCCGGGCTCCCGGCGCAGACG 17 180 0 CCGGGCTCCC 0.945721 -64 CGCGGCGATGCCGGGCGTGGTGGGCCAGCT 18 42 0 CCGGGCGTGG 0.873274 -45 ATCGATGCGCCGCGGCGATGCCGGGCGTGG 18 52 0 CGCGGCGATG 0.77833 -35 GCGCCGCTTCTCCTCATCGCT 19 2 1 CGCCGCTTCT 0.750612 -72 TGGGGGTACCACCCGCTTGCGGGGGACGAA 19 31 0 ACCCGCTTGC 0.808167 -43 ACTGCATCGTCGCGGCGCGCGCTC 19 60 1 CGCGGCGCGC 0.987742 -14 ACTCGCTGTGCCCGGCTTCGCCGCGCTTGC 21 58 1 CCCGGCTTCG 0.953279 -107 CCCGGCTTCGCCGCGCTTGCGATCGCCCGC 21 68 1 CCGCGCTTGC 0.962998 -97 AAGCCGCCGCAGCGACTCGCCGCCAAACAA 21 103 0 AGCGACTCGC 0.548422 -62 GGCGGCTTCGCCGCGCTTGCGATCGCCGCT 21 125 1 CCGCGCTTGC 0.962998 -40 CGCTTGCGATCGCCGCTAGGCTGACCGCGT 21 138 1 CGCCGCTAGG 0.96622 -27 CGCCGCCACCTTCGGGAAAT 22 1 1 CGCCGCCACC 0.930439 -152 ACGCGCTGACCGCCGCGACTGCGCCCACGA 22 122 0 CGCCGCGACT 0.738669 -31 TTGGCGAGCGCAGCGCTAGGCTCGGGCAAT 23 18 0 CAGCGCTAGG 0.653429 -42 CGGCGCCGCTTGTGCCAGGGTGT 24 4 1 CGCCGCTTGT 0.843736 -181 GCACGTCAAGACCCACCCGGGGCACTGCTG 24 84 0 ACCCACCCGG 0.322415 -101 CGTCCGGTACCCGGGCATGGGACTGGAACG 24 137 1 CCGGGCATGG 0.616193 -48 GCGGGACGTTCGCGATGCGCCGGTCTGAGG 26 40 0 CGCGATGCGC 0.785953 -217 TCTGATCCAGACCGGCTTCCCGTCGCGGGA 26 64 0 ACCGGCTTCC 0.684847 -193 CAGACCCCGTCGCGGCGTCCGAGGAGGAGC 26 90 1 CGCGGCGTCC 0.976022 -167 ACTCTGCGTCCACCGTGTGGGCTACTCGCA 26 151 1 CACCGTGTGG 0.567418 -106 CAGCGCAGGCCGGCGCGCCCCCTATTCTGG 26 204 1 CGGCGCGCCC 0.919733 -53 ********** Masking position 1 Map Score: 101.594 Number of sites scoring better than the average of aligned sites = 70536 Number in coding regions = 65163 Number in noncoding regions = 5373 Number of orfs with sites within 600 bp upstream = 1570 Fraction of orfs with sites within 600 bp upstream = 0.252168 Motif number 3 GGCAACCGGCGGCTCAACCGATATCGACAA 1 51 1 GGCTCAACCG 0.358327 -250 GTGTGGGCACCGCGGTCGAGGTGGGGTGGC 1 171 0 CGCGGTCGAG 0.662759 -130 GTGGTCAGGGCGCGGCCCGCTAGTGGTCGA 1 230 0 CGCGGCCCGC 0.840917 -71 GCCCCACAAGTGCGCCACGTTGGTAGCCTC 1 276 1 TGCGCCACGT 0.29011 -25 GAACCGCCACCGCTGCCCCGGCAGTGGCTA 2 28 0 CGCTGCCCCG 0.478752 -52 GACCTCCAAACGCGCACGCGGTGTGAACCG 2 52 0 CGCGCACGCG 0.864026 -28 GGCGCTAGCTTAGTTGGCCG 3 81 0 GGCGCTAGCT 0.742487 -10 CACCCGCGAGGGCGGCCGCATAGTTGGCTT 4 47 0 GGCGGCCGCA 0.546903 -254 CAATGTGATCGGCGCCACCCGCGAGGGCGG 4 62 0 GGCGCCACCC 0.868094 -239 TCCTGCCGGGGGCACAAGGGTTGATCTAGC 4 109 0 GGCACAAGGG 0.470737 -192 CTGCTCCGGAGGCAGACGCTCTATCCCCTG 4 156 1 GGCAGACGCT 0.610919 -145 GAGCTACGGGGGCGCACGACGACACGTTGC 4 185 1 GGCGCACGAC 0.71806 -116 GGGGCCCCATGGCGCAACGTGTCGTCGTGC 4 198 0 GGCGCAACGT 0.823069 -103 TGCTGTTCCAGGCGCGACCAGCTTGTTGGA 5 29 1 GGCGCGACCA 0.637909 -209 CGGCCAAAGCCGCCCACGCTGCACGCAGAA 5 142 1 CGCCCACGCT 0.315113 -96 CCACGCTGCACGCAGAACAGGCATCCGAGA 5 155 1 CGCAGAACAG 0.234804 -83 GAATGGCAGACGCGCTAGCTTGAG 6 5 0 CGCGCTAGCT 0.742474 -296 ATCGGATTGCCCCGCACCGGCCCAACCTAG 6 78 1 CCCGCACCGG 0.573558 -223 CGTTACCCGGGGCGCATCGTCGCCGAGCTA 6 105 0 GGCGCATCGT 0.771773 -196 CGTTACCCGGGGCGCATCGTCGCCGAGCTC 6 163 0 GGCGCATCGT 0.771773 -138 TCGGCGACGACGCGGGCCCGGCGCGCCAGG 6 238 1 CGCGGGCCCG 0.8674 -63 GCGGGCCCGGCGCGCCAGGGGCGATCGGCT 6 249 1 CGCGCCAGGG 0.854884 -52 GTGTGCGCGCCCTGTCGGTAGG 7 4 1 TGCGCGCCCT 0.635353 -19 GCCCGGGTTTGGCGGCCGACGTCGGCG 8 8 0 GGCGGCCGAC 0.606352 -260 CAAACCCGGGCGCAGATCCTGCGCGCCGCG 8 27 1 CGCAGATCCT 0.360971 -241 GAGCTTGCCGGGCGGCTGGGCATGAGCAAG 8 102 1 GGCGGCTGGG 0.733859 -166 ACACGCTCACGGCGGCCTCGACGGTCGCCA 8 175 0 GGCGGCCTCG 0.401921 -93 GCGCTGCCATCGCGGGAGCCACGACCTCGG 8 211 0 CGCGGGAGCC 0.492063 -57 TGCATGAGGGCGCGCACCCGGTCCACCCCG 8 245 0 CGCGCACCCG 0.981474 -23 GCACGCCCCAGGCGGACCATCGTTAAACAC 9 52 1 GGCGGACCAT 0.764359 -51 CGGCGGCGGCTTTCATTAAGC 9 92 0 GGCGGCGGCT 0.573709 -11 CGCCGTTACCGGCGCCGCCGCC 10 3 0 GGCGCCGCCG 0.85173 -207 CGCCGGTAACGGCGCGCGCCGGTTCGTTTC 10 19 1 GGCGCGCGCC 0.49591 -191 CAACAACTTTTGCGCAACATGTGCGCGCTG 10 54 1 TGCGCAACAT 0.140997 -156 CGATCGGGTTGGCGGAAGCTCTTTTAAGGA 10 85 1 GGCGGAAGCT 0.825456 -125 CCCGCACCTCCGACCAGCTCAG 10 198 0 CGCACCTCCG 0.64397 -12 GGGCTAGCCGCGCGCTTCAGTGGTACAGAG 11 175 1 CGCGCTTCAG 0.524182 -126 GGGGCACCTCCCTGCCAAATCC 11 289 0 GGCACCTCCC 0.372011 -12 CCCTGATTTTCGCGCACCATCGGCGACGGA 12 92 1 CGCGCACCAT 0.834616 -203 TTGGTCATAGGGCGGCTCGTTCCGCCGCGA 12 173 0 GGCGGCTCGT 0.685758 -122 GTATCCGCGTCCCGCACCGGTCAACTGGTC 12 260 0 CCCGCACCGG 0.573558 -35 GGCCAATGAGCGCGGGACAGTGTCGGCCTC 14 19 1 CGCGGGACAG 0.652666 -90 CTAACGCCTTGGCGGGCGGATTCGGCCTCG 14 80 0 GGCGGGCGGA 0.49398 -29 GACAAACACGCGCGCTCGCGGCCGGGATAA 16 26 1 CGCGCTCGCG 0.833572 -43 CGTCCGCGTTGGCGCTGGCTCCCAGAGTTG 17 49 0 GGCGCTGGCT 0.450432 -195 CCAGCGCCAACGCGGACGCTCGACGGGCGT 17 61 1 CGCGGACGCT 0.925975 -183 GCTCGACGGGCGTGGACCCTGCGGCACAAC 17 78 1 CGTGGACCCT 0.179411 -166 CCCTGCTGACCGCGGACCCGCGTCTGCGCC 17 160 1 CGCGGACCCG 0.971565 -84 AACTCGGTGTGGCAGGTCAGCCCGGGCTCC 17 191 0 GGCAGGTCAG 0.14429 -53 GCATCGCCGCGGCGCATCGATAGGAAGGAA 18 61 1 GGCGCATCGA 0.445938 -26 CGCTTCGTCCCCCGCAAGCGGGTGGTACCC 19 28 1 CCCGCAAGCG 0.440735 -46 GCATCGTCGCGGCGCGCGCTC 19 63 1 GGCGCGCGCT 0.884893 -11 GGCGCGCCGACGACAATGAA 20 1 1 GGCGCGCCGA 0.692367 -70 CACCCAGATCCGCGCCACAGGAGTACAACG 21 17 0 CGCGCCACAG 0.795197 -148 CCGGCTTCGCCGCGCTTGCGATCGCCCGCT 21 69 1 CGCGCTTGCG 0.79767 -96 GCGGCTTCGCCGCGCTTGCGATCGCCGCTA 21 126 1 CGCGCTTGCG 0.79767 -39 AGGTCGTGGGCGCAGTCGCGGCGGTCAGCG 22 119 1 CGCAGTCGCG 0.533137 -34 AGCCTAGCGCTGCGCTCGCCAACACGACGA 23 26 1 TGCGCTCGCC 0.308218 -34 GGTACACCCTGGCACAAGCGGCGCCG 24 7 0 GGCACAAGCG 0.65164 -178 ACCTCAGACCGGCGCATCGCGAACGTCCCG 26 39 1 GGCGCATCGC 0.694443 -218 GGCTTCCCGTCGCGGGACGTTCGCGATGCG 26 51 0 CGCGGGACGT 0.693284 -206 CGTCCGAGGAGGAGCACCCGCTGCACATGA 26 105 1 GGAGCACCCG 0.412196 -152 GCAGAGTCAGCGCAGGCCGGCGCGCCCCCT 26 197 1 CGCAGGCCGG 0.60639 -60 CGCAGGCCGGCGCGCCCCCTATTCTGGACC 26 207 1 CGCGCCCCCT 0.963206 -50 ********** Masking position 3 Map Score: 64.8925 Number of sites scoring better than the average of aligned sites = 52080 Number in coding regions = 48456 Number in noncoding regions = 3624 Number of orfs with sites within 600 bp upstream = 1330 Fraction of orfs with sites within 600 bp upstream = 0.21362 Motif number 4 TATCGACAAACTCACCTTCACCTGCACACCCA 1 72 1 CTCACCTCCC 0.971481 -229 CCTTCACCTGCACACCCAACCACAAGCTAGTC 1 86 1 CACACCAACA 0.834207 -215 CCGCGGTGCCCACACCAACGACTACCACCACC 1 186 1 CACACCACAC 0.713534 -115 TACGGGGGCGCACGACGACACGTTGCGCCATG 4 189 1 CACGACACCG 0.956302 -112 AGGTGGGGAACACACCCAAACCATCAGCAAAA 5 72 1 CACACCAACC 0.912219 -166 GAGATCGTTTCACACCTTCTCAAGGTTCAGCG 5 200 0 CACACCTCCA 0.949365 -38 ACCAGCTCAGCACAACTTCACGAATCCCAGAC 10 176 0 CACAACTCCG 0.969562 -34 CCAAATCCATCTCACCCAAACACCTCAGCCAC 11 265 0 CTCACCAACA 0.815706 -36 GACCCTGCGGCACAACTTCACGTTTTACGACG 17 92 1 CACAACTCCG 0.969562 -152 GGCCAGTCACCTCGACATCCCCCTGCTGACCG 17 140 1 CTCGACTCCC 0.896532 -104 GGCGCTCACCTTAGCGCCGGCCGCAA 17 228 0 CTCACCTACG 0.940185 -16 GGGCCAGCTCCTCGACAACACGAAGGTCGCAT 18 19 0 CTCGACACCG 0.950626 -68 ACCAAACAACTACGCGCTGACCGCCG 22 137 0 AACAACACCG 0.672011 -16 TAGCGCTGCGCTCGCCAACACGACGACACGAA 23 30 1 CTCGCCACCG 0.97861 -30 GAGGTTCCTTCTCACCATCCCGGAGCAACTAC 26 12 0 CTCACCTCCG 0.985203 -245 ****** ** ** Masking position 6 Map Score: 17.7175 Number of sites scoring better than the average of aligned sites = 2517 Number in coding regions = 2317 Number in noncoding regions = 200 Number of orfs with sites within 600 bp upstream = 176 Fraction of orfs with sites within 600 bp upstream = 0.0282686 Motif number 5 CAGTGGGCAACCGGCGGCTCAACCGATATCG 1 46 1 CCGCGGCTCA 0.760746 -255 GTGAACCGCCACCGCTGCCCCGGCAGTGGCT 2 29 0 ACGCTGCCCC 0.536093 -51 GGGTGGTTTTGTGTCTGTTCGGCGGCACAAG 3 15 0 GTTCTGTTCG 0.0963283 -76 GGGTGCTTTTGCGTCTGCTCGGCCAACTAAG 3 62 1 GCTCTGCTCG 0.896517 -29 GAACCTGCGGCCTTCTGCTCCGGAGGCAGAC 4 142 1 CCTCTGCTCC 0.945832 -159 TCCCTCGTTGGCTGCTGTTCCAGGCGCGACC 5 17 1 GCGCTGTTCC 0.934404 -221 ATTTGATTGCCCGGCTCCTCCTCACCCCGTT 6 131 0 CCGCTCCTCC 0.96533 -170 GGCTGATTGCCTGGCTCCTCCTCACCCCGTT 6 189 0 CTGCTCCTCC 0.848752 -112 GTCGCCAGCTGCAGCTGCTCCTTGGCGCCGA 8 151 0 GCGCTGCTCC 0.994285 -117 CGAAGCCGAGGTCGTGGCTCCCGCGATGGCA 8 206 1 GTGTGGCTCC 0.834451 -62 TCCCGCGATGGCAGCGCCGCCCGGGGTGGAC 8 224 1 GCGCGCCGCC 0.96781 -44 GGCGGCGGCGCCGGTAACGGCG 10 2 1 GCGCGGCGCC 0.990569 -208 GCGCCGGTTCGTTTCGGCTCCAACAACTTTT 10 34 1 GTTCGGCTCC 0.873303 -176 CCCGCACCTCCGACCAGCTCA 10 199 0 CCGCACCTCC 0.690939 -11 TCTCTTTGCAGCCGTTGCTCCACGAGGCCGA 14 58 1 GCGTTGCTCC 0.968274 -51 GTCCGCGTTGGCGCTGGCTCCCAGAGTTGAA 17 47 0 GCCTGGCTCC 0.620672 -197 CCGCGGACCCGCGTCTGCGCCGGGAGCCCGG 17 169 1 GCTCTGCGCC 0.958378 -75 GCGTGGTGGGCCAGCTCCTCGACAACACGAA 18 27 0 CCGCTCCTCG 0.852472 -60 GCGCCGCTTCTCCTCATCGCTTC 19 3 1 GCGCTTCTCC 0.947803 -71 CCACTGCATCGTCGCGGCGCGCGCTC 19 58 1 GTGCGGCGCG 0.815091 -16 CTCGCTGTGCCCGGCTTCGCCGCGCTTGCGA 21 59 1 CCGCTTCGCC 0.807315 -106 GCGAGTCGCTGCGGCGGCTTCGCCGCGCTTG 21 113 1 GCGCGGCTTC 0.86382 -52 GCTGACCGCCGCGACTGCGCCCACGACCTAT 22 117 0 GCACTGCGCC 0.850307 -36 GGTAGTTGCTCCGGGATGGTGA 26 2 1 GTGTTGCTCC 0.860173 -255 TTCATGTGCAGCGGGTGCTCCTCCTCGGACG 26 105 0 GCGGTGCTCC 0.932173 -152 ** ******** Masking position 10 Map Score: 36.1319 Number of sites scoring better than the average of aligned sites = 10752 Number in coding regions = 10057 Number in noncoding regions = 695 Number of orfs with sites within 600 bp upstream = 472 Fraction of orfs with sites within 600 bp upstream = 0.0758111 Motif number 6 GTGCGAAGTCCACCATATCGACCAGTGGGCAAC 1 24 1 CACTACGACC 0.778468 -277 GATCCCGCCACCCCACCTCGACCGCGGTGCCCA 1 165 1 CCCCCCGACC 0.821407 -136 TCCCAGAGGCTACCAACGTGGCGC 1 287 0 CCCAGCTACC 0.837473 -14 CCCGGCAGTGGCTAGTTCCGGCCAAGCCGGG 2 9 0 GCTTTCGGCC 0.670921 -71 CACAAAACCACCCTATTTCGACCAGAATCGGGT 3 33 1 CCCTTCGACC 0.984388 -58 ATCGCGGCTACCCACTGACCACCGCAACGGATT 4 241 1 CCCTGCCACC 0.978648 -60 GTGTTCCCCACCTGATTCCGGCCGGGTCCAACA 5 52 0 CCTTTCGGCC 0.79431 -186 ACAAGCAGGGCCCAATGCCGACCGATCGCGGCC 5 114 1 CCCTGCGACC 0.991638 -124 ACCGATCGCGGCCAAAGCCGCCCACGCTGCACG 5 134 1 GCCAGCGCCC 0.900694 -104 TATCGGATTGCCCCGCACCGGCCCAACCTAGCT 6 77 1 CCCCACGGCC 0.938783 -224 AGTCACCTTTCCTACCACTCGTAACC 6 285 0 CACTTCTACC 0.438182 -16 CGCCGACGTCGGCCGCCAAACCCG 8 2 1 GCCCGCGGCC 0.97245 -266 AGCAAGTCGGGCCTGTTCCGGCATTTCGGCGCC 8 126 1 GCCTTCGGCA 0.51106 -142 AGGAGCAGCTGCAGCTGGCGACCGTCGAGGCCG 8 160 1 GCATGCGACC 0.64076 -108 TGAGGGCGCGCACCCGGTCCACCCCGGGCGGCG 8 238 0 CACGGCCACC 0.385728 -30 TTGACAGCACGCCCCAGGCGGACCATCGTTAAA 9 46 1 GCCAGCGGAC 0.619102 -57 ATCGCCGACAGCCGGTGACGACCCGGCTGGGTG 11 51 0 GCCTGCGACC 0.984216 -250 CCCACTTGGCCCCACTTGCCACCCATTTGCCCG 11 113 1 CCCTTCCACC 0.960584 -188 GCGCGGCTAGCCCGGCTACGACCTCAGAAAACC 11 155 0 CCCCTCGACC 0.966843 -146 GCCACCATACCCCACAATCCCCCACTTTGCCCC 11 237 0 CCCAACCCCC 0.603568 -64 CTCACCCAAACACCTCAGCCACCATACCCCACA 11 254 0 CACCACCACC 0.385796 -47 CAGGGCCAAGCCCCAAATCGGCCACGGCTAAAT 12 64 0 CCCAACGGCC 0.937704 -231 GAACGAGCCGCCCTATGACCAACTGTGCAAGCG 12 181 1 CCCTGCCAAC 0.682489 -114 ATGAGCGCGGGACAGTGTCGGCCTCTCAGCACG 14 24 1 GACTGCGGCC 0.907835 -85 GCTCCACGAGGCCGAATCCGCCCGCCAAGGCGT 14 74 1 GCCATCGCCC 0.828251 -35 TGACCTCCCACCGACATTCGGCCCGGAAGCTGA 15 41 0 CCGATCGGCC 0.59565 -26 ACCTCGACATCCCCCTGCTGACCGCGGACCCGC 17 148 1 CCCTGTGACC 0.753254 -96 TTCGCCCGATGCGACCTTCGTGTTGT 18 4 1 GCCATCGACC 0.937726 -83 TCCCGTTTCCTTCCTATCGATGCG 18 73 0 CCCTTCTTCC 0.326536 -14 CAAACAACTACGCGCTGACCGCCGCGACTGCGC 22 128 0 CGCTGCCGCC 0.829323 -25 GGTGTACCCGCCCGATTGCCGCCGGCAACCGAC 24 29 1 CCCTTCCGCC 0.967446 -156 CGATCATCGGCCGTGCCGGCCAGGTCCTTCC 25 46 0 GGCTGCGGCC 0.823566 -21 *** ** ***** Masking position 9 Map Score: 43.5821 Number of sites scoring better than the average of aligned sites = 9388 Number in coding regions = 8795 Number in noncoding regions = 593 Number of orfs with sites within 600 bp upstream = 455 Fraction of orfs with sites within 600 bp upstream = 0.0730806 Motif number 7 CCCGCTAGTGGTCGAAGAGGCGTTCGGGGTG 1 214 0 GCGAAGAGGC 0.282247 -87 TACTTGTGCCGCCGAACAGACACAAAACCAC 3 13 1 GCGAACAGAC 0.300697 -78 GGAGCAGAAGGCCGCAGGTTCGAATCCTGCC 4 132 0 GCGCAGGTTC 0.970919 -169 TCCGGAGGCAGACGCTCTATCCCCTGAGCTA 4 160 1 GCGCTCTATC 0.333388 -141 CGGCTTTGGCCGCGATCGGTCGGCATTGGGC 5 123 0 CCGATCGGTC 0.661321 -115 CGTTACCCGGGGCGCATCGTCGCCGAGCTAG 6 104 0 GCGCATCGTC 0.653552 -197 CGTTACCCGGGGCGCATCGTCGCCGAGCTCG 6 162 0 GCGCATCGTC 0.653552 -139 TCGCCCCTGGCGCGCCGGGCCCGCGTCGTCG 6 242 0 CCGCCGGGCC 0.848096 -59 GTGTGCGCGCCCTGTCGGTAGG 7 6 1 CCGCCCTGTC 0.760191 -17 TCCATCGCGGCGCGCAGGATCTGCGCCCGGG 8 31 0 CCGCAGGATC 0.910378 -237 CATCGTTAAACACGAACGTTCGTGCTTAATG 9 69 1 CCGAACGTTC 0.768494 -34 GGTAACGGCGCGCGCCGGTTCGTTTCGGCTC 10 23 1 CCGCCGGTTC 0.884076 -187 AAAACAGGATGTCGCACTTTCCTTAAAAGAG 10 103 0 GCGCACTTTC 0.836304 -107 CCCTGATTTTCGCGCACCATCGGCGACGGAC 12 92 1 CCGCACCATC 0.798796 -203 GCTGGACAAACACGCGCGCTCGCGGCCGGGA 16 22 1 CCGCGCGCTC 0.8675 -47 CGTCCGCGTTGGCGCTGGCTCCCAGAGTTGA 17 48 0 GCGCTGGCTC 0.836842 -196 GTGAAGTTGTGCCGCAGGGTCCACGCCCGTC 17 82 0 GCGCAGGGTC 0.982925 -162 TCCCGGCGCAGACGCGGGTCCGCGGTCAGCA 17 163 0 GCGCGGGTCC 0.800389 -81 GCATCGTCGCGGCGCGCGCTC 19 63 1 GCGCGCGCTC 0.907059 -11 CGGCGAAGCCGCCGCAGCGACTCGCCGCCAA 21 107 0 GCGCAGCGAC 0.58083 -58 ACCGGCGCATCGCGAACGTCCCGCGACGGGA 26 46 1 CCGAACGTCC 0.472221 -211 ATCAGACCCCGTCGCGGCGTCCGAGGAGGAG 26 88 1 GCGCGGCGTC 0.594252 -169 CCACACGGTGGACGCAGAGTCAACGTGTAAA 26 140 0 GCGCAGAGTC 0.906718 -117 GTGTGGGCTACTCGCACATTCCCGTGGTGGA 26 165 1 CCGCACATTC 0.846108 -92 TCCCGTGGTGGACGCAGAGTCAGCGCAGGCC 26 184 1 GCGCAGAGTC 0.906718 -73 * ********* Masking position 4 Map Score: 21.305 Number of sites scoring better than the average of aligned sites = 7116 Number in coding regions = 6479 Number in noncoding regions = 637 Number of orfs with sites within 600 bp upstream = 476 Fraction of orfs with sites within 600 bp upstream = 0.0764536 Motif number 8 CAAGGAAACGGTCCGACGGCCAAACGGAATG 1 134 1 GTCCGAGGCC 0.674736 -167 ACTACCACCACCCCGAACGCCTCTTCGACCA 1 206 1 CCCCGACGCC 0.984716 -95 CTGCCTCCGGAGCAGAAGGCCGCAGGTTCGA 4 140 0 AGCAGAGGCC 0.852187 -161 GTGCGGGGCAATCCGATAGCCTTAGCTGCCA 6 64 0 ATCCGAAGCC 0.890967 -237 ACGACGCGGGCCCGGCGCGCCAGGGGCGATC 6 244 1 CCCGGCCGCC 0.888764 -57 AACCCTGGCGAGCCGATCGCCCCTGGCGCGC 6 258 0 AGCCGACGCC 0.9725 -43 CGATGGACAGCCCCGAGAGCCCCTTCACCGA 8 69 0 CCCCGAAGCC 0.98082 -199 CCGGCAAGCTCGCCGATGGACAGCCCCGAGA 8 82 0 CGCCGAGGAC 0.841184 -186 CTCACGGCGGCCTCGACGGTCGCCAGCTGCA 8 169 0 CCTCGAGGTC 0.621834 -99 GCTTCCGCCAACCCGATCGTCAGCGCGCACA 10 73 0 ACCCGACGTC 0.89678 -137 GGTCTCAGATCAGAGAGTCTCCGGACTCA 11 9 1 ATCAGAAGTC 0.281465 -292 GGTGAACCGCCCCGGTGAGTCCGGAGACTCT 11 24 0 CCCGGTAGTC 0.485503 -277 GACTCAATATCGCCGACAGCCGGTGACGACC 11 61 0 CGCCGAAGCC 0.982871 -240 CACTGAAGCGCGCGGCTAGCCCGGCTACGAC 11 166 0 CGCGGCAGCC 0.896505 -135 ATTCGTCCGTCGCCGATGGTGCGCGAAAATC 12 96 0 CGCCGAGGTG 0.633039 -199 ACGAGGCCGAATCCGCCCGCCAAGGCGTTAG 14 79 1 ATCCGCCGCC 0.745218 -30 GGTCCACGCCCGTCGAGCGTCCGCGTTGGCG 17 65 0 CGTCGACGTC 0.663566 -179 CCCGCGTCTGCGCCGGGAGCCCGGGCTGACC 17 176 1 CGCCGGAGCC 0.881031 -68 CTCCTCGACAACACGAAGGTCGCATCGGGCG 18 13 0 ACACGAGGTC 0.272718 -74 ATGAAGTCGGCTCGGACAGCCTTCAAGCCGG 20 26 1 CTCGGAAGCC 0.898498 -45 GATTGACACGCGGTCAGCCTAGCGGCGAT 21 146 0 CGCGGTAGCC 0.777384 -19 AACAACTACGCGCTGACCGCCGCGACTGCGC 22 128 0 CGCTGACGCC 0.81952 -25 ATGCCCGGGTACCGGACGGTCACCAAGACTG 24 124 0 ACCGGAGGTC 0.811925 -61 AGCAGACGGCCTCACAGGTTT 24 174 0 AGCAGAGGCC 0.852017 -11 ****** **** Masking position 5 Map Score: 25.323 Number of sites scoring better than the average of aligned sites = 10082 Number in coding regions = 9345 Number in noncoding regions = 737 Number of orfs with sites within 600 bp upstream = 559 Fraction of orfs with sites within 600 bp upstream = 0.0897848 Motif number 9 TTGTGGTCAGGGCGCGGCCCGCTAGTGGTC 1 232 0 GGCGCGGCCC 0.791505 -69 AAAACGTCAAGACCAGGCCCCACAAGTGCG 1 260 1 GACCAGGCCC 0.978139 -41 GGCTAGTTCCGGCCAAGCCGGG 2 3 0 GGCCAAGCCG 0.657125 -77 CCCCGGCAGTGGCTAGTTCCGGCCAAGCCG 2 13 0 GGCTAGTTCC 0.490801 -67 CGGCCAACTAAGCTAGCGCC 3 81 1 AGCTAGCGCC 0.4162 -10 GCGCTACTCTGGCGGGGCCCCATGGCGCAA 4 211 0 GGCGGGGCCC 0.930616 -90 ACCTGATTCCGGCCGGGTCCAACAAGCTGG 5 46 0 GGCCGGGTCC 0.785598 -192 GACCGATCGCGGCCAAAGCCGCCCACGCTG 5 133 1 GGCCAAAGCC 0.444329 -105 TAGCCTTAGCTGCCAGCCCCGGTGGTTGGT 6 49 0 TGCCAGCCCC 0.908796 -252 GCCCCTGGCGCGCCGGGCCCGCGTCGTCGC 6 241 0 CGCCGGGCCC 0.864496 -60 GCTCGCCGATGGACAGCCCCGAGAGCCCCT 8 76 0 GGACAGCCCC 0.968162 -192 CGAAATGCCGGAACAGGCCCGACTTGCTCA 8 124 0 GAACAGGCCC 0.866762 -144 CCGCACCTCCGACCAGCTCAGCACAACTTC 10 189 0 GACCAGCTCA 0.292653 -21 CCGGCTGGGTGAACCGCCCCGGTGAGTCCG 11 32 0 GAACCGCCCC 0.602834 -269 CGAAAATCAGGGCCAAGCCCCAAATCGGCC 12 74 0 GGCCAAGCCC 0.969963 -221 CAACTCTGGGAGCCAGCGCCAACGCGGACG 17 49 1 AGCCAGCGCC 0.89592 -195 GTGCCGCAGGGTCCACGCCCGTCGAGCGTC 17 75 0 GTCCACGCCC 0.47114 -169 CGAGGTGACTGGCCAGTGCCACGTAGAGGG 17 124 0 GGCCAGTGCC 0.923504 -120 GGGCGTGGTGGGCCAGCTCCTCGACAACAC 18 30 0 GGCCAGCTCC 0.976731 -57 CGGCCGTGCCGGCCAGGTCCTTCCCGATAC 25 40 0 GGCCAGGTCC 0.945578 -27 AGCGCAGGCCGGCGCGCCCCCTATTCTGGA 26 205 1 GGCGCGCCCC 0.888251 -52 GGAAGATTGGAGACAGGTCCAGAATAGGGG 26 222 0 AGACAGGTCC 0.61295 -35 ********** Masking position 9 Map Score: 23.2457 Number of sites scoring better than the average of aligned sites = 8817 Number in coding regions = 8258 Number in noncoding regions = 559 Number of orfs with sites within 600 bp upstream = 418 Fraction of orfs with sites within 600 bp upstream = 0.0671378 Motif number 10 CACACCCAACCACAAGCTAGTCGGGAAAGGCTGG 1 96 1 CCAGTGTCGG 0.699121 -205 CCCGGCTTGGCCGGAACTAGCCAC 2 1 1 CCGCTGCCGG 0.636885 -79 TGGTCTCGCTCTCAAATTCGTCGGGGTAAGAACC 4 11 0 CCAATGTCGG 0.231575 -290 GCCGCAGGTTCGAATCCTGCCGGGGGCACAAGGG 4 119 0 CAACTCCGGG 0.629152 -182 GGATTCGAAGCCCAACCACCTCAGCCCATAGGAT 4 269 1 CCACACTCAG 0.751224 -32 GGGCCCAATGCCGACCGATCGCGGCCAAAGCCGC 5 121 1 CGACACGCGG 0.614428 -117 GCGGTCCGGTCACAGGCATCTCGGATGCCTGTTC 5 169 0 CCAGACTCGG 0.943337 -69 CCGCACCGGCCCAACCTAGCTCGGCGACGATGCG 6 89 1 CAACACTCGG 0.862612 -212 GCCGGGCAATCAAATCGAGCTCGGCGACGATGCG 6 147 1 CAACACTCGG 0.964418 -154 CCCACGTAAGCAAATCCAGCTCGGCGACGACGCG 6 218 1 CAACACTCGG 0.964435 -83 GCCGACGTCGGCCGCCAAACCCGGGCGCAGATCC 8 12 1 GCGCACCCGG 0.842813 -256 TGCCCAGCCGCCCGGCAAGCTCGCCGATGGACAG 8 90 0 CCGCACTCGC 0.688075 -178 GGGCGCGCACCCGGTCCACCCCGGGCGGCGCTGC 8 234 0 CGGCACCCGG 0.92223 -34 CGAACCGGCGCGCGCCGTTACCGGCGCCGCCGCC 10 11 0 CCGCTACCGG 0.710205 -199 CACTGAAGCGCGCGGCTAGCCCGGCTACGACCTC 11 163 0 CCGCACCCGG 0.983851 -138 GGCCAAGCCCCAAATCGGCCACGGCTAAATGACA 12 60 0 CAACGCACGG 0.304208 -235 GGCTCCCAAGGTTACCTGGCGCTTTATCC 16 50 0 CAAGTCCTGG 0.388418 -19 CCCGCGTCTGCGCCGGGAGCCCGGGCTGACCTGC 17 176 1 CCCGACCCGG 0.89707 -68 CCGGCCGCAACTAGACGAACTCGGTGTGGCAGGT 17 204 0 CAGCACTCGG 0.963732 -40 GAGGAGCTGGCCCACCACGCCCGGCATCGCCGCG 18 38 1 CCACCCCCGG 0.912716 -49 CGATCGCAAGCGCGGCGAAGCCGGGCACAGCGAG 21 59 0 CCGCAGCCGG 0.966857 -106 CGACTCGCCGCCAAACAAACCCAGCGGGCGATCG 21 87 0 CAACACCCAG 0.780976 -78 ATTTGCACGTCAAGACCCACCCGGGGCACTGCTG 24 84 0 CAGCCCCCGG 0.933007 -101 CAGACGGCCTCACAGGTTTCTTGGTTCGTTCCAG 24 159 0 CCAGTCTTGG 0.355452 -26 GAACGTCCCGCGACGGGAAGCCGGTCTGGATCAG 26 59 1 CACGAGCCGG 0.541096 -198 GGACCTGTCTCCAATCTTCCCCGGAAAGGGAAAC 26 232 1 CAACTCCCGG 0.964352 -25 * ** * * ***** Masking position 1 Map Score: 29.2407 Number of sites scoring better than the average of aligned sites = 8574 Number in coding regions = 7956 Number in noncoding regions = 618 Number of orfs with sites within 600 bp upstream = 440 Fraction of orfs with sites within 600 bp upstream = 0.0706714 Motif number 11 GCCGATCACATTGTTGTAGCCATGCGTGAGGCTAG 4 79 1 TTGTGAGCCC 0.978215 -222 GGCACAAGGGTTGATCTAGCCTCACGCATGGCTAC 4 94 0 TTGTCAGCCC 0.989777 -207 CGCGACCAGCTTGTTGGACCCGGCCGGAATCAGGT 5 41 1 TTGTGACCCC 0.778651 -197 AAAAAAAGCCCTGCACAAGCAGGGCCCAATGCCGA 5 100 1 CTGACAGCAC 0.723092 -138 CAGGCCCGACTTGCTCATGCCCAGCCGCCCGGCAA 8 106 0 TTGTCTGCCC 0.892287 -162 TGCGCAAAAGTTGTTGGAGCCGAAACGAACCGGCG 10 35 0 TTGTGAGCCA 0.717571 -175 TATCGTTTTTTTCGTCTAGCGATTCCTCGGCGTTA 12 133 1 TTCTCAGCGC 0.807934 -162 TTCATCGCGGCGGAACGAGCCGCCCTATGACCAAC 12 169 1 CGGACAGCCC 0.908252 -126 CACCGGTCAACTGGTCTAGCCACACCGGGGAACAT 12 241 0 CTGTCAGCCC 0.989566 -54 AGCGCGCGTGTTTGTCCAGCGACACGCCGCC 16 7 0 TTTTCAGCGC 0.606641 -62 AATCTGTTGCCTGAAGAAGCCGATCTAC 17 4 0 CTGAGAGCCC 0.948422 -240 GGCTTGAAGGCTGTCCGAGCCGACTTCATTGTCGT 20 20 0 CTGCCAGCCT 0.650319 -51 AATATCAGGATTCGTGCAGCCAAACCGATCGATTT 22 27 0 TTCTGAGCCC 0.881733 -126 CGAGGTCATTGCCCGAGCCTAGCGCTGCGCTCG 23 9 1 TTGCCAGCCC 0.971059 -51 GGGTACACCCTGGCACAAGCGGCGCCG 24 3 0 TGGACAGCGC 0.72562 -182 GCGACGGGGTCTGATCCAGACCGGCTTCCCGTCGC 26 68 0 CTGTCAGACC 0.83369 -189 *** ** **** * Masking position 8 Map Score: 11.0752 Number of sites scoring better than the average of aligned sites = 1677 Number in coding regions = 1558 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 124 Fraction of orfs with sites within 600 bp upstream = 0.0199165 Motif number 12 TCGATATGGTGGACTTCGCACCGGTCACCGGGT 1 12 0 GGACTCACCG 0.939358 -289 GGCCGCGCCCTGACCACAAAACGTCAAGACCAG 1 243 1 TGACCCAACG 0.975742 -58 CGCTCAGGGACCTCCAAACGCGCACGCGGT 2 60 0 GGACCCAACG 0.991918 -20 GCCTGTGACCGGACCGCTGAACCTTGAGAAGGT 5 186 1 GGACCCAACC 0.990005 -52 TCCGCCACTCGGACCAACCAACCACCGGGGCTG 6 33 1 GGACCAAACC 0.951245 -268 AGGTGACCTCCCACCGACATTCGGCC 15 51 0 TGACCCACCG 0.981055 -16 ATCCCCCTGCTGACCGCGGACCCGCGTCTGCGC 17 156 1 TGACCCACCC 0.97664 -88 GGACTGGAACGAACCAAGAAACCTGTGAGGCCG 24 156 1 GAACCAAACC 0.793471 -29 TGGTGAGAAGGAACCTCAGACCGGCGCATCGCG 26 27 1 GAACCCACCG 0.968861 -230 ***** * **** Masking position 10 Map Score: 9.78632 Number of sites scoring better than the average of aligned sites = 360 Number in coding regions = 328 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 13 CCGGCGGCTCAACCGATATCGACAAACTCAC 1 56 1 AACGATATCG 0.675696 -245 AGGGACCTCCAAACGCGCACGCGGTGTGAAC 2 54 0 AACGCGCACG 0.872429 -26 AGAAGGTGTGAAACGATCTCGTGGCTAGCGG 5 212 1 AACGATCTCG 0.959755 -26 CTCAAGCTAGCGCGTCTGCCATTC 6 4 1 AACTAGCGCG 0.781189 -297 GCACCGGCCCAACCTAGCTCGGCGACGATGC 6 91 1 AACTAGCTCG 0.949895 -210 CGGGCAATCAAATCGAGCTCGGCGACGATGC 6 149 1 AACGAGCTCG 0.98972 -152 CACGTAAGCAAATCCAGCTCGGCGACGACGC 6 220 1 AACCAGCTCG 0.977124 -81 GCGTGTTCGAAGCCGAGGTCGTGGCTCCCGC 8 199 1 AGCGAGGTCG 0.934936 -69 CTCCCTGCCAAATCCATCTCACCCAAACACC 11 273 0 AACCATCTCA 0.431554 -28 ATTGGTCGATAGCCCCGGTCGGGCTATGTTC 12 216 1 AGCCCGGTCG 0.780887 -79 CTGGACAAACACGCGCGCTCGCGGCCGGGAT 16 23 1 ACCGCGCTCG 0.926337 -46 GGCCGCAACTAGACGAACTCGGTGTGGCAGG 17 205 0 AGCGAACTCG 0.855312 -39 ** ******** Masking position 1 Map Score: 5.38292 Number of sites scoring better than the average of aligned sites = 931 Number in coding regions = 840 Number in noncoding regions = 91 Number of orfs with sites within 600 bp upstream = 77 Fraction of orfs with sites within 600 bp upstream = 0.0123675 Motif number 14 TCCTCCTCACCCCGTTACCCGGGGCGCATC 6 117 0 CCCGTTACCC 0.97713 -184 TCCTCCTCACCCCGTTACCCGGGGCGCATC 6 175 0 CCCGTTACCC 0.97713 -126 TTTCCTACCACTCGTAACCCTGGCGAGCCG 6 274 0 CTCGTAACCC 0.759661 -27 AGTCACCTTTCCTACCACTCGTA 6 288 0 CACCTTTCCT 0.622505 -13 AGCACAACTTCACGAATCCCAGACCTGCGA 10 170 0 CACGAATCCC 0.920386 -40 CACAATCCCCCACTTTGCCCCATAACTGGG 11 228 0 CACTTTGCCC 0.644529 -73 ACACCTCAGCCACCATACCCCACAATCCCC 11 248 0 CACCATACCC 0.848386 -53 AATCCCTTATCCCCAAAAATCGT 12 4 1 CCCTTATCCC 0.822803 -291 TCCCGTTTCCTTCCTATCGAT 18 76 0 CCCGTTTCCT 0.905308 -11 GGTTTGGCTGCACGAATCCTGATATTGCTG 22 36 1 CACGAATCCT 0.749808 -117 AACACGACGACACGAAACCTTTGG 23 46 1 CACGAAACCT 0.77638 -14 GGTGTACCCGCCCGATTGCCGCCGGCAACC 24 29 1 CCCGATTGCC 0.716433 -156 CCAGGTCCTTCCCGATACACGCAGCTGGAA 25 28 0 CCCGATACAC 0.790267 -39 GCACATGAAGCACTTTACACGTTGACTCTG 26 127 1 CACTTTACAC 0.442234 -130 ********** Masking position 3 Map Score: 6.36236 Number of sites scoring better than the average of aligned sites = 1637 Number in coding regions = 1485 Number in noncoding regions = 152 Number of orfs with sites within 600 bp upstream = 133 Fraction of orfs with sites within 600 bp upstream = 0.021362 Motif number 15 GGTGAGTTTGTCGATATCGGTTGAGCCGCC 1 58 0 TCGATATCGG 0.64849 -243 CCACCCCACCTCGACCGCGGTGCCCACACC 1 172 1 TCGACCGCGG 0.955746 -129 TCGAAGCCCAACCACCTCAGCCCATAGGAT 4 273 1 ACCACCTCAG 0.859738 -28 CCAATGCCGACCGATCGCGGCCAAAGCCGC 5 125 1 CCGATCGCGG 0.848398 -113 AAGGTGTGAAACGATCTCGTGGCTAGCGGT 5 214 1 ACGATCTCGT 0.427635 -24 ACCGGCCCAACCTAGCTCGGCGACGATGCG 6 93 1 CCTAGCTCGG 0.572877 -208 GGCAATCAAATCGAGCTCGGCGACGATGCG 6 151 1 TCGAGCTCGG 0.808338 -150 CGTAAGCAAATCCAGCTCGGCGACGACGCG 6 222 1 TCCAGCTCGG 0.963718 -79 CGCCGACGTCGGCCGCCAAACC 8 3 1 CCGACGTCGG 0.473729 -265 CGAGGCGATATCCATCGCGGCGCGCAGGAT 8 42 0 TCCATCGCGG 0.896277 -226 CGCGGGAGCCACGACCTCGGCTTCGAACAC 8 201 0 ACGACCTCGG 0.915452 -67 GCGCACCCGGTCCACCCCGGGCGGCGCTGC 8 234 0 TCCACCCCGG 0.937219 -34 CGCACCTCCGACCAGCTCAGCACAACTTCA 10 188 0 ACCAGCTCAG 0.758145 -22 TAGCCCGGCTACGACCTCAGAAAACCGCAT 11 151 0 ACGACCTCAG 0.859099 -150 AGGGCCAAGCCCCAAATCGGCCACGGCTAA 12 66 0 CCCAAATCGG 0.407988 -229 CCGCAACTAGACGAACTCGGTGTGGCAGGT 17 204 0 ACGAACTCGG 0.883683 -40 GTTCCTTCTCACCATCCCGGAGCAACTACC 26 11 0 ACCATCCCGG 0.839179 -246 CAGCGGGTGCTCCTCCTCGGACGCCGCGAC 26 98 0 TCCTCCTCGG 0.799131 -159 TGACTCTGCGTCCACCACGGGAATGTGCGA 26 176 0 TCCACCACGG 0.84551 -81 ********** Masking position 8 Map Score: 21.5086 Number of sites scoring better than the average of aligned sites = 5394 Number in coding regions = 5091 Number in noncoding regions = 303 Number of orfs with sites within 600 bp upstream = 259 Fraction of orfs with sites within 600 bp upstream = 0.0415997