AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00310_mtub_reg_300.orf -o00310_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: sppA 32 sppA aldB 26 aldB Input sequences: #1 glyA2 300 glyA2 #2 Rv0144 101 hypothetical protein Rv0144 #3 Rv0145 88 hypothetical protein Rv0145 #4 Rv0146 42 hypothetical protein Rv0146 #5 Rv0147 94 hypothetical protein Rv0147 #6 Rv0218 92 hypothetical protein Rv0218 #7 Rv0221 43 hypothetical protein Rv0221 #8 echA1 30 echA1 #9 Rv0223c 98 hypothetical protein Rv0223c #10 Rv0224c 35 hypothetical protein Rv0224c #11 fadA2 141 fadA2 #12 fadE7 35 fadE7 #13 Rv0466 151 hypothetical protein Rv0466 #14 aceA 274 aceA #15 fadB2 81 fadB2 #16 end 194 end #17 lpqP 31 lpqP #18 fadE8 59 fadE8 #19 rplN 300 rplN #20 rpsH 163 rpsH #21 rplF 23 rplF #22 fadA 156 fadA #23 echA6 26 echA6 #24 Rv0976c 197 hypothetical protein Rv0976c #25 echA9 186 echA9 #26 glyA 300 glyA #27 sucA 192 sucA #28 Rv1249c 196 hypothetical protein Rv1249c #29 fadA4 300 fadA4 #30 blaC 134 blaC #31 sucB 263 sucB #32 lipB 52 lipB #33 mbtB 98 mbtB #34 echA14 300 echA14 #35 pepQ 33 pepQ #36 echA15 52 echA15 #37 gpsI 300 gpsI #38 echA16 46 echA16 #39 serB2 37 serB2 #40 ctaD 214 ctaD #41 Rv3292 30 hypothetical protein Rv3292 #42 Rv3371 191 hypothetical protein Rv3371 #43 otsB2 41 otsB2 #44 echA18 236 echA18 #45 echA19 73 echA19 #46 echA20 54 echA20 #47 fadA6 64 fadA6 #48 Rv3557c 300 hypothetical protein Rv3557c Motif number 1 AAACCTGAGAGTCTGCGGCGTCGCATCATG 1 65 0 GTCTGCGGCG 0.969126 -236 AGGACAGAGCGGGGAGGGCGCAACCAGCCC 1 96 1 GGGGAGGGCG 0.873944 -205 GAGCCCGGATCGCGCCGGGCTGGTTGCGCC 1 112 0 CGCGCCGGGC 0.916559 -189 TCAGACAAGGGCCAACTCCGGTTTCGACGA 1 140 0 GCCAACTCCG 0.593469 -161 ACATCGTTTCGGCCACGGCGAGGTCGCCAA 1 187 0 GGCCACGGCG 0.682425 -114 CCGAAACGATGTCGCGGCCGCCGGATGCCC 1 205 1 GTCGCGGCCG 0.934604 -96 GAGCAATCGGCTGCCCGGCCAAATGGGCAT 1 229 0 CTGCCCGGCC 0.815086 -72 GTTCGGCGTACTCGGGGGCGGTCAAGGGTG 1 265 0 CTCGGGGGCG 0.920863 -36 GACGTACGCGATCACCGCCGCTGTGCGGCG 2 67 1 ATCACCGCCG 0.854636 -35 ATCACCGCCGCTGTGCGGCGAGGAGATCCG 2 77 1 CTGTGCGGCG 0.887253 -25 ACTACGCTTCGGGGCCGCCGGTTAGGTCTC 3 13 0 GGGGCCGCCG 0.969804 -76 CCTATGAGTAGGGGGCTGCG 7 34 1 GGGGGCTGCG 0.833896 -10 GCTCGGCATCGTCGCCGGCGGTCATGGCGT 9 54 0 GTCGCCGGCG 0.984142 -45 AGCGATGAGGAGGAGCGGCGCAT 9 86 1 AGGAGCGGCG 0.838226 -13 CTGGCACACCCTACGGCCCGCTAGGCTA 10 18 0 CCCTACGGCC 0.768131 -18 TATCGTGTGGGGGTCGGGCGCGCCAATACA 11 26 1 GGGTCGGGCG 0.88954 -116 TAGTATGGCCCTCAACGGCCGATCCCCCGA 11 102 1 CTCAACGGCC 0.855371 -40 ACTCAATACTGCCCCGGCCCGGTAGCCTCG 12 15 0 GCCCCGGCCC 0.510464 -21 GAGTTAGCAAGCGTGCTGCGATTGGTGTTT 13 51 1 GCGTGCTGCG 0.528467 -101 TTGGTGTTTCCGCCACGGCGTTGGCATGAT 13 72 1 CGCCACGGCG 0.59773 -80 TGCGAATTTCGGCAACGGCCTGCGGACTTT 14 117 0 GGCAACGGCC 0.839191 -158 TCCAGGCGGTGTCAACGGCGCAGCTTCACT 14 202 0 GTCAACGGCG 0.949341 -73 CCCTACCGTCGTCCAGGCGGTGTCAACGGC 14 213 0 GTCCAGGCGG 0.628134 -62 GCCTGGACGACGGTAGGGCGTCAGCGTTTT 14 225 1 CGGTAGGGCG 0.746176 -50 GTGCTTTTGCGTCTGCTCGGCAGA 15 5 0 GTCTGCTCGG 0.508325 -77 GCTGACTACGCGCTGCTCCGGGGAAACGTA 16 48 1 CGCTGCTCCG 0.822784 -147 CGTATTCGTGGGCCCCGGCGCATAAAGTGT 16 92 0 GGCCCCGGCG 0.5158 -103 CATCCCGTGCCGCGGCTGGCCGGACGTGAT 16 130 1 CGCGGCTGGC 0.625329 -65 CTTCAAGCCCCGCGGCACCTACCGT 17 6 1 AGCCCCGCGG 0.853561 -26 AAAGCTTATGCGCGCCGGCCGAGGTCTGCT 19 175 0 CGCGCCGGCC 0.901503 -126 CCGACGGGCACGCGGGGCCGACCAAGCAAA 19 202 0 CGCGGGGCCG 0.884425 -99 GGTCTTTGTCGCCGACGGGCACGCGGGGCC 19 213 0 GCCGACGGGC 0.700564 -88 CTGCATCGTCGTCAGCGCGGTCATATGTTC 20 27 0 GTCAGCGCGG 0.899815 -137 CCCCCAGACGCGCAGCGGCGAGGGGGCCGC 20 65 1 CGCAGCGGCG 0.512557 -99 CTGCATCGTCGTCAGCGCGGTCATCGAGCG 20 114 0 GTCAGCGCGG 0.899815 -50 GGCAAGGTATCGCTGCGGCGCGCATCGTCG 22 31 0 CGCTGCGGCG 0.829752 -126 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 22 64 0 GCCCCCGGCC 0.524162 -93 CGTTTCGCTACGGGACGCCGGGTGCTTTGC 24 32 0 CGGGACGCCG 0.924325 -166 AAGCGGCCCGGTCTGCGCCGTCCATTGGAG 24 69 0 GTCTGCGCCG 0.959515 -129 GCCCAGCGGTGCCCGCGGGGGCTAAGGTTT 25 118 0 GCCCGCGGGG 0.530539 -69 CTTCAGGGGAGGCGAGGCCC 25 177 1 GGCGAGGCCC 0.868679 -10 GCCCAGCTAAGCCCAGGGGGTACCCCCGG 26 10 0 GCCCAGGGGG 0.58005 -291 TGGGCACTGGGGCCAGGGCGCGGTGTTTCG 26 35 1 GGCCAGGGCG 0.646713 -266 TCACGAGTAGCGGTGGGCGGTTTGTGCCCG 26 124 0 CGGTGGGCGG 0.579913 -177 TGACCTACGTGGCAGCTGGGGCACTAGTGG 26 151 1 GGCAGCTGGG 0.545599 -150 GTATCCAGCGAGCCGCTCCCGGGCTGATTA 26 235 0 AGCCGCTCCC 0.491277 -66 AGGTGCAGCAGTCACGGGCGCCAGTGTATC 26 260 0 GTCACGGGCG 0.930433 -41 AGAGAGACCGGGCAACGCGCG 27 2 0 GGCAACGCGC 0.819609 -191 ACTGCCAGCAGGCGCCGCGCAATGCGCTTG 27 81 1 GGCGCCGCGC 0.93873 -112 AACTTATGTTGGCCACGGCCGCTGTTCGCC 27 138 0 GGCCACGGCC 0.636163 -55 GTGGCATTGGGTCACGGGCGTCACGGCATG 28 38 1 GTCACGGGCG 0.930433 -159 CGTCACCAATGTCCACGCCGCATTATTCCG 28 86 1 GTCCACGCCG 0.948279 -111 GTGTTTCGGTAGCGGCGCGGTTCACCGCTC 28 120 0 AGCGGCGCGG 0.84048 -77 CTTCTCTCCTGCGAATGGCGTCC 28 184 0 CTCTCCTGCG 0.794508 -13 CGGTGCCGGGCTCCGCGGCGCAA 29 4 0 CTCCGCGGCG 0.817194 -297 AGGCACTGCTGGCGGTGCCGGGCTCCGCGG 29 16 0 GGCGGTGCCG 0.647085 -285 GACCGATCAAGTCCACGCCCGTCACATGCT 29 183 0 GTCCACGCCC 0.890103 -118 ACCATAGCCCGGCAGGTCCGGTCAGTCTAC 30 19 1 GGCAGGTCCG 0.501022 -116 CCCCCGGCTGCTCGGCGGCGGGATCTACGA 30 58 0 CTCGGCGGCG 0.974095 -77 GAGCAGCCGGGGGAGCGCGGCGTCGAATGC 30 75 1 GGGAGCGCGG 0.684773 -60 AATGCGCTTTGGCGCCTGCCATCTGCGCGC 30 100 1 GGCGCCTGCC 0.886647 -35 CGCACCTCCGCCCACCGGGA 31 1 1 CGCACCTCCG 0.598199 -263 AACCGTAGCAAGGACGGCCGACTGCACCGA 31 55 1 AGGACGGCCG 0.623068 -209 CTGCACCGATGTCCCCGCCGAGGTGTCGGC 31 76 1 GTCCCCGCCG 0.968343 -188 GCGAGTTGGTGGCCCCGGCGGCCGTTGCCG 31 102 0 GGCCCCGGCG 0.5158 -162 CACACATCCAGGGCGCGGCGAGTTGGTGGC 31 119 0 GGGCGCGGCG 0.502007 -145 GGATGTGTGTCGCTCCGGGCGCAGTGACAG 31 140 1 CGCTCCGGGC 0.880127 -124 CCAGAGGTGGACCTGCGCCGACCGACGATC 31 225 1 ACCTGCGCCG 0.738765 -39 CAGCCGTGCGCTGGCGGCCGAGTAGCCTAG 32 28 1 CTGGCGGCCG 0.781134 -25 CTTCGAACCACGCACCTGCGCTACCAGCCC 33 29 0 CGCACCTGCG 0.536305 -70 GGAAAAATTCCTCGACGGCCACCGTTAGAT 34 90 1 CTCGACGGCC 0.886487 -211 GTTAGATAAACTGACCTGCGCATCGCCTCC 34 113 1 CTGACCTGCG 0.630235 -188 TGACCTGCGCATCGCCTCCGTAGCTCAGGT 34 124 1 ATCGCCTCCG 0.530023 -177 AGGTGGATAGAGCAAGGGCCTTCTAATCCC 34 150 1 AGCAAGGGCC 0.526676 -151 CGTTCGAGTCGTGCCGGGGGCACTGTGGAA 34 189 1 GTGCCGGGGG 0.658677 -112 CTCGTTATGGGTCGACGCCCAGAGTCGCCT 34 255 1 GTCGACGCCC 0.890914 -46 CGGGCACCTCCGTGGTTTGAGT 34 289 0 GGCACCTCCG 0.696549 -12 ACCGCCACCCCGCACCTGCGTAACATCGAC 36 30 1 CGCACCTGCG 0.536305 -23 GCAAATGGTGCGGTACGCGCAGAACCGCGT 37 44 1 CGGTACGCGC 0.489664 -257 CCAAGGGAGCACCCCCGGCCTGTATCGGGC 37 103 1 ACCCCCGGCC 0.741603 -198 GCCACTACCGAGGACCGCCCGATACAGGCC 37 119 0 AGGACCGCCC 0.703107 -182 CCGGATCTGGGGCAGGTCGGCCGCTTCGAT 37 160 1 GGCAGGTCGG 0.410865 -141 GTCTGAATGCGGCTACGGCCATCGATCGAA 37 184 0 GGCTACGGCC 0.942678 -117 GACGTCCGTGCGGCCTCTCTGGATT 37 286 0 CCGTGCGGCC 0.67149 -15 GGGGCCCAACCGGTACGGCCCCA 39 4 0 CGGTACGGCC 0.807624 -34 CGAACGCGTGCTGTCCGGCGGG 40 3 0 CTGTCCGGCG 0.901916 -212 GACCCCGATTCGCGCGGGCGGAAAGCGTTG 40 56 1 CGCGCGGGCG 0.905289 -159 TGGTCTGCAACGGCCCGCCGGCGGAGTCTG 40 84 1 CGGCCCGCCG 0.519173 -131 ACATCCAGCCCGGACCGGGCCAAAACCCAG 40 182 0 CGGACCGGGC 0.538457 -33 CGTTGCGATAGTCTCCGGCC 41 1 0 GTCTCCGGCC 0.941828 -30 CTATCGCAACGGCAGTGCCGC 41 20 1 GGCAGTGCCG 0.430023 -11 CGGGCCGCCGAGCTGGGCGGAA 42 3 0 AGCTGGGCGG 0.487754 -189 GGTGGAGCAACGGGCCGCCGAGCTGGGCGG 42 13 0 CGGGCCGCCG 0.95192 -179 GCTTCCGGTGCGGTCCGGCGGACACTTATA 42 139 1 CGGTCCGGCG 0.915389 -53 TCTCACGGGGGTCAACGCCGACGGAGATGG 43 13 0 GTCAACGCCG 0.933889 -29 GGAGCGTATCGCCCGCGGCGGCACCGCGTC 44 11 0 GCCCGCGGCG 0.510651 -226 CGGAGATGCTGGCCGCGGCGGCGACAGACT 44 86 1 GGCCGCGGCG 0.50366 -151 CAGGTCAGGGATCAGCGCCGCCTATGCGCG 44 126 1 ATCAGCGCCG 0.834506 -111 TATCGACACCGGGTGCTGCCAGAGAACTCG 44 195 1 GGGTGCTGCC 0.610262 -42 CAAGCTCACACCCGACGGGCAGAAAGAGGT 45 38 1 CCCGACGGGC 0.626712 -36 GGTTGCCACGGCCGCCACCTCTTT 45 60 0 GCCACGGCCG 0.744998 -14 ACGCTAGGCACTCTCCGCCGATACCCCAGA 48 81 1 CTCTCCGCCG 0.952048 -220 TTGCCCGCACAGCCCGGCCCAGGTGCAGGA 48 143 0 AGCCCGGCCC 0.704344 -158 GCGCCCTTCGCTCACCGGGGCATTAGATGC 48 199 0 CTCACCGGGG 0.907771 -102 CGCTTGCTCGGCCAGCTGCGACCTCGATGG 48 260 0 GCCAGCTGCG 0.531628 -41 ********** Masking position 7 Map Score: 149.672 Number of sites scoring better than the average of aligned sites = 135024 Number in coding regions = 127239 Number in noncoding regions = 7785 Number of orfs with sites within 600 bp upstream = 1660 Fraction of orfs with sites within 600 bp upstream = 0.266624 Motif number 2 ACCAGCCCGGCGCGATCCGGGCTCGTCGAA 1 118 1 CGCGATCCGG 0.551589 -183 GTCGCGGCCGCCGGATGCCCATTTGGCCGG 1 215 1 CCGGATGCCC 0.96728 -86 CCCGGAGCAATCGGCTGCCCGGCCAAATGG 1 233 0 TCGGCTGCCC 0.728093 -68 TTGACCGCCCCCGAGTACGCCGAACAGACC 1 270 1 CCGAGTACGC 0.439653 -31 CTCTGGTTCTCGTGATGCCGGTG 4 4 0 CGTGATGCCG 0.493559 -39 ATAAGGTCAGTCGGATGCGCTCG 5 4 0 TCGGATGCGC 0.748031 -91 ATGGCTTTGGCAGGCTGCGGTTAGTCGAAC 6 52 1 CAGGCTGCGG 0.730248 -41 AGGCCACCATCCCGATCCTCGTTCGACTAA 6 72 0 CCCGATCCTC 0.581104 -21 GACCGCCGGCGACGATGCCGAGCGCAGCGA 9 61 1 GACGATGCCG 0.766366 -38 ATGCGCCGCTCCTCCTCATCGCTG 9 85 0 GCCGCTCCTC 0.571823 -14 CACCCTACGGCCCGCTAGGCTATCGACCA 10 10 0 CCCGCTAGGC 0.663359 -26 CCGACCCCCACACGATACGGAAGGCAGCTG 11 13 0 CACGATACGG 0.453134 -129 CGTATCGTGTGGGGGTCGGGCGCGCCAATA 11 24 1 GGGGGTCGGG 0.424564 -118 GCCCTCAACGGCCGATCCCCCGAACTGATC 11 109 1 GCCGATCCCC 0.655574 -33 ACTGCCCCGGCCCGGTAGCCTCGCGGC 12 8 0 CCCGGTAGCC 0.830148 -28 CTTCACAACACCCGGTACGCTCGGTTGG 13 9 0 CCCGGTACGC 0.963867 -143 ACCCTTGAGTCCCGGTGCGAATCATGCCAA 13 92 0 CCCGGTGCGA 0.682054 -60 CCGGATCCGCAGGACGTCGA 14 1 1 CCGGATCCGC 0.510267 -274 AAGTCCGCAGGCCGTTGCCGAAATTCGCAA 14 118 1 GCCGTTGCCG 0.892932 -157 GAAATTTGCTGCTGGTGCGGAGGATTAGGC 16 12 0 GCTGGTGCGG 0.807109 -183 GCGCTGACTACGCGCTGCTCCGGGGAAACG 16 46 1 CGCGCTGCTC 0.816636 -149 CACTTTATGCGCCGGGGCCCACGAATACGG 16 93 1 GCCGGGGCCC 0.826551 -102 AGCCGCGGCACGGGATGCTGCCGTCCGTAT 16 117 0 CGGGATGCTG 0.679956 -78 ATCCCGTGCCGCGGCTGGCCGGACGTGATC 16 131 1 GCGGCTGGCC 0.844345 -64 GACGATCGTGGGCGCTACCGCCAATCCGGT 19 35 1 GGCGCTACCG 0.737209 -266 CATGATCTACCCGGATACCGGATTGGCGGT 19 51 0 CCGGATACCG 0.817303 -250 GTTGATCTGCCCTGGTGGGGCGGACTCACA 19 91 1 CCTGGTGGGG 0.487551 -210 CTAAACTTCAGGGGTTGCCGTGAGCAGACC 19 153 1 GGGGTTGCCG 0.752346 -148 GCAGACCTCGGCCGGCGCGCATAAGCTTTG 19 176 1 GCCGGCGCGC 0.73229 -125 ACGATGCAGTGGGGGTACCCCCAGACGCGC 20 48 1 GGGGGTACCC 0.886621 -116 CGGCCCCCTCGCCGCTGCGCGTCTGGGGGT 20 64 0 GCCGCTGCGC 0.976974 -100 GCATCGTCGCCCGGATAGGCTCGACCGCC 22 10 0 CCGGATAGGC 0.582893 -147 CTATCCGGGCGACGATGCGCGCCGCAGCGA 22 22 1 GACGATGCGC 0.840973 -135 AACAGGTTGGCCGGGGGCCCTGTTAGGGTG 22 66 1 CCGGGGGCCC 0.796018 -91 CTGTTAGGGTGCCGGTACGGGACCTAGTCT 22 85 1 GCCGGTACGG 0.936909 -72 AGTAGTAGGCCCGGGTTCCCGGCCAGCGTT 25 70 1 CCGGGTTCCC 0.897891 -117 TGGCTCGCCCAGCGGTGCCCGCGGGGGCTA 25 124 0 AGCGGTGCCC 0.766428 -63 GCTAAGCCCAGGGGGTACCCCCGG 26 5 0 GGGGGTACCC 0.886621 -296 GCGCCCTGGCCCCAGTGCCCAGCTAAGCCC 26 26 0 CCCAGTGCCC 0.839817 -275 GGTCACGAGTAGCGGTGGGCGGTTTGTGCC 26 126 0 AGCGGTGGGC 0.401478 -175 TATCCAGCGAGCCGCTCCCGGGCTGATTAC 26 234 0 GCCGCTCCCG 0.807215 -67 CGCGCGTTGCCCGGTCTCTCTG 27 3 1 CGCGTTGCCC 0.886763 -190 GCAGGCGCCGCGCAATGCGCTTGCAGGACT 27 88 1 CGCAATGCGC 0.536626 -105 GGTGACGATACGGGTTGCCCTGGTGCATGC 28 63 0 CGGGTTGCCC 0.845129 -134 GGTGAACCGCGCCGCTACCGAAACACATGC 28 124 1 GCCGCTACCG 0.842905 -73 AGGCACTGCTGGCGGTGCCGGGCTCCGCGG 29 16 0 GGCGGTGCCG 0.973072 -285 GCAGTGCCTCGCGGATGCCCTGATCGTCGT 29 37 1 GCGGATGCCC 0.960105 -264 AGATCGGCTTTCGGGTGCGCTGAGGAGGTA 29 266 1 TCGGGTGCGC 0.881187 -35 CCGCGCTCCCCCGGCTGCTCGGCGGCGGGA 30 65 0 CCGGCTGCTC 0.855823 -70 AACAGCAAGTCCCGGTGGGCGGAGGTGCG 31 10 0 CCCGGTGGGC 0.962091 -254 GGCCCCGGCGGCCGTTGCCGACACCTCGGC 31 92 0 GCCGTTGCCG 0.892932 -172 GGGTTCCGCACCCGGTGCGCGACCGTGTGA 31 191 1 CCCGGTGCGC 0.992405 -73 CCTGTTAGCACAGGCTGCCCTAATTTTAGT 33 70 0 CAGGCTGCCC 0.796534 -29 GAGCTACGGAGGCGATGCGCAGGTCAGTTT 34 120 0 GGCGATGCGC 0.956535 -181 CTGCTATTTCCACAGTGCCCCCGGCACGAC 34 196 0 CACAGTGCCC 0.383039 -105 TACGCAGGTGCGGGGTGGCGGTCGTGGCAG 36 22 0 CGGGGTGGCG 0.851346 -31 AACGTTCTGGGCCGGTTCGGCCCAGCAAAT 37 20 1 GCCGGTTCGG 0.882187 -281 CAGCAAATGGTGCGGTACGCGCAGAACCGC 37 42 1 TGCGGTACGC 0.530639 -259 GAACGGCACACGCGGTTCTGCGCGTACCGC 37 53 0 CGCGGTTCTG 0.441588 -248 GATACAGGCCGGGGGTGCTCCCTTGGATAT 37 99 0 GGGGGTGCTC 0.87371 -202 GCCTGTATCGGGCGGTCCTCGGTAGTGGCT 37 120 1 GGCGGTCCTC 0.647772 -181 AGGTCTGAATGCGGCTACGGCCATCGATCG 37 186 0 GCGGCTACGG 0.797527 -115 GCGCAATCCAGCGGGTTCGCCGAACCCCGA 37 233 0 GCGGGTTCGC 0.884431 -68 TGGGGCCGTACCGGTTGGGCCCCATCTGAA 39 11 1 CCGGTTGGGC 0.680918 -27 AGCCGTCGACCCCGATTCGCGCGGGCGGAA 40 49 1 CCCGATTCGC 0.82038 -166 AGCCCTCGATCAGGCTGGCGGCAGGCCTGG 40 136 0 CAGGCTGGCG 0.331366 -79 TGGGTTTTGGCCCGGTCCGGGCTGGATGTT 40 183 1 CCCGGTCCGG 0.922251 -32 CTATCGCAACGGCAGTGCCGC 41 20 1 GGCAGTGCCG 0.604074 -11 AGCTCGGCGGCCCGTTGCTCCACCCCACAT 42 19 1 CCCGTTGCTC 0.729015 -173 GCCTTCTGCTTCCGGTGCGGTCCGGCGGAC 42 132 1 TCCGGTGCGG 0.874443 -60 GTCGCAAAACGACGGTGGGGACTTGTC 42 175 1 GACGGTGGGG 0.626266 -17 GACGCGGTGCCGCCGCGGGCGA 44 3 1 CGCGGTGCCG 0.977007 -234 TGCCGCCGCGGGCGATACGCTCCGACCGTC 44 18 1 GGCGATACGC 0.824181 -219 TGATCCCTGACCTGATGCCGCCCAAGTCTG 44 110 0 CCTGATGCCG 0.650871 -127 TTTATCGACACCGGGTGCTGCCAGAGAACT 44 193 1 CCGGGTGCTG 0.910559 -44 TGCACTCCTGCGGGTTCGCTACCTAAGCA 46 36 0 GCGGGTTCGC 0.884431 -19 CCGTGTCGACGACGATGCGGTGGGGGTACC 47 17 1 GACGATGCGG 0.775903 -48 GGGCATTCTGGCGGATTGCGCATATTCTTC 48 48 0 GCGGATTGCG 0.248741 -253 GGCACTCTCCGCCGATACCCCAGATGTCTC 48 87 1 GCCGATACCC 0.894683 -214 CATCTAATGCCCCGGTGAGCGAAGGGCGCA 48 200 1 CCCGGTGAGC 0.607454 -101 ATTCGGTACGAGGGATGCGCCCTTCGCTCA 48 215 0 AGGGATGCGC 0.491905 -86 TACCGAATTCCCGGATTCCCACCCCATCGA 48 237 1 CCGGATTCCC 0.727153 -64 ********** Masking position 6 Map Score: 87.078 Number of sites scoring better than the average of aligned sites = 40934 Number in coding regions = 38338 Number in noncoding regions = 2596 Number of orfs with sites within 600 bp upstream = 1232 Fraction of orfs with sites within 600 bp upstream = 0.19788 Motif number 3 CCCGGATCGCGCCGGGCTGGTTGCGCCCTC 1 109 0 GCCGGGCTGG 0.823873 -192 TCGGCCACGGCGAGGTCGCCAACAGTTCGA 1 179 0 CGAGGTCGCC 0.683236 -122 GAAACGATGTCGCGGCCGCCGGATGCCCAT 1 207 1 CGCGGCCGCC 0.522345 -94 TGCCCATTTGGCCGGGCAGCCGATTGCTCC 1 230 1 GCCGGGCAGC 0.909249 -71 CAACCATGGCCCAGGTCTGGACGTACGCGA 2 48 1 CCAGGTCTGG 0.849401 -54 CACTACGCTTCGGGGCCGCCGGTTAGGTCT 3 14 0 CGGGGCCGCC 0.622052 -75 CGCCATGACCGCCGGCGACGATGCCGAGCG 9 55 1 GCCGGCGACG 0.395989 -44 CGTATCGTGTGGGGGTCGGGCGCGCCAATA 11 24 1 GGGGGTCGGG 0.730442 -118 CGCGAGGCTACCGGGCCGGGGCAGTATTGA 12 13 1 CCGGGCCGGG 0.551767 -23 ATCATGCCAACGCCGTGGCGGAAACACCAA 13 72 0 CGCCGTGGCG 0.629917 -80 GACGACGGTAGGGCGTCAGCGTTTTCGGCA 14 230 1 GGGCGTCAGC 0.829426 -45 CCACGAATACGGACGGCAGCATCCCGTGCC 16 111 1 GGACGGCAGC 0.7684 -84 GCATCCCGTGCCGCGGCTGGCCGGACGTGA 16 129 1 CCGCGGCTGG 0.935675 -66 CTTCAAGCCCCGCGGCACCTACCGTTGAC 17 10 1 CCGCGGCACC 0.92177 -22 GTTGATCTGCCCTGGTGGGGCGGACTCACA 19 91 1 CCTGGTGGGG 0.417765 -210 GCGCGCCGGCCGAGGTCTGCTCACGGCAAC 19 166 0 CGAGGTCTGC 0.796923 -135 CAAAGCTTATGCGCGCCGGCCGAGGTCTGC 19 176 0 GCGCGCCGGC 0.666638 -125 GCTTGGTCGGCCCCGCGTGCCCGTCGGCGA 19 205 1 CCCCGCGTGC 0.578651 -96 CAAAGACCGCGCACGTCAGGGATGGTCCTG 19 235 1 GCACGTCAGG 0.812724 -66 CACACGTCAACCAGGTCAGGAGATCTA 19 284 1 CCAGGTCAGG 0.85993 -17 ATGTTCTAGTCCCCGTGTCCCG 20 3 0 CCCCGTGTCC 0.824634 -161 CCCACTGCATCGTCGTCAGCGCGGTCATAT 20 31 0 CGTCGTCAGC 0.644945 -133 CCTCGCCGCTGCGCGTCTGGGGGTACCCCC 20 58 0 GCGCGTCTGG 0.877235 -106 CGCTCTGCATCGTCGTCAGCGCGGTCATCG 20 118 0 CGTCGTCAGC 0.644945 -46 TCGAGCCTATCCGGGCGACGATGCGCGCCG 22 16 1 CCGGGCGACG 0.5495 -141 GCCGGCCCCAGGAGGTCAGCGCC 24 4 0 GGAGGTCAGC 0.689296 -194 CGCTACGGGACGCCGGGTGCTTTGCCGGCC 24 27 0 CGCCGGGTGC 0.824825 -171 GTCGAAGCGGCCCGGTCTGCGCCGTCCATT 24 73 0 CCCGGTCTGC 0.944086 -125 GGCCCGGGTTCCCGGCCAGCGTTGTCATCC 25 77 1 CCCGGCCAGC 0.640655 -110 CCTTAGCCCCCGCGGGCACCGCTGGGCGAG 25 121 1 CGCGGGCACC 0.855351 -66 GGGCCTCGCCTCCCCTGAAGAGT 25 174 0 CCTCGCCTCC 0.485014 -13 GGCACTGGGGCCAGGGCGCGGTGTTTCGAT 26 37 1 CCAGGGCGCG 0.741134 -264 CAGCATCAACCGGCGTCAGCGTGCGAAATT 26 89 0 CGGCGTCAGC 0.900009 -212 ATCCACCGTTGCACGTCTGCACCGCAAACG 26 185 0 GCACGTCTGC 0.848763 -116 AGGGTAATCAGCCCGGGAGCGGCTCGCTGG 26 231 1 GCCCGGGAGC 0.844981 -70 GCGCATTGCGCGGCGCCTGCTGGCAGTCGG 27 78 0 CGGCGCCTGC 0.809018 -115 CTTATGTTGGCCACGGCCGCTGTTCGCCTC 27 136 0 CCACGGCCGC 0.67311 -57 ATTGGGTCACGGGCGTCACGGCATGCACCA 28 43 1 GGGCGTCACG 0.660414 -154 GCGCCGCGGAGCCCGGCACCGCCAGCAGTG 29 13 1 GCCCGGCACC 0.894042 -288 ATGGCAACGTCCAGGTCGGCGACCGCAATA 29 117 1 CCAGGTCGGC 0.880255 -184 ATAAACCATAGCCCGGCAGGTCCGGTCAGT 30 15 1 GCCCGGCAGG 0.911325 -120 CCCGGCTGCTCGGCGGCGGGATCTACGACG 30 56 0 CGGCGGCGGG 0.879627 -79 CGCCGCGCTCCCCCGGCTGCTCGGCGGCGG 30 67 0 CCCCGGCTGC 0.952707 -68 GCCGGGGGAGCGCGGCGTCGAATGCGCTTT 30 80 1 CGCGGCGTCG 0.371483 -55 AACAGCAAGTCCCGGTGGGCGGAGGTGCG 31 10 0 CCCGGTGGGC 0.857438 -254 ATGTCCCCGCCGAGGTGTCGGCAACGGCCG 31 84 1 CGAGGTGTCG 0.362208 -180 GAGTTGGTGGCCCCGGCGGCCGTTGCCGAC 31 100 0 CCCCGGCGGC 0.936168 -164 CGACACACATCCAGGGCGCGGCGAGTTGGT 31 122 0 CCAGGGCGCG 0.741134 -142 CGGTCGCGCACCGGGTGCGGAACCCAGGTG 31 186 0 CCGGGTGCGG 0.395928 -78 CGGCGCAGGTCCACCTCTGGCCTATCACAC 31 215 0 CCACCTCTGG 0.104932 -49 GCTTGACCCCGTCTGCCCAGCCGTGC 32 7 1 CCCCGTCTGC 0.958571 -46 GGCCGCCAGCGCACGGCTGGGCAGACGGGG 32 17 0 GCACGGCTGG 0.805073 -36 TAGGCTACTCGGCCGCCAGCGCACGGCTGG 32 27 0 GGCCGCCAGC 0.709336 -26 CTCCTTAACAGGGGGGCTGGTAGCGCAGGT 33 16 1 GGGGGGCTGG 0.754178 -83 TAGACCTTTCGCGCGTGTGGCGTCTGGAAA 34 65 1 GCGCGTGTGG 0.719699 -236 TCCACAGTGCCCCCGGCACGACTCGAACGT 34 188 0 CCCCGGCACG 0.918542 -113 TGTGGAAATAGCAGGTCAGCATGGTGGCGT 34 212 1 GCAGGTCAGC 0.819432 -89 CGGTGTCAAGCCACGCCACCATGCTGACCT 34 224 0 CCACGCCACC 0.730746 -77 ACGCGCAGAACCGCGTGTGCCGTTCCAGCG 37 58 1 CCGCGTGTGC 0.865356 -243 CCGATACAGGCCGGGGGTGCTCCCTTGGAT 37 101 0 CCGGGGGTGC 0.847588 -200 GATCCGGAGAGCCCGGCAGCCACTACCGAG 37 137 0 GCCCGGCAGC 0.935257 -164 CGGATCTGGGGCAGGTCGGCCGCTTCGATC 37 161 1 GCAGGTCGGC 0.802931 -140 CCGCTGGATTGCGCGTGACGACGCGAAACA 37 249 1 GCGCGTGACG 0.590195 -52 GAATCGGGGTCGACGGCTGGCCGAGTGCTA 40 37 0 CGACGGCTGG 0.805561 -178 GTCTGCAACGGCCCGCCGGCGGAGTCTGGC 40 86 1 GCCCGCCGGC 0.537481 -129 GTTTGTAGGACCAGGCCTGCCGCCAGCCTG 40 126 1 CCAGGCCTGC 0.525165 -89 TGGGTTTTGGCCCGGTCCGGGCTGGATGTT 40 183 1 CCCGGTCCGG 0.701032 -32 TTCCGCCCAGCTCGGCGGCCCGTTGCTCC 42 10 1 GCTCGGCGGC 0.671292 -182 GACACTTATACCTGGGGTCGCAAAACGACG 42 159 1 CCTGGGGTCG 0.310096 -33 GTATCGCCCGCGGCGGCACCGCGTC 44 6 0 CGGCGGCACC 0.851124 -231 CTGTCGCCGCCGCGGCCAGCATCTCCGGGT 44 83 0 CGCGGCCAGC 0.670317 -154 AAGCTACCAGCCAGGTCACCGCAGAGGACG 44 154 0 CCAGGTCACC 0.821003 -83 TCTGGCAGCACCCGGTGTCGATAAAGACGT 44 188 0 CCCGGTGTCG 0.726706 -49 CCGACCTGTGCCGCGTCTCGAGTTCTCTGG 44 213 0 CCGCGTCTCG 0.877814 -24 ACGCGGCACAGGTCGGCACC 44 227 1 GGTCGGCACC 0.383716 -10 ACCTCTTTCTGCCCGTCGGGTGTGAGCTTG 45 38 0 GCCCGTCGGG 0.896494 -36 GGTTGCCACGGCCGCCACCTCTTTCTGCC 45 55 0 GGCCGCCACC 0.676002 -19 AATGCCCCGTGTCGACGACGATGC 47 5 1 CCCCGTGTCG 0.776173 -60 GCATATTCTTCCGCGCGTCGTCATAGCCTA 48 29 0 CCGCGCGTCG 0.588411 -272 CATCTAATGCCCCGGTGAGCGAAGGGCGCA 48 200 1 CCCGGTGAGC 0.873556 -101 ********** Masking position 5 Map Score: 123.928 Number of sites scoring better than the average of aligned sites = 58154 Number in coding regions = 54580 Number in noncoding regions = 3574 Number of orfs with sites within 600 bp upstream = 1424 Fraction of orfs with sites within 600 bp upstream = 0.228718 Motif number 4 CGGTCAGGCACGGTCGGTGCGACCGTCCCTG 1 17 0 CGGTCGGGCG 0.910441 -284 GAGGGCGCAACCAGCCCGGCGCGATCCGGGC 1 109 1 CCAGCCCGCG 0.762898 -192 CGGCGCGATCCGGGCTCGTCGAAACCGGAGT 1 125 1 CGGGCTCTCG 0.914635 -176 GGCGAGGTCGCCAACAGTTCGATCGTGCGGT 1 170 0 CCAACAGTCG 0.116939 -131 GACATCGTTTCGGCCACGGCGAGGTCGCCAA 1 187 0 CGGCCACGCG 0.947191 -114 AATGGGCATCCGGCGGCCGCGACATCGTTTC 1 207 0 CGGCGGCGCG 0.882766 -94 CAGCTCAGTCCGGTCTGTTCGGCGTACTCGG 1 280 0 CGGTCTGTCG 0.779443 -21 TACGCGATCACCGCCGCTGTGCGGCGAGGAG 2 71 1 CCGCCGCGTG 0.509237 -31 TCGCTGCGCTCGGCATCGTCGCCGGCGGTCA 9 60 0 CGGCATCTCG 0.579732 -39 ATGCGCCGCTCCTCCTCATCGCTGCGCTCGG 9 78 0 CCTCCTCTCG 0.868132 -21 TGCCCCGGCCCGGTAGCCTCGCGGC 12 5 0 CGGTAGCTCG 0.249021 -31 CCAACCGAGCGTACCGGGTGT 13 1 1 CCAACCGGCG 0.28828 -151 ATTGGTGTTTCCGCCACGGCGTTGGCATGAT 13 71 1 CCGCCACGCG 0.958555 -81 GCCGTTGACACCGCCTGGACGACGGTAGGGC 14 213 1 CCGCCTGACG 0.453297 -62 CCGTATTCGTGGGCCCCGGCGCATAAAGTGT 16 92 0 GGGCCCCGCG 0.764697 -103 TAGGGGACGACCTACTCAGCGCAAAATTTCG 19 125 0 CCTACTCGCG 0.554571 -176 GAGCAGACCTCGGCCGGCGCGCATAAGCTTT 19 174 1 CGGCCGGGCG 0.909919 -127 GTCGGCCCCGCGTGCCCGTCGGCGACAAAGA 19 210 1 CGTGCCCTCG 0.68563 -91 CCCACTGCATCGTCGTCAGCGCGGTCATATG 20 30 0 CGTCGTCGCG 0.578915 -134 TCATCGCTTGCGGCCCCCTCGCCGCTGCGCG 20 73 0 CGGCCCCTCG 0.908165 -91 GAGCGCTACTCCTCCTCATCGCTTGCGGCCC 20 88 0 CCTCCTCTCG 0.868132 -76 CGCTCTGCATCGTCGTCAGCGCGGTCATCGA 20 117 0 CGTCGTCGCG 0.578915 -47 GAGCGCTACTCCTCCTCATCGCTTGCGCTCT 20 142 0 CCTCCTCTCG 0.868132 -22 GCGACGATGCGCGCCGCAGCGATACCTTGCC 22 30 1 GCGCCGCGCG 0.848236 -127 GGCGCAGACCGGGCCGCTTCGACTCAGGAAG 24 80 1 GGGCCGCTCG 0.788754 -118 GCTATGGCTACGAGCTGTGCGAACATCCGCT 25 31 1 CGAGCTGGCG 0.796482 -156 CAGCATCAACCGGCGTCAGCGTGCGAAATTC 26 88 0 CGGCGTCGCG 0.854635 -213 CCAGAGAGACCGGGCAACGCGCG 27 3 0 CGGGCAAGCG 0.639957 -190 TAACGCTTTGCCAGCGATTCGCCAGAGAGAC 27 24 0 CCAGCGATCG 0.312328 -169 CGACTGCCAGCAGGCGCCGCGCAATGCGCTT 27 79 1 CAGGCGCGCG 0.658934 -114 CTCTTCGACCAGCCATTCGTTTTGCCCGA 27 174 0 CCAGCCATCG 0.158296 -19 GCATGTGTTTCGGTAGCGGCGCGGTTCACCG 28 123 0 CGGTAGCGCG 0.410785 -74 CTGGCGGTGCCGGGCTCCGCGGCGCAA 29 7 0 CGGGCTCGCG 0.96996 -294 TCGATGGCAACGTCCAGGTCGGCGACCGCAA 29 114 1 CGTCCAGTCG 0.58372 -187 TAACTGGACTCGATCACGTCGGTATTGCGGT 29 138 0 CGATCACTCG 0.312021 -163 TTCTCCGGGTCGGTCAGATCGGCTTTCGGGT 29 251 1 CGGTCAGTCG 0.539807 -50 GTTATGACTACCTCCTCAGCGCACCCGAAAG 29 273 0 CCTCCTCGCG 0.932626 -28 CCGCGCTCCCCCGGCTGCTCGGCGGCGGGAT 30 64 0 CCGGCTGTCG 0.881857 -71 TTGGCGCCTGCCATCTGCGCGCGTGTGATAC 30 108 1 CCATCTGGCG 0.578778 -27 GTCCTTGCTACGGTTTGGGCGACTGGTTGCA 31 39 0 CGGTTTGGCG 0.108771 -225 GCGGCCGTTGCCGACACCTCGGCGGGGACAT 31 84 0 CCGACACTCG 0.501887 -180 GTGTCGGCAACGGCCGCCGGGGCCACCAACT 31 98 1 CGGCCGCGGG 0.795344 -166 GCCGCCGGGGCCACCAACTCGCCGCGCCCTG 31 110 1 CCACCAATCG 0.224056 -154 CCTGTCACTGCGCCCGGAGCGACACACATCC 31 140 0 CGCCCGGGCG 0.661375 -124 CCCCGTCTGCCCAGCCGTGCGCTGGCGGCCG 32 17 1 CCAGCCGGCG 0.667808 -36 GATAAACTGACCTGCGCATCGCCTCCGTAGC 34 117 1 CCTGCGCTCG 0.802089 -184 CTAGGTCGCACGTTCGAGTCGTGCCGGGGGC 34 179 1 CGTTCGATCG 0.21078 -122 GCTGCCACGACCGCCACCCCGCACCTGCGTA 36 21 1 CCGCCACCCG 0.732795 -32 AGAACGTTCTGGGCCGGTTCGGCCCAGCAAA 37 18 1 GGGCCGGTCG 0.699419 -283 TAGTGGCTGCCGGGCTCTCCGGATCTGGGGC 37 142 1 CGGGCTCCCG 0.806116 -159 TGGGGCAGGTCGGCCGCTTCGATCGATGGCC 37 167 1 CGGCCGCTCG 0.977538 -134 CCGTCGAACGCGTGCTGTCCGGCGGG 40 6 0 CGTGCTGCCG 0.377948 -209 CCAACGCTTTCCGCCCGCGCGAATCGGGGTC 40 56 0 CCGCCCGGCG 0.94828 -159 ATGCCAGACTCCGCCGGCGGGCCGTTGCAGA 40 87 0 CCGCCGGGGG 0.636898 -128 GGCCTGCCGCCAGCCTGATCGAGGGCTAAGA 40 139 1 CAGCCTGTCG 0.481595 -76 AACGGGCCGCCGAGCTGGGCGGAA 42 4 0 CGAGCTGGCG 0.624371 -188 GTATAAGTGTCCGCCGGACCGCACCGGAAGC 42 139 0 CCGCCGGCCG 0.842767 -53 CGGAGCGTATCGCCCGCGGCGGCACCGCGTC 44 11 0 CGCCCGCGCG 0.78567 -226 TCCTCGTTGACGGTCGGAGCGTATCGCCCGC 44 25 0 CGGTCGGGCG 0.895989 -212 ACCACATGGCCGTCCTCCTCGTTGACGGTCG 44 40 0 CGTCCTCTCG 0.899573 -197 CCGGAGATGCTGGCCGCGGCGGCGACAGACT 44 85 1 TGGCCGCGCG 0.600664 -152 GGGATCAGCGCCGCCTATGCGCGTCCTCTGC 44 133 1 CCGCCTAGCG 0.878968 -104 CGCCTATGCGCGTCCTCTGCGGTGACCTGGC 44 144 1 CGTCCTCGCG 0.950927 -93 AGTGGTACCCCCACCGCATCGTCGTCGACAC 47 19 0 CCACCGCTCG 0.892793 -46 ATAGCCTAATCGGACTACGCGGATCG 48 6 0 CGGACTAGCG 0.478035 -295 GCACCTGGGCCGGGCTGTGCGGGCAAGGCGT 48 147 1 CGGGCTGGCG 0.947503 -154 TCCCGGATTCCCACCCCATCGAGGTCGCAGC 48 245 1 CCACCCCTCG 0.77492 -56 ******* *** Masking position 11 Map Score: 99.8374 Number of sites scoring better than the average of aligned sites = 34204 Number in coding regions = 32238 Number in noncoding regions = 1966 Number of orfs with sites within 600 bp upstream = 1007 Fraction of orfs with sites within 600 bp upstream = 0.161741 Motif number 5 AGGGACGGTCGCACCGACCGTGCCTGACCG 1 18 1 GCACCGACCG 0.978008 -283 GGCTGGTTGCGCCCTCCCCGCTCTGTCCTG 1 95 0 GCCCTCCCCG 0.730948 -206 GTTTCGACGAGCCCGGATCGCGCCGGGCTG 1 120 0 GCCCGGATCG 0.844928 -181 CGAGTACGCCGAACAGACCGGACTGAGCTG 1 281 1 GAACAGACCG 0.753164 -20 CCGAGACCTAACCGGCGGCCCCGA 3 5 1 GACCTAACCG 0.612594 -84 GTAGGGTGACGCCATGACCGCCGGCGACGA 9 46 1 GCCATGACCG 0.932126 -53 AAGCCCCGCGGCACCTACCGTTGACTT 17 15 1 GCACCTACCG 0.809796 -17 CCAATGGACGGCGCAGACCGGGCCGCTTCG 24 71 1 GCGCAGACCG 0.944844 -127 GAATCGCATGGCCCTGACTGTGGTGCC 24 181 1 GCCCTGACTG 0.7649 -17 GCGGATGTTCGCACAGCTCGTAGCCATAGC 25 31 0 GCACAGCTCG 0.610236 -156 TGTGAGTCGGGCACAAACCGCCCACCGCTA 26 117 1 GCACAAACCG 0.822892 -184 ACTTATGTTGGCCACGGCCGCTGTTCGCCT 27 137 0 GCCACGGCCG 0.884107 -56 GGTGAACCGCGCCGCTACCGAAACACATGC 28 124 1 GCCGCTACCG 0.52231 -73 CCTCGCGGATGCCCTGATCGTCGTTGATTT 29 43 1 GCCCTGATCG 0.917674 -258 CCCGAAAGCCGATCTGACCGACCCGGAGAA 29 251 0 GATCTGACCG 0.41927 -50 AGACTGACCGGACCTGCCGGGCTATGGTTT 30 17 0 GACCTGCCGG 0.448008 -118 GCAACCAGTCGCCCAAACCGTAGCAAGGAC 31 40 1 GCCCAAACCG 0.960405 -224 CGAGTTGGTGGCCCCGGCGGCCGTTGCCGA 31 101 0 GCCCCGGCGG 0.904137 -163 AGGTGGACCTGCGCCGACCGACGATCGATC 31 229 1 GCGCCGACCG 0.961806 -35 ACTCAATGCTGCCACGACCGCCACCCCGCA 36 14 1 GCCACGACCG 0.968977 -39 GGCCGAACCGGCCCAGAACGTTCTCACTCT 37 12 0 GCCCAGAACG 0.902376 -289 GAGCCCGGCAGCCACTACCGAGGACCGCCC 37 129 0 GCCACTACCG 0.749396 -172 TTCAGATGGGGCCCAACCGGTACGGCCCCA 39 11 0 GCCCAACCGG 0.65661 -27 CAAACATCCAGCCCGGACCGGGCCAAAACC 40 185 0 GCCCGGACCG 0.980352 -30 TTCCGCCCAGCTCGGCGGCCCGTT 42 5 1 GCCCAGCTCG 0.890991 -187 GAAGCAGAAGGCCCAAACGGTTAAGAACAT 42 114 0 GCCCAAACGG 0.801376 -78 CGGGCGATACGCTCCGACCGTCAACGAGGA 44 26 1 GCTCCGACCG 0.942129 -211 GGTTGCCACGGCCGCCACCTCTTT 45 60 0 GCCACGGCCG 0.884107 -14 CCGCCAGAATGCCCAGAACGCTAGGCACTC 48 64 1 GCCCAGAACG 0.902376 -237 CGCCTTGCCCGCACAGCCCGGCCCAGGTGC 48 147 0 GCACAGCCCG 0.934799 -154 ********** Masking position 1 Map Score: 39.9973 Number of sites scoring better than the average of aligned sites = 7737 Number in coding regions = 7235 Number in noncoding regions = 502 Number of orfs with sites within 600 bp upstream = 417 Fraction of orfs with sites within 600 bp upstream = 0.0669772 Motif number 6 GCTCGTCGAAACCGGAGTTGGCCCTTGTCTGA 1 138 1 ACCGGTTGGC 0.393885 -163 CCGAAACGATGTCGCGGCCGCCGGATGCCCAT 1 205 1 GTCGGCCGCC 0.830818 -96 GCCGCACAGCGGCGGTGATCGCGTACGTCCAG 2 64 0 GGCGGATCGC 0.932257 -38 TCAACCGGGTGACTAGGATCGCGGTTATCACC 5 72 1 GACTGATCGC 0.392273 -23 CATGACCGCCGGCGACGATGCCGAGCGCAGCG 9 58 1 GGCGGATGCC 0.845495 -41 CGGGGGATCGGCCGTTGAGGGCCATACTACCC 11 99 0 GCCGGAGGGC 0.799083 -43 GTGTTGTGAAGACGCCATTCGCAGAGTTAGCA 13 28 1 GACGATTCGC 0.734866 -124 GTGTTTCCGCCACGGCGTTGGCATGATTCGCA 13 75 1 CACGGTTGGC 0.299761 -77 GGATCCGCAGGACGTCGATCCGTGGGTTTACC 14 13 1 GACGGATCCG 0.292429 -262 CTGCGGATTTGTCGTTACTGGCGGGTAGCTTC 14 44 1 GTCGACTGGC 0.882711 -231 GCAGGCCGTTGCCGAAATTCGCAAGTGAAATG 14 124 1 GCCGATTCGC 0.779542 -151 AGCATCCCGTGCCGCGGCTGGCCGGACGTGAT 16 128 1 GCCGGCTGGC 0.983264 -67 GTCAGGGATGGTCCTGGCTGGCTCCTCCTACC 19 249 1 GTCCGCTGGC 0.868486 -52 TAGAACATATGACCGCGCTGACGACGATGCAG 20 25 1 GACCGCTGAC 0.399097 -139 AGCGCTCGATGACCGCGCTGACGACGATGCAG 20 112 1 GACCGCTGAC 0.399097 -52 CTATCCGGGCGACGATGCGCGCCGCAGCGATA 22 22 1 GACGGCGCGC 0.942996 -135 CGCTTCCTGAGTCGAAGCGGCCCGGTCTGCGC 24 81 0 GTCGGCGGCC 0.878773 -117 CCTGTTTCGCGACGGAGATCGCTTCCTGAGTC 24 100 0 GACGGATCGC 0.966771 -98 GGTTGGTAGCGTCGCCGATCCCAAGGGAGGAA 24 152 1 GTCGGATCCC 0.93611 -46 TGATCGTTGAGCGGATGTTCGCACAGCTCGTA 25 39 0 GCGGGTTCGC 0.379526 -148 TCAGTAGTAGGCCCGGGTTCCCGGCCAGCGTT 25 68 1 GCCCGTTCCC 0.604781 -119 GTACCCGGATGACAACGCTGGCCGGGAACCCG 25 81 0 GACAGCTGGC 0.504096 -106 AGCAATCTAGATCGTGGCTCGCCCAGCGGTGC 25 136 0 ATCGGCTCGC 0.650959 -51 AGCCACTAGTGCCCCAGCTGCCACGTAGGTCA 26 151 0 GCCCGCTGCC 0.809419 -150 GTTGGCCACGGCCGCTGTTCGCCTCGATTCTT 27 129 0 GCCGGTTCGC 0.954918 -64 TTTCGGTAGCGGCGCGGTTCACCGCTCGAAGC 28 115 0 GGCGGTTCAC 0.444516 -82 AGCCTGAGGGGACGCCATTCGCAGGAGAGAAG 28 175 1 GACGATTCGC 0.734866 -22 TTGCGCCGCGGAGCCCGGCACCGCCA 29 5 1 GCCGGAGCCC 0.853875 -296 CAACGTCCAGGTCGGCGACCGCAATACCGACG 29 121 1 GTCGGACCGC 0.831332 -180 ACGACCGGTCGTCGTAGATCCCGCCGCCGAGC 30 47 1 GTCGGATCCC 0.936112 -88 CCGCCGAGGTGTCGGCAACGGCCGCCGGGGCC 31 90 1 GTCGAACGGC 0.351542 -174 TTGTACGTGTGTCGAGGATCACACAATAACCA 34 17 1 GTCGGATCAC 0.745839 -284 AATTTTTCCAGACGCCACACGCGCGAAAGGTC 34 67 0 GACGACACGC 0.26375 -234 GACCCTTGACGGTACTCGCTACGCTGAAT 35 15 0 GACGACTCGC 0.898319 -19 GCGGTCCTCGGTAGTGGCTGCCGGGCTCTCCG 37 131 1 GTAGGCTGCC 0.311526 -170 GCTGTTTCGCGTCGTCACGCGCAATCCAGCGG 37 249 0 GTCGACGCGC 0.732087 -52 CACTCGGCCAGCCGTCGACCCCGATTCGCGCG 40 40 1 GCCGGACCCC 0.747592 -175 CCTACAAACCGTCGTAAATGCCAGACTCCGCC 40 103 0 GTCGAATGCC 0.680395 -112 GGTCAACGCCGACGGAGATGGCG 43 2 0 GACGGATGGC 0.96201 -40 GACGCGGTGCCGCCGCGGGCGATACGCTCC 44 9 1 GCCGGCGGGC 0.93138 -228 GCGCATAGGCGGCGCTGATCCCTGACCTGATG 44 123 0 GGCGGATCCC 0.874997 -114 CATTAGATGCGACGTTGCTGGCGCTGGATGGA 48 177 0 GACGGCTGGC 0.978585 -124 CCCCATCGAGGTCGCAGCTGGCCGAGCAAGCG 48 258 1 GTCGGCTGGC 0.978763 -43 **** ****** Masking position 12 Map Score: 56.9621 Number of sites scoring better than the average of aligned sites = 23165 Number in coding regions = 22109 Number in noncoding regions = 1056 Number of orfs with sites within 600 bp upstream = 673 Fraction of orfs with sites within 600 bp upstream = 0.108095 Motif number 7 GATCTCCTCGCCGCACAGCGGCGGTGATCGC 2 74 0 CCCACAGCGG 0.724598 -28 GATCCTCGTTCGACTAACCGCAGCCTGCCAA 6 58 0 CGCTAACCGC 0.468086 -35 CACGAAACACCGGACGAGTATGA 8 3 1 CGAACACCGG 0.750815 -28 GCCGAGCAGACGCAAAAGCACCCTTTTGCGG 15 14 1 CGAAAAGCAC 0.799731 -68 CGCGAGCAGACGCAAAAGCGCCACTTTTGCG 15 45 0 CGAAAAGCGC 0.958268 -37 TACGTTTCCCCGGAGCAGCGCGTAGTCAGCG 16 47 0 CGAGCAGCGC 0.95163 -148 GTGAGTCCGCCCCACCAGGGCAGATCAACCC 19 89 0 CCACCAGGGC 0.587692 -212 GTACCGGCACCCTAACAGGGCCCCCGGCCAA 22 72 0 CCAACAGGGC 0.934107 -85 CTCCTGGGGCCGGCAAAGCACCCGGCGTCCC 24 20 1 CGCAAAGCAC 0.843586 -178 ATCTCCGTCGCGAAACAGGGCAGTGCTAACC 24 113 1 CGAACAGGGC 0.981279 -85 TGAATTCCATCGAAACACCGCGCCCTGGCCC 26 44 0 CGAACACCGC 0.968284 -257 CACGTCTGCACCGCAAACGGCAGCCACTAGT 26 173 0 CCCAAACGGC 0.715852 -128 AGATGGCAGGCGCCAAAGCGCATTCGACGCC 30 93 0 CGCAAAGCGC 0.968763 -42 GATCGTCGGTCGGCGCAGGTCCACCTCTGGC 31 224 0 CGCGCAGGTC 0.718182 -40 CTGCCACGACCGCCACCCCGCACCTGCGTAA 36 22 1 CGCACCCCGC 0.78206 -31 GTGCGGTACGCGCAGAACCGCGTGTGCCGTT 37 51 1 CGAGAACCGC 0.72135 -250 GAGGACCGCCCGATACAGGCCGGGGGTGCTC 37 109 0 CGTACAGGCC 0.58645 -192 CGTGACGACGCGAAACAGCTCAATAATCCAG 37 262 1 CGAACAGCTC 0.906963 -39 TCGATCACCGTAACAGGACCGTTAGACTG 38 28 0 CGAACAGGAC 0.901141 -19 AACAATTGTTCGATACAGCGCAGTTGTTCAG 42 63 1 CGTACAGCGC 0.931959 -129 TACCTGGGGTCGCAAAACGACGGTGGGGACT 42 167 1 CGAAAACGAC 0.545336 -25 ACTCGAGACGCGGCACAGGTCGGCACC 44 220 1 CGCACAGGTC 0.90435 -17 GCATCGTCGTCGACACGGGGCATT 47 4 0 CGCACGGGGC 0.860352 -61 GACGCCTTGCCCGCACAGCCCGGCCCAGGTG 48 148 0 CCCACAGCCC 0.793555 -153 ** ******** Masking position 1 Map Score: 21.0683 Number of sites scoring better than the average of aligned sites = 4879 Number in coding regions = 4455 Number in noncoding regions = 424 Number of orfs with sites within 600 bp upstream = 345 Fraction of orfs with sites within 600 bp upstream = 0.0554128 Motif number 8 GGGCTGGTTGCGCCCTCCCCGCTCTGTCCT 1 96 0 CGCCCTCCCC 0.919732 -205 CGCAGCCCCCTACTCATAGGGCGAC 7 29 0 CCCCCTACTC 0.726916 -15 ATGCGCCGCTCCTCCTCATCGCTGCGCTCG 9 79 0 CCTCCTCATC 0.953396 -20 TAGGGGACGACCTACTCAGCGCAAAATTTC 19 126 0 CCTACTCAGC 0.802718 -175 CCCACTGCATCGTCGTCAGCGCGGTCATAT 20 31 0 CGTCGTCAGC 0.88705 -133 TCTGGGGGTACCCCCACTGCATCGTCGTCA 20 43 0 CCCCCACTGC 0.901066 -121 GAGCGCTACTCCTCCTCATCGCTTGCGGCC 20 89 0 CCTCCTCATC 0.953396 -75 CGCTCTGCATCGTCGTCAGCGCGGTCATCG 20 118 0 CGTCGTCAGC 0.88705 -46 GAGCGCTACTCCTCCTCATCGCTTGCGCTC 20 143 0 CCTCCTCATC 0.953396 -21 GGGCACAAACCGCCCACCGCTACTCGTGAC 26 125 1 CGCCCACCGC 0.967269 -176 GTTATGACTACCTCCTCAGCGCACCCGAAA 29 274 0 CCTCCTCAGC 0.97896 -27 GCTTGACCCCGTCTGCCCAGCCGTGC 32 7 1 CCCCGTCTGC 0.863954 -46 CGCACTCCTCCAAACATCCA 40 205 0 CGCACTCCTC 0.790469 -10 ACCACATGGCCGTCCTCCTCGTTGACGGTC 44 41 0 CGTCCTCCTC 0.967801 -196 CGCCTATGCGCGTCCTCTGCGGTGACCTGG 44 144 1 CGTCCTCTGC 0.944238 -93 GTTGCCACGGCCGCCACCTCTTTCTGCCCG 45 53 0 CCGCCACCTC 0.701398 -21 GTGAGTGGTACCCCCACCGCATCGTCGTCG 47 23 0 CCCCCACCGC 0.973523 -42 ACGAGGGATGCGCCCTTCGCTCACCGGGGC 48 208 0 CGCCCTTCGC 0.829523 -93 ********** Masking position 1 Map Score: 22.2503 Number of sites scoring better than the average of aligned sites = 2486 Number in coding regions = 2248 Number in noncoding regions = 238 Number of orfs with sites within 600 bp upstream = 192 Fraction of orfs with sites within 600 bp upstream = 0.0308384 Motif number 9 AGCCGATTGCTCCGGGAACACCCTTGACCGCC 1 247 1 TCCGGACACC 0.772899 -54 TCTTTTCTATTGCTGGTTCAACCGGGTGACTA 5 55 1 TGCGGTCAAC 0.886261 -40 CGCAATTTCGCCTCGGTACAGCGATGGCTTTG 6 29 1 CCTGGTCAGC 0.46498 -64 ACGACAAATCCGCAGGTAAACCCACGGATCGA 14 27 0 CGCGGTAACC 0.85071 -248 AGCGTGTCAACGCTGGTCCACCCATTTCACTT 14 146 0 CGCGGTCACC 0.980803 -129 GGATACGTTTCCCCGGAGCAGCGCGTAGTCAG 16 49 0 CCCGGACAGC 0.720986 -146 CAATCCGGTATCCGGGTAGATCATGATCGACA 19 56 1 TCCGGTGATC 0.790818 -245 AGATCTCCTGACCTGGTTGACGTGTGCACGGT 19 278 0 ACCGGTGACG 0.567153 -23 CTAACAGGGCCCCCGGCCAACCTGTTGGTTGG 22 60 0 CCCGGCAACC 0.340408 -97 CCTGTTAGGGTGCCGGTACGGGACCTAGTCTT 22 84 1 TGCGGTCGGG 0.834145 -73 CAGTAGTAGGCCCGGGTTCCCGGCCAGCGTTG 25 69 1 CCCGGTCCCG 0.829925 -118 AGCGTTGTCATCCGGGTACACGATAAACCTTA 25 94 1 TCCGGTCACG 0.973126 -93 CGATCTAGATTGCTGGTCAAACTCTTCAGGGG 25 154 1 TGCGGTAAAC 0.464966 -33 CGCACGCTGACGCCGGTTGATGCTGTGAGTCG 26 94 1 CGCGGTGATG 0.823167 -207 ATACGGGTTGCCCTGGTGCATGCCGTGACGCC 28 54 0 CCCGGTCATG 0.935298 -143 CTCAGGCTAATGCCGGTTCAACGATCCGAGCA 28 151 0 TGCGGTCAAC 0.886261 -46 CTTGGCATGATCCTGGTCCACGAGGAAATCAA 29 66 0 TCCGGTCACG 0.973126 -235 GATGGCAACGTCCAGGTCGGCGACCGCAATAC 29 116 1 TCCGGTGGCG 0.838696 -185 CAACAGCAAGTCCCGGTGGGCGGAGGTGCG 31 9 0 TCCGGTGGCG 0.838698 -255 CACCGGGACTTGCTGTTGCAACCAGTCGCCCA 31 23 1 TGCGTTCAAC 0.288631 -241 GGGTGCGGAACCCAGGTGGATGTCGAAACCTA 31 172 0 CCCGGTGATG 0.851053 -92 CGTCGGTCGGCGCAGGTCCACCTCTGGCCTAT 31 220 0 CGCGGTCACC 0.980803 -44 GGGCTGGTAGCGCAGGTGCGTGGTTCGAAGAT 33 29 1 CGCGGTCGTG 0.810542 -70 ATAATTGACGTGGCGGTAGACCTTTCGCGCGT 34 49 1 TGGGGTGACC 0.353302 -252 GTCGATGTTACGCAGGTGCGGGGTGGCGGTCG 36 28 0 CGCGGTCGGG 0.890552 -25 GAACCGCGTGTGCCGTTCCAGCGAGTCACTAT 37 65 1 TGCGTTCAGC 0.435572 -236 GTTTTGCGACCCCAGGTATAAGTGTCCGCCGG 42 153 0 CCCGGTTAAG 0.389521 -39 GGCCAGCATCTCCGGGTTCACCAATGCAAACC 44 68 0 TCCGGTCACC 0.974851 -169 CACAGCCCGGCCCAGGTGCAGGATCGAGGGGC 48 134 0 CCCGGTCAGG 0.964905 -167 *** *** **** Masking position 5 Map Score: 27.3779 Number of sites scoring better than the average of aligned sites = 4700 Number in coding regions = 4385 Number in noncoding regions = 315 Number of orfs with sites within 600 bp upstream = 270 Fraction of orfs with sites within 600 bp upstream = 0.0433665 Motif number 10 CAGGTTTCAGGACAGAGCGGGGAGGGCGCAA 1 88 1 GACAGGCGGG 0.90405 -213 CTGATCGTCGGATAGCGCTGGCCAACTCTGG 2 12 0 GATAGGCTGG 0.867757 -90 TCGGTACAGCGATGGCTTTGGCAGGCTGCGG 6 41 1 GATGGTTTGG 0.776369 -52 GTGTTTCCGCCACGGCGTTGGCATGATTCGC 13 75 1 CACGGGTTGG 0.703838 -77 GACGTGATCCGAGGGTGTGGGTCTCACCAGA 16 152 1 GAGGGGTGGG 0.966725 -43 GCACGTCAGGGATGGTCCTGGCTGGCTCCTC 19 245 1 GATGGCCTGG 0.905017 -56 CGCTGACGACGATGCAGTGGGGGTACCCCCA 20 40 1 GATGCGTGGG 0.826902 -124 ATCCTCTCTTGATGGCTATGGCTACGAGCTG 25 17 1 GATGGTATGG 0.414884 -170 TGCAACGGTGGATGGCGTGTGCTGCATTAAG 26 202 1 GATGGGTGTG 0.609195 -99 CGATTCGCCAGAGAGACCGGGCAACGCGCG 27 10 0 GAGAGCCGGG 0.730852 -183 GCCAGCATGTGACGGGCGTGGACTTGATCGG 29 180 1 GACGGCGTGG 0.726414 -121 CGCGCGGGCGGAAAGCGTTGGTCTGCAACGG 40 66 1 GAAAGGTTGG 0.580114 -149 GGTCAACGCCGACGGAGATGGCG 43 3 0 GACGGGATGG 0.88123 -39 TGACCCCCGTGAGAGGGTGGGTC 43 29 1 GAGAGGTGGG 0.894941 -13 CCGCGGCGGCGACAGACTTGGGCGGCATCAG 44 98 1 GACAGCTTGG 0.81933 -139 TGTCGACGACGATGCGGTGGGGGTACCACTC 47 20 1 GATGCGTGGG 0.826902 -45 GTGCAGGATCGAGGGGCTTGGTACCTGATCA 48 120 0 GAGGGCTTGG 0.912811 -181 CATTAGATGCGACGTTGCTGGCGCTGGATGG 48 178 0 GACGTGCTGG 0.574259 -123 CTGCGACCTCGATGGGGTGGGAATCCGGGAA 48 244 0 GATGGGTGGG 0.972464 -57 ***** ***** Masking position 2 Map Score: 13.2582 Number of sites scoring better than the average of aligned sites = 2704 Number in coding regions = 2541 Number in noncoding regions = 163 Number of orfs with sites within 600 bp upstream = 162 Fraction of orfs with sites within 600 bp upstream = 0.0260199 Motif number 11 GACGGTCGCACCGACCGTGCCTGACCGAAG 1 21 1 CCGACCGTGC 0.918735 -280 TCGACGAGCCCGGATCGCGCCGGGCTGGTT 1 117 0 CGGATCGCGC 0.580042 -184 CCGAACAGACCGGACTGAGCTG 1 289 1 CGGACTGAGC 0.941233 -12 CGAGCGCATCCGACTGACCTTATATATCC 5 10 1 CCGACTGACC 0.838732 -85 TGGCGTCACCCTACCCAAGCCGAACGCGAA 9 30 0 CTACCCAAGC 0.335339 -69 CCAACCGAGCGTACCGGGTG 13 1 1 CCAACCGAGC 0.918149 -151 TTCACGAGCGCTGACTACGCGCTGCTCCGG 16 39 1 CTGACTACGC 0.655061 -156 GCACGCGGGGCCGACCAAGCAAAGCTTATG 19 195 0 CCGACCAAGC 0.909959 -106 GCTGGCTCCTCCTACCGTGCACACGTCAAC 19 265 1 CCTACCGTGC 0.468072 -36 CGAAGCGGCCCGGTCTGCGCCGTCCATTGG 24 71 0 CGGTCTGCGC 0.895717 -127 GGCGACGCTACCAACCAACCGGTAGGTTAG 24 138 0 CCAACCAACC 0.494782 -60 AGTCGGTGAACGGTCTGCCCCATAAAGGCT 27 54 0 CGGTCTGCCC 0.705537 -139 GCCGGTTCAACGATCCGAGCATGTGTTTCG 28 142 0 CGATCCGAGC 0.74722 -55 GAAAGCCGATCTGACCGACCCGGAGAAGCA 29 248 0 CTGACCGACC 0.626424 -53 TTGGCGCCTGCCATCTGCGCGCGTGTGATA 30 108 1 CCATCTGCGC 0.776456 -27 GCAAGGACGGCCGACTGCACCGATGTCCCC 31 62 1 CCGACTGCAC 0.675285 -202 GCTTGACCCCGTCTGCCCAGCCGTGCGC 32 9 1 CCGTCTGCCC 0.736087 -44 GGCTACTCGGCCGCCAGCGCACGGCTGGGC 32 25 0 CCGCCAGCGC 0.697279 -28 ACCCTATCTTCGAACCACGCACCTGCGCTA 33 36 0 CGAACCACGC 0.840574 -63 CTTGCTCTATCCACCTGAGCTACGGAGGCG 34 136 0 CCACCTGAGC 0.833329 -165 TCGAAGCGGCCGACCTGCCCCAGATCCGGA 37 159 0 CGACCTGCCC 0.676859 -142 CCAACGCTTTCCGCCCGCGCGAATCGGGGT 40 57 0 CCGCCCGCGC 0.977566 -158 ACATCCAGCCCGGACCGGGCCAAAACCCAG 40 182 0 CGGACCGGGC 0.813957 -33 AAGTGTCCGCCGGACCGCACCGGAAGCAGA 42 136 0 CGGACCGCAC 0.755745 -56 GGGATCAGCGCCGCCTATGCGCGTCCTCTG 44 133 1 CCGCCTATGC 0.611974 -104 GGTGCCGACCTGTGCCGCGTCTCGA 44 222 0 CGACCTGTGC 0.60061 -15 TGTGCTAGCGTACCAAGCAAGTGCTTGC 46 9 1 CGTACCAAGC 0.403247 -46 TGCGGGTTCGCTACCTAAGCAAGCACTTGC 46 27 0 CTACCTAAGC 0.225593 -28 ATAGCCTAATCGGACTACGCGGATCG 48 7 0 CGGACTACGC 0.897577 -294 TCGCAGCTGGCCGAGCAAGCGCTTGGTTGA 48 269 1 CCGAGCAAGC 0.29904 -32 ********** Masking position 1 Map Score: 25.2159 Number of sites scoring better than the average of aligned sites = 14199 Number in coding regions = 13275 Number in noncoding regions = 924 Number of orfs with sites within 600 bp upstream = 657 Fraction of orfs with sites within 600 bp upstream = 0.105525 Motif number 12 CCGAAGGTGTAGAGCGGCGCCATGATGCGAC 1 45 1 AGAGCGCGCC 0.809959 -256 TGGACGTACGCGATCACCGCCGCTGTGCGGC 2 65 1 CGATCACGCC 0.659625 -37 AGGGAGCACAGGATGAGCGCC 4 32 1 GGATGACGCC 0.931216 -11 ACGAGGATCGGGATGGTGGCCTG 6 80 1 GGATGGGGCC 0.907727 -13 CCGGCCAATTGTATGGTCGCCCTATGAGTAG 7 14 1 GTATGGCGCC 0.888591 -30 GCTGCGCTCGGCATCGTCGCCGGCGGTCATG 9 58 0 GCATCGCGCC 0.981969 -41 GCGATGAGGAGGAGCGGCGCAT 9 87 1 GGAGCGCGCA 0.731794 -12 ACACGTAACCGTATCGAGGACTAACTTACTT 11 53 1 GTATCGGGAC 0.356667 -89 GTAAACCCACGGATCGACGTCCTGCGGATCC 14 13 0 GGATCGCGTC 0.967031 -262 ACGATCGTCGAGATCTCCGCCTGAATCATCG 19 13 0 AGATCTCGCC 0.728379 -288 TACCCCCACTGCATCGTCGTCAGCGCGGTCA 20 34 0 GCATCGCGTC 0.893263 -130 CTTGCGCTCTGCATCGTCGTCAGCGCGGTCA 20 121 0 GCATCGCGTC 0.893263 -43 GCTGCGGCGCGCATCGTCGCCCGGATAGGCT 22 19 0 GCATCGCGCC 0.981969 -138 TCCTCCCTTGGGATCGGCGACGCTACCAACC 24 152 0 GGATCGCGAC 0.973072 -46 ATCGTTGAGCGGATGTTCGCACAGCTCGTAG 25 38 0 GGATGTCGCA 0.391436 -149 AGGGCAACCCGTATCGTCACCAATGTCCACG 28 72 1 GTATCGCACC 0.404236 -125 GGCAACGTCCAGGTCGGCGACCGCAATACCG 29 119 1 AGGTCGCGAC 0.42452 -182 CTCGGCGGCGGGATCTACGACGACCGGTCGT 30 47 0 GGATCTCGAC 0.847403 -88 ACCGTAGCAAGGACGGCCGACTGCACCGATG 31 56 1 GGACGGCGAC 0.694212 -208 GGCCAGAGGTGGACCTGCGCCGACCGACGAT 31 223 1 GGACCTCGCC 0.830927 -41 GCCTCGTTATGGGTCGACGCCCAGAGTCGCC 34 253 1 GGGTCGCGCC 0.977074 -48 CCTCTCACGGGGGTCAACGCCGACGGAGATG 43 14 0 GGGTCACGCC 0.889731 -28 CCGTCAACGAGGAGGACGGCCATGTGGTTTG 44 43 1 GGAGGAGGCC 0.312606 -194 ATCAGGTCAGGGATCAGCGCCGCCTATGCGC 44 124 1 GGATCACGCC 0.973067 -113 TACCCCCACCGCATCGTCGTCGACACGGGGC 47 14 0 GCATCGCGTC 0.893263 -51 TGCTGGCGCTGGATGGACGCCTTGCCCGCAC 48 163 0 GGATGGCGCC 0.98621 -138 ****** **** Masking position 9 Map Score: 38.3411 Number of sites scoring better than the average of aligned sites = 6604 Number in coding regions = 6107 Number in noncoding regions = 497 Number of orfs with sites within 600 bp upstream = 398 Fraction of orfs with sites within 600 bp upstream = 0.0639255 Motif number 13 ACAGTTCGATCGTGCGGTTCAGACAAGGGC 1 158 0 CGTGCGGTTC 0.865459 -143 CCAGAGTTGGCCAGCGCTATCCGACGATCA 2 12 1 CCAGCGCTAT 0.468823 -90 GGCGCTCATCCTGTGCTCCCTCTGGTTCT 4 24 0 CCTGTGCTCC 0.66402 -19 CGAGCGCATCCGACTGACCT 5 1 1 CGAGCGCATC 0.701859 -94 GCGACGATGCCGAGCGCAGCGATGAGGAGG 9 69 1 CGAGCGCAGC 0.821818 -30 CAAGGGTGAGCCTGAGGTACACGCGAGGAG 13 115 1 CCTGAGGTAC 0.732568 -37 GCAAATTTCACGAGCGCTGACTACGCGCTG 16 33 1 CGAGCGCTGA 0.620865 -162 CAGGACCATCCCTGACGTGCGCGGTCTTTG 19 235 0 CCTGACGTGC 0.269236 -66 GCGCGGTCATCGAGCGCTACTCCTCCTCAT 20 100 0 CGAGCGCTAC 0.972972 -64 CGAGCGCTACTCCTCCTCAT 20 154 0 CGAGCGCTAC 0.972972 -10 CGTGGCTCGCCCAGCGGTGCCCGCGGGGGC 25 126 0 CCAGCGGTGC 0.905544 -61 CACAAACCGCCCACCGCTACTCGTGACCTA 26 128 1 CCACCGCTAC 0.549168 -173 CACCGCTACTCGTGACCTACGTGGCAGCTG 26 139 1 CGTGACCTAC 0.577137 -162 CGGTGGATGGCGTGTGCTGCATTAAGGGTA 26 207 1 CGTGTGCTGC 0.899539 -94 TAACGCTTTGCCAGCGATTCGCCAGAGAGA 27 25 0 CCAGCGATTC 0.67633 -168 CTCTTCGACCAGCCATTCGTTTTGCCCG 27 175 0 CCAGCCATTC 0.243574 -18 CATCTGCGCGCGTGTGATACTACGGC 30 119 1 CGTGTGATAC 0.63505 -16 TCTGCCCAGCCGTGCGCTGGCGGCCGAGTA 32 22 1 CGTGCGCTGG 0.587821 -31 GAACCACGCACCTGCGCTACCAGCCCCCCT 33 25 0 CCTGCGCTAC 0.971648 -74 ATTAGGGCAGCCTGTGCTAACAGGGGAGGG 33 76 1 CCTGTGCTAA 0.30605 -23 GATAAACTGACCTGCGCATCGCCTCCGTAG 34 117 1 CCTGCGCATC 0.690965 -184 GCTCTATCCACCTGAGCTACGGAGGCGATG 34 133 0 CCTGAGCTAC 0.879678 -168 GTCGCACGTTCGAGTCGTGCCGGGGGCACT 34 183 1 CGAGTCGTGC 0.310112 -118 CCCAGCAAATGGTGCGGTACGCGCAGAACC 37 40 1 GGTGCGGTAC 0.380876 -261 CGGCCTGTATCGGGCGGTCCTCGGTAGTGG 37 118 1 CGGGCGGTCC 0.553237 -183 CGCCGAACCCCGAGAGCTTCCCAGGAGAAA 37 216 0 CGAGAGCTTC 0.760389 -85 GACGGCTGGCCGAGTGCTACCGTCGAACGC 40 26 0 CGAGTGCTAC 0.899193 -189 CACATCTTCACCTGCGAAACATGTTCTTAA 42 94 1 CCTGCGAAAC 0.479265 -98 GGTGCCGCCGCGGGCGATACGCTCCGACCG 44 16 1 CGGGCGATAC 0.70603 -221 TAAAGACGTGCCTAAGCTACCAGCCAGGTC 44 167 0 CCTAAGCTAC 0.167429 -70 TTATCGACACCGGGTGCTGCCAGAGAACTC 44 194 1 CGGGTGCTGC 0.752744 -43 ********** Masking position 1 Map Score: 16.9599 Number of sites scoring better than the average of aligned sites = 9262 Number in coding regions = 8660 Number in noncoding regions = 602 Number of orfs with sites within 600 bp upstream = 489 Fraction of orfs with sites within 600 bp upstream = 0.0785416 Motif number 14 AACCGCGATCCTAGTCACCCGGTTGAACCAGCAAT 5 63 0 CAGCCGGTTG 0.927741 -32 GATACCTTGCCCAACCAACAGGTTGGCCGGGGGCC 22 50 1 CAACAGGTTG 0.963332 -107 CAGGGCAGTGCTAACCTACCGGTTGGTTGGTAGCG 24 128 1 CAACAGGTTG 0.963332 -70 ACCATTCGGGCAAAACGAATGGCTGGTCGAAGAG 27 169 1 CAACAGGCTG 0.918679 -24 GCGCCGCTACCGAAACACATGCTCGGATCGTTGAA 28 132 1 CAACCGCTCG 0.977552 -65 CCACCTCTGGCCTATCACACGGTCGCGCACCGGGT 31 200 0 CTACCGGTCG 0.932498 -64 CAAGGGCCTTCTAATCCCTAGGTCGCACGTTCGAG 34 162 1 CAACCGGTCG 0.989917 -139 TTCACCAATGCAAACCACATGGCCGTCCTCCTCGT 44 49 0 CAACCGGCCG 0.976859 -188 TGCTAGCGTACCAAGCAAGTGCTTGCTTAGGTAGC 46 13 1 CAACAGCTTG 0.920989 -42 AGACTATCAACCAAGCGCTTGCTCGGCCAGCTGCG 48 270 0 CAACCGCTCG 0.977557 -31 * ** * * ***** Masking position 6 Map Score: 10.1135 Number of sites scoring better than the average of aligned sites = 192 Number in coding regions = 170 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 15 TCTGTCCTGAAACCTGAGAGTCTGCGGCGT 1 74 0 AACCTGAGAG 0.733419 -227 GCATCACGAGAACCAGAGGGAGCACAGGAT 4 16 1 AACCAGAGGG 0.875596 -27 CGGTAGGAGGAGCCAGCCAGGACCATCCCT 19 252 0 AGCCAGCCAG 0.733828 -49 AGCCATAGCCATCAAGAGAGGATCCGACG 25 10 0 ATCAAGAGAG 0.590108 -177 GCGCCAGTGTATCCAGCGAGCCGCTCCCGG 26 243 0 ATCCAGCGAG 0.967947 -58 GCCAGCGATTCGCCAGAGAGACCGGGCAAC 27 16 0 CGCCAGAGAG 0.919534 -177 AACCGGCATTAGCCTGAGGGGACGCCATTC 28 165 1 AGCCTGAGGG 0.892436 -32 GCGTGTGCCGTTCCAGCGAGTCACTATGCA 37 70 1 TTCCAGCGAG 0.809494 -231 CCTGCCCCAGATCCGGAGAGCCCGGCAGCC 37 146 0 ATCCGGAGAG 0.903831 -155 GTCACGCGCAATCCAGCGGGTTCGCCGAAC 37 238 0 ATCCAGCGGG 0.968526 -63 CAGCTCAATAATCCAGAGAGGCCGCACGGA 37 277 1 ATCCAGAGAG 0.956251 -24 TGCCAGACTCCGCCGGCGGGCCGTTGCAGA 40 87 0 CGCCGGCGGG 0.873701 -128 TGCACTCCTGCGGGTTCGCTACCT 46 41 0 CTCCTGCGGG 0.872648 -14 ********** Masking position 3 Map Score: 10.3466 Number of sites scoring better than the average of aligned sites = 994 Number in coding regions = 908 Number in noncoding regions = 86 Number of orfs with sites within 600 bp upstream = 78 Fraction of orfs with sites within 600 bp upstream = 0.0125281