AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00310_mtub_reg_100.orf -o00310_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: sppA 32 sppA aldB 26 aldB Input sequences: #1 glyA2 300 glyA2 #2 Rv0144 101 hypothetical protein Rv0144 #3 Rv0145 88 hypothetical protein Rv0145 #4 Rv0146 42 hypothetical protein Rv0146 #5 Rv0147 94 hypothetical protein Rv0147 #6 Rv0218 92 hypothetical protein Rv0218 #7 Rv0221 43 hypothetical protein Rv0221 #8 echA1 30 echA1 #9 Rv0223c 98 hypothetical protein Rv0223c #10 Rv0224c 35 hypothetical protein Rv0224c #11 fadA2 141 fadA2 #12 fadE7 35 fadE7 #13 aceA 274 aceA #14 fadB2 81 fadB2 #15 end 194 end #16 lpqP 31 lpqP #17 fadE8 59 fadE8 #18 rpsH 163 rpsH #19 rplF 23 rplF #20 fadA 156 fadA #21 echA6 26 echA6 #22 Rv0976c 197 hypothetical protein Rv0976c #23 echA9 186 echA9 #24 glyA 300 glyA #25 sucA 192 sucA #26 fadA4 300 fadA4 #27 blaC 134 blaC #28 sucB 263 sucB #29 lipB 52 lipB #30 mbtB 98 mbtB #31 echA14 300 echA14 #32 pepQ 33 pepQ #33 echA15 52 echA15 #34 gpsI 300 gpsI #35 echA16 46 echA16 #36 serB2 37 serB2 #37 ctaD 214 ctaD #38 Rv3292 30 hypothetical protein Rv3292 #39 echA18 236 echA18 #40 echA19 73 echA19 #41 echA20 54 echA20 #42 fadA6 64 fadA6 #43 Rv3557c 300 hypothetical protein Rv3557c Motif number 1 AGGGACGGTCGCACCGACCGTGCCTGACCG 1 18 1 GCACCGACCG 0.632195 -283 GGCTGGTTGCGCCCTCCCCGCTCTGTCCTG 1 95 0 GCCCTCCCCG 0.873043 -206 GAGGGCGCAACCAGCCCGGCGCGATCCGGG 1 109 1 CCAGCCCGGC 0.809501 -192 TGGCGACCTCGCCGTGGCCGAAACGATGTC 1 188 1 GCCGTGGCCG 0.94014 -113 AAACGATGTCGCGGCCGCCGGATGCCCATT 1 208 1 GCGGCCGCCG 0.988316 -93 GGAGCAATCGGCTGCCCGGCCAAATGGGCA 1 230 0 GCTGCCCGGC 0.933634 -71 GTACTCGGGGGCGGTCAAGGGTGTTCCCGG 1 258 0 GCGGTCAAGG 0.689116 -43 TCGCGTACGTCCAGACCTGGGCCATGGTTG 2 48 0 CCAGACCTGG 0.533745 -54 CCGCACAGCGGCGGTGATCGCGTACGTCCA 2 65 0 GCGGTGATCG 0.757051 -37 GATCACCGCCGCTGTGCGGCGAGGAGATCC 2 76 1 GCTGTGCGGC 0.605168 -26 CGAGACCTAACCGGCGGCCCCGAAGCGTAG 3 12 1 CCGGCGGCCC 0.898415 -77 GGCGCTCATCCTGTGCTCCCT 4 32 0 GCGCTCATCC 0.651845 -11 AGGCGAAATTGCGCCGACGCATACTGGACC 6 12 0 GCGCCGACGC 0.739855 -81 CCCTACCCAAGCCGAACGCGAAACGAGAAC 9 22 0 GCCGAACGCG 0.678093 -77 ATCGTCGCCGGCGGTCATGGCGTCACCCTA 9 47 0 GCGGTCATGG 0.823877 -52 CCTCCTCATCGCTGCGCTCGGCATCGTCGC 9 69 0 GCTGCGCTCG 0.863301 -30 ATGCGCCGCTCCTCCTCATCGC 9 87 0 GCGCCGCTCC 0.882972 -12 GTGTATTGGCGCGCCCGACCCCCACACGAT 11 27 0 GCGCCCGACC 0.912424 -115 GCCGCGAGGCTACCGGGCCG 12 1 1 GCCGCGAGGC 0.799597 -35 ACTCAATACTGCCCCGGCCCGGTAGCCTCG 12 15 0 GCCCCGGCCC 0.873268 -21 TCGACGTCCTGCGGATCCGG 13 1 0 GCGGATCCGG 0.45392 -274 TGCAAAAAGTCCGCAGGCCGTTGCCGAAAT 13 112 1 CCGCAGGCCG 0.773794 -163 TGCCGAAAACGCTGACGCCCTACCGTCGTC 13 230 0 GCTGACGCCC 0.89901 -45 GCCTAATCCTCCGCACCAGCAGCAAATTTC 15 12 1 CCGCACCAGC 0.419079 -183 CGCTGACTACGCGCTGCTCCGGGGAAACGT 15 47 1 GCGCTGCTCC 0.851948 -148 AACACTTTATGCGCCGGGGCCCACGAATAC 15 91 1 GCGCCGGGGC 0.510169 -104 GGCACGGGATGCTGCCGTCCGTATTCGTGG 15 111 0 GCTGCCGTCC 0.922016 -84 CCGGCCAGCCGCGGCACGGGATGCTGCCGT 15 123 0 GCGGCACGGG 0.559089 -72 CGGATCACGTCCGGCCAGCCGCGGCACGGG 15 133 0 CCGGCCAGCC 0.761976 -62 AACGGTAGGTGCCGCGGGGCTTGAAG 16 7 0 GCCGCGGGGC 0.512764 -25 ATATGACCGCGCTGACGACGATGCAGTGGG 18 31 1 GCTGACGACG 0.732244 -133 TGACGACGATGCAGTGGGGGTACCCCCAGA 18 43 1 GCAGTGGGGG 0.785361 -121 ACCCCCAGACGCGCAGCGGCGAGGGGGCCG 18 64 1 GCGCAGCGGC 0.581532 -100 CGGCGAGGGGGCCGCAAGCGATGAGGAGGA 18 80 1 GCCGCAAGCG 0.541077 -84 CGGTCATCGAGCGCTACTCCTCCTCATCGC 18 97 0 GCGCTACTCC 0.579483 -67 CGTCGTCAGCGCGGTCATCGAGCGCTACTC 18 108 0 GCGGTCATCG 0.802395 -56 CGATGACCGCGCTGACGACGATGCAGAGCG 18 118 1 GCTGACGACG 0.732244 -46 CGAGCGCTACTCCTCCTCATCGC 18 151 0 GCGCTACTCC 0.579483 -13 GGCGGTCGAGCCTATCCGGGC 20 2 1 GCGGTCGAGC 0.925144 -155 GCAAGGTATCGCTGCGGCGCGCATCGTCGC 20 30 0 GCTGCGGCGC 0.52373 -127 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 20 64 0 GCCCCCGGCC 0.955146 -93 TGTTAGGGTGCCGGTACGGGACCTAGTCTT 20 86 1 CCGGTACGGG 0.494153 -71 GGCGCTGACCTCCTGGGGCCGGC 22 4 1 GCTGACCTCC 0.753373 -194 GGCCGGCAAAGCACCCGGCGTCCCGTAGCG 22 27 1 GCACCCGGCG 0.952165 -171 AATGGACGGCGCAGACCGGGCCGCTTCGAC 22 73 1 GCAGACCGGG 0.917268 -125 GCGGATGTTCGCACAGCTCGTAGCCATAGC 23 31 0 GCACAGCTCG 0.633489 -156 GCCCGGGTTCCCGGCCAGCGTTGTCATCCG 23 78 1 CCGGCCAGCG 0.78669 -109 CCCAGCGGTGCCCGCGGGGGCTAAGGTTTA 23 117 0 CCCGCGGGGG 0.532317 -70 CCCGCGGGCACCGCTGGGCGAGCCACGATC 23 129 1 CCGCTGGGCG 0.858557 -58 GCCCAGCTAAGCCCAGGGGGTACCCCCGG 24 10 0 GCCCAGGGGG 0.753232 -291 GCTTAGCTGGGCACTGGGGCCAGGGCGCGG 24 28 1 GCACTGGGGC 0.558768 -273 ATGGAATTCAGCTGTGGCCCTGTGAATTTC 24 65 1 GCTGTGGCCC 0.903004 -236 AATTTCGCACGCTGACGCCGGTTGATGCTG 24 89 1 GCTGACGCCG 0.911156 -212 GTCACGAGTAGCGGTGGGCGGTTTGTGCCC 24 125 0 GCGGTGGGCG 0.979381 -176 GACCTACGTGGCAGCTGGGGCACTAGTGGC 24 152 1 GCAGCTGGGG 0.509906 -149 CGTTTGCGGTGCAGACGTGCAACGGTGGAT 24 185 1 GCAGACGTGC 0.873543 -116 TACCCTTAATGCAGCACACGCCATCCACCG 24 207 0 GCAGCACACG 0.454891 -94 CCAGCGAGCCGCTCCCGGGCTGATTACCCT 24 231 0 GCTCCCGGGC 0.928781 -70 GCCAGTGTATCCAGCGAGCCGCTCCCGGGC 24 241 0 CCAGCGAGCC 0.458153 -60 GTCAGGTGCAGCAGTCACGGGCGCCAGTGT 24 263 0 GCAGTCACGG 0.741017 -38 TACCGCGGTAGTGCGAGCGTCAGG 24 287 0 GCGGTAGTGC 0.573704 -14 TCACCGACTGCCAGCAGGCGCCGCGCAATG 25 75 1 CCAGCAGGCG 0.606922 -118 GAGGCGAACAGCGGCCGTGGCCAACATAAG 25 136 1 GCGGCCGTGG 0.975637 -57 GCGGTGCCGGGCTCCGCGGCGCAA 26 5 0 GCTCCGCGGC 0.494497 -296 GGCACTGCTGGCGGTGCCGGGCTCCGCGGC 26 15 0 GCGGTGCCGG 0.579314 -286 GCAGTGCCTCGCGGATGCCCTGATCGTCGT 26 37 1 GCGGATGCCC 0.577356 -264 CGTCGGTATTGCGGTCGCCGACCTGGACGT 26 123 0 GCGGTCGCCG 0.980364 -178 TTTCGGGTGCGCTGAGGAGGTAGTCATAAC 26 274 1 GCTGAGGAGG 0.692944 -27 ACTGACCGGACCTGCCGGGCTATGGTTTAT 27 15 0 CCTGCCGGGC 0.870009 -120 CAGTCTACGACCGGTCGTCGTAGATCCCGC 27 41 1 CCGGTCGTCG 0.868219 -94 CGTCGTAGATCCCGCCGCCGAGCAGCCGGG 27 56 1 CCCGCCGCCG 0.894159 -79 CCGCCGCCGAGCAGCCGGGGGAGCGCGGCG 27 67 1 GCAGCCGGGG 0.972852 -68 TATCACACGCGCGCAGATGGCAGGCGCCAA 27 108 0 GCGCAGATGG 0.577955 -27 GTCCCGGTGGGCGGAGGTGCG 28 2 0 GCGGAGGTGC 0.729495 -262 GCTGTTGCAACCAGTCGCCCAAACCGTAGC 28 34 1 CCAGTCGCCC 0.777667 -230 GGACATCGGTGCAGTCGGCCGTCCTTGCTA 28 60 0 GCAGTCGGCC 0.950396 -204 CACCGATGTCCCCGCCGAGGTGTCGGCAAC 28 79 1 CCCGCCGAGG 0.716112 -185 CGAGTTGGTGGCCCCGGCGGCCGTTGCCGA 28 101 0 GCCCCGGCGG 0.506106 -163 GATGTGTGTCGCTCCGGGCGCAGTGACAGG 28 141 1 GCTCCGGGCG 0.925591 -123 TCACACGGTCGCGCACCGGGTGCGGAACCC 28 191 0 GCGCACCGGG 0.943721 -73 TCGTCGGTCGGCGCAGGTCCACCTCTGGCC 28 223 0 GCGCAGGTCC 0.876457 -41 GCACGGCTGGGCAGACGGGGTCAAGC 29 7 0 GCAGACGGGG 0.947916 -46 GCCCAGCCGTGCGCTGGCGGCCGAGTAGCC 29 25 1 GCGCTGGCGG 0.587351 -28 ACCTGCGCTACCAGCCCCCCTGTTAAGGAG 30 16 0 CCAGCCCCCC 0.783499 -83 GGGGCTGGTAGCGCAGGTGCGTGGTTCGAA 30 28 1 GCGCAGGTGC 0.643444 -71 AATTGACGTGGCGGTAGACCTTTCGCGCGT 31 51 1 GCGGTAGACC 0.669979 -250 TTTCCAGACGCCACACGCGCGAAAGGTCTA 31 65 0 CCACACGCGC 0.603238 -236 TCTAACGGTGGCCGTCGAGGAATTTTTCCA 31 89 0 GCCGTCGAGG 0.865663 -212 CGCCTCCGTAGCTCAGGTGGATAGAGCAAG 31 136 1 GCTCAGGTGG 0.702258 -165 ACGCCACCATGCTGACCTGCTATTTCCACA 31 212 0 GCTGACCTGC 0.778084 -89 GTGCGGGGTGGCGGTCGTGGCAGCATTGAG 33 15 0 GCGGTCGTGG 0.968551 -38 GACCGCCACCCCGCACCTGCGTAACATCGA 33 29 1 CCGCACCTGC 0.602051 -24 CATTTGCTGGGCCGAACCGGCCCAGAACGT 34 21 0 GCCGAACCGG 0.523672 -280 AGCAAATGGTGCGGTACGCGCAGAACCGCG 34 43 1 GCGGTACGCG 0.872615 -258 CGCTGGAACGGCACACGCGGTTCTGCGCGT 34 58 0 GCACACGCGG 0.882367 -243 ATCCAAGGGAGCACCCCCGGCCTGTATCGG 34 101 1 GCACCCCCGG 0.886956 -200 CCTGTATCGGGCGGTCCTCGGTAGTGGCTG 34 121 1 GCGGTCCTCG 0.944862 -180 CTCGGTAGTGGCTGCCGGGCTCTCCGGATC 34 137 1 GCTGCCGGGC 0.959878 -164 ATCGATCGAAGCGGCCGACCTGCCCCAGAT 34 164 0 GCGGCCGACC 0.951485 -137 TCGATCGATGGCCGTAGCCGCATTCAGACC 34 185 1 GCCGTAGCCG 0.788152 -116 CTCCTGGGAAGCTCTCGGGGTTCGGCGAAC 34 219 1 GCTCTCGGGG 0.917305 -82 TGGGGCCGTACCGGTTGGGCCCCA 36 5 1 GCCGTACCGG 0.482911 -33 TCGAACGCGTGCTGTCCGGCGGG 37 4 0 GCTGTCCGGC 0.914089 -211 TTCGACGGTAGCACTCGGCCAGCCGTCGAC 37 29 1 GCACTCGGCC 0.910536 -186 CACTCGGCCAGCCGTCGACCCCGATTCGCG 37 40 1 GCCGTCGACC 0.83093 -175 CCAACGCTTTCCGCCCGCGCGAATCGGGGT 37 57 0 CCGCCCGCGC 0.80556 -158 CTGCAACGGCCCGCCGGCGGAGTCTGGCAT 37 88 1 CCGCCGGCGG 0.495319 -127 GATCAGGCTGGCGGCAGGCCTGGTCCTACA 37 129 0 GCGGCAGGCC 0.936057 -86 GGGTTTTGGCCCGGTCCGGGCTGGATGTTT 37 184 1 CCGGTCCGGG 0.909772 -31 CGCACTCCTCCAAACATCCAG 37 204 0 GCACTCCTCC 0.731164 -11 TATCGCAACGGCAGTGCCGC 38 21 1 GCAGTGCCGC 0.50594 -10 GACGCGGTGCCGCCGCGGGCGAT 39 4 1 GCGGTGCCGC 0.513456 -233 CGGGCGATACGCTCCGACCGTCAACGAGGA 39 26 1 GCTCCGACCG 0.587745 -211 AAACCACATGGCCGTCCTCCTCGTTGACGG 39 43 0 GCCGTCCTCC 0.863458 -194 GGAGATGCTGGCCGCGGCGGCGACAGACTT 39 87 1 GCCGCGGCGG 0.526643 -150 CGCATAGGCGGCGCTGATCCCTGACCTGAT 39 124 0 GCGCTGATCC 0.589615 -113 CCAGGTCACCGCAGAGGACGCGCATAGGCG 39 144 0 GCAGAGGACG 0.716689 -93 GAGTTCTCTGGCAGCACCCGGTGTCGATAA 39 194 0 GCAGCACCCG 0.754826 -43 AACTCGAGACGCGGCACAGGTCGGCACC 39 219 1 GCGGCACAGG 0.490932 -18 CAAGCTCACACCCGACGGGCAGAAAGAGGT 40 38 1 CCCGACGGGC 0.818926 -36 GAAAGAGGTGGCGGCCGTGGCAACC 40 59 1 GCGGCCGTGG 0.975637 -15 TGCACTCCTGCGGGTTCGCTA 41 44 0 GCACTCCTGC 0.749644 -11 CGACGACGATGCGGTGGGGGTACCACTCAC 42 23 1 GCGGTGGGGG 0.742412 -42 GCACAGCCCGGCCCAGGTGCAGGATCGAGG 43 137 0 GCCCAGGTGC 0.551141 -164 CCTGGGCCGGGCTGTGCGGGCAAGGCGTCC 43 150 1 GCTGTGCGGG 0.762256 -151 TGCGCCCTTCGCTCACCGGGGCATTAGATG 43 200 0 GCTCACCGGG 0.830601 -101 CATCGAGGTCGCAGCTGGCCGAGCAAGCGC 43 261 1 GCAGCTGGCC 0.586253 -40 ********** Masking position 2 Map Score: 164.811 Number of sites scoring better than the average of aligned sites = 123358 Number in coding regions = 115834 Number in noncoding regions = 7524 Number of orfs with sites within 600 bp upstream = 1698 Fraction of orfs with sites within 600 bp upstream = 0.272727 Motif number 2 GTCGCATCATGGCGCCGCTCTACACCTTCG 1 46 0 GGCGCCGCTC 0.97448 -255 GGCGCCATGATGCGACGCCGCAGACTCTCA 1 60 1 TGCGACGCCG 0.933221 -241 GAGCCCGGATCGCGCCGGGCTGGTTGCGCC 1 112 0 CGCGCCGGGC 0.662134 -189 CAACTCCGGTTTCGACGAGCCCGGATCGCG 1 128 0 TTCGACGAGC 0.441526 -173 GTGCGGTTCAGACAAGGGCCAACTCCGGTT 1 147 0 GACAAGGGCC 0.556445 -154 ACATCGTTTCGGCCACGGCGAGGTCGCCAA 1 187 0 GGCCACGGCG 0.960767 -114 CCGAAACGATGTCGCGGCCGCCGGATGCCC 1 205 1 GTCGCGGCCG 0.895743 -96 CTCGGGGGCGGTCAAGGGTGTTCCCGGAGC 1 255 0 GTCAAGGGTG 0.265274 -46 GCCGCTGTGCGGCGAGGAGATCCGAAACG 2 83 1 GGCGAGGAGA 0.371887 -19 ACTACGCTTCGGGGCCGCCGGTTAGGTCTC 3 13 0 GGGGCCGCCG 0.685338 -76 TGGTTCTCGTGATGCCGGTG 4 1 0 GATGCCGGTG 0.422613 -42 GAGGCGAAATTGCGCCGACGCATACTGGAC 6 13 0 TGCGCCGACG 0.87607 -80 GCTTGGGTAGGGTGACGCCATGACCGCCGG 9 40 1 GGTGACGCCA 0.666807 -59 GCTCGGCATCGTCGCCGGCGGTCATGGCGT 9 54 0 GTCGCCGGCG 0.974272 -45 CGCCGGCGACGATGCCGAGCGCAGCGATGA 9 64 1 GATGCCGAGC 0.392707 -35 ATGCGCCGCTCCTCCTCATCG 9 88 0 TGCGCCGCTC 0.839119 -11 GGGATCGGCCGTTGAGGGCCATACTACCCA 11 98 0 GTTGAGGGCC 0.435318 -44 CACTCAATACTGCCCCGGCCCGGTAGCCTC 12 16 0 TGCCCCGGCC 0.817025 -20 TGCGAATTTCGGCAACGGCCTGCGGACTTT 13 117 0 GGCAACGGCC 0.966023 -158 GGCACAGCGTGTCAACGCTGGTCCACCCAT 13 153 0 GTCAACGCTG 0.655385 -122 TCCAGGCGGTGTCAACGGCGCAGCTTCACT 13 202 0 GTCAACGGCG 0.880632 -73 ACACCGCCTGGACGACGGTAGGGCGTCAGC 13 220 1 GACGACGGTA 0.442178 -55 ATTTGCTGCTGGTGCGGAGGATTAGGCA 15 9 0 GGTGCGGAGG 0.353461 -186 CACGAGCGCTGACTACGCGCTGCTCCGGGG 15 41 1 GACTACGCGC 0.534846 -154 GACTACGCGCTGCTCCGGGGAAACGTATCC 15 51 1 TGCTCCGGGG 0.443691 -144 CGTATTCGTGGGCCCCGGCGCATAAAGTGT 15 92 0 GGCCCCGGCG 0.964769 -103 GTCAACGGTAGGTGCCGCGGGGCTTGAAG 16 10 0 GGTGCCGCGG 0.8765 -22 AAGTCAACGGTAGGTGCCGCGG 16 20 0 GTCAACGGTA 0.22815 -12 TGACCGCGCTGACGACGATGCAGTGGGGGT 18 34 1 GACGACGATG 0.654328 -130 GACGCGCAGCGGCGAGGGGGCCGCAAGCGA 18 71 1 GGCGAGGGGG 0.895703 -93 TGACCGCGCTGACGACGATGCAGAGCGCAA 18 121 1 GACGACGATG 0.654328 -43 AGCCTATCCGGGCGACGATGCGCGCCGCAG 20 19 1 GGCGACGATG 0.899547 -138 GCCCTGTTAGGGTGCCGGTACGGGACCTAG 20 82 1 GGTGCCGGTA 0.37041 -75 GGCGCTGACCTCCTGGGGCC 22 1 1 GGCGCTGACC 0.623993 -197 CGCCGGGTGCTTTGCCGGCCCCAGGAGGTC 22 17 0 TTTGCCGGCC 0.40879 -181 CGGCCCGGTCTGCGCCGTCCATTGGAGTAG 22 66 0 TGCGCCGTCC 0.56047 -132 CCTTGGGATCGGCGACGCTACCAACCAACC 22 148 0 GGCGACGCTA 0.803901 -50 TGATGGCTATGGCTACGAGCTGTGCGAACA 23 26 1 GGCTACGAGC 0.668754 -161 GTACCCGGATGACAACGCTGGCCGGGAACC 23 83 0 GACAACGCTG 0.575223 -104 AGCCCCCGCGGGCACCGCTGGGCGAGCCAC 23 125 1 GGCACCGCTG 0.897236 -62 CTTCAGGGGAGGCGAGGCCC 23 177 1 GGCGAGGCCC 0.960995 -10 TGGGCACTGGGGCCAGGGCGCGGTGTTTCG 24 35 1 GGCCAGGGCG 0.813156 -266 GGTGCAGACGTGCAACGGTGGATGGCGTGT 24 192 1 TGCAACGGTG 0.444563 -109 AGGTGCAGCAGTCACGGGCGCCAGTGTATC 24 260 0 GTCACGGGCG 0.676028 -41 AGAGAGACCGGGCAACGCGCG 25 2 0 GGCAACGCGC 0.933106 -191 ACTGCCAGCAGGCGCCGCGCAATGCGCTTG 25 81 1 GGCGCCGCGC 0.986226 -112 AACTTATGTTGGCCACGGCCGCTGTTCGCC 25 138 0 GGCCACGGCC 0.937942 -55 TTGCGCCGCGGAGCCCGGCAC 26 2 1 TGCGCCGCGG 0.89385 -299 CGCGGAGCCCGGCACCGCCAGCAGTGCCTC 26 17 1 GGCACCGCCA 0.862842 -284 CATGATCCTGGTCCACGAGGAAATCAACGA 26 63 0 GTCCACGAGG 0.572011 -238 ACCACTCGATGGCAACGTCCAGGTCGGCGA 26 109 1 GGCAACGTCC 0.645248 -192 CGGTATTGCGGTCGCCGACCTGGACGTTGC 26 120 0 GTCGCCGACC 0.946932 -181 GACCGATCAAGTCCACGCCCGTCACATGCT 26 183 0 GTCCACGCCC 0.904384 -118 ACCGTTGTGTGATGACGACCGATCAAGTCC 26 199 0 GATGACGACC 0.517645 -102 GGTCCGGTCAGTCTACGACCGGTCGTCGTA 27 33 1 GTCTACGACC 0.575482 -102 CGGCGGGATCTACGACGACCGGTCGTAGAC 27 43 0 TACGACGACC 0.560108 -92 GGTCGTCGTAGATCCCGCCGCCGAGCAGCC 27 53 1 GATCCCGCCG 0.476402 -82 AAGCGCATTCGACGCCGCGCTCCCCCGGCT 27 79 0 GACGCCGCGC 0.938023 -56 AATGCGCTTTGGCGCCTGCCATCTGCGCGC 27 100 1 GGCGCCTGCC 0.701281 -35 CTGCACCGATGTCCCCGCCGAGGTGTCGGC 28 76 1 GTCCCCGCCG 0.917358 -188 CCGAGGTGTCGGCAACGGCCGCCGGGGCCA 28 93 1 GGCAACGGCC 0.966023 -171 ACACATCCAGGGCGCGGCGAGTTGGTGGCC 28 118 0 GGCGCGGCGA 0.684951 -146 GAGGTGGACCTGCGCCGACCGACGATCGAT 28 228 1 TGCGCCGACC 0.891409 -36 TTGTACGTGTGTCGAGGATCACACAATAAC 31 17 1 GTCGAGGATC 0.390519 -284 GGAAAAATTCCTCGACGGCCACCGTTAGAT 31 90 1 CTCGACGGCC 0.491227 -211 GAGCTACGGAGGCGATGCGCAGGTCAGTTT 31 120 0 GGCGATGCGC 0.592862 -181 CTCGTTATGGGTCGACGCCCAGAGTCGCCT 31 255 1 GTCGACGCCC 0.972433 -46 CGGGCACCTCCGTGGTTTGAGT 31 289 0 GGCACCTCCG 0.37018 -12 AGCGAGTACCGTCAAGGGTC 32 24 1 GTCAAGGGTC 0.295424 -10 AACTCAATGCTGCCACGACCGCCACCCCGC 33 13 1 TGCCACGACC 0.617287 -40 GTCTGAATGCGGCTACGGCCATCGATCGAA 34 184 0 GGCTACGGCC 0.918334 -117 GATTGCGCGTGACGACGCGAAACAGCTCAA 34 255 1 GACGACGCGA 0.61901 -46 GGGCCCAACCGGTACGGCCCCA 36 3 0 GGTACGGCCC 0.50632 -35 GCGAATCGGGGTCGACGGCTGGCCGAGTGC 37 39 0 GTCGACGGCT 0.374943 -176 AGCGTTGGTCTGCAACGGCCCGCCGGCGGA 37 79 1 TGCAACGGCC 0.797587 -136 GTAAATGCCAGACTCCGCCGGCGGGCCGTT 37 92 0 GACTCCGCCG 0.753215 -123 ACTGGGTTTTGGCCCGGTCCGGGCTGGATG 37 181 1 GGCCCGGTCC 0.335414 -34 CGTTGCGATAGTCTCCGGCC 38 1 0 GTCTCCGGCC 0.819932 -30 GCGGCACTGCCGTTGCGATAGT 38 19 0 GGCACTGCCG 0.506469 -12 GACGCGGTGCCGCCGCGGGCGATAC 39 6 1 GGTGCCGCCG 0.941358 -231 CGCTCCGACCGTCAACGAGGAGGACGGCCA 39 35 1 GTCAACGAGG 0.569602 -202 GCCCAAGTCTGTCGCCGCCGCGGCCAGCAT 39 91 0 GTCGCCGCCG 0.976414 -146 TCCCTGACCTGATGCCGCCCAAGTCTGTCG 39 107 0 GATGCCGCCC 0.797599 -130 GACGCGCATAGGCGGCGCTGATCCCTGACC 39 128 0 GGCGGCGCTG 0.48718 -109 GGTGCCGACCTGTGCCGCGT 39 227 0 GGTGCCGACC 0.873705 -10 GGTTGCCACGGCCGCCACCTCTT 40 61 0 TGCCACGGCC 0.795547 -13 AATGCCCCGTGTCGACGACGATGCGGTGGG 42 11 1 GTCGACGACG 0.918524 -54 ACCACTCACTGGCAACGGGAGAGGAGCGGT 42 44 1 GGCAACGGGA 0.651186 -21 AGCCTAATCGGACTACGCGGATCG 43 5 0 GACTACGCGG 0.49751 -296 ATTAGGCTATGACGACGCGCGGAAGAATAT 43 27 1 GACGACGCGC 0.917389 -274 TCGCATCTAATGCCCCGGTGAGCGAAGGGC 43 197 1 TGCCCCGGTG 0.524062 -104 ********** Masking position 7 Map Score: 101.595 Number of sites scoring better than the average of aligned sites = 88688 Number in coding regions = 83968 Number in noncoding regions = 4720 Number of orfs with sites within 600 bp upstream = 1419 Fraction of orfs with sites within 600 bp upstream = 0.227915 Motif number 3 CAAGGGCCAACTCCGGTTTCGACGAGCCCGG 1 134 0 CTCCGGTTCG 0.85172 -167 CAGCCGATTGCTCCGGGAACACCCTTGACCG 1 246 1 CTCCGGGACA 0.833466 -55 CCTTGACCGCCCCCGAGTACGCCGAACAGAC 1 268 1 CCCCGAGTCG 0.806818 -33 TCCGTATCGTGTGGGGGTCGGGCGCGCCAAT 11 22 1 GTGGGGGTGG 0.567878 -120 GATCGACGTCCTGCGGATCCGG 13 2 0 CTGCGGATCG 0.77638 -273 GTGAAATTTGCTGCTGGTGCGGAGGATTAGG 15 13 0 CTGCTGGTCG 0.77027 -182 ATGTTCTAGTCCCCGTGTCCCG 18 2 0 CCCCGTGTCC 0.886026 -162 CGCTGCGCGTCTGGGGGTACCCCCACTGCAT 18 51 0 CTGGGGGTCC 0.984875 -113 CGGCAAAGCACCCGGCGTCCCGTAGCGAAAC 22 30 1 CCCGGCGTCC 0.920902 -168 TCAGTAGTAGGCCCGGGTTCCCGGCCAGCGT 23 68 1 GCCCGGGTCC 0.946265 -119 ACCTTAGCCCCCGCGGGCACCGCTGGGCGAG 23 120 1 CCGCGGGCCC 0.938154 -67 GCGGGCACCGCTGGGCGAGCCACGATCTAGA 23 132 1 CTGGGCGACC 0.794022 -55 CCGGGGGTACCCCCTGGGCTT 24 1 1 CCGGGGGTCC 0.985648 -300 AGGGTAATCAGCCCGGGAGCGGCTCGCTGGA 24 231 1 GCCCGGGACG 0.886781 -70 CGAGGCACTGCTGGCGGTGCCGGGCTCCGCG 26 17 0 CTGGCGGTCC 0.726369 -284 CAACGTCCAGGTCGGCGACCGCAATACCGAC 26 121 1 GTCGGCGACG 0.49314 -180 GAATCTGCTTCTCCGGGTCGGTCAGATCGGC 26 243 1 CTCCGGGTGG 0.895622 -58 CGCCGAGCAGCCGGGGGAGCGCGGCGTCGAA 27 71 1 CCGGGGGACG 0.968301 -64 ATGTGTGTCGCTCCGGGCGCAGTGACAGGAT 28 142 1 CTCCGGGCCA 0.709839 -122 CACGGTCGCGCACCGGGTGCGGAACCCAGGT 28 187 0 CACCGGGTCG 0.956273 -77 ACACGCGGTTCTGCGCGTACCGCACCATTTG 34 45 0 CTGCGCGTCC 0.941944 -256 ACGCGCAGAACCGCGTGTGCCGTTCCAGCGA 34 58 1 CCGCGTGTCC 0.892307 -243 CCGATACAGGCCGGGGGTGCTCCCTTGGATA 34 100 0 CCGGGGGTCT 0.896795 -201 CTGGGAAGCTCTCGGGGTTCGGCGAACCCGC 34 222 1 CTCGGGGTCG 0.988085 -79 ACGCGCAATCCAGCGGGTTCGCCGAACCCCG 34 234 0 CAGCGGGTCG 0.958863 -67 CGGCCAGCATCTCCGGGTTCACCAATGCAAA 39 70 0 CTCCGGGTCA 0.938554 -167 TCTTTATCGACACCGGGTGCTGCCAGAGAAC 39 191 1 CACCGGGTCT 0.670876 -46 TGCACTCCTGCGGGTTCGCTACCTAAGC 41 37 0 CTGCGGGTCG 0.991863 -18 CGACGATGCGGTGGGGGTACCACTCACTGGC 42 26 1 GTGGGGGTCC 0.928076 -39 CGGGAGACATCTGGGGTATCGGCGGAGAGTG 43 89 0 CTGGGGTACG 0.592596 -212 CATCTAATGCCCCGGTGAGCGAAGGGCGCAT 43 200 1 CCCGGTGACG 0.714876 -101 ******** ** Masking position 10 Map Score: 40.964 Number of sites scoring better than the average of aligned sites = 6017 Number in coding regions = 5607 Number in noncoding regions = 410 Number of orfs with sites within 600 bp upstream = 335 Fraction of orfs with sites within 600 bp upstream = 0.0538066 Motif number 4 AGGCCACCATCCCGATCCTCGTTCGACTAAC 6 71 0 CCCGACCTCG 0.546354 -22 ACTGGCCTCATACTCGTCCGGTGTTT 8 15 0 CCTCAACTCG 0.628096 -16 ATGCGCCGCTCCTCCTCATCGCTGCGCTCGG 9 78 0 CCTCCCATCG 0.975006 -21 TGCGCCGTTGACACCGCCTGGACGACGGTAG 13 210 1 ACACCCCTGG 0.832647 -65 CTGGTGAGACCCACACCCTCGGATCACGTCC 15 151 0 CCACACCTCG 0.936053 -44 CTTCAAGCCCCGCGGCACCTACCG 16 4 1 CAAGCCCGCG 0.695591 -28 GGGGGTACCCCCACTGCATCGTCGTCAGCGC 18 39 0 CCACTCATCG 0.804813 -125 GAGCGCTACTCCTCCTCATCGCTTGCGGCCC 18 88 0 CCTCCCATCG 0.975006 -76 GAGCGCTACTCCTCCTCATCGCTTGCGCTCT 18 142 0 CCTCCCATCG 0.975006 -22 TAACGCTTTGCCAGCGATTCGCCAGAGAGAC 25 24 0 CCAGCATTCG 0.694947 -169 CTCTTCGACCAGCCATTCGTTTTGCCCGA 25 174 0 CCAGCATTCG 0.694947 -19 ACCACCTTGGCATGATCCTGGTCCACGAGGA 26 72 0 CATGACCTGG 0.382316 -229 GTTATGACTACCTCCTCAGCGCACCCGAAAG 26 273 0 CCTCCCAGCG 0.851496 -28 GCCGCCGGGGCCACCAACTCGCCGCGCCCTG 28 110 1 CCACCACTCG 0.9554 -154 TAGGTTTCGACATCCACCTGGGTTCCGCACC 28 172 1 CATCCCCTGG 0.877803 -92 TACTCGGCCGCCAGCGCACGGCTGGGCAGAC 29 21 0 CCAGCCACGG 0.632502 -32 GATAAACTGACCTGCGCATCGCCTCCGTAGC 31 117 1 CCTGCCATCG 0.964238 -184 GCGTGGCTTGACACCGCCTCGTTATGGGTCG 31 238 1 ACACCCCTCG 0.907817 -63 CCGGTTCGGCCCAGCAAATGGTGCGGTACGC 34 31 1 CCAGCAATGG 0.796953 -270 ACCACATGGCCGTCCTCCTCGTTGACGGTCG 39 40 0 CGTCCCCTCG 0.813953 -197 TCACCAATGCAAACCACATGGCCGTCCTCCT 39 52 0 AAACCCATGG 0.333719 -185 AGTGGTACCCCCACCGCATCGTCGTCGACAC 42 19 0 CCACCCATCG 0.984054 -46 GGTGGGGGTACCACTCACTGGCAACGGGAGA 42 35 1 CCACTACTGG 0.416817 -30 GATCAGGTACCAAGCCCCTCGATCCTGCACC 43 121 1 CAAGCCCTCG 0.93956 -180 GCCCCTCGATCCTGCACCTGGGCCGGGCTGT 43 134 1 CCTGCCCTGG 0.962812 -167 TCCCGGATTCCCACCCCATCGAGGTCGCAGC 43 245 1 CCACCCATCG 0.984054 -56 GCTGGCCGAGCAAGCGCTTGGTTGATAGTCT 43 274 1 CAAGCCTTGG 0.547113 -27 ***** ***** Masking position 11 Map Score: 33.9621 Number of sites scoring better than the average of aligned sites = 7786 Number in coding regions = 7306 Number in noncoding regions = 480 Number of orfs with sites within 600 bp upstream = 367 Fraction of orfs with sites within 600 bp upstream = 0.0589464 Motif number 5 CAGCCCGGCGCGATCCGGGCTCGTCGAAACCG 1 120 1 CGTCCGGGCC 0.836288 -181 GCCGCGACATCGTTTCGGCCACGGCGAGGTCG 1 191 0 CGTTCGGCCC 0.920975 -110 CACATCACTACGCTTCGGGGCCGCCGGTTAGG 3 17 0 CGTTCGGGGC 0.963778 -72 AACGAGGATCGGGATGGTGGCCTG 6 79 1 GGATGGTGGC 0.64523 -14 GCCGGCCAATTGTATGGTCGCCCTATGAGTAG 7 13 1 TGATGGTCGC 0.67281 -31 CGCTGCGCTCGGCATCGTCGCCGGCGGTCATG 9 58 0 GGATCGTCGC 0.901209 -41 CCTTCCGTATCGTGTGGGGGTCGGGCGCGCCA 11 19 1 CGGTGGGGGC 0.939129 -123 TACACGTAACCGTATCGAGGACTAACTTACTT 11 52 1 CGATCGAGGC 0.883047 -90 GGTAAACCCACGGATCGACGTCCTGCGGATCC 13 13 0 CGATCGACGC 0.937547 -262 GCCTGGACGACGGTAGGGCGTCAGCGTTTTCG 13 225 1 CGTAGGGCGC 0.471994 -50 GCAAAAGTGGCGCTTTTGCGTCTGCTCGCGCA 14 46 1 CGTTTTGCGC 0.327742 -36 AAACACTTTATGCGCCGGGGCCCACGAATACG 15 90 1 TGGCCGGGGC 0.82494 -105 GTACCCCCACTGCATCGTCGTCAGCGCGGTCA 18 34 0 TGATCGTCGC 0.840291 -130 GCTTGCGCTCTGCATCGTCGTCAGCGCGGTCA 18 121 0 TGATCGTCGC 0.840291 -43 CGCTGCGGCGCGCATCGTCGCCCGGATAGGCT 20 19 0 CGATCGTCGC 0.950292 -138 GACTAGGTCCCGTACCGGCACCCTAACAGGGC 20 82 0 CGACCGGCAC 0.77613 -75 TTCCTCCCTTGGGATCGGCGACGCTACCAACC 22 152 0 GGATCGGCGC 0.980586 -46 GGCTTAGCTGGGCACTGGGGCCAGGGCGCGGT 24 27 1 GGACTGGGGC 0.652411 -274 GTTGATGCTGTGAGTCGGGCACAAACCGCCCA 24 109 1 TGGTCGGGCC 0.705213 -192 CACTGCTGGCGGTGCCGGGCTCCGCGGCGCAA 26 11 0 GGGCCGGGCC 0.783917 -290 TGGCAACGTCCAGGTCGGCGACCGCAATACCG 26 118 1 CAGTCGGCGC 0.571801 -183 GGCGTGGACTTGATCGGTCGTCATCACACAAC 26 194 1 TGTCGGTCGC 0.475746 -107 GCTCGGCGGCGGGATCTACGACGACCGGTCGT 27 47 0 GGATCTACGC 0.441403 -88 GCGTCGAATGCGCTTTGGCGCCTGCCATCTGC 27 94 1 CGTTTGGCGC 0.817586 -41 TCCTTGCTACGGTTTGGGCGACTGGTTGCAAC 28 37 0 GGTTGGGCGC 0.909165 -227 TCCCCGCCGAGGTGTCGGCAACGGCCGCCGGG 28 87 1 GGGTCGGCAC 0.590733 -177 GCGAGTTGGTGGCCCCGGCGGCCGTTGCCGAC 28 100 0 GGCCCGGCGC 0.733499 -164 GGATGTGTGTCGCTCCGGGCGCAGTGACAGGA 28 140 1 CGTCCGGGCC 0.836288 -124 CACACGGTCGCGCACCGGGTGCGGAACCCAGG 28 188 0 CGACCGGGTC 0.497227 -76 AGGCCAGAGGTGGACCTGCGCCGACCGACGAT 28 222 1 TGACCTGCGC 0.731608 -42 TGCCCAGCCGTGCGCTGGCGGCCGAGTAGCCT 29 24 1 TGGCTGGCGC 0.614519 -29 CGGCACGACTCGAACGTGCGACCTAGGGATTA 31 173 0 CGACGTGCGC 0.794742 -128 ACGTTCGAGTCGTGCCGGGGGCACTGTGGAAA 31 188 1 CGGCCGGGGC 0.971752 -113 CGCCTCGTTATGGGTCGACGCCCAGAGTCGCC 31 252 1 TGGTCGACGC 0.730594 -49 CGGCCTGTATCGGGCGGTCCTCGGTAGTGGCT 34 118 1 CGGCGGTCCC 0.518553 -183 CCGGGCTCTCCGGATCTGGGGCAGGTCGGCCG 34 151 1 CGATCTGGGC 0.851132 -150 GAAGCTCTCGGGGTTCGGCGAACCCGCTGGAT 34 226 1 GGTTCGGCGA 0.439762 -75 CCAGAGAGGCCGCACGGACGTC 34 289 1 CGACGGACGC 0.836423 -12 GGGGCCGTACCGGTTGGGCCCCATCTGAAGGT 36 12 1 CGTTGGGCCC 0.819976 -26 TCCGCCCGCGCGAATCGGGGTCGACGGCTGGC 37 46 0 CGATCGGGGC 0.98133 -169 CATTTACGACGGTTTGTAGGACCAGGCCTGCC 37 115 1 GGTTGTAGGC 0.0729194 -100 ACGGTCGGAGCGTATCGCCCGCGGCGGCACCG 39 15 0 CGATCGCCCC 0.467545 -222 AGATGCTGGCCGCGGCGGCGACAGACTTGGGC 39 89 1 CGGGCGGCGC 0.834083 -148 GCAGAGGACGCGCATAGGCGGCGCTGATCCCT 39 132 0 CGATAGGCGC 0.729018 -105 GTACCCCCACCGCATCGTCGTCGACACGGGGC 42 14 0 CGATCGTCGC 0.950297 -51 AGACATCTGGGGTATCGGCGGAGAGTGCCTAG 43 84 0 GGATCGGCGA 0.60787 -217 CCCTCGATCCTGCACCTGGGCCGGGCTGTGCG 43 136 1 TGACCTGGGC 0.578257 -165 TTGCTGGCGCTGGATGGACGCCTTGCCCGCAC 43 163 0 TGATGGACGC 0.617529 -138 ** ******* * Masking position 2 Map Score: 60.6828 Number of sites scoring better than the average of aligned sites = 26567 Number in coding regions = 24871 Number in noncoding regions = 1696 Number of orfs with sites within 600 bp upstream = 948 Fraction of orfs with sites within 600 bp upstream = 0.152265 Motif number 6 GATCGCGCCGGGCTGGTTGCGCCCTCCCCGCT 1 103 0 GCTGGTTGGC 0.433647 -198 TTTCGACGAGCCCGGATCGCGCCGGGCTGGTT 1 117 0 CCGGATCGGC 0.56439 -184 GCTCGTCGAAACCGGAGTTGGCCCTTGTCTGA 1 138 1 ACGGAGTTGC 0.358055 -163 GTCGCCAACAGTTCGATCGTGCGGTTCAGACA 1 163 0 GTCGATCGGC 0.813881 -138 GCTGCTGATCGTCGGATAGCGCTGGCCAACTC 2 15 0 GCGGATAGGC 0.961632 -87 GCCGCACAGCGGCGGTGATCGCGTACGTCCAG 2 64 0 GCGGTGATGC 0.685094 -38 TCGGTACAGCGATGGCTTTGGCAGGCTGCGGT 6 41 1 GTGGCTTTGC 0.691017 -52 CGCCGGCGACGATGCCGAGCGCAGCGATGAGG 9 64 1 GTGCCGAGGC 0.696445 -35 ATCGTGTGGGGGTCGGGCGCGCCAATACACGT 11 27 1 GTCGGGCGGC 0.674584 -115 GCTGTGCCATGGTCGAGTTAGCACACCAGTGA 13 175 1 GTCGAGTTGC 0.617414 -100 GCGCTTTTGCGTCTGCTCGCGCATTTGAGGAG 14 55 1 GCTGCTCGGC 0.786888 -27 CTGCTGGTGCGGAGGATTAGGCA 15 2 0 GAGGATTAGC 0.11371 -193 CGCTGACGACGATGCAGAGCGCAAGCGATGAG 18 127 1 GTGCAGAGGC 0.663835 -37 CCTGTTTCGCGACGGAGATCGCTTCCTGAGTC 22 100 0 GCGGAGATGC 0.903897 -98 ATCCTCTCTTGATGGCTATGGCTACGAGCTGT 23 17 1 GTGGCTATGC 0.670911 -170 GCCCAGCGGTGCCCGCGGGGGCTAAGGTTTAT 23 116 0 GCCGCGGGGC 0.494518 -71 AGTAGCGGTGGGCGGTTTGTGCCCGACTCACA 24 117 0 GCGGTTTGGC 0.864125 -184 TGCAACGGTGGATGGCGTGTGCTGCATTAAGG 24 202 1 GTGGCGTGGC 0.953835 -99 CAACGTCCAGGTCGGCGACCGCAATACCGACG 26 121 1 GCGGCGACGC 0.770767 -180 TAGGCTACTCGGCCGCCAGCGCACGGCTGGGC 29 25 0 GCCGCCAGGC 0.656659 -28 CCGTAGCTCAGGTGGATAGAGCAAGGGCCTTC 31 141 1 GTGGATAGGC 0.896969 -160 GTACGCGCAGAACCGCGTGTGCCGTTCCAGCG 34 56 1 ACCGCGTGGC 0.591465 -245 CGGCGAACCCGCTGGATTGCGCGTGACGACGC 34 241 1 GTGGATTGGC 0.905171 -60 GACGCGGTGCCGCCGCGGGCGATACGCTCC 39 9 1 GCGCCGCGGC 0.726091 -228 GATCCGCGTAGTCCGATTAGGCTATGACGACG 43 12 1 GCCGATTAGC 0.566774 -289 TGGGCATTCTGGCGGATTGCGCATATTCTTCC 43 47 0 GCGGATTGGC 0.964905 -254 CTGGGGTATCGGCGGAGAGTGCCTAGCGTTCT 43 78 0 GCGGAGAGGC 0.97902 -223 ACCTGGGCCGGGCTGTGCGGGCAAGGCGTCCA 43 149 1 GCTGTGCGGC 0.577903 -152 GGTCGCAGCTGGCCGAGCAAGCGCTTGGTTGA 43 267 1 GCCGAGCAGC 0.710652 -34 * ******* ** Masking position 11 Map Score: 20.8116 Number of sites scoring better than the average of aligned sites = 14182 Number in coding regions = 13324 Number in noncoding regions = 858 Number of orfs with sites within 600 bp upstream = 606 Fraction of orfs with sites within 600 bp upstream = 0.0973338 Motif number 7 TCGGTGCGACCGTCCCTGTCTCCA 1 5 0 CGTCCCTGTC 0.722927 -296 CGGTCAGGCACGGTCGGTGCGACCGTCCCT 1 18 0 CGGTCGGTGC 0.723821 -283 CAGCCCGGCGCGATCCGGGCTCGTCGAAAC 1 120 1 CGATCCGGGC 0.955628 -181 GACATCGTTTCGGCCACGGCGAGGTCGCCA 1 188 0 CGGCCACGGC 0.830993 -113 GAGCAATCGGCTGCCCGGCCAAATGGGCAT 1 229 0 CTGCCCGGCC 0.590249 -72 CAGCTCAGTCCGGTCTGTTCGGCGT 1 286 0 CAGTCCGGTC 0.900192 -15 ATCAGCAGCGCAACCATGGCCCAGGTCTGG 2 38 1 CAACCATGGC 0.645281 -64 GGCGCTCATCCTGTGCTCCCTCTGGT 4 27 0 CATCCTGTGC 0.480439 -16 CAGGCCACCATCCCGATCCTCGTTCGAC 6 75 0 CATCCCGATC 0.166957 -18 TCGTCGCCGGCGGTCATGGCGTCACCCTAC 9 46 0 CGGTCATGGC 0.870332 -53 GGGGATCGGCCGTTGAGGGCCATACTACCC 11 99 0 CGTTGAGGGC 0.569099 -43 AATACTGCCCCGGCCCGGTAGCCTCGCGGC 12 11 0 CGGCCCGGTA 0.687268 -25 TGTGCTAACTCGACCATGGCACAGCGTGTC 13 170 0 CGACCATGGC 0.804228 -105 CGGACGGCAGCATCCCGTGCCGCGGCTGGC 15 120 1 CATCCCGTGC 0.794705 -75 GCATCGTCGTCAGCGCGGTCATATGTTCTA 18 25 0 CAGCGCGGTC 0.698881 -139 GCATCGTCGTCAGCGCGGTCATCGAGCGCT 18 112 0 CAGCGCGGTC 0.698881 -52 GCGGTCGAGCCTATCCGGGCGACGATGCGC 20 12 1 CTATCCGGGC 0.589989 -145 TGAGTCGAAGCGGCCCGGTCTGCGCCGTCC 22 76 0 CGGCCCGGTC 0.98251 -122 GGCACCACAGTCAGGGCCATGCGATTC 22 181 0 CAGTCAGGGC 0.952445 -17 CGCTGGCCGGGAACCCGGGCCTACTACTGA 23 68 0 GAACCCGGGC 0.614156 -119 CTGGGCACTGGGGCCAGGGCGCGGTGTTTC 24 34 1 GGGCCAGGGC 0.883021 -267 TAAGGGTAATCAGCCCGGGAGCGGCTCGCT 24 229 1 CAGCCCGGGA 0.822608 -72 AGGCGAACAGCGGCCGTGGCCAACATAAGT 25 137 1 CGGCCGTGGC 0.911352 -56 AAATCAACGACGATCAGGGCATCCGCGAGG 26 43 0 CGATCAGGGC 0.909391 -258 TCGATGGCAACGTCCAGGTCGGCGACCGCA 26 114 1 CGTCCAGGTC 0.891225 -187 GTCCTTGCTACGGTTTGGGCGACTGGTTGC 28 40 0 CGGTTTGGGC 0.352511 -224 GAGCGACACACATCCAGGGCGCGGCGAGTT 28 125 0 CATCCAGGGC 0.945321 -139 GGATGTGTGTCGCTCCGGGCGCAGTGACAG 28 140 1 CGCTCCGGGC 0.851195 -124 AAAATTAGGGCAGCCTGTGCTAACAGGGGA 30 73 1 CAGCCTGTGC 0.747125 -26 TGCGGGGTGGCGGTCGTGGCAGCATTGAGT 33 14 0 CGGTCGTGGC 0.788471 -39 AGAGTGAGAACGTTCTGGGCCGGTTCGGCC 34 12 1 CGTTCTGGGC 0.878874 -289 GGTTTTGGCCCGGTCCGGGCTGGATGTTTG 37 185 1 CGGTCCGGGC 0.989801 -30 CCTAAGCTACCAGCCAGGTCACCGCAGAGG 39 157 0 CAGCCAGGTC 0.920588 -80 GGTGCCGACCTGTGCCGCGTCTCGA 39 222 0 CGACCTGTGC 0.596865 -15 AAAGAGGTGGCGGCCGTGGCAACC 40 60 1 CGGCCGTGGC 0.911352 -14 GAGTGCCTAGCGTTCTGGGCATTCTGGCGG 43 64 0 CGTTCTGGGC 0.878874 -237 CTTGCCCGCACAGCCCGGCCCAGGTGCAGG 43 144 0 CAGCCCGGCC 0.905188 -157 GCAAGGCGTCCATCCAGCGCCAGCAACGTC 43 169 1 CATCCAGCGC 0.397451 -132 ********** Masking position 10 Map Score: 46.663 Number of sites scoring better than the average of aligned sites = 16233 Number in coding regions = 15235 Number in noncoding regions = 998 Number of orfs with sites within 600 bp upstream = 656 Fraction of orfs with sites within 600 bp upstream = 0.105365 Motif number 8 GGTCGCCCTATGAGTAGGGGGCTGCG 7 28 1 TGAGTAGGGG 0.895074 -16 AGCGCAGCGATGAGGAGGAGCGGCGCAT 9 81 1 TGAGGAGGAG 0.994471 -18 CTCGCGCATTTGAGGAGGAACA 14 70 1 TGAGGAGGAA 0.983812 -12 TTGCTGCTGGTGCGGAGGATTAGGCA 15 7 0 TGCGGAGGAT 0.913831 -188 CCGCAAGCGATGAGGAGGAGTAGCGCTCGA 18 91 1 TGAGGAGGAG 0.994471 -73 GCGCAAGCGATGAGGAGGAGTAGCGCTCG 18 145 1 TGAGGAGGAG 0.994471 -19 TCGGGTGCGCTGAGGAGGTAGTCATAACGA 26 276 1 TGAGGAGGTA 0.937475 -25 ********** Masking position 6 Map Score: 8.27642 Number of sites scoring better than the average of aligned sites = 81 Number in coding regions = 31 Number in noncoding regions = 50 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 9 TCCGGGCTCGTCGAAACCGGAGTTGGCCCTT 1 133 1 TCGAAACGGA 0.384269 -168 GTCTGTTCGGCGTACTCGGGGGCGGTCAAGG 1 268 0 CGTACTCGGG 0.630616 -33 ATAGCGCTGGCCAACTCTGGG 2 1 0 CCAACTCGGG 0.717684 -101 ATACACGTAACCGTATCGAGGACTAACTTAC 11 51 1 CCGTATCAGG 0.293463 -91 CTGACTACGCGCTGCTCCGGGGAAACGTATC 15 49 1 GCTGCTCGGG 0.810649 -146 CCGGCCAGCCGCGGCACGGGATGCTGCCGTC 15 122 0 GCGGCACGGA 0.698457 -73 CGGGACACGGGGACTAGAACAT 18 2 1 GGGACACGGG 0.916047 -162 TCGCCGCTGCGCGTCTGGGGGTACCCCCACT 18 55 0 GCGTCTGGGG 0.682275 -109 GGCGGTCGAGCCTATCCGGGCGACGATGCG 20 10 1 GCCTATCGGG 0.889139 -147 CGTACCGGCACCCTAACAGGGCCCCCGGCCA 20 73 0 CCCTAACGGG 0.784683 -84 GTTTCGCTACGGGACGCCGGGTGCTTTGCCG 22 30 0 GGGACGCGGG 0.77514 -168 CCGGGCCGCTTCGACTCAGGAAGCGATCTCC 22 88 1 TCGACTCGGA 0.613862 -110 GATCTCCGTCGCGAAACAGGGCAGTGCTAAC 22 112 1 GCGAAACGGG 0.948857 -86 TACCCCCTGGGCTTAGCTGGGCACTGGGGCC 24 18 1 GCTTAGCGGG 0.556704 -283 GAAAGAATCTGCTTCTCCGGGTCGGTCAGAT 26 239 1 GCTTCTCGGG 0.910118 -62 GTGGGCTCCTTAACAGGGGGGCTGGTAG 30 8 1 CCTTAACGGG 0.696423 -91 GGGCAGCCTGTGCTAACAGGGGAGGGTTT 30 80 1 TGCTAACGGG 0.298099 -19 GAGTTTGAAGGCGACTCTGGGCGTCGACCCA 31 262 0 GCGACTCGGG 0.979279 -39 GCCGGGCTCTCCGGATCTGGGGCAGGTCGGC 34 150 1 CCGGATCGGG 0.851371 -151 CGTCCGTGCGGCCTCTCTGGATTATTGAGCT 34 278 0 GCCTCTCGGA 0.703104 -23 TCGATCACCGTAACAGGACCGTTAGACT 35 29 0 CCGTAACGGA 0.610972 -18 TTCCGCCCGCGCGAATCGGGGTCGACGGCTG 37 48 0 GCGAATCGGG 0.95914 -167 GCCGCGGCCAGCATCTCCGGGTTCACCAATG 39 74 0 GCATCTCGGG 0.814985 -163 CACGTCTTTATCGACACCGGGTGCTGCCAGA 39 187 1 TCGACACGGG 0.895471 -50 CGCATCGTCGTCGACACGGGGCATT 42 5 0 TCGACACGGG 0.895473 -60 ATGCGCCCTTCGCTCACCGGGGCATTAGATG 43 200 0 CGCTCACGGG 0.682705 -101 TCGATGGGGTGGGAATCCGGGAATTCGGTAC 43 236 0 GGGAATCGGG 0.872729 -65 ******* *** Masking position 10 Map Score: 27.8829 Number of sites scoring better than the average of aligned sites = 5159 Number in coding regions = 4635 Number in noncoding regions = 524 Number of orfs with sites within 600 bp upstream = 392 Fraction of orfs with sites within 600 bp upstream = 0.0629618 Motif number 10 CCGACCGTGCCTGACCGAAGGTGTAGAGCGG 1 31 1 CTGACCGAGG 0.938655 -270 GGTTGCGCTGCTGATCGTCGGATAGCGCTGG 2 22 0 CTGATCGTGG 0.978396 -80 ATCCCCCGAACTGATCAACGGAGAAAACA 11 123 1 CTGATCAAGG 0.849804 -19 GGTAAACCCACGGATCGACGTCCTGCGGATC 13 14 0 CGGATCGAGT 0.557002 -261 TTGACACCGCCTGGACGACGGTAGGGCGTCA 13 217 1 CTGGACGAGG 0.739037 -58 GGGCCTACTACTGATCGTTGAGCGGATGTTC 23 51 0 CTGATCGTGA 0.900589 -136 AAACGAATGGCTGGTCGAAGAG 25 181 1 CTGGTCGAGA 0.841222 -12 CGCGGATGCCCTGATCGTCGTTGATTTCCTC 26 46 1 CTGATCGTGT 0.86343 -255 TCTACGACGACCGGTCGTAGACTGACCGGAC 27 34 0 CCGGTCGTGA 0.677894 -101 GCTCCCCCGGCTGCTCGGCGGCGGGATCTAC 27 60 0 CTGCTCGGGG 0.829124 -75 GACTCCTCGATCGATCGTCGGTCGGCGCAGG 28 236 0 TCGATCGTGG 0.690971 -28 GTCGGCCGCTTCGATCGATGGCCGTAGCCGC 34 175 1 TCGATCGAGG 0.722524 -126 TGCCGCCAGCCTGATCGAGGGCTAAGATGCC 37 143 1 CTGATCGAGG 0.981383 -72 CCACCTCTTTCTGCCCGTCGGGTGTGAGCTT 40 39 0 CTGCCCGTGG 0.82047 -35 GGCTTGGTACCTGATCACGGGAGACATCTGG 43 106 0 CTGATCACGG 0.600462 -195 ******** ** Masking position 6 Map Score: 9.20875 Number of sites scoring better than the average of aligned sites = 2781 Number in coding regions = 2602 Number in noncoding regions = 179 Number of orfs with sites within 600 bp upstream = 166 Fraction of orfs with sites within 600 bp upstream = 0.0266624 Motif number 11 CCGGATGCCCATTTGGCCGGGCAGCCGATT 1 225 1 ATTTGGCCGG 0.447197 -76 CCCAGAGTTGGCCAGCGCTATCCGA 2 6 1 AGTTGGCCAG 0.79644 -96 CTACGCTTCGGGGCCGCCGGTTAGGTCTCG 3 12 0 GGGCCGCCGG 0.663039 -77 GCGACCATACAATTGGCCGGCGT 7 4 0 AATTGGCCGG 0.795777 -40 CTGGCCTCATACTCGTCCGGTGTTTCGTG 8 10 0 ACTCGTCCGG 0.578087 -21 ATCGTGTGGGGGTCGGGCGCGCCAATACAC 11 27 1 GGTCGGGCGC 0.661894 -115 CAGTTCGGGGGATCGGCCGTTGAGGGCCAT 11 106 0 GATCGGCCGT 0.818922 -36 CCCGTGCCGCGGCTGGCCGGACGTGATCCG 15 133 1 GGCTGGCCGG 0.677155 -62 GCCCGGATAGGCTCGACCGCC 20 2 0 GCTCGACCGC 0.481603 -155 CCAACCAACAGGTTGGCCGGGGGCCCTGTT 20 60 1 GGTTGGCCGG 0.966012 -97 GACGCCGGGTGCTTTGCCGGCCCCAGGAGG 22 19 0 GCTTTGCCGG 0.701256 -179 AACGATCAGTAGTAGGCCCGGGTTCCCGGC 23 63 1 AGTAGGCCCG 0.142848 -124 CTAGATCGTGGCTCGCCCAGCGGTGCCCGC 23 132 0 GCTCGCCCAG 0.797681 -55 CTTTGCCAGCGATTCGCCAGAGAGACCGGG 25 20 0 GATTCGCCAG 0.534175 -173 AAAGGCTAACGCTTTGCCAGCGATTCGCCA 25 31 0 GCTTTGCCAG 0.472167 -162 GCGGAGCCCGGCACCGCCAGCAGTGCCTCG 26 18 1 GCACCGCCAG 0.535921 -283 GCGTGGACTTGATCGGTCGTCATCACACAA 26 195 1 GATCGGTCGT 0.196453 -106 TGCTTCTCCGGGTCGGTCAGATCGGCTTTC 26 248 1 GGTCGGTCAG 0.663205 -53 TCCCCCGGCTGCTCGGCGGCGGGATCTACG 27 59 0 GCTCGGCGGC 0.552655 -76 TCGACGCCGCGCTCCCCCGGCTGCTCGGCG 27 71 0 GCTCCCCCGG 0.74267 -64 ACATCGGTGCAGTCGGCCGTCCTTGCTACG 28 58 0 AGTCGGCCGT 0.811477 -206 GCGACCGTGTGATAGGCCAGAGGTGGACCT 28 209 1 GATAGGCCAG 0.504945 -55 TAGCTAGGCTACTCGGCCGCCAGCGCACGG 29 31 0 ACTCGGCCGC 0.916294 -22 ATCTGGGGCAGGTCGGCCGCTTCGATCGAT 34 164 1 GGTCGGCCGC 0.959036 -137 CGACGGTAGCACTCGGCCAGCCGTCGACCC 37 31 1 ACTCGGCCAG 0.944543 -184 TAAATGCCAGACTCCGCCGGCGGGCCGTTG 37 91 0 ACTCCGCCGG 0.925747 -124 TCAACGAGGAGGACGGCCATGTGGTTTGCA 39 46 1 GGACGGCCAT 0.285049 -191 GCGGCGACAGACTTGGGCGGCATCAGGTCA 39 103 1 ACTTGGGCGG 0.526351 -134 GAATATGCGCAATCCGCCAGAATGCCCAGA 43 51 1 AATCCGCCAG 0.582128 -250 CCAAGCGCTTGCTCGGCCAGCTGCGACCTC 43 265 0 GCTCGGCCAG 0.979232 -36 ********** Masking position 8 Map Score: 20.5267 Number of sites scoring better than the average of aligned sites = 18018 Number in coding regions = 16871 Number in noncoding regions = 1147 Number of orfs with sites within 600 bp upstream = 761 Fraction of orfs with sites within 600 bp upstream = 0.122229 Motif number 12 GCCATGATGCGACGCCGCAGACTCTCAGGT 1 63 1 GACGCCGCAG 0.760869 -238 CCTAACCGGCGGCCCCGAAGCGTAGTGATG 3 17 1 GGCCCCGAAG 0.949751 -72 ATACTGCCCCGGCCCGGTAGCCTCGCGGC 12 10 0 GGCCCGGTAG 0.697358 -26 TTTGCGAAGTCGCCCAAAAACTGAACCGTT 13 79 0 CGCCCAAAAA 0.393085 -196 CTGCCGAGCAGACGCAAAAGCACCCTTTTG 14 12 1 GACGCAAAAG 0.887405 -70 ACCCTTTTGCGGCGCAAAAGTGGCGCTTTT 14 33 1 GGCGCAAAAG 0.964411 -49 TGCGCGAGCAGACGCAAAAGCGCCACTTTT 14 48 0 GACGCAAAAG 0.887405 -34 GGCGACGATGCGCGCCGCAGCGATACCTTG 20 29 1 CGCGCCGCAG 0.895388 -128 CTCCTCAGCGCACCCGAAAGCCGATCTGAC 26 263 0 CACCCGAAAG 0.768139 -38 GCAGATGGCAGGCGCCAAAGCGCATTCGAC 27 96 0 GGCGCCAAAG 0.962039 -39 GTATCACACGCGCGCAGATGGCAGGCGCCA 27 109 0 CGCGCAGATG 0.744708 -26 AGACGCCACACGCGCGAAAGGTCTACCGCC 31 60 0 CGCGCGAAAG 0.960876 -241 GGGCCGAACCGGCCCAGAACGTTCTCACTC 34 13 0 GGCCCAGAAC 0.840989 -288 TGGTGCGGTACGCGCAGAACCGCGTGTGCC 34 49 1 CGCGCAGAAC 0.899209 -252 TGCGCGTGACGACGCGAAACAGCTCAATAA 34 258 1 GACGCGAAAC 0.704943 -43 GCTATGACGACGCGCGGAAGAATATGCGCA 43 32 1 CGCGCGGAAG 0.975304 -269 ********** Masking position 5 Map Score: 13.3199 Number of sites scoring better than the average of aligned sites = 3335 Number in coding regions = 3073 Number in noncoding regions = 262 Number of orfs with sites within 600 bp upstream = 233 Fraction of orfs with sites within 600 bp upstream = 0.0374237 Motif number 13 GGCATGCCATGCTACCTAAGTAAGTT 3 73 0 GCCAGCTACC 0.988899 -16 CGGTCATGGCGTCACCCTACCCAAGCCGAAC 9 35 0 GTCACCTACC 0.843758 -64 CCTACGGCCCGCTAGGCTATCGACCA 10 6 0 GCTAGCTATC 0.907415 -30 GCCGTTGAGGGCCATACTACCCACTGTTCTT 11 90 0 GCCAACTACC 0.886163 -52 GCCGCGAGGCTACCGGGCCGGGGC 12 4 1 GCGAGCTACC 0.969093 -32 ACAGGGCAGTGCTAACCTACCGGTTGGTTGG 22 127 1 GCTACCTACC 0.972421 -71 CTTGGGATCGGCGACGCTACCAACCAACCGG 22 146 0 GCGAGCTACC 0.969239 -52 GATAGCTAGGCTACTCGGCCGCCAG 29 38 0 GCTAGCTACT 0.784803 -15 GAACCACGCACCTGCGCTACCAGCCCCCCTG 30 24 0 CCTGGCTACC 0.696029 -75 AATTTTAGTGGTTACCCTATCTTCGAACCAC 30 48 0 GTTACCTATC 0.393654 -51 GCGGTGTCAAGCCACGCCACCATGCTGACCT 31 224 0 GCCAGCCACC 0.97414 -77 TAAGCTACCAGCCAGGTCACCGCAGAGGACG 39 154 0 GCCAGTCACC 0.696327 -83 TAAAGACGTGCCTAAGCTACCAGCCAGGTCA 39 166 0 CCTAGCTACC 0.944055 -71 TGTGCTAGCGTACCAAGCAAGTGC 41 4 1 GCTACGTACC 0.755934 -51 TTCCCGGATTCCCACCCCATCGAGGTCGCAG 43 244 1 CCCACCCATC 0.480942 -57 **** ****** Masking position 9 Map Score: 12.6865 Number of sites scoring better than the average of aligned sites = 923 Number in coding regions = 814 Number in noncoding regions = 109 Number of orfs with sites within 600 bp upstream = 126 Fraction of orfs with sites within 600 bp upstream = 0.0202377 Motif number 14 GGCGCAACCAGCCCGGCGCGATCCGGGCTC 1 112 1 GCCCGGCGCG 0.88964 -189 CAGCTCAGTCCGGTCTGTTCGGCGTAC 1 284 0 GTCCGGTCTG 0.545625 -17 CACCGCCGCTGTGCGGCGAGGAGATCCGAA 2 79 1 GTGCGGCGAG 0.943684 -23 TGGTCGATAGCCTAGCGGGCCGTAGGGTG 10 10 1 GCCTAGCGGG 0.808166 -26 GATTTGTCGTTACTGGCGGGTAGCTTCTGA 13 49 1 TACTGGCGGG 0.0758225 -226 CCCTACCGTCGTCCAGGCGGTGTCAACGGC 13 213 0 GTCCAGGCGG 0.50003 -62 CCGGAGCAGCGCGTAGTCAGCGCTCGTGAA 15 39 0 GCGTAGTCAG 0.259064 -156 CTCGGATCACGTCCGGCCAGCCGCGGCACG 15 135 0 GTCCGGCCAG 0.936015 -60 AGTGAGACCGATCTGGTGAGACCCACACCC 15 164 0 ATCTGGTGAG 0.431933 -31 AACCCAAGTCTAGTGAGACCGATCTGG 15 178 0 GTCTAGTGAG 0.61881 -17 TCAACGGTAGGTGCCGCGGGGCTTGAAG 16 9 0 GTGCCGCGGG 0.571883 -23 GCTGACGACGATGCAGTGGGGGTACCCCCA 18 41 1 ATGCAGTGGG 0.450136 -123 GAGTGTGGTGAGAGGAAGCAAC 19 3 1 GTGTGGTGAG 0.687502 -21 AGTCGAAGCGGCCCGGTCTGCGCCGTCCAT 22 74 0 GCCCGGTCTG 0.559936 -124 AGGCCCGGGTTCCCGGCCAGCGTTGTCATC 23 76 1 TCCCGGCCAG 0.638426 -111 ATCGTGGCTCGCCCAGCGGTGCCCGCGGGG 23 128 0 GCCCAGCGGT 0.310298 -59 GCCCAGCTAAGCCCAGGGGGTACCCCCGG 24 10 0 GCCCAGGGGG 0.715558 -291 GCGCCAGTGTATCCAGCGAGCCGCTCCCGG 24 243 0 ATCCAGCGAG 0.673423 -58 CGGCTTTCGGGTGCGCTGAGGAGGTAGTCA 26 270 1 GTGCGCTGAG 0.270365 -31 AGCCCGGCAGGTCCGGTCAGTCTACGACCG 27 24 1 GTCCGGTCAG 0.894499 -111 CAACAGCAAGTCCCGGTGGGCGGAGGTGCG 28 11 0 TCCCGGTGGG 0.775205 -253 GGGGACATCGGTGCAGTCGGCCGTCCTTGC 28 62 0 GTGCAGTCGG 0.674032 -202 CACATCCAGGGCGCGGCGAGTTGGTGGCCC 28 117 0 GCGCGGCGAG 0.946683 -147 GGTTTTGTACGTGTGTCGAGGATCACACAA 31 13 1 GTGTGTCGAG 0.146979 -288 GGGCATTCAGCGTAGCGAGTACCGTCAAG 32 10 1 GCGTAGCGAG 0.588829 -24 GCGTGTGCCGTTCCAGCGAGTCACTATGCA 34 70 1 TTCCAGCGAG 0.5848 -231 CCTGCCCCAGATCCGGAGAGCCCGGCAGCC 34 146 0 ATCCGGAGAG 0.223125 -155 GTCACGCGCAATCCAGCGGGTTCGCCGAAC 34 238 0 ATCCAGCGGG 0.74536 -63 AACGCGTGCTGTCCGGCGGG 37 1 0 GTCCGGCGGG 0.980117 -214 CTGGGTTTTGGCCCGGTCCGGGCTGGATGT 37 182 1 GCCCGGTCCG 0.663092 -33 ACCTCTTTCTGCCCGTCGGGTGTGAGCTTG 40 38 0 GCCCGTCGGG 0.703352 -36 GTCGACGACGATGCGGTGGGGGTACCACTC 42 21 1 ATGCGGTGGG 0.696893 -44 GCATCTAATGCCCCGGTGAGCGAAGGGCGC 43 199 1 CCCCGGTGAG 0.522531 -102 TTGGTTGATAGTCTGGTCGG 43 291 1 GTCTGGTCGG 0.731636 -10 ********** Masking position 10 Map Score: 25.8185 Number of sites scoring better than the average of aligned sites = 19665 Number in coding regions = 18183 Number in noncoding regions = 1482 Number of orfs with sites within 600 bp upstream = 926 Fraction of orfs with sites within 600 bp upstream = 0.148731 Motif number 15 GGCCAACTCCGGTTTCGACGAGCCCGGATC 1 131 0 GGTTTCGACG 0.275253 -170 GGCCAAATGGGCATCCGGCGGCCGCGACAT 1 213 0 GCATCCGGCG 0.979917 -88 CGAGCGCATCCGACTGACCTTATAT 5 6 1 GCATCCGACT 0.701732 -89 TTCTCGTTTCGCGTTCGGCTTGGGTAGGGT 9 23 1 GCGTTCGGCT 0.649754 -76 GTGTATTGGCGCGCCCGACCCCCACACGAT 11 27 0 GCGCCCGACC 0.812452 -115 GTCTGCTCGCGCATTTGAGGAGGAACA 14 65 1 GCATTTGAGG 0.164352 -17 GGCCGGCAAAGCACCCGGCGTCCCGTAGCG 22 27 1 GCACCCGGCG 0.985053 -171 CATCAAGAGAGGATCCGACG 23 1 0 GGATCCGACG 0.874414 -186 CGTGACTGCTGCACCTGACGCTCGCACTAC 24 274 1 GCACCTGACG 0.88544 -27 GAGGTAGCCAGCATGTGACGGGCGTGGACT 26 174 1 GCATGTGACG 0.763698 -127 GCGCCAAAGCGCATTCGACGCCGCGCTCCC 27 85 0 GCATTCGACG 0.943669 -50 CACACATCCAGGGCGCGGCGAGTTGGTGGC 28 119 0 GGGCGCGGCG 0.883101 -145 CCTGGGTTCCGCACCCGGTGCGCGACCGTG 28 188 1 GCACCCGGTG 0.829412 -76 GACCTTTCGCGCGTGTGGCGTCTGGAAAAA 31 67 1 GCGTGTGGCG 0.821372 -234 GGGCATTCAGCGTAGCGAGTAC 32 3 1 GCATTCAGCG 0.506089 -31 GAAGCTCTCGGGGTTCGGCGAACCCGCTGG 34 226 1 GGGTTCGGCG 0.845921 -75 CCGCTGGATTGCGCGTGACGACGCGAAACA 34 249 1 GCGCGTGACG 0.793693 -52 CGGACAGCACGCGTTCGACGGTAGCACTCG 37 16 1 GCGTTCGACG 0.936568 -199 TTCGACGGTAGCACTCGGCCAGCCGTCGAC 37 29 1 GCACTCGGCC 0.814719 -186 GGAGCGTATCGCCCGCGGCGGCACCGCGTC 39 11 0 GCCCGCGGCG 0.844385 -226 TTCTCTGGCAGCACCCGGTGTCGATAAAGA 39 191 0 GCACCCGGTG 0.829412 -46 TGACAAGCTCACACCCGACGGGCAGAAAGA 40 35 1 ACACCCGACG 0.607359 -39 ********** Masking position 7 Map Score: 23.4547 Number of sites scoring better than the average of aligned sites = 10778 Number in coding regions = 10020 Number in noncoding regions = 758 Number of orfs with sites within 600 bp upstream = 551 Fraction of orfs with sites within 600 bp upstream = 0.0884998