AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00340_mtub_reg_100.orf -o00340_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0072 300 hypothetical protein Rv0072 #2 Rv0074 79 hypothetical protein Rv0074 #3 Rv0144 101 hypothetical protein Rv0144 #4 Rv0145 88 hypothetical protein Rv0145 #5 Rv0146 42 hypothetical protein Rv0146 #6 Rv0147 94 hypothetical protein Rv0147 #7 Rv0187 300 hypothetical protein Rv0187 #8 Rv0223c 98 hypothetical protein Rv0223c #9 Rv0224c 35 hypothetical protein Rv0224c #10 Rv0552 77 hypothetical protein Rv0552 #11 menD 42 menD #12 Rv0557 61 hypothetical protein Rv0557 #13 Rv1009 207 hypothetical protein Rv1009 #14 hisD 99 hisD #15 cobG 224 cobG #16 cobL 67 cobL #17 Rv2073c 29 hypothetical protein Rv2073c #18 hisI 126 hisI #19 cobC 300 cobC #20 Rv2294 294 hypothetical protein Rv2294 #21 Rv2581c 50 hypothetical protein Rv2581c #22 Rv2689c 173 hypothetical protein Rv2689c #23 Rv3292 30 hypothetical protein Rv3292 #24 aldB 26 aldB #25 Rv3329 59 hypothetical protein Rv3329 #26 hisC2 300 hisC2 Motif number 1 CACCCGGTGACCGGTGCGAAGTC 1 4 1 CCGGTGACCG 0.884824 -297 CAGTGGGCAACCGGCGGCTCAACCGATATC 1 46 1 CCGGCGGCTC 0.676706 -255 AGGAAACGGTCCGACGGCCAAACGGAATGG 1 136 1 CCGACGGCCA 0.913269 -165 CACCTCGACCGCGGTGCCCACACCAACGAC 1 178 1 GCGGTGCCCA 0.975202 -123 TGTGGTCAGGGCGCGGCCCGCTAGTGGTCG 1 231 0 GCGCGGCCCG 0.902058 -70 TGCCGGGGCAGCGGTGGCGGTTCACACCGC 2 35 1 GCGGTGGCGG 0.847331 -45 TCGTCGGATAGCGCTGGCCAACTCTGGG 3 9 0 GCGCTGGCCA 0.977157 -93 GGCCATGGTTGCGCTGCTGATCGTCGGATA 3 29 0 GCGCTGCTGA 0.953087 -73 TCGCCGCACAGCGGCGGTGATCGCGTACGT 3 68 0 GCGGCGGTGA 0.985504 -34 CCGCCGCTGTGCGGCGAGGAGATCCGAAAC 3 81 1 GCGGCGAGGA 0.987415 -21 CGAGACCTAACCGGCGGCCCCGAAGCGTAG 4 12 1 CCGGCGGCCC 0.78963 -77 GGCGCTCATCCTGTGCTCCCT 5 32 0 GCGCTCATCC 0.558415 -11 CGCTGCACCTGCGGCGACGAATTG 7 5 0 GCGGCGACGA 0.984102 -296 CACTGTGCTGGCGCCGGTGACGCCTACCGC 7 32 0 GCGCCGGTGA 0.983008 -269 CTGACCTGCAGCCACGAGGGCTGTGGCTGT 7 86 0 GCCACGAGGG 0.649078 -215 AACCCCCAGGCCGGTGGGCGGTTGCCTGCT 7 250 1 CCGGTGGGCG 0.929302 -51 CTGCTGGCGCGCGACGGTCGGTGGTCGCGC 7 275 1 GCGACGGTCG 0.928797 -26 GACGCCATGACCGCCGGCGACGATGCCGAG 8 53 1 CCGCCGGCGA 0.724772 -46 CCTCATCGCTGCGCTCGGCATCGTCGCCGG 8 66 0 GCGCTCGGCA 0.764728 -33 GCCGAGCGCAGCGATGAGGAGGAGCGGCGC 8 77 1 GCGATGAGGA 0.877638 -22 ATGCGCCGCTCCTCCTCATCGC 8 87 0 GCGCCGCTCC 0.981516 -12 GCGCGGCCCGGCCATACGGTCC 11 3 1 GCGGCCCGGC 0.546378 -40 ATTTCGACAGCCGGCGCTGACAGT 12 48 1 CCGGCGCTGA 0.953157 -14 GCGCGCCGAGCGGCCCATAACA 13 3 1 GCGCCGAGCG 0.979527 -205 TTGAGCAACTCCGGCGCGCGGGTGTTATGG 13 25 0 CCGGCGCGCG 0.953548 -183 GGGCGGCGGCGCGGTCACGTAG 14 88 0 GCGGCGGCGC 0.500413 -12 CGATAGCGTCGCGGTGTGCCGCGGCGTCCG 15 53 1 GCGGTGTGCC 0.792576 -172 ACGAGCGACCGCGCGGACGCCGCGGCACAC 15 66 0 GCGCGGACGC 0.834506 -159 GGGTTTGAGGGCGCCGAGTCGCTCCACGAG 15 102 0 GCGCCGAGTC 0.858879 -123 CCTCAAACCCGCCACGATGCGCGCAATCGA 15 122 1 GCCACGATGC 0.606488 -103 AATCGAAAACGCCCTGACCCTGATCCTCGG 15 146 1 GCCCTGACCC 0.774897 -79 GGACCTGAGCGCGGCGAGGCGGCGACCCAT 15 186 1 GCGGCGAGGC 0.879765 -39 TCCGCGACGATGCAGAGCGCAGC 16 4 1 GCGACGATGC 0.936191 -64 GCGCAGCGATGCGGTGGGGGTACCGCCCGC 16 27 1 GCGGTGGGGG 0.962706 -41 CGGCGCCGCTCTCCCCCGCAAG 16 56 0 GCGCCGCTCT 0.843235 -12 GCCCTAATGCGCGGCGCGGCGGTGGCGAAC 18 69 1 GCGGCGCGGC 0.509451 -58 CGGCAAGCTCCCGCCGCCCGAGCCATCGGC 19 61 1 CCGCCGCCCG 0.849323 -240 CCGATCGAATGCGCCGCTGCGGCACGTCGC 19 102 1 GCGCCGCTGC 0.675576 -199 TCAACTGACAGCGGCGACGTGCCGCAGCGG 19 115 0 GCGGCGACGT 0.919277 -186 CGGAAGCTCTGCGGTGCGCAGTGTGTGCGT 19 147 0 GCGGTGCGCA 0.971951 -154 CTGTGCCTGGGCGATGAGCACACGGTCGAA 19 195 0 GCGATGAGCA 0.842224 -106 ACGATCATCACCGCCGACGCCCTGTTAGCT 19 237 1 CCGCCGACGC 0.644966 -64 CGTTGTCTACGCGGCGACAACCGCGACATC 19 273 0 GCGGCGACAA 0.68026 -28 CTGTCATTTAGCCGTGGCCGATTTGGGGCT 20 59 1 GCCGTGGCCG 0.825486 -236 TCGTCCGTCGCCGATGGTGCGCGAAAATCA 20 95 0 CCGATGGTGC 0.776134 -200 GGCTCGTTCCGCCGCGATGAAATAACGCCG 20 160 0 GCCGCGATGA 0.812883 -135 TTGGTCGATAGCCCCGGTCGGGCTATGTTC 20 217 1 GCCCCGGTCG 0.831691 -78 GCTATGTTCCCCGGTGTGGCTAGACCAGTT 20 238 1 CCGGTGTGGC 0.621972 -57 GACCAGTTGACCGGTGCGGGACGCGGATAC 20 260 1 CCGGTGCGGG 0.920461 -35 GTTCGCGGCCCGCCTCGTCCCCGG 21 5 1 GCGGCCCGCC 0.915659 -46 TCCCCGGCGTCCGGGGACGAGGCGGGCCGC 21 15 0 CCGGGGACGA 0.810489 -36 TCCCCGGACGCCGGGGATGGGAAACTGGGA 21 28 1 CCGGGGATGG 0.635716 -23 CGATTGACCCGCGCCGGCGACGATGCAGAG 22 22 1 GCGCCGGCGA 0.67454 -152 GCAGAGCAAAGCGATGGGGAGGAGCGGCGC 22 46 1 GCGATGGGGA 0.933041 -128 CGGGTCACTGGCGCCGCTCCTCCCCATCGC 22 56 0 GCGCCGCTCC 0.981516 -118 CCAGTGACCCGCGCCGGCGACGATGCAGAG 22 75 1 GCGCCGGCGA 0.67454 -99 GCAGAGCAAAGCGATGGGGAGGAGCGGCGC 22 99 1 GCGATGGGGA 0.933041 -75 CGGGTCACTGGCGCCGCTCCTCCCCATCGC 22 109 0 GCGCCGCTCC 0.981516 -65 CCAGTGACCCGCGCCGGCGACGATGCAGAG 22 128 1 GCGCCGGCGA 0.67454 -46 GCAGAGCAAAGCGATGGGGAGGAGCGGCGC 22 152 1 GCGATGGGGA 0.933041 -22 TGGCGCCGCTCCTCCCCATCGC 22 162 0 GCGCCGCTCC 0.981516 -12 CCCGAGCCTAGCGCTGCGCTCGCCAACACG 25 22 1 GCGCTGCGCT 0.796368 -38 CTAGTAAAGAGCGCGCCCGAAGAGATTCGA 26 31 1 GCGCGCCCGA 0.591552 -270 CTAAAGGACTGCGGAGGCGAGAGGATTTGA 26 134 1 GCGGAGGCGA 0.794635 -167 CGCTAGGCCTCCGGCGGCTCGGGGAGTCCG 26 254 0 CCGGCGGCTC 0.676706 -47 ********** Masking position 2 Map Score: 122.782 Number of sites scoring better than the average of aligned sites = 66962 Number in coding regions = 62793 Number in noncoding regions = 4169 Number of orfs with sites within 600 bp upstream = 1343 Fraction of orfs with sites within 600 bp upstream = 0.215708 Motif number 2 CCGCGGTCGAGGTGGGGTGGCGGGATCCAT 1 162 0 GGTGGGGTGG 0.695868 -139 CGTTGGTGTGGGCACCGCGGTCGAGGTGGG 1 176 0 GGCACCGCGG 0.852843 -125 ACCACTAGCGGGCCGCGCCCTGACCACAAA 1 233 1 GGCCGCGCCC 0.929247 -68 GGCTAGTTCCGGCCAAGCCGGG 2 3 0 GGCCAAGCCG 0.897755 -77 ACTAGCCACTGCCGGGGCAGCGGTGGCGGT 2 26 1 GCCGGGGCAG 0.931562 -54 CGCAACCATGGCCCAGGTCTGGACGTACGC 3 46 1 GCCCAGGTCT 0.193719 -56 ACCGCCGCTGTGCGGCGAGGAGATCCGAAA 3 80 1 TGCGGCGAGG 0.622112 -22 AGACCTAACCGGCGGCCCCGAAGCGTAGTG 4 14 1 GGCGGCCCCG 0.983799 -75 CCGCTGCACCTGCGGCGACGAATTG 7 6 0 TGCGGCGACG 0.513362 -295 CGTCGCCGCAGGTGCAGCGGTAGGCGTCAC 7 16 1 GGTGCAGCGG 0.755858 -285 ATGCCACTGTGCTGGCGCCGGTGACGCCTA 7 36 0 GCTGGCGCCG 0.968238 -265 GACAGCCACAGCCCTCGTGGCTGCAGGTCA 7 85 1 GCCCTCGTGG 0.683344 -216 GCGGTTGCCTGCTGGCGCGCGACGGTCGGT 7 267 1 GCTGGCGCGC 0.810518 -34 CGCCATGACCGCCGGCGACGATGCCGAGCG 8 55 1 GCCGGCGACG 0.981006 -44 GCAGCGATGAGGAGGAGCGGCGCAT 8 84 1 GGAGGAGCGG 0.927022 -15 ACACCCTACGGCCCGCTAGGCTATCGACCA 9 11 0 GCCCGCTAGG 0.745051 -25 ATTTGGATCTGCCGTGCCCTCGTAATCTCG 10 35 1 GCCGTGCCCT 0.346888 -43 CGGACCGTATGGCCGGGCCGCGC 11 4 0 GGCCGGGCCG 0.986972 -39 GAGTGTCACAGCCGGACCGTATGGCCGGGC 11 16 0 GCCGGACCGT 0.906099 -27 CATTTCGACAGCCGGCGCTGACAGT 12 47 1 GCCGGCGCTG 0.97394 -15 GGGTGTTATGGGCCGCTCGGCGCGC 13 6 0 GGCCGCTCGG 0.953776 -202 ACACCCGCGCGCCGGAGTTGCTCAACATTG 13 30 1 GCCGGAGTTG 0.648713 -178 CTCAACATTGGCCGGTTCGTTACCGTCTTG 13 50 1 GCCGGTTCGT 0.462452 -158 TGATCGAACGGGTGGGGCCTCTAGGTTTCG 13 80 1 GGTGGGGCCT 0.720624 -128 GTTGAGTGTTGCCGAGGTCGGGGATATAGC 13 146 1 GCCGAGGTCG 0.760716 -62 GGCGGCTCCTCTTTGCCGGT 14 1 1 GGCGGCTCCT 0.863162 -99 GGGCGGCGGCGCGGTCACGTAGAC 14 86 0 GGCGGCGCGG 0.998246 -14 GCGACAGGTGGCCGGAGTGGG 15 2 0 GCCGGAGTGG 0.970538 -223 GTCGCGGTGTGCCGCGGCGTCCGCGCGGTC 15 60 1 GCCGCGGCGT 0.916655 -165 GGGCACGAGCGACCGCGCGGACGCCGCGGC 15 70 0 GACCGCGCGG 0.861712 -155 GGTCGCTCGTGCCCGACTCGTGGAGCGACT 15 86 1 GCCCGACTCG 0.583132 -139 CGGGTTTGAGGGCGCCGAGTCGCTCCACGA 15 103 0 GGCGCCGAGT 0.68509 -122 ACCTGAGCGCGGCGAGGCGGCGACCCATTC 15 188 1 GGCGAGGCGG 0.975152 -37 TGCGGGGGAGAGCGGCGCCG 16 58 1 AGCGGCGCCG 0.925931 -10 CCTAATGCGCGGCGCGGCGGTGGCGAACGT 18 71 1 GGCGCGGCGG 0.980179 -56 TTCTCTTGTCGGCCGCCAGTGCCTGGGAGA 19 12 1 GGCCGCCAGT 0.463926 -289 GCGGGAGCTTGCCGAGGCGGTAGTTGATCG 19 45 0 GCCGAGGCGG 0.978709 -256 GAAGCCGATGGCTCGGGCGGCGGGAGCTTG 19 64 0 GCTCGGGCGG 0.908109 -237 GCGGCGACGTGCCGCAGCGGCGCATTCGAT 19 105 0 GCCGCAGCGG 0.980699 -196 GTCAACTGACAGCGGCGACGTGCCGCAGCG 19 116 0 AGCGGCGACG 0.601843 -185 ATGATCGTCAGGCCAAGCAGCTGTGCCTGG 19 215 0 GGCCAAGCAG 0.348985 -86 GATCATCACCGCCGACGCCCTGTTAGCTGC 19 239 1 GCCGACGCCC 0.836595 -62 CGCCGACGCGTTGTCTACGCG 19 290 0 GCCGACGCGT 0.943582 -11 CTGTCATTTAGCCGTGGCCGATTTGGGGCT 20 59 1 GCCGTGGCCG 0.94382 -236 CGAAAATCAGGGCCAAGCCCCAAATCGGCC 20 74 0 GGCCAAGCCC 0.443358 -221 TTGGTCATAGGGCGGCTCGTTCCGCCGCGA 20 173 0 GGCGGCTCGT 0.907783 -122 GGGGAACATAGCCCGACCGGGGCTATCGAC 20 220 0 GCCCGACCGG 0.952888 -75 AACTGGTCTAGCCACACCGGGGAACATAGC 20 238 0 GCCACACCGG 0.340992 -57 AGACCAGTTGACCGGTGCGGGACGCGGATA 20 259 1 ACCGGTGCGG 0.630304 -36 CGGCAGACTAGCCGTATCCGCGTCCCGCAC 20 273 0 GCCGTATCCG 0.573077 -22 GTTCGCGGCCCGCCTCGTCCCCGGACG 21 8 1 GCCCGCCTCG 0.753395 -43 GTCCCCGGACGCCGGGGATGGGAAACTGGG 21 27 1 GCCGGGGATG 0.70224 -24 CTGCATCGTCGCCGGCGCGGGTCAATCGAA 22 20 0 GCCGGCGCGG 0.998502 -154 AAAGCGATGGGGAGGAGCGGCGCCAGTGAC 22 53 1 GGAGGAGCGG 0.927022 -121 CTGCATCGTCGCCGGCGCGGGTCACTGGCG 22 73 0 GCCGGCGCGG 0.998502 -101 AAAGCGATGGGGAGGAGCGGCGCCAGTGAC 22 106 1 GGAGGAGCGG 0.927022 -68 CTGCATCGTCGCCGGCGCGGGTCACTGGCG 22 126 0 GCCGGCGCGG 0.998502 -48 AAAGCGATGGGGAGGAGCGGCGCCA 22 159 1 GGAGGAGCGG 0.927022 -15 GGCCGGAGACTATCGCAACGG 23 2 1 GCCGGAGACT 0.817868 -29 CTATCGCAACGGCAGTGCCGC 23 20 1 GGCAGTGCCG 0.624686 -11 CGAGGTCATTGCCCGAGCCTAGCGCTGCGC 25 11 1 GCCCGAGCCT 0.936632 -49 ATGGAGGCGTGCCAGAGCGGCCGAATGGGG 26 206 0 GCCAGAGCGG 0.949156 -95 CTAGGCCTCCGGCGGCTCGGGGAGTCCGGG 26 252 0 GGCGGCTCGG 0.981076 -49 AGCCGCCGGAGGCCTAGCGTACACAGCCGC 26 265 1 GGCCTAGCGT 0.597421 -36 ********** Masking position 1 Map Score: 106.328 Number of sites scoring better than the average of aligned sites = 62665 Number in coding regions = 59017 Number in noncoding regions = 3648 Number of orfs with sites within 600 bp upstream = 1404 Fraction of orfs with sites within 600 bp upstream = 0.225506 Motif number 3 GTCGATATCGGTTGAGCCGCCGGTTGCCCA 1 49 0 GTTGAGCCGC 0.219951 -252 CGCGGTCGAGGTGGGGTGGCGGGATCCATT 1 161 0 GTGGGGTGGC 0.831482 -140 GTTGGTGTGGGCACCGCGGTCGAGGTGGGG 1 175 0 GCACCGCGGT 0.411474 -126 CTAGCCACTGCCGGGGCAGCGGTGGCGGTT 2 27 1 CCGGGGCAGC 0.813344 -53 TCTCCTCGCCGCACAGCGGCGGTGATCGCG 3 73 0 GCACAGCGGC 0.941569 -29 TCACTACGCTTCGGGGCCGCCGGTTAGGTC 4 15 0 TCGGGGCCGC 0.69469 -74 ACCGCTGCACCTGCGGCGACGAATTG 7 7 0 CTGCGGCGAC 0.894876 -294 GTCGCCGCAGGTGCAGCGGTAGGCGTCACC 7 17 1 GTGCAGCGGT 0.898785 -284 ACCGGCGCCAGCACAGTGGCATGGGACTTC 7 44 1 GCACAGTGGC 0.414457 -257 CCTTGCTGACCTGCAGCCACGAGGGCTGTG 7 91 0 CTGCAGCCAC 0.492574 -210 GCAGGCAACCGCCCACCGGCCTGGGGGTTT 7 249 0 GCCCACCGGC 0.864114 -52 GCCTGCTGGCGCGCGACGGTCGGTGGTCGC 7 273 1 GCGCGACGGT 0.522272 -28 ACGATGCCGAGCGCAGCGATGAGGAGGAGC 8 72 1 GCGCAGCGAT 0.782606 -27 CAGCGATGAGGAGGAGCGGCGCAT 8 85 1 GAGGAGCGGC 0.974587 -14 GGACCGTATGGCCGGGCCGCGC 11 3 0 GCCGGGCCGC 0.518553 -40 CGAAATGGTTGCGTAGCGGCATACGGCGTG 12 24 0 GCGTAGCGGC 0.973803 -38 ACTGTCAGCGCCGGCTGTCGAAATG 12 47 0 CAGCGCCGGC 0.853564 -15 GCGCGCCGAGCGGCCCATAACACC 13 5 1 GCCGAGCGGC 0.922983 -203 GATCGAACGGGTGGGGCCTCTAGGTTTCGG 13 81 1 GTGGGGCCTC 0.621368 -127 GACCGGCAAAGAGGAGCCGCC 14 2 0 GAGGAGCCGC 0.897644 -98 GGGCGGCGGCGCGGTCACGTAGACC 14 85 0 GCGGCGCGGT 0.787217 -15 CCCTCAGAAGGTGTAGCTGCCGATAGCGTC 15 33 1 GTGTAGCTGC 0.179484 -192 GCTGCCGATAGCGTCGCGGTGTGCCGCGGC 15 48 1 GCGTCGCGGT 0.618402 -177 TCGCGGTGTGCCGCGGCGTCCGCGCGGTCG 15 61 1 CCGCGGCGTC 0.945485 -164 CGCGGCGTCCGCGCGGTCGCTCGTGCCCGA 15 72 1 GCGCGGTCGC 0.820046 -153 TGCCCGACTCGTGGAGCGACTCGGCGCCCT 15 95 1 GTGGAGCGAC 0.86979 -130 CTCAGGTCCCGTCGGGAGGCCGAGGATCAG 15 165 0 GTCGGGAGGC 0.448067 -60 CCTGAGCGCGGCGAGGCGGCGACCCATTCT 15 189 1 GCGAGGCGGC 0.948433 -36 ACGATGCAGAGCGCAGCGATGCGGTGGGGG 16 17 1 GCGCAGCGAT 0.782606 -51 TTGCGGGGGAGAGCGGCGCCG 16 57 1 GAGCGGCGCC 0.840783 -11 GCCCTAATGCGCGGCGCGGCGGTGGCGAAC 18 69 1 GCGGCGCGGC 0.555514 -58 GGTGGCGAACGTGTGGCGTCAAACCACCGT 18 89 1 GTGTGGCGTC 0.602795 -38 ATCTCCCAGGCACTGGCGGCCGACAAGAGA 19 13 0 CACTGGCGGC 0.676534 -288 CGGGAGCTTGCCGAGGCGGTAGTTGATCGC 19 44 0 CCGAGGCGGT 0.674311 -257 AAGCCGATGGCTCGGGCGGCGGGAGCTTGC 19 63 0 CTCGGGCGGC 0.938907 -238 CGGCGACGTGCCGCAGCGGCGCATTCGATC 19 104 0 CCGCAGCGGC 0.992066 -197 GGTCAACTGACAGCGGCGACGTGCCGCAGC 19 117 0 CAGCGGCGAC 0.856205 -184 CGCGTTGTCTACGCGGCGACAACCGCGACA 19 275 0 ACGCGGCGAC 0.707793 -26 CCGGGGACGAGGCGGGCCGCGAAC 21 5 0 GGCGGGCCGC 0.396743 -46 AGTTTCCCATCCCCGGCGTCCGGGGACGAG 21 24 0 CCCCGGCGTC 0.81081 -27 TTCGATTGACCCGCGCCGGCGACGATGCAG 22 20 1 CCGCGCCGGC 0.966394 -154 AAGCGATGGGGAGGAGCGGCGCCAGTGACC 22 54 1 GAGGAGCGGC 0.974587 -120 CGCCAGTGACCCGCGCCGGCGACGATGCAG 22 73 1 CCGCGCCGGC 0.966394 -101 AAGCGATGGGGAGGAGCGGCGCCAGTGACC 22 107 1 GAGGAGCGGC 0.974587 -67 CGCCAGTGACCCGCGCCGGCGACGATGCAG 22 126 1 CCGCGCCGGC 0.966394 -48 AAGCGATGGGGAGGAGCGGCGCCA 22 160 1 GAGGAGCGGC 0.974587 -14 GTGTTGGCGAGCGCAGCGCTAGGCTCGGGC 25 21 0 GCGCAGCGCT 0.637639 -39 CCCTAAAGGACTGCGGAGGCGAGAGGATTT 26 132 1 CTGCGGAGGC 0.689838 -169 TGGAGGCGTGCCAGAGCGGCCGAATGGGGC 26 205 0 CCAGAGCGGC 0.885486 -96 ACCCGGACTCCCCGAGCCGCCGGAGGCCTA 26 251 1 CCCGAGCCGC 0.859142 -50 TCGACAGCATATGTGGCGGCTGTGTACGCT 26 280 0 ATGTGGCGGC 0.499066 -21 ********** Masking position 7 Map Score: 79.6625 Number of sites scoring better than the average of aligned sites = 41015 Number in coding regions = 38213 Number in noncoding regions = 2802 Number of orfs with sites within 600 bp upstream = 1206 Fraction of orfs with sites within 600 bp upstream = 0.193704 Motif number 4 TGCGCGTTTGGAGGTCCCTGAGCG 2 66 1 GAGGCCCGAC 0.963369 -14 GGGCCATGGTTGCGCTGCTGATCGTCGGATAGC 3 27 0 TGCGTGCGAC 0.75943 -75 CCCAGGTCTGGACGTACGCGATCACCGCCGCTG 3 57 1 GACGACGGAC 0.784042 -45 TGTGCGGCGAGGAGATCCGAAACG 3 88 1 GGAGTCCAAC 0.568072 -14 AGACCTAACCGGCGGCCCCGAAGCGTAGTGATG 4 14 1 GGCGCCCGAG 0.91149 -75 CCACTGTGCTGGCGCCGGTGACGCCTACCGCTG 7 30 0 GGCGCGGGAG 0.867051 -271 ACGAGGCTGGGACCTTGCTGACCTGCAGCCACG 7 100 0 GACCTGCGAC 0.96007 -201 CGCGACCACCGACCGTCGCGCGCCAGCAGGCAA 7 271 0 GACCTCGGCC 0.582839 -30 GACCGCCGGCGACGATGCCGAGCGCAGCGATGA 8 61 1 GACGTGCGAC 0.989147 -38 CCCGCGCGCCGGAGTTGCTCAACATTGGCCGGT 13 33 1 GGAGTGCCAC 0.449662 -175 AAGCAAAATGGGCCCTCCGAAACCTAGAGGCCC 13 94 0 GGCCTCCAAC 0.693666 -114 CGACCGCGCGGACGCCGCGGCACACCGCGACGC 15 58 0 GACGCGCGCC 0.943392 -167 TGGCGGGTTTGAGGGCGCCGAGTCGCTCCACGA 15 103 0 GAGGCGCGAT 0.49108 -122 GTCCCGTCGGGAGGCCGAGGATCAGGGTCAGGG 15 157 0 GAGGCGAGAC 0.697977 -68 TCCGCGACGATGCAGAGCGCAGCGATGC 16 6 1 GACGTGCGAC 0.989147 -62 GTGGTCGAAGGAGGCAGCCGAAC 18 1 0 GAGGAGCGAC 0.808212 -126 TGCGCGGCGCGGCGGTGGCGAACGTGTGGCGTC 18 76 1 GGCGTGGGAC 0.983586 -51 CCAGTGCCTGGGAGATCGCGATCAACTACCGCC 19 27 1 GGAGTCGGAC 0.869664 -274 CGGGCGGCGGGAGCTTGCCGAGGCGGTAGTTGA 19 48 0 GAGCTGCGAG 0.49604 -253 GATCGAATGCGCCGCTGCGGCACGTCGCCGCTG 19 104 1 GCCGTGCGCC 0.769629 -197 GCGCACCGCAGAGCTTCCGGATCACCATCGACA 19 158 1 GAGCTCCGAC 0.870831 -143 ACAGGGCGTCGGCGGTGATGATCGTCAGGCCAA 19 229 0 GGCGTGAGAC 0.892749 -72 CGGGGACGAGGCGGGCCGCGAAC 21 1 0 GCGGCCGGAC 0.713781 -50 TCCCATCCCCGGCGTCCGGGGACGAGGCGGGCC 21 17 0 GGCGCCGGGC 0.747365 -34 CCCGGACGCCGGGGATGGGAAACTGGGAACC 21 30 1 GGGGTGGAAC 0.677004 -21 CCGCGCCGGCGACGATGCAGAGCAAAGCGATGG 22 30 1 GACGTGCGAC 0.989147 -144 GGGGAGGAGCGGCGCCAGTGACCCGCGCCGGCG 22 61 1 GGCGCAGGAC 0.873153 -113 CCGCGCCGGCGACGATGCAGAGCAAAGCGATGG 22 83 1 GACGTGCGAC 0.989147 -91 GGGGAGGAGCGGCGCCAGTGACCCGCGCCGGCG 22 114 1 GGCGCAGGAC 0.873153 -60 CCGCGCCGGCGACGATGCAGAGCAAAGCGATGG 22 136 1 GACGTGCGAC 0.989147 -38 TCGCCAACACGACGACACGAAACCTTTGG 25 41 1 GACGCACAAC 0.486517 -19 GAGAGGATTTGAACCTCCGGTCCCCTTGAAGGG 26 152 1 GAACTCCGTC 0.106957 -149 AGTCCATGGAGGCGTGCCAGAGCGGCCGAATGG 26 208 0 GGCGGCCGAC 0.90488 -93 GAGAGTACCCGGACTCCCCGAGCCGCCGGAGGC 26 245 1 GGACCCCGAC 0.798244 -56 **** *** ** * Masking position 1 Map Score: 47.7886 Number of sites scoring better than the average of aligned sites = 20378 Number in coding regions = 19219 Number in noncoding regions = 1159 Number of orfs with sites within 600 bp upstream = 759 Fraction of orfs with sites within 600 bp upstream = 0.121908 Motif number 5 CCTTCACCTGCACACCCAACCACAAGCTAGTCG 1 86 1 CCCCAACCAC 0.786212 -215 TCCCGCCACCCCACCTCGACCGCGGTGCCCACA 1 167 1 CCTCGACCGC 0.903912 -134 ACGACTACCACCACCCCGAACGCCTCTTCGACC 1 203 1 CCCCGAACGC 0.983223 -98 CACGCGGTGTGAACCGCCACCGCTGCCCCGGCA 2 35 0 GCGCCACCGC 0.936853 -45 CAGGGACCTCCAAACGCGCACGCGGTGTGAACC 2 53 0 CCGCGCACGC 0.966849 -27 CGTCGGATAGCGCTGGCCAACTCTGGG 3 5 0 CGGCCAACTC 0.601997 -97 CAGGTCTGGACGTACGCGATCACCGCCGCTGTG 3 59 1 CCGCGATCAC 0.886344 -43 CGGTAGGCGTCACCGGCGCCAGCACAGTGGCAT 7 33 1 CGGCGCCAGC 0.693448 -268 GACTTCGATGCGAACCCGACAGCCACAGCCCTC 7 68 1 CCCCGACAGC 0.964685 -233 ACCACCGACCGTCGCGCGCCAGCAGGCAACCGC 7 267 0 GCGCGCCAGC 0.60604 -34 ACGCTAGCGCGACCACCGACCGTCGC 7 285 0 CCGCGACCAC 0.970932 -16 GTCACCCTACCCAAGCCGAACGCGAAACGAGAA 8 23 0 CGCCGAACGC 0.906991 -76 CCGCCGGCGACGATGCCGAGCGCAGCGATGAGG 8 63 1 CGCCGAGCGC 0.647444 -36 CAATTTGGATCTGCCGTGCCCTCGTAATCTCGA 10 33 1 CCGTGCCCTC 0.435738 -45 CAACGCGCTATATCCCCGACCTCGGCAACACTC 13 149 0 TCCCGACCTC 0.837156 -59 CAAACTTCATCAGACCCAATCACCG 13 193 1 CCCCAATCAC 0.461961 -15 GGGAGAATGGTCTACGTGACCGCGCCGCCGCCC 14 77 1 TCGTGACCGC 0.585138 -23 CTCCGGCCACCTGTCGCGCCCTCAGAAGGTGTA 15 15 1 CCGCGCCCTC 0.949105 -210 TCGCGGTGTGCCGCGGCGTCCGCGCGGTCGCTC 15 61 1 CGGCGTCCGC 0.771215 -164 ACGAGTCGGGCACGAGCGACCGCGCGGACGCCG 15 74 0 CAGCGACCGC 0.864701 -151 ACGATGCGCGCAATCGAAAACGCCCTGACCCTG 15 135 1 CCGAAAACGC 0.227717 -90 CAAGCGGGCGGTACCCCCACCGCATCGCTGCGC 16 27 0 GCCCCACCGC 0.914054 -41 CGGCGCCGCTCTCCCCCGCAAGCGGGCGGTACC 16 45 0 CCCCGCAAGC 0.76241 -23 TGACGCCACACGTTCGCCACCGCCGCGCCGCGC 18 77 0 CCGCCACCGC 0.99243 -50 AGGCGGTAGTTGATCGCGATCTCCCAGGCACTG 19 28 0 TCGCGATCTC 0.626075 -273 CGGCTTCTTACGTGCCCGATCGAATGCGCCGCT 19 87 1 CCCCGATCGA 0.625713 -214 TACGCGGCGACAACCGCGACATCACAGGCAGCT 19 263 0 CCGCGACATC 0.889177 -38 AAATCAGGGCCAAGCCCCAAATCGGCCACGGCT 20 68 0 CCCCCAAATC 0.500033 -227 CGGCCCGCCTCGTCCCCGGACGCCGGGGATGGG 21 16 1 CCCCGGACGC 0.800766 -35 CTGGCGCCGCTCCTCCCCATCGCTTTGCTCTGC 22 46 0 TCCCCATCGC 0.750642 -128 CTGGCGCCGCTCCTCCCCATCGCTTTGCTCTGC 22 99 0 TCCCCATCGC 0.750642 -75 TGGCGCCGCTCCTCCCCATCGCTTTGCTCTGC 22 152 0 TCCCCATCGC 0.750642 -22 GGCCGGAGACTATCGCAACGGCAGTGCCGC 23 10 1 CCGCAACGGC 0.608535 -21 CCTAGCGCTGCGCTCGCCAACACGACGACACGA 25 28 1 CCGCCAACAC 0.85312 -32 GCGCTCTTTACTAGCGCAAACGCGTTCCGTTGG 26 12 0 CCGCAAACGC 0.926232 -289 GGTTCAAATCCTCTCGCCTCCGCAGTCCTTTAG 26 134 0 CCGCCTCCGC 0.914514 -167 CTAGCGTACACAGCCGCCACATATGCTGTCGAC 26 278 1 CCGCCACATA 0.14564 -23 * ********* Masking position 13 Map Score: 51.6551 Number of sites scoring better than the average of aligned sites = 21796 Number in coding regions = 20505 Number in noncoding regions = 1291 Number of orfs with sites within 600 bp upstream = 802 Fraction of orfs with sites within 600 bp upstream = 0.128815 Motif number 6 GCCATGGTTGCGCTGCTGATCGTCGGATAGC 3 27 0 CGCTGCGATC 0.868284 -75 CATGGGACTTCGATGCGAACCCGACAGCCAC 7 63 1 CGATGCAACC 0.697943 -238 CCGCCGGCGACGATGCCGAGCGCAGCGATGA 8 63 1 CGATGCGAGC 0.997615 -36 CCGAGCGCAGCGATGAGGAGGAGCGGCGCAT 8 78 1 CGATGAGAGG 0.954311 -21 ACGAACCGGCCAATGTTGAGCAACTCCGGCG 13 39 0 CAATGTGAGC 0.698834 -169 TCCGCGACGATGCAGAGCGCAGCGATGC 16 8 1 CGATGCGAGC 0.997615 -60 CAGAGCGCAGCGATGCGGTGGGGGTACCGCC 16 23 1 CGATGCGTGG 0.954483 -45 GAATGGATGTCGATGGTGATCCGGAAGCTCT 19 167 0 CGATGGGATC 0.968542 -134 CGTCCGTCGCCGATGGTGCGCGAAAATCAGG 20 93 0 CGATGGGCGC 0.974792 -202 GCGCCGGCGACGATGCAGAGCAAAGCGATGG 22 32 1 CGATGCGAGC 0.997615 -142 CAGAGCAAAGCGATGGGGAGGAGCGGCGCCA 22 47 1 CGATGGGAGG 0.992648 -127 GCGCCGGCGACGATGCAGAGCAAAGCGATGG 22 85 1 CGATGCGAGC 0.997615 -89 CAGAGCAAAGCGATGGGGAGGAGCGGCGCCA 22 100 1 CGATGGGAGG 0.992648 -74 GCGCCGGCGACGATGCAGAGCAAAGCGATGG 22 138 1 CGATGCGAGC 0.997615 -36 CAGAGCAAAGCGATGGGGAGGAGCGGCGCCA 22 153 1 CGATGGGAGG 0.992648 -21 ****** **** Masking position 4 Map Score: 42.8026 Number of sites scoring better than the average of aligned sites = 671 Number in coding regions = 586 Number in noncoding regions = 85 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 7 CTTATATATCCGGATATATGGCTGGATCTTT 6 29 1 CGGAATATGG 0.679959 -66 CTGGTTCAACCGGGTGACTAGGATCGCGGTT 6 67 1 CGGGGACTAG 0.974157 -28 ATACCCTATACGGGTATCTGGTAAACCCCCA 7 227 1 CGGGATCTGG 0.974398 -74 TTGCCGAGGTCGGGGATATAGCGCGTTGACT 13 154 1 CGGGATATAG 0.842971 -54 TGAGCTGCTCTGGGAGAATGGTCTACGTGAC 14 66 1 TGGGGAATGG 0.935257 -34 GTCCACCGTACGGGAGAATGGGTCGCCGCCT 15 202 0 CGGGGAATGG 0.99262 -23 GATGAGCACACGGTCGAATGGATGTCGATGG 19 182 0 CGGTGAATGG 0.949235 -119 ATAGCCCGACCGGGGCTATCGACCAATCACG 20 212 0 CGGGCTATCG 0.881773 -83 CGTCCCGCACCGGTCAACTGGTCTAGCCACA 20 252 0 CGGTAACTGG 0.932788 -43 TCCGGCAGACTAGCCGTATCCGC 20 282 0 CGGCGACTAG 0.890456 -13 ACGCCGGGGATGGGAAACTGGGAACC 21 35 1 TGGGAACTGG 0.914689 -16 GTCGCCGGCGCGGGTCAATCGAAGATGCCCC 22 12 0 CGGGCAATCG 0.950042 -162 GTCGCCGGCGCGGGTCACTGGCGCCGCTCCT 22 65 0 CGGGCACTGG 0.992156 -109 GTCGCCGGCGCGGGTCACTGGCGCCGCTCCT 22 118 0 CGGGCACTGG 0.992156 -56 CGTGCCAGAGCGGCCGAATGGGGCTCACTGC 26 198 0 CGGCGAATGG 0.966581 -103 **** ****** Masking position 9 Map Score: 25.7145 Number of sites scoring better than the average of aligned sites = 945 Number in coding regions = 855 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 94 Fraction of orfs with sites within 600 bp upstream = 0.015098 Motif number 8 CGGGATCCATTCCGTTTGGCCGTCGGACCG 1 142 0 TCCGTTTGGC 0.495431 -159 CAGGGCGCGGCCCGCTAGTGGTCGAAGAGG 1 225 0 CCCGCTAGTG 0.326496 -76 CCCGGCTTGGCCGGAACTAGC 2 2 1 CCGGCTTGGC 0.902349 -78 GGCACATCACTACGCTTCGGGGCCGCCGGT 4 21 0 TACGCTTCGG 0.385271 -68 GCTGTGGCTGTCGGGTTCGCATCGAAGTCC 7 67 0 TCGGGTTCGC 0.243691 -234 TCACCCTCATCCGTGTCGGGGATCCCCGAG 7 148 1 CCGTGTCGGG 0.698945 -153 GGTCGGTGGTCGCGCTAGCGT 7 290 1 CGCGCTAGCG 0.728922 -11 GAACACGTTCTCGTTTCGCGTTCGGCTTGG 8 16 1 TCGTTTCGCG 0.309868 -83 CGTTTCGCGTTCGGCTTGGGTAGGGTGACG 8 27 1 TCGGCTTGGG 0.87362 -72 TCCTCATCGCTGCGCTCGGCATCGTCGCCG 8 67 0 TGCGCTCGGC 0.895152 -32 CACCCTACGGCCCGCTAGGCTATCGACCA 9 10 0 CCCGCTAGGC 0.925576 -26 CAACACGTTCTAGTCTTGCCAG 10 3 0 TAGTCTTGCC 0.219865 -75 GAAGGATCACTACGCTTGGAGCCC 10 64 1 TACGCTTGGA 0.167551 -14 GGCCCGGCCATACGGTCCGGCTGTGACACT 11 15 1 TACGGTCCGG 0.394255 -28 GGTGTTATGGGCCGCTCGGCGCGC 13 5 0 GCCGCTCGGC 0.848265 -203 GCCCATAACACCCGCGCGCCGGAGTTGCTC 13 23 1 CCCGCGCGCC 0.718716 -185 CGCGCTCAGGTCCCGTCGGGAGGCCGAGGA 15 169 0 TCCCGTCGGG 0.536119 -56 GAATGGGTCGCCGCCTCGCCGCGCTCAGGT 15 188 0 CCGCCTCGCC 0.737595 -37 GGGGGTACCGCCCGCTTGCGGGGGAGAGCG 16 42 1 CCCGCTTGCG 0.924384 -26 CGGCGCCGCTCTCCCCCGCAAGCGGG 16 52 0 CGCTCTCCCC 0.292803 -16 TCACGCTAGCGCAGGCAATAA 17 2 1 CACGCTAGCG 0.767955 -28 CAGGAATAACTAGGGTAGCCTAACCTATAT 18 33 1 TAGGGTAGCC 0.248033 -94 TTTGACGCCACACGTTCGCCACCGCCGCGC 18 82 0 CACGTTCGCC 0.566837 -45 CGATCAACTACCGCCTCGGCAAGCTCCCGC 19 45 1 CCGCCTCGGC 0.788936 -256 ATCGTTTTTTTCGTCTAGCGATTCCTCGGC 20 134 1 TCGTCTAGCG 0.495584 -161 ATCGACCAATCACGCTTGCACAGTTGGTCA 20 196 0 CACGCTTGCA 0.189603 -99 GGTCGATAGCCCCGGTCGGGCTATGTTCCC 20 219 1 CCCGGTCGGG 0.941102 -76 ACCGGTCAACTGGTCTAGCCACACCGGGGA 20 245 0 TGGTCTAGCC 0.172729 -50 GTATCCGCGTCCCGCACCGGTCAACTGGTC 20 260 0 CCCGCACCGG 0.338412 -35 CCGCCTCGTCCCCGGACGCCGGGGATGGGA 21 20 1 CCCGGACGCC 0.404429 -31 TGCATCGTCGCCGGCGCGGGTCAATCGAAG 22 19 0 CCGGCGCGGG 0.539543 -155 TGCATCGTCGCCGGCGCGGGTCACTGGCGC 22 72 0 CCGGCGCGGG 0.539543 -102 TGCATCGTCGCCGGCGCGGGTCACTGGCGC 22 125 0 CCGGCGCGGG 0.539543 -49 GCCGTTGCGATAGTCTCCGGCC 23 3 0 TAGTCTCCGG 0.247897 -28 AGCGCAGCGCTAGGCTCGGGCAATGACCTC 25 12 0 TAGGCTCGGG 0.887944 -48 AGCCTAGCGCTGCGCTCGCCAACACGACGA 25 26 1 TGCGCTCGCC 0.865565 -34 ACCAACGGAACGCGTTTGCGCTAGTAAAGA 26 11 1 CGCGTTTGCG 0.244885 -290 GCCTCCGCAGTCCTTTAGGGGACACAACTG 26 122 0 TCCTTTAGGG 0.176668 -179 GAGGTTCAAATCCTCTCGCCTCCGCAGTCC 26 139 0 TCCTCTCGCC 0.845843 -162 GATTTGAACCTCCGGTCCCCTTGAAGGGGG 26 157 1 TCCGGTCCCC 0.585599 -144 GGAGTCCGGGTACTCTCGGGAAGTCCATGG 26 232 0 TACTCTCGGG 0.716499 -69 TAGGCCTCCGGCGGCTCGGGGAGTCCGGGT 26 251 0 GCGGCTCGGG 0.806276 -50 GGCGGCTGTGTACGCTAGGCCTCCGGCGGC 26 266 0 TACGCTAGGC 0.711272 -35 ********** Masking position 8 Map Score: 35.5954 Number of sites scoring better than the average of aligned sites = 37647 Number in coding regions = 34402 Number in noncoding regions = 3245 Number of orfs with sites within 600 bp upstream = 1332 Fraction of orfs with sites within 600 bp upstream = 0.213942 Motif number 9 CAAACGGAATGGATCCCGCCACCCCACCTCG 1 154 1 GATCCCGCCA 0.726576 -147 CCACACCAACGACTACCACCACCCCGAACGC 1 195 1 GCTACCACCA 0.605591 -106 CGCACGCGGTGTGAACCGCCACCGCTGCCCC 2 39 0 GGAACCGCCA 0.980574 -41 CGGTGATAACCGCGATCCTAGTCAC 6 80 0 GTAACCGCGA 0.846387 -15 GGATTCCTCGGGGATCCCCGACACGGATGAG 7 153 0 GGATCCCCGA 0.6556 -148 CGGGTATCTGGTAAACCCCCAGGCCGGTGGG 7 237 1 GAAACCCCCA 0.83775 -64 CGCGCCAGCAGGCAACCGCCCACCGGCCTGG 7 255 0 GCAACCGCCC 0.989084 -46 GGACGCCGCGGCACACCGCGACGCTATCGGC 15 51 0 GACACCGCGA 0.705011 -174 GGTGTGCCGCGGCGTCCGCGCGGTCGCTCGT 15 65 1 GCGTCCGCGC 0.804925 -160 GATGCGGTGGGGGTACCGCCCGCTTGCGGGG 16 34 1 GGTACCGCCC 0.943586 -34 ATTCTCTTGTCGGCCGCCAGTGCCTGGGA 19 9 1 GCGGCCGCCA 0.812032 -292 CTACCGCCTCGGCAAGCTCCCGCCGCCCGAG 19 52 1 GCAAGCTCCC 0.57297 -249 TCTACGCGGCGACAACCGCGACATCACAGGC 19 267 0 GCAACCGCGA 0.982519 -34 GAAAATCAGGGCCAAGCCCCAAATCGGCCAC 20 72 0 GCAAGCCCCA 0.82413 -223 AGCGGCGCCAGTGACCCGCGCCGGCGACGAT 22 68 1 GGACCCGCGC 0.949102 -106 AGCGGCGCCAGTGACCCGCGCCGGCGACGAT 22 121 1 GGACCCGCGC 0.949102 -53 CACAACTGAAGACAAGCGCCCGTAGCTCAAC 26 99 0 GCAAGCGCCC 0.953216 -202 * ********* Masking position 1 Map Score: 14.9752 Number of sites scoring better than the average of aligned sites = 5606 Number in coding regions = 5174 Number in noncoding regions = 432 Number of orfs with sites within 600 bp upstream = 380 Fraction of orfs with sites within 600 bp upstream = 0.0610344 Motif number 10 CTGGGCCATGGTTGCGCTGCTGATCGTCGG 3 32 0 GTTGCGCTGC 0.926633 -70 TCCTCATCGCTGCGCTCGGCATCGTCGCCG 8 67 0 TGCGCTCGGC 0.959635 -32 ACCGCATCGCTGCGCTCTGCATCGTCGCGG 16 12 0 TGCGCTCTGC 0.984855 -56 TCCCCATCGCTTTGCTCTGCATCGTCGCCG 22 36 0 TTTGCTCTGC 0.989542 -138 TCCCCATCGCTTTGCTCTGCATCGTCGCCG 22 89 0 TTTGCTCTGC 0.989542 -85 TCCCCATCGCTTTGCTCTGCATCGTCGCCG 22 142 0 TTTGCTCTGC 0.989542 -32 ********** Masking position 5 Map Score: 7.04877 Number of sites scoring better than the average of aligned sites = 60 Number in coding regions = 27 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 11 CTTGTGGTTGGGTGTGCAGGTGAAGGTGAG 1 82 0 GGTGTGCAGG 0.922252 -219 ACCGTTTCCTTGTCTGCCAGCCTTTCCCGA 1 116 0 TGTCTGCCAG 0.906601 -185 ACAAGGAAACGGTCCGACGGCCAAACGGAA 1 133 1 GGTCCGACGG 0.840694 -168 CTACGCTTCGGGGCCGCCGGTTAGGTCTCG 4 12 0 GGGCCGCCGG 0.926611 -77 GGATATATAAGGTCAGTCGGATGCGCTCG 6 10 0 GGTCAGTCGG 0.886909 -85 CGTGGCTGCAGGTCAGCAAGGTCCCAGCCT 7 100 1 GGTCAGCAAG 0.881495 -201 GTCAGCTGTCGGTAATCCAGAACAGCTACT 7 190 1 GGTAATCCAG 0.453745 -111 CGGGCCGTAGGGTGTGCCAG 9 26 1 GGTGTGCCAG 0.980556 -10 ATAGCGTCGCGGTGTGCCGCGGCGTCCGCG 15 55 1 GGTGTGCCGC 0.9015 -170 GTGTCAGCCAGCCAAGTCACG 18 116 0 TGTCAGCCAG 0.89093 -11 GGATGTCGATGGTGATCCGGAAGCTCTGCG 19 164 0 GGTGATCCGG 0.908944 -137 GGATACGGCTAGTCTGCCGGA 20 284 1 AGTCTGCCGG 0.910983 -11 AGTCCATGGAGGCGTGCCAGAGCGGCCGAA 26 211 0 GGCGTGCCAG 0.89645 -90 ********** Masking position 2 Map Score: 9.75349 Number of sites scoring better than the average of aligned sites = 5599 Number in coding regions = 5203 Number in noncoding regions = 396 Number of orfs with sites within 600 bp upstream = 317 Fraction of orfs with sites within 600 bp upstream = 0.0509155 Motif number 12 CCTTCACCTGCACACCCAACCACAAGCTAG 1 86 1 CACACCCAAC 0.650013 -215 CCCGCCACCCCACCTCGACCGCGGTGCCCA 1 168 1 CACCTCGACC 0.867092 -133 CGACTACCACCACCCCGAACGCCTCTTCGA 1 204 1 CACCCCGAAC 0.96902 -97 ACGCGGTGTGAACCGCCACCGCTGCCCCGG 2 37 0 AACCGCCACC 0.973226 -43 AGGGACCTCCAAACGCGCACGCGGTGTGAA 2 55 0 AAACGCGCAC 0.461453 -25 CGGTGATAACCGCGATCCTAGTCACCC 6 78 0 AACCGCGATC 0.865622 -17 TTCCTCGGGGATCCCCGACACGGATGAGGG 7 151 0 ATCCCCGACA 0.479498 -150 GCCAGCAGGCAACCGCCCACCGGCCTGGGG 7 253 0 AACCGCCCAC 0.905281 -48 CAACCACCTACACAGCGAACAAAAAGCAAA 13 120 0 CACAGCGAAC 0.846791 -88 AACGCGCTATATCCCCGACCTCGGCAACAC 13 151 0 ATCCCCGACC 0.902277 -57 CGCCGCGGCACACCGCGACGCTATCGGCAG 15 49 0 CACCGCGACG 0.87409 -176 AAGCGGGCGGTACCCCCACCGCATCGCTGC 16 29 0 TACCCCCACC 0.756511 -39 ACCACGCACACACTGCGCACCGCAGAGCTT 19 144 1 CACTGCGCAC 0.700317 -157 TGACGATCATCACCGCCGACGCCCTGTTAG 19 235 1 CACCGCCGAC 0.817927 -66 ACGCGGCGACAACCGCGACATCACAGGCAG 19 265 0 AACCGCGACA 0.86766 -36 GACTAGCCGTATCCGCGTCCCGCACCGGTC 20 268 0 ATCCGCGTCC 0.617951 -27 AAGAGATTCGAACTCCCAACCTTCTGATCC 26 50 1 AACTCCCAAC 0.595788 -251 ********** Masking position 6 Map Score: 8.68683 Number of sites scoring better than the average of aligned sites = 9548 Number in coding regions = 8979 Number in noncoding regions = 569 Number of orfs with sites within 600 bp upstream = 477 Fraction of orfs with sites within 600 bp upstream = 0.0766142 Motif number 13 CGCGAAACGAGAACGTGTTCCATTA 8 6 0 GAACGTGTTC 0.922766 -93 GGCAAGACTAGAACGTGTTGCAATTTGGAT 10 13 1 GAACGTGTTG 0.973998 -65 GTCACAGCCGGACCGTATGGCCGGGCCGCG 11 12 0 GACCGTATGG 0.908143 -31 TCTTGTGATCGAACGGGTGGGGCCTCTAGG 13 75 1 GAACGGGTGG 0.972085 -133 CGCGCCCTCAGAAGGTGTAGCTGCCGATAG 15 29 1 GAAGGTGTAG 0.806678 -196 CGGCGGTGGCGAACGTGTGGCGTCAAACCA 18 85 1 GAACGTGTGG 0.991225 -42 ACATCCATTCGACCGTGTGCTCATCGCCCA 19 188 1 GACCGTGTGC 0.969809 -113 ********** Masking position 2 Map Score: 5.34794 Number of sites scoring better than the average of aligned sites = 338 Number in coding regions = 311 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 14 TTGCCCACTGGTCGATATGGTGGACTTCGC 1 26 0 GTCGATATGG 0.940173 -275 AGGTGAGTTTGTCGATATCGGTTGAGCCGC 1 59 0 GTCGATATCG 0.961238 -242 GGGCACCGCGGTCGAGGTGGGGTGGCGGGA 1 167 0 GTCGAGGTGG 0.827916 -134 CCCTACCCAAGCCGAACGCGAAACGAGAAC 8 22 0 GCCGAACGCG 0.833537 -77 TGGTCGATAGCCTAGCGGGCCG 9 3 1 GTCGATAGCC 0.890858 -33 AGCGCCGGCTGTCGAAATGGTTGCGTAGCG 12 36 0 GTCGAAATGG 0.86225 -26 GTTGAGTGTTGCCGAGGTCGGGGATATAGC 13 146 1 GCCGAGGTCG 0.912962 -62 AGCAGCTCAAGTCGATATCTGACCGGTACA 14 45 0 GTCGATATCT 0.792552 -55 AGGTGTAGCTGCCGATAGCGTCGCGGTGTG 15 41 1 GCCGATAGCG 0.9793 -184 CACGTAAGAAGCCGATGGCTCGGGCGGCGG 19 71 0 GCCGATGGCT 0.8385 -230 TTTAGCCGTGGCCGATTTGGGGCTTGGCCC 20 65 1 GCCGATTTGG 0.872785 -230 AGCGTGATTGGTCGATAGCCCCGGTCGGGC 20 210 1 GTCGATAGCC 0.890858 -85 TGCCAGAGCGGCCGAATGGGGCTCACTGCT 26 197 0 GCCGAATGGG 0.790599 -104 ********** Masking position 5 Map Score: 12.1845 Number of sites scoring better than the average of aligned sites = 4430 Number in coding regions = 4192 Number in noncoding regions = 238 Number of orfs with sites within 600 bp upstream = 193 Fraction of orfs with sites within 600 bp upstream = 0.030999 Motif number 15 CACCCGGTGACCGGTGCGAAGTCCACCA 1 9 1 GACCGGTGCG 0.992564 -292 CCACCATATCGACCAGTGGGCAACCGGCGG 1 33 1 GACCAGTGGG 0.960825 -268 GCATCACGAGAACCAGAGGGAGCACAGGAT 5 16 1 AACCAGAGGG 0.773125 -27 TAAACCCCCAGGCCGGTGGGCGGTTGCCTG 7 248 1 GGCCGGTGGG 0.988889 -53 CGCGACCACCGACCGTCGCGCGCCAGCAGG 7 274 0 GACCGTCGCG 0.871486 -27 TAGCCTAGCGGGCCGTAGGGTGTGCCAG 9 18 1 GGCCGTAGGG 0.925182 -18 CTTGTGATCGAACGGGTGGGGCCTCTAGGT 13 76 1 AACGGGTGGG 0.701697 -132 CGCGACAGGTGGCCGGAGTGGG 15 3 0 GGCCGGAGTG 0.920282 -222 CTCCCGACGGGACCTGAGCGCGGCGAGGCG 15 177 1 GACCTGAGCG 0.921023 -48 AACATAGCCCGACCGGGGCTATCGACCAAT 20 216 0 GACCGGGGCT 0.871483 -79 TAGACCAGTTGACCGGTGCGGGACGCGGAT 20 258 1 GACCGGTGCG 0.992564 -37 CCTTCAAGGGGACCGGAGGTTCAAATCCTC 26 154 0 GACCGGAGGT 0.956746 -147 ********** Masking position 3 Map Score: 15.7218 Number of sites scoring better than the average of aligned sites = 2719 Number in coding regions = 2524 Number in noncoding regions = 195 Number of orfs with sites within 600 bp upstream = 188 Fraction of orfs with sites within 600 bp upstream = 0.030196