AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00360_mtub_reg_300.orf -o00360_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 aspC 30 aspC #2 Rv0338c 108 hypothetical protein Rv0338c #3 Rv0339c 185 hypothetical protein Rv0339c #4 mmpS2 173 mmpS2 #5 hemA 49 hemA #6 Rv0858c 156 hypothetical protein Rv0858c #7 fadA3 52 fadA3 #8 Rv1075c 300 hypothetical protein Rv1075c #9 fdxC 212 fdxC #10 Rv1178 32 hypothetical protein Rv1178 #11 hisD 99 hisD #12 Rv2054 75 hypothetical protein Rv2054 #13 cobC 300 cobC #14 amiA2 61 amiA2 #15 scoA 82 scoA #16 fadD35 115 fadD35 #17 ltp1 32 ltp1 #18 Rv2792c 201 hypothetical protein Rv2792c #19 Rv2795c 144 hypothetical protein Rv2795c #20 Rv2798c 130 hypothetical protein Rv2798c #21 glnA4 159 glnA4 #22 map 41 map #23 Rv2862c 300 hypothetical protein Rv2862c #24 rpsB 283 rpsB #25 gatC 84 gatC #26 Rv3137 300 hypothetical protein Rv3137 #27 fadE24 79 fadE24 #28 Rv3174 92 hypothetical protein Rv3174 #29 Rv3545c_fadA5 111 Rv3545c: hypothetical protein Rv3545c, fadA5: fadA5 #30 fadD3 47 fadD3 #31 hisC2 300 hisC2 Motif number 1 CGCCTCCTTGCCCCACCCCCGTTAGTCCCG 3 15 1 CCCCACCCCC 0.822221 -171 GCACCGAACACGGACGCGGCCTCAACCGAT 3 60 0 CGGACGCGGC 0.892739 -126 GGTGCGGAACCCGCCGGCCCCGGGGCGCCG 3 85 1 CCGCCGGCCC 0.567922 -101 CATCCCCTAACGGCGCCCCGGGGCCGGCGG 3 95 0 CGGCGCCCCG 0.834615 -91 CCAGCCCGTCCCGCAGCCCCGCATTTCCCC 3 134 0 CCGCAGCCCC 0.963699 -52 CTCACCATAGCCCCAGCCCGTCCCGCAGCC 3 146 0 CCCCAGCCCG 0.89025 -40 GGCTGGTCGGCGGCGGCTCCCTCACCA 3 169 0 CGGCGGCGGC 0.987213 -17 TCGTGTTCCGCCCATCGCGCGGACCTAGTG 4 152 0 CCCATCGCGC 0.53275 -22 CACCCTAACAGGGCCCCCGGCCAACCTGTT 6 82 1 GGGCCCCCGG 0.716925 -75 CAAGGTATCGCTGCGGCGCGCATCGTCGCC 6 119 1 CTGCGGCGCG 0.961739 -38 CGGCGCGCATCGTCGCCCGGATAGGCTCGA 6 132 1 CGTCGCCCGG 0.951676 -25 GACGGCTCCCGGCATGGACAAG 7 41 0 CGGCTCCCGG 0.969817 -12 GCCTTCAACACGTCGCGCGGCGAAATGACA 8 21 1 CGTCGCGCGG 0.767991 -280 GTAAGGTATCCGGCTCACCCAGAGTTGTCA 8 46 0 CGGCTCACCC 0.923316 -255 TGTGACGAAGCGGCTGAGCCTCTGGCTCAG 8 127 1 CGGCTGAGCC 0.898731 -174 GCAGCATAGACGGCAAGCCGGATTGCTATG 9 15 1 CGGCAAGCCG 0.582777 -198 CCAAGGCTTCCTCCGGGCCCTGCTGAGGCA 9 135 0 CTCCGGGCCC 0.739042 -78 GCCGGCTGGGGGCAGCACCCGC 10 3 1 CGGCTGGGGG 0.671751 -30 GGGGCAGCACCCGCTCGCGGCGGA 10 19 1 CCGCTCGCGG 0.5233 -14 GGGCGGCGGCGCGGTCACGTAGA 11 87 0 CGGCGGCGCG 0.963901 -13 GTGACGCCAACGTCTGCGGGCTAGGCCCGA 12 14 1 CGTCTGCGGG 0.912789 -62 GGCCCGAGTTCCTCGGGGGCGGACATCGAG 12 37 1 CCTCGGGGGC 0.786876 -39 ATTCTCTTGTCGGCCGCCAGTGCCTGGGAG 13 11 1 CGGCCGCCAG 0.683282 -290 CGGCAAGCTCCCGCCGCCCGAGCCATCGGC 13 61 1 CCGCCGCCCG 0.854951 -240 ATCGAATGCGCCGCTGCGGCACGTCGCCGC 13 105 1 CCGCTGCGGC 0.978715 -196 CACGCACACACTGCGCACCGCAGAGCTTCC 13 146 1 CTGCGCACCG 0.848229 -155 ACGATCATCACCGCCGACGCCCTGTTAGCT 13 237 1 CCGCCGACGC 0.904814 -64 CGCCGACGCGTTGTCTACGC 13 291 0 CGCCGACGCG 0.690739 -10 ACTATCGGCGCGGATACCCGCGATGTCGTG 14 32 0 CGGATACCCG 0.704873 -30 CCTAGACGCACCGCGGGGGCAATGGTATTC 15 15 1 CCGCGGGGGC 0.775233 -68 ACCGCAGAGCCTCCTAGCATT 15 72 0 CCGCAGAGCC 0.719932 -11 CCCGGCTCCTCCTCACCCCG 18 1 0 CCTCACCCCG 0.788903 -201 CGTCCCGGACCGCATCCCCCTACATTGAGG 18 50 0 CGCATCCCCC 0.736573 -152 ACACGGCCTACGTCGCACGGCGATGGGCCG 18 101 1 CGTCGCACGG 0.766115 -101 CTGTTCAATTCGGAAGGGGCTGTCAGCTGT 18 131 1 CGGAAGGGGC 0.656154 -71 GCTTTTGCGTCTGCTCGGCCAACCTAGCCC 19 16 0 CTGCTCGGCC 0.832023 -129 GTTCGACCAACCGCTACGGCGTGAGCAGAC 19 78 0 CCGCTACGGC 0.827851 -67 TTCGTTCCCACTTCGCCGGGTCGTTAGGGT 19 117 1 CTTCGCCGGG 0.737462 -28 GTCGGCTCCGCGTCGTCACAGT 20 3 1 CGGCTCCGCG 0.978059 -128 GCGGTAGTTCCCGCTGACGCATAATGTGAT 20 82 1 CCGCTGACGC 0.927548 -49 GTCTACTCGCCGGCTCCGGCGGTTCGCGGT 21 66 1 CGGCTCCGGC 0.979803 -94 TGGCTGTCGCGGGCACCGCGAACCGCCGGA 21 80 0 GGGCACCGCG 0.518662 -80 CATCTATAGGCTCCGGGCCCACATGCTGGC 21 106 0 CTCCGGGCCC 0.739042 -54 CAAATTTTGGCCGCGCCCGGCTA 22 4 0 CCGCGCCCGG 0.849994 -38 GCCCCTGTCTCGTCGGGCCGTGACGCAAAG 23 29 1 CGTCGGGCCG 0.801163 -272 ACAACGTCCCCTGCGCACCGCCCAGGAATT 23 68 0 CTGCGCACCG 0.848229 -233 CTCGAGCTGCCTGAGCCCCGCTTGACGCAG 23 106 1 CTGAGCCCCG 0.860435 -195 GACATCTGCTGGGCTGCGGCTTGCTGCCGG 23 149 1 GGGCTGCGGC 0.733023 -152 GCTGCCGGAACGCCTCCCGCTCTTCGTCGG 23 171 1 CGCCTCCCGC 0.946418 -130 CGGCGAACTTCGCCTACCCCCCGCAACTTA 23 248 0 CGCCTACCCC 0.671663 -53 TCGCCGCCGCCCGTTTTGTGGAC 24 4 1 CCGCCGCCCG 0.854951 -280 GCTGTGGATTCCGCTGCCGGGAAAATCACC 24 43 1 CCGCTGCCGG 0.977077 -241 CGGCGCAGCTCGCATCGGCGGGCTGACTTC 24 95 1 CGCATCGGCG 0.524294 -189 CGTGTCTGCACCGCGGCCCGCCTTTCCGGG 24 126 1 CCGCGGCCCG 0.878786 -158 CATGCTGTTGCGGATCCCGGAAAGGCGGGC 24 141 0 CGGATCCCGG 0.954005 -143 CGCCGCGGGACCGCCCCGGCATGCTGTTGC 24 160 0 CCGCCCCGGC 0.965009 -124 CCGAAGGGAACCGCCGCGGGACCGCCCCGG 24 171 0 CCGCCGCGGG 0.953251 -113 GCCGCGATGCCGGACCCGGGAGGAAATCCC 24 200 0 CGGACCCGGG 0.905847 -84 CGGGCCCTGGCGTCTGCCGCGATGCCGGAC 24 215 0 CGTCTGCCGC 0.925538 -69 CCGGCATCGGCTGAAGCCGGGCCCTGGCGT 24 232 0 CTGAAGCCGG 0.698106 -52 CCGGCTTCAGCCGATGCCGGGCGAACAACC 24 242 1 CCGATGCCGG 0.951478 -42 CACGGCGTTTCGGCAGCCGGCGTCGGCCGT 25 39 1 CGGCAGCCGG 0.981652 -46 AATGGGTGGCCGGACGGCCGACGCCGGCTG 25 52 0 CGGACGGCCG 0.686021 -33 TGGTGACATACTGCTGGCCGCCTGCGTCCG 26 30 1 CTGCTGGCCG 0.846749 -271 CGGAGTCAGCCCGCGACCGGACGCAGGCGG 26 47 0 CCGCGACCGG 0.836636 -254 CCAGATCTCCCCGCGGGCCGCGCGGGATAA 26 99 1 CCGCGGGCCG 0.501622 -202 GCTACTCATACTGATCGCGGTCCTAGCGGT 26 146 0 CTGATCGCGG 0.703026 -155 AAACTCCCATCCCACCCGGCCATGGTAGGA 26 181 1 CCCACCCGGC 0.526016 -120 GGGGTGATAGCGGACCACCCTATCTTACTC 27 42 0 CGGACCACCC 0.627968 -38 CGCTATCACCCCGATGACCGAGGCTGCCGT 27 60 1 CCGATGACCG 0.742969 -20 GTTCGAATCTCTTCGGGCGCGCTCTTTACT 31 33 0 CTTCGGGCGC 0.662796 -268 CCCTAAAGGACTGCGGAGGCGAGAGGATTT 31 132 1 CTGCGGAGGC 0.766462 -169 AGGCCTCCGGCGGCTCGGGGAGTCCGGGTA 31 250 0 CGGCTCGGGG 0.611612 -51 ********** Masking position 1 Map Score: 118.891 Number of sites scoring better than the average of aligned sites = 89687 Number in coding regions = 84210 Number in noncoding regions = 5477 Number of orfs with sites within 600 bp upstream = 1520 Fraction of orfs with sites within 600 bp upstream = 0.244137 Motif number 2 GGACAGCCTTTCTCGCGGCGAAAGTCGCAC 2 25 1 TCTCGCGGCG 0.928922 -84 CACCGAACACGGACGCGGCCTCAACCGATA 3 59 0 GGACGCGGCC 0.798626 -127 ACGGCGCCCCGGGGCCGGCGGGTTCCGCAC 3 86 0 GGGGCCGGCG 0.973313 -100 CCCCAGCCCGTCCCGCAGCCCCGCATTTCC 3 136 0 TCCCGCAGCC 0.939587 -50 CCCTCACCATAGCCCCAGCCCGTCCCGCAG 3 148 0 AGCCCCAGCC 0.836032 -38 ATGGTGAGGGAGCCGCCGCCGACCAGCC 3 168 1 AGCCGCCGCC 0.494252 -18 GTTCCGCCCATCGCGCGGACCTAGTGACCC 4 148 0 TCGCGCGGAC 0.84205 -26 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 6 84 1 GCCCCCGGCC 0.980178 -73 CGACGATGCGCGCCGCAGCGATACCTTGCC 6 117 0 CGCCGCAGCG 0.762786 -40 GCGCGCATCGTCGCCCGGATAGGCTCGACC 6 134 1 TCGCCCGGAT 0.457494 -23 GACGGCTCCCGGCATGGACAAGAC 7 39 0 GCTCCCGGCA 0.743887 -14 CTTCAACACGTCGCGCGGCGAAATGACAAC 8 23 1 TCGCGCGGCG 0.985129 -278 GCTGAGCCAGAGGCTCAGCCGCTTCGTCAC 8 128 0 AGGCTCAGCC 0.644739 -173 GCTGAGCCTCTGGCTCAGCCAACCCCGCGA 8 139 1 TGGCTCAGCC 0.822419 -162 CTTTTTTAGGTGCCACAGCCAAAGAGTCTG 8 184 1 TGCCACAGCC 0.769933 -117 CCGGGCAGCATAGACGGCAA 9 1 1 CCGGGCAGCA 0.702502 -212 ACTTGGCACATGCGTCGGCGTACACGGTCA 9 60 0 TGCGTCGGCG 0.883198 -153 CCGAACGCATTGCCTCAGCAGGGCCCGGAG 9 125 1 TGCCTCAGCA 0.589161 -88 TGCCTCAGCAGGGCCCGGAGGAAGCCTTGG 9 135 1 GGGCCCGGAG 0.89493 -78 AGCGGGTGCTGCCCCCAGCCGGC 10 4 0 GCCCCCAGCC 0.936657 -29 GGCAGCACCCGCTCGCGGCGGA 10 21 1 GCTCGCGGCG 0.951037 -12 GGGCGGCGGCGCGGTCACGTA 11 89 0 GGCGGCGGCG 0.503332 -11 CTCGGGCCTAGCCCGCAGACGTTGGCGTCA 12 15 0 GCCCGCAGAC 0.704482 -61 CGAGTTCCTCGGGGGCGGACATCGAGGCTG 12 41 1 GGGGGCGGAC 0.822141 -35 TCTCCCAGGCACTGGCGGCCGACAAGAGAA 13 12 0 ACTGGCGGCC 0.637742 -289 GATCAACTACCGCCTCGGCAAGCTCCCGCC 13 46 1 CGCCTCGGCA 0.72822 -255 AGCCGATGGCTCGGGCGGCGGGAGCTTGCC 13 62 0 TCGGGCGGCG 0.967015 -239 AGCGGCGACGTGCCGCAGCGGCGCATTCGA 13 106 0 TGCCGCAGCG 0.891634 -195 CGCTGCGGCACGTCGCCGCTGTCAGTTGAC 13 116 1 CGTCGCCGCT 0.581918 -185 CGCACACACTGCGCACCGCAGAGCTTCCGG 13 148 1 GCGCACCGCA 0.588857 -153 CAGCTAACAGGGCGTCGGCGGTGATGATCG 13 238 0 GGCGTCGGCG 0.87139 -63 ATGTCGCGGTTGTCGCCGCGTAGACAACGC 13 274 1 TGTCGCCGCG 0.844491 -27 GCGTAGACAACGCGTCGGCG 13 291 1 CGCGTCGGCG 0.842564 -10 CAATAGTTTTGCACCCCGCCACGACATCGC 14 13 1 GCACCCCGCC 0.815362 -49 ACGAGACTATCGGCGCGGATACCCGCGATG 14 37 0 CGGCGCGGAT 0.677541 -25 AGAATACCATTGCCCCCGCGGTGCGTCTAG 15 16 0 TGCCCCCGCG 0.931512 -67 GCGGTAGGCACCAGGCGGAGGAACC 16 101 1 CCAGGCGGAG 0.45766 -15 TCCAACCGAATCGCCCGGCTCCTCCTCACC 18 14 0 TCGCCCGGCT 0.892422 -188 GGATGCGGTCCGGGACGGCAACGGTGGCAC 18 63 1 CGGGACGGCA 0.637023 -139 ACGGCCTACGTCGCACGGCGATGGGCCGCT 18 103 1 TCGCACGGCG 0.915731 -99 ACCACCCTAACGACCCGGCGAAGTGGGAAC 19 120 0 CGACCCGGCG 0.939833 -25 GTCGGCTCCGCGTCGTCACAGT 20 3 1 CGGCTCCGCG 0.901328 -128 CATCACATTATGCGTCAGCGGGAACTACCG 20 83 0 TGCGTCAGCG 0.728414 -48 GCGAACCGCCGGAGCCGGCGAGTAGACGCG 21 63 0 GGAGCCGGCG 0.896968 -97 TGGCTGTCGCGGGCACCGCGAACCGCCGGA 21 80 0 GGGCACCGCG 0.889636 -80 GCCAGCATGTGGGCCCGGAGCCTATAGATG 21 106 1 GGGCCCGGAG 0.89493 -54 TAGCCGGGCGCGGCCAAAATTTGCC 22 6 1 GGGCGCGGCC 0.822175 -36 GAGTTCTTTGCGTCACGGCCCGACGAGACA 23 34 0 CGTCACGGCC 0.722781 -267 AACGTCCCCTGCGCACCGCCCAGGAATTGC 23 66 0 GCGCACCGCC 0.827044 -235 AGGCAGCTCGAGGCACAGCGACAACGTCCC 23 88 0 AGGCACAGCG 0.618639 -213 GAGCCCCGCTTGACGCAGCCAGTTACTGAG 23 118 1 TGACGCAGCC 0.825694 -183 TCCGGCAGCAAGCCGCAGCCCAGCAGATGT 23 150 0 AGCCGCAGCC 0.821024 -151 CGGGAGGCGTTCCGGCAGCAAGCCGCAGCC 23 160 0 TCCGGCAGCA 0.672322 -141 GCTGTTGAAAGGCCGCCGAAAACCTAGCAG 23 216 0 GGCCGCCGAA 0.497987 -85 AACTTCGCCTACCCCCCGCAACTTACCGCT 23 243 0 ACCCCCCGCA 0.600734 -58 CCGAGAGTTCTGGCACGGCTTCAACGGCGA 23 272 0 TGGCACGGCT 0.738151 -29 CCACAAAACGGGCGGCGGCGA 24 2 0 GGCGGCGGCG 0.503332 -282 TGGTGATTTTCCCGGCAGCGGAATCCACAG 24 44 0 CCCGGCAGCG 0.912076 -240 TAGTTTACACCGACCCAGCTGGTGATTTTC 24 63 0 CGACCCAGCT 0.471761 -221 GTAAACTACTCGGCGCAGCTCGCATCGGCG 24 85 1 CGGCGCAGCT 0.856149 -199 ACACGCGAAGTCAGCCCGCCGATGCGAGCT 24 101 0 TCAGCCCGCC 0.563372 -183 TCCCGGAAAGGCGGGCCGCGGTGCAGACAC 24 127 0 GCGGGCCGCG 0.942826 -157 GCCGCGGGACCGCCCCGGCATGCTGTTGCG 24 159 0 CGCCCCGGCA 0.799154 -125 GCCGGGGCGGTCCCGCGGCGGTTCCCTTCG 24 170 1 TCCCGCGGCG 0.924395 -114 GGTCCGGCATCGCGGCAGACGCCAGGGCCC 24 214 1 CGCGGCAGAC 0.522419 -70 GCAGACGCCAGGGCCCGGCTTCAGCCGATG 24 228 1 GGGCCCGGCT 0.942535 -56 TGTCGGTTGTTCGCCCGGCATCGGCTGAAG 24 246 0 TCGCCCGGCA 0.908297 -38 TTCGGCAGCCGGCGTCGGCCGTCCGGCCAC 25 47 1 GGCGTCGGCC 0.842455 -38 GCGACCGGACGCAGGCGGCCAGCAGTATGT 26 35 0 GCAGGCGGCC 0.890929 -266 GTGACCGGAGTCAGCCCGCGACCGGACGCA 26 52 0 TCAGCCCGCG 0.622476 -249 GCTGGCCAGATCTCCCCGCGGGCCGCGCGG 26 94 1 TCTCCCCGCG 0.755897 -207 GCGGCTTATCCCGCGCGGCCCGCGGGGAGA 26 104 0 CCGCGCGGCC 0.983327 -197 GCGCGGGATAAGCCGCGGAGCAAGAAATAC 26 118 1 AGCCGCGGAG 0.726288 -183 AACTCCCATCCCACCCGGCCATGGTAGGAC 26 182 1 CCACCCGGCC 0.903339 -119 CACTGAGTTCACGCTCGGCGTAATAACGGC 26 223 0 ACGCTCGGCG 0.858914 -78 CACTGGGTACACGCTCGGCGAAAGGATGGT 26 275 1 ACGCTCGGCG 0.858914 -26 CAAATCCTCTCGCCTCCGCAGTCCTTTAGG 31 133 0 CGCCTCCGCA 0.635753 -168 ACGCTAGGCCTCCGGCGGCTCGGGGAGTCC 31 255 0 TCCGGCGGCT 0.849012 -46 CGACAGCATATGTGGCGGCTGTGTACGCTA 31 279 0 TGTGGCGGCT 0.593927 -22 ********** Masking position 6 Map Score: 120.485 Number of sites scoring better than the average of aligned sites = 69513 Number in coding regions = 65126 Number in noncoding regions = 4387 Number of orfs with sites within 600 bp upstream = 1420 Fraction of orfs with sites within 600 bp upstream = 0.228076 Motif number 3 GAAAGGCTGTCCTAACCTACCGGTCG 2 5 0 CCTAACTCCG 0.294431 -104 CTAATGCGGCCATCCCCTAACGGCGCCCCGGG 3 103 0 CATCCCTACG 0.327418 -83 CGTCCCGCAGCCCCGCATTTCCCCTAATGCGG 3 126 0 CCCCGCTTCC 0.820345 -60 CGGCGGCTCCCTCACCATAGCCCCAGCCCGTC 3 154 0 CTCACCTGCC 0.639421 -32 ATTTCACGTACCCAGCTTTGCGCGTACCGGT 4 10 0 CCCAGCTGCG 0.945739 -164 CCTCGTGTTCCGCCCATCGCGCGGACCTAGT 4 153 0 CCGCCCTGCG 0.82297 -21 GGCAGCACCACCTGGCCAGCTCCCTCG 5 33 0 CACCACTGCC 0.924656 -17 GCGCCGCAGCGATACCTTGCCCAACCAACAGG 6 106 0 GATACCTCCC 0.317665 -51 TACGTGCCTTCAACACGTCGCGCGGCGAAATG 8 16 1 CAACACTGCG 0.653232 -285 TGCAGTCATGCCCAACACTTCCTACGCCGTTG 8 80 1 CCCAACCTCC 0.325579 -221 CTCTGGCTCAGCCAACCCCGCGAACTTAGCTT 8 146 1 GCCAACCGCG 0.758751 -155 ACATTTGGTCCACACCGTGACGGGTTTGTTCG 8 224 1 CACACCTACG 0.57702 -77 ATCAGTAACCGAACGCATTGCCTCAGCAGGGC 9 117 1 GAACGCTGCC 0.701479 -96 GGGCCCGGAGGAAGCCTTGGCGAGGTGGACAG 9 145 1 GAAGCCTGCG 0.721817 -68 GGACAGCAGCCCACACATAGCGGTATCTGGAA 9 171 1 CCACACTGCG 0.78547 -42 CTGGGGGCAGCACCCGCTCGCGGCGGA 10 16 1 CACCCGTGCG 0.456417 -17 TGGTCTACGTGACCGCGCCGCCGCCC 11 84 1 GACCGCCGCC 0.831663 -16 TCTCTTGTCGGCCGCCAGTGCCTGGGAGATCG 13 13 1 GCCGCCGGCC 0.824837 -288 GCCTCGGCAAGCTCCCGCCGCCCGAGCCATCG 13 57 1 GCTCCCCGCC 0.744592 -244 AGTTGACCACGCACACACTGCGCACCGCAGAG 13 139 1 GCACACCGCG 0.496806 -162 TGCACCCCGCCACGACATCGCGGGTATCCGCG 14 22 1 CACGACTGCG 0.886331 -40 ATACCATTGCCCCCGCGGTGCGTCTAGGGACC 15 11 0 CCCCGCGGCG 0.836054 -72 AACCGAATCGCCCGGCTCCTCCTCACCCCG 18 9 0 CCCGGCCTCC 0.483771 -193 TGCCGTCCCGGACCGCATCCCCCTACATTGAG 18 51 0 GACCGCTCCC 0.758396 -151 AGCCCAGTGTGCCACCGTTGCCGTCCCGGACC 18 69 0 GCCACCTGCC 0.961917 -133 CGTCTGCTCGGCCAACCTAGCCCAACTG 19 7 0 GCCAACTGCC 0.906851 -138 AGACGCAAAAGCCCCCATTTCGGGCCCGAAAT 19 34 1 GCCCCCTTCG 0.868852 -111 AGACGCAAAAGCCCCCATTTCGGGCCCGAAAT 19 50 0 GCCCCCTTCG 0.868852 -95 TGCGTCTGCTCACGCCGTAGCGGTTGGTCGAA 19 75 1 CACGCCTGCG 0.95295 -70 TGGATTTCGTTCCCACTTCGCCGGGTCGTTAG 19 112 1 TCCCACTGCC 0.582665 -33 CACTTCCTCCCACACCATGGCCGCTAGTCAAC 21 136 0 CACACCTGCC 0.939727 -24 CCCGCTAGCTTAGCCGGGCAAATTT 22 27 0 GCTAGCTGCC 0.717382 -15 GAGGCACAGCGACAACGTCCCCTGCGCACCGC 23 77 0 GACAACTCCC 0.506691 -224 GCTGCCTGAGCCCCGCTTGACGCAGCCAGTTA 23 111 1 CCCCGCTACG 0.757218 -190 GTTCCGGCAGCAAGCCGCAGCCCAGCAGATGT 23 150 0 CAAGCCCGCC 0.501098 -151 CTTGCTGCCGGAACGCCTCCCGCTCTTCGTCG 23 168 1 GAACGCTCCG 0.325146 -133 GGCTTCAACGGCGAACTTCGCCTACCCCCCGC 23 254 0 GCGAACTGCC 0.422103 -47 GCATCGGCGGGCTGACTTCGCGTGTCTGCACC 24 106 1 GCTGACTGCG 0.688158 -178 TGCACCGCGGCCCGCCTTTCCGGGATCCGCAA 24 132 1 CCCGCCTCCG 0.889748 -152 TCCTCCCGGGTCCGGCATCGCGGCAGACGCCA 24 206 1 TCCGGCTGCG 0.569938 -78 CATCGCGGCAGACGCCAGGGCCCGGCTTCAGC 24 221 1 GACGCCGGCC 0.707877 -63 ACGATGTATCCACGGCGTTTCGGCAGCCGGCG 25 29 1 CACGGCTTCG 0.598806 -56 CCAGCAGTATGTCACCATCGCCGGGATCATCA 26 15 0 GTCACCTGCC 0.596788 -286 TGCCAGCAGTCCTACCATGGCCGGGTGGGATG 26 188 0 CCTACCTGCC 0.840932 -113 CTGTTTACAACACCCCTTAGCGCGTGTACCGT 28 29 1 CACCCCTGCG 0.969591 -64 GCCAGTAAAACATGCCTTCACCGCAGACAAAA 29 66 0 CATGCCTACC 0.236194 -46 ****** * *** Masking position 11 Map Score: 42.0518 Number of sites scoring better than the average of aligned sites = 31197 Number in coding regions = 29453 Number in noncoding regions = 1744 Number of orfs with sites within 600 bp upstream = 976 Fraction of orfs with sites within 600 bp upstream = 0.156762 Motif number 4 GAGGCCGCGTCCGTGTTCGGTGCGGAACCC 3 67 1 CCGTGTTCGG 0.397726 -119 ACCCAGCTTTGCGCGTACCGGT 4 3 0 GCGCGTACCG 0.840474 -171 GTCAACGGTAGCGTCTACGCTAGCTAACGC 4 59 1 GCGTCTACGC 0.719852 -115 GCGCATGCTCACGGGATCAG 8 291 0 GCGCATGCTC 0.52827 -10 ATCCGGCTTGCCGTCTATGCTGCCCGG 9 8 0 CCGTCTATGC 0.424832 -205 TGCATATTGACCGTGTACGCCGACGCATGT 9 53 1 CCGTGTACGC 0.933203 -160 TCCGCCGCGAGCGGGTGCTGCCCCCAGCCG 10 13 0 GCGGGTGCTG 0.855891 -20 GGCGGCTCCTCTTTGCCGGTC 11 2 1 GCGGCTCCTC 0.785388 -98 GGGCGGCGGCGCGGTCACGTAG 11 88 0 GCGGCGGCGC 0.591334 -12 ATCCATTCGACCGTGTGCTCATCGCCCAGG 13 190 1 CCGTGTGCTC 0.922871 -111 ACGATCATCACCGCCGACGCCCTGTTAGCT 13 237 1 CCGCCGACGC 0.409788 -64 GACTATCGGCGCGGATACCCGCGATGTCGT 14 33 0 GCGGATACCC 0.658134 -29 CCCCCGCGGTGCGTCTAGGGACC 15 4 0 GCGTCTAGGG 0.608757 -79 CCAGCATGAGTCGTGTACGGAGACCGTC 16 9 0 TCGTGTACGG 0.54795 -107 ACCGAATCGCCCGGCTCCTCCTCACCCCG 18 10 0 CCGGCTCCTC 0.672499 -192 GCGACGTAGGCCGTGTAGCCCAGTGTGCCA 18 87 0 CCGTGTAGCC 0.542647 -115 GGGGGCTTTTGCGTCTGCTCGGCCAACCTA 19 20 0 GCGTCTGCTC 0.962179 -125 GGGGGCTTTTGCGTCTGCTCACGCCGTAGC 19 66 1 GCGTCTGCTC 0.962179 -79 ATCACATTATGCGTCAGCGGGAACTACCGC 20 82 0 GCGTCAGCGG 0.578374 -49 ATGTTCTTTTGCGCCTACTCGCG 21 4 0 GCGCCTACTC 0.924411 -156 ATGTTCTTTCGCGTCTACTCGCCGGCTCCG 21 54 1 GCGTCTACTC 0.961664 -106 ACGGCGAACTTCGCCTACCCCCCGCAACTT 23 249 0 TCGCCTACCC 0.541164 -52 CCGGGCCCTGGCGTCTGCCGCGATGCCGGA 24 216 0 GCGTCTGCCG 0.930849 -68 ACGGCCGACGCCGGCTGCCGAAACGCCGTG 25 39 0 CCGGCTGCCG 0.830408 -46 ATTACGCCGAGCGTGAACTCAGTGCAAGAA 26 229 1 GCGTGAACTC 0.66137 -72 CTTTCGCCGAGCGTGTACCCAGTGCGATTT 26 269 0 GCGTGTACCC 0.963057 -32 ACCCCTTAGCGCGTGTACCGTCAAAGCACA 28 40 1 GCGTGTACCG 0.919219 -53 CCAACGGAACGCGTTTGCGCTAGTAAAGAG 31 12 1 GCGTTTGCGC 0.61121 -289 CTCGGGGAGTCCGGGTACTCTCGGGAAGTC 31 237 0 CCGGGTACTC 0.888718 -64 TATGTGGCGGCTGTGTACGCTAGGCCTCCG 31 271 0 CTGTGTACGC 0.35621 -30 ********** Masking position 3 Map Score: 31.5191 Number of sites scoring better than the average of aligned sites = 7523 Number in coding regions = 6800 Number in noncoding regions = 723 Number of orfs with sites within 600 bp upstream = 521 Fraction of orfs with sites within 600 bp upstream = 0.0836813 Motif number 5 ACTCAATGGAACCCCTGCATAACCTGCTCATCC 2 63 0 ACCCTGCTAC 0.28658 -46 GAACCCGCCGGCCCCGGGGCGCCGTTAGGGGAT 3 91 1 GCCCGGGCGC 0.959429 -95 CCTCACCATAGCCCCAGCCCGTCCCGCAGCCCC 3 144 0 GCCCAGCCGC 0.828972 -42 TGGTGAGGGAGCCGCCGCCGACCAGCC 3 169 1 GCCGCGCGAC 0.757768 -17 CCCTAACAGGGCCCCCGGCCAACCTGTTGGTTG 6 84 1 GCCCCGGCAC 0.801856 -73 GCAAGGTATCGCTGCGGCGCGCATCGTCGCCCG 6 118 1 GCTGGGCCGA 0.51772 -39 CGAAATGACAACTCTGGGTGAGCCGGATACCTT 8 41 1 ACTCGGGGAC 0.834494 -260 AGCGGCTGAGCCTCTGGCTCAGCCAACCCCGCG 8 135 1 CCTCGGCCAC 0.738169 -166 TCCGGGCCCTGCTGAGGCAATGCGTTCGGTTAC 9 121 0 GCTGGGCATC 0.324532 -92 CTATGTGTGGGCTGCTGTCCACCTCGCCAAGGC 9 158 0 GCTGTGTCAC 0.258156 -55 GACTTGAGCTGCTCTGGGAGAATGGTCTACGTG 11 62 1 GCTCGGGGAT 0.243893 -38 CCCCCGAGGAACTCGGGCCTAGCCCGCAGACGT 12 23 0 ACTCGGCTAC 0.551517 -53 CGAATGCGCCGCTGCGGCACGTCGCCGCTGTCA 13 107 1 GCTGGGCCGC 0.875394 -194 TGTGCTCATCGCCCAGGCACAGCTGCTTGGCCT 13 203 1 GCCCGGCCAC 0.556845 -98 ATAGTTTTGCACCCCGCCACGACATCGCGGGTA 14 15 1 ACCCGCCCGC 0.752772 -47 GAATACCATTGCCCCCGCGGTGCGTCTAGGGAC 15 12 0 GCCCCGCGTC 0.562461 -71 TCCGTACACGACTCATGCTGGACACTTCGGTTA 16 18 1 ACTCTGCGGC 0.786204 -98 GAATCGCCCGGCTCCTCCTCACCCCG 18 4 0 GCTCTCCCAC 0.64672 -198 CCAGTGTGCCACCGTTGCCGTCCCGGACCGCAT 18 65 0 ACCGTGCGTC 0.489695 -137 TCCGAATTGAACAGCGGCCCATCGCCGTGCGAC 18 112 0 ACAGGGCCAC 0.62093 -90 GTCGGCTCCGCGTCGTCACAGTCAAAC 20 5 1 GCTCGCGCGC 0.703992 -126 AACTTGTTCTAACCCGGGCCACCTTTGATGCGG 20 41 1 AACCGGGCAC 0.184384 -90 CATGATGGGCGCTGGTGCCCATCATGTTCTTTT 21 24 0 GCTGTGCCAC 0.928367 -136 CTACTCGCCGGCTCCGGCGGTTCGCGGTGCCCG 21 68 1 GCTCGGCGTC 0.916265 -92 CCATCTATAGGCTCCGGGCCCACATGCTGGCTG 21 104 0 GCTCGGGCCC 0.822022 -56 TAGCCGGGCGCGGCCAAAATTTGC 22 2 1 AGCCGGCCGC 0.441063 -40 GCCCGACGAGACAGGGGCAGAACCTGATTGGCA 23 14 0 ACAGGGCGAC 0.496922 -287 AGCGACAACGTCCCCTGCGCACCGCCCAGGAAT 23 69 0 TCCCTGCCAC 0.395498 -232 GTCAAGCGGGGCTCAGGCAGCTCGAGGCACAGC 23 99 0 GCTCGGCGCC 0.872427 -202 GCAGCCAGTTACTGAGGGACATCTGCTGGGCTG 23 132 1 ACTGGGGCAC 0.869663 -169 CCGGCAGCAAGCCGCAGCCCAGCAGATGTCCCT 23 146 0 GCCGAGCCAC 0.683013 -155 ATTCCCGAGAGTTCTGGCACGGCTTCAACGGCG 23 273 0 GTTCGGCCGC 0.392024 -28 GCGTGTCTGCACCGCGGCCCGCCTTTCCGGGAT 24 125 1 ACCGGGCCGC 0.954003 -159 GCCCCGGCATGCTGTTGCGGATCCCGGAAAGGC 24 145 0 GCTGTGCGAC 0.886714 -139 GCAACAGCATGCCGGGGCGGTCCCGCGGCGGTT 24 160 1 GCCGGGCGTC 0.90063 -124 CGCGGCAGACGCCAGGGCCCGGCTTCAGCCGAT 24 224 1 GCCAGGCCGC 0.595519 -60 CCCGGCTTCAGCCGATGCCGGGCGAACAACCGA 24 241 1 GCCGTGCGGC 0.864701 -43 GGCCAACACTGTGGCACAACGATGTATCCA 25 8 1 ACTGGGCCAC 0.941036 -77 ATGGTGACATACTGCTGGCCGCCTGCGTCCGGT 26 29 1 ACTGTGGCGC 0.64933 -272 CCAGCGGCACGCTCCTGGTGACCGGAGTCAGCC 26 66 0 GCTCTGGGAC 0.808979 -235 CCGTTATTACGCCGAGCGTGAACTCAGTGCAAG 26 224 1 GCCGGCGGAC 0.554292 -77 CCATTCGGCCGCTCTGGCACGCCTCCATGGACT 31 208 1 GCTCGGCCGC 0.888314 -93 GCCTCCGGCGGCTCGGGGAGTCCGGGTACTCTC 31 245 0 GCTCGGGGTC 0.829862 -56 **** *** ** * Masking position 13 Map Score: 55.0592 Number of sites scoring better than the average of aligned sites = 20020 Number in coding regions = 18698 Number in noncoding regions = 1322 Number of orfs with sites within 600 bp upstream = 788 Fraction of orfs with sites within 600 bp upstream = 0.126566 Motif number 6 GGGGTGGGGCAAGGAGGCGGGTA 3 3 0 AGGAGGCGGG 0.89719 -183 CACGGGACTAACGGGGGTGGGGCAAGGAGGC 3 16 0 AGGGGGTGGG 0.951982 -170 TGGGGTAGTCGAGGGAGCTGGCCAGGTGGTG 5 24 1 GGGGAGCTGG 0.933979 -26 AATTCCACAAAAGGGGGTTTGGATCCTTCTT 6 30 1 AGGGGGTTTG 0.974709 -127 GGCTCGGGCGGCGGGAGCTTGCCGAGGCGGT 13 54 0 GGGGAGCTTG 0.932808 -247 CGGGCCCGAAATGGGGGCTTTTGCGTCTGCT 19 31 0 AGGGGGCTTT 0.96389 -114 CGGGCCCGAAATGGGGGCTTTTGCGTCTGCT 19 54 1 AGGGGGCTTT 0.96389 -91 AAAGAACATGATGGGCGCTGGTGCCCATCAT 21 32 0 AGGGCGCTGG 0.979732 -128 GCCGGGTGGGATGGGAGTTTGGCGTGCTACT 26 170 0 AGGGAGTTTG 0.926638 -131 GGAGTAAGATAGGGGTGCTTGTTAAGTTGT 27 10 0 AGGGTGCTTG 0.968421 -70 ACACGCGCTAAGGGGTGTTGTAAACAGGTCG 28 25 0 AGGGTGTTGT 0.641361 -68 CCGTTGAGCTACGGGCGCTTGTCTTCAGTTG 31 97 1 AGGGCGCTTG 0.979354 -204 CGGGAAGTCCATGGAGGCGTGCCAGAGCGGC 31 215 0 AGGAGGCGTG 0.89544 -86 * ********* Masking position 7 Map Score: 16.0703 Number of sites scoring better than the average of aligned sites = 509 Number in coding regions = 446 Number in noncoding regions = 63 Number of orfs with sites within 600 bp upstream = 63 Fraction of orfs with sites within 600 bp upstream = 0.0101189 Motif number 7 CACGATTTGGCACCTGACAGCAAATTCCA 1 12 1 CACCGACAGC 0.750055 -19 GACGCGGCCTCAACCGATAGCATCGTGCTAA 3 47 0 CAACGATAGC 0.490733 -139 CAAGGTATCGCTGCGGCGCGCATCGTCGCCC 6 119 1 CTGCGCGCGC 0.8397 -38 CTAGTATCAGTAACCGAACGCATTGCCTCAG 9 112 1 TAACGAACGC 0.297717 -101 GCGAGGTGGACAGCAGCCCACACATAGCGGT 9 164 1 CAGCGCCCAC 0.858258 -49 CTGGGGGCAGCACCCGCTCGCGGCGGA 10 16 1 CACCGCTCGC 0.634015 -17 CTGACAGCGGCGACGTGCCGCAGCGGCGCAT 13 110 0 CGACTGCCGC 0.68267 -191 TGTGCGTGGTCAACTGACAGCGGCGACGTGC 13 123 0 CAACGACAGC 0.911804 -178 CACGCACACACTGCGCACCGCAGAGCTTCCG 13 146 1 CTGCCACCGC 0.81795 -155 CAGACCGCAACAGCTGACAGCCCCTTCCGAA 18 139 0 CAGCGACAGC 0.943514 -63 CCACTGACAACTACCGACCACTCAGACCGCA 18 161 0 CTACGACCAC 0.600084 -41 ACTGTTGTTCCTACAGCACGCCACTGACAAC 18 181 0 CTACGCACGC 0.932781 -21 CCAGCCAGTTCGACCAACCGCTACGGCGTGA 19 84 0 CGACAACCGC 0.584819 -61 GCGGTGCCCGCGACAGCCAGCATGTGGGCCC 21 91 1 CGACGCCAGC 0.937118 -69 ACAACGTCCCCTGCGCACCGCCCAGGAATTG 23 67 0 CTGCCACCGC 0.81795 -234 CAGTAACTGGCTGCGTCAAGCGGGGCTCAGG 23 115 0 CTGCTCAAGC 0.369944 -186 GGAGGCGTTCCGGCAGCAAGCCGCAGCCCAG 23 157 0 CGGCGCAAGC 0.889787 -144 CTACCCCCCGCAACTTACCGCTGTTGAAAGG 23 234 0 CAACTACCGC 0.799426 -67 CGTGTCTGCACCGCGGCCCGCCTTTCCGGGA 24 126 1 CCGCGCCCGC 0.970313 -158 CCGGGATCCGCAACAGCATGCCGGGGCGGTC 24 151 1 CAACGCATGC 0.500702 -133 CACGGCGTTTCGGCAGCCGGCGTCGGCCGTC 25 39 1 CGGCGCCGGC 0.864778 -46 TGGTGACATACTGCTGGCCGCCTGCGTCCGG 26 30 1 CTGCGGCCGC 0.961594 -271 AGTCAGCCCGCGACCGGACGCAGGCGGCCAG 26 43 0 CGACGGACGC 0.877733 -258 GAGATCTGGCCAGCGGCACGCTCCTGGTGAC 26 77 0 CAGCGCACGC 0.97198 -224 CCAGATCTCCCCGCGGGCCGCGCGGGATAAG 26 99 1 CCGCGGCCGC 0.924462 -202 ACCAACGGAACGCGTTTGCGCTA 31 3 1 CAACGAACGC 0.930071 -298 **** ****** Masking position 4 Map Score: 28.6739 Number of sites scoring better than the average of aligned sites = 11493 Number in coding regions = 10689 Number in noncoding regions = 804 Number of orfs with sites within 600 bp upstream = 554 Fraction of orfs with sites within 600 bp upstream = 0.0889817 Motif number 8 CGACCGGTAGGTTAGGACAGCCTTTCTCG 2 7 1 GAGTTAGGCA 0.935668 -102 CGATTACTACGCACGTTAGGACATTTCAGGAGG 4 100 1 GACTTAGGCA 0.955739 -74 CGGACCTAGTGACCCTTAGGCCTCCCGATACCT 4 130 0 GCCTTAGGCT 0.814547 -44 AAGACGTGGTGAAGTTTAGGTCAAATGTAGTCG 7 11 0 GAGTTAGGCA 0.935668 -42 GGGCGGCGGCGCGGTCACGTAGACCAT 11 83 0 GCGCGCGGCA 0.891323 -17 GGGCTTTTGCGTCTGCTCGGCCAACCTAGCCCA 19 15 0 GCTCTCGGCA 0.886887 -130 CGAAAACCTAGCAGTTTAGGTAATCCTTTCCGA 23 197 0 GAGTTAGGAA 0.725037 -104 AGCCGTGCCAGAACTCTCGGGAATGGGCC 23 282 1 GACCTCGGAA 0.928122 -19 AGCCGGCGTCGGCCGTCCGGCCACCCATTAGGC 25 53 1 GCCTCCGGCA 0.883346 -32 ACGGCAGCCTCGGTCATCGGGGTGAT 27 64 0 GAGCTCGGCA 0.97958 -16 GTCCTAGTGAGGACCTTCTGCCAGTAAAACATG 29 84 0 GACTTCTGCA 0.815473 -28 CGCCTCCGCAGTCCTTTAGGGGACACAACTGAA 31 120 0 GCCTTAGGGA 0.841898 -181 AGCCCCATTCGGCCGCTCTGGCACGCCTCCATG 31 204 1 GCCCTCTGCA 0.89954 -97 GGGAGTCCGGGTACTCTCGGGAAGTCCATGGAG 31 230 0 GACCTCGGAA 0.928122 -71 CTAGGCCTCCGGCGGCTCGGGGAGTCCGGGTAC 31 249 0 GCGCTCGGGA 0.922059 -52 TGGCGGCTGTGTACGCTAGGCCTCCGGCGGCTC 31 264 0 GACCTAGGCT 0.848602 -37 * ** ***** ** Masking position 10 Map Score: 13.3581 Number of sites scoring better than the average of aligned sites = 2488 Number in coding regions = 2313 Number in noncoding regions = 175 Number of orfs with sites within 600 bp upstream = 167 Fraction of orfs with sites within 600 bp upstream = 0.026823 Motif number 9 ACACTTCCTACGCCGTTGTAGTCCGATACA 8 94 1 CGCCGTTGTA 0.914719 -207 TCGAATGCGCCGCTGCGGCACGTCGCCGCT 13 106 1 CGCTGCGGCA 0.939753 -195 CGTTGCCGTTGCAAGTGAGTGAT 17 20 0 TGCCGTTGCA 0.769546 -13 AGCGGCCCATCGCCGTGCGACGTAGGCCGT 18 103 0 CGCCGTGCGA 0.955896 -99 GGCGATGGGCCGCTGTTCAATTCGGAAGGG 18 119 1 CGCTGTTCAA 0.899027 -83 GGGACGTTGTCGCTGTGCCTCGAGCTGCCT 23 88 1 CGCTGTGCCT 0.86862 -213 CGCAACTTACCGCTGTTGAAAGGCCGCCGA 23 227 0 CGCTGTTGAA 0.958087 -74 AGGCGAAGTTCGCCGTTGAAGCCGTGCCAG 23 263 1 CGCCGTTGAA 0.977516 -38 ACAATGTCGTCGCTGTGGATTCCGCTGCCG 24 32 1 CGCTGTGGAT 0.945408 -252 CGAAGGGAACCGCCGCGGGACCGCCCCGGC 24 170 0 CGCCGCGGGA 0.953792 -114 GCTGCCGAAACGCCGTGGATACATCGTTGT 25 26 0 CGCCGTGGAT 0.970528 -59 ********** Masking position 3 Map Score: 9.61815 Number of sites scoring better than the average of aligned sites = 2331 Number in coding regions = 2163 Number in noncoding regions = 168 Number of orfs with sites within 600 bp upstream = 158 Fraction of orfs with sites within 600 bp upstream = 0.0253774 Motif number 10 CGTGCTAACACGGGACTAACGGGGGTGGGGC 3 24 0 CGGGACTACG 0.923605 -162 CGTGTTAGCACGATGCTATCGGTTGAGGCCG 3 43 1 CGATGCTACG 0.899229 -143 AACGGCGCCCCGGGGCCGGCGGGTTCCGCAC 3 86 0 CGGGGCCGCG 0.968638 -100 AGGGGAAATGCGGGGCTGCGGGACGGGCTGG 3 133 1 CGGGGCTGGG 0.946495 -53 GGCGGTCGAGCCTATCCGGGCGACGAT 6 140 0 CGAGCCTACC 0.816299 -17 GCTAAGTTCGCGGGGTTGGCTGAGCCAGAGG 8 145 0 CGGGGTTGCT 0.665144 -156 CCGAGGAACTCGGGCCTAGCCCGCAGACGTT 12 22 0 CGGGCCTACC 0.877016 -54 GGGCGGACATCGAGGCTGCAGTTAGATGACG 12 53 1 CGAGGCTGAG 0.929152 -23 GGGAGCTTGCCGAGGCGGTAGTTGATCGCGA 13 42 0 CGAGGCGGAG 0.79196 -259 CCTGTGATGTCGCGGTTGTCGCCGCGTAGAC 13 268 1 CGCGGTTGCG 0.901814 -33 GGGGTACGAGACTATCGGCGCGGATAC 14 45 0 CGAGACTACG 0.882232 -17 ACGAGCTATTCGATGTTAACGCGAGTCAGAC 16 68 1 CGATGTTACG 0.584845 -48 AACAGCATGCCGGGGCGGTCCCGCGGCGGTT 24 162 1 CGGGGCGGCC 0.937082 -122 GGTCCGGCATCGCGGCAGACGCCAGGGCCCG 24 214 1 CGCGGCAGCG 0.864048 -70 ATACTGATCGCGGTCCTAGCGGTATTTCTTG 26 138 0 CGGTCCTACG 0.805469 -163 CCCCGATGACCGAGGCTGCCGT 27 68 1 CGAGGCTGCG 0.991865 -12 ******** ** Masking position 2 Map Score: 14.3451 Number of sites scoring better than the average of aligned sites = 8315 Number in coding regions = 7806 Number in noncoding regions = 509 Number of orfs with sites within 600 bp upstream = 431 Fraction of orfs with sites within 600 bp upstream = 0.0692258 Motif number 11 GTCGGCGGCGGCTCCCTCACCATAGCCCCA 3 161 0 GCTCCCTCAC 0.955699 -25 TCCCGTACCGGCACCCTAACAGGGCCCCCG 6 71 1 GCACCCTAAC 0.931166 -86 GCTGGGGGCAGCACCCGCTCGCGGCGGA 10 15 1 GCACCCGCTC 0.947047 -18 TGTCAGTTGACCACGCACACACTGCGCACC 13 135 1 CCACGCACAC 0.833183 -166 GACTTACCACCCTAACGACCCGGCGA 19 129 0 CCACCCTAAC 0.956539 -16 CGCACTTCCTCCCACACCATGGCCGCT 21 143 0 CCTCCCACAC 0.949523 -17 TGCCGGAACGCCTCCCGCTCTTCGTCGGAA 23 173 1 CCTCCCGCTC 0.947748 -128 TGATAGCGGACCACCCTATCTTACTCCGGA 27 38 0 CCACCCTATC 0.932062 -42 ********** Masking position 6 Map Score: 5.27486 Number of sites scoring better than the average of aligned sites = 829 Number in coding regions = 770 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 12 TACCCGCCTCCTTGCCCCACCCCCGTTA 3 9 1 TCCTTGCCCC 0.905695 -177 CCCAGAGTTGTCATTTCGCCGCGCGACGTG 8 29 0 TCATTTCGCC 0.901235 -272 TCTTTGCCGGTCCTTTCTACTGCACTGTAC 11 20 1 TCCTTTCTAC 0.681837 -80 ACCATCGACATCCATTCGACCGTGTGCTCA 13 181 1 TCCATTCGAC 0.858446 -120 CCGTTGCTTCCTTGCGTCCATCGAAGTG 20 113 0 TCCTTGCGTC 0.94058 -18 TTCTTTCGCGTCTACTCGCCGGCTCCGGCG 21 57 1 TCTACTCGCC 0.713092 -103 TTGCGCGAGTTCTTTGCGTCACGGCCCGAC 23 40 0 TCTTTGCGTC 0.783578 -261 TGGTGCACCATCCTTTCGCCGAGCGTGTAC 26 281 0 TCCTTTCGCC 0.985984 -20 GAGGTTCAAATCCTCTCGCCTCCGCAGTCC 31 139 0 TCCTCTCGCC 0.971741 -162 ********** Masking position 1 Map Score: 3.14878 Number of sites scoring better than the average of aligned sites = 330 Number in coding regions = 270 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 13 ********** No masking Map Score: 4.74886e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 TCCTGACATCTGTGCGACTTTCGCCGCGAGAAA 2 33 0 TGTGCGCTCG 0.942887 -76 ACGAAGCGGCTGAGCCTCTGGCTCAGCCAACCC 8 131 1 TGAGCCCGCT 0.956526 -170 TTAGGACGGTTGTGCCGATTTCGTGGATAGCTG 8 257 0 TGTGCCATCG 0.899524 -44 GATATCGACTTGAGCTGCTCTGGGAGAATGGTC 11 56 1 TGAGCTCTGG 0.834287 -44 TGTAGCCCAGTGTGCCACCGTTGCCGTCCCGGA 18 71 0 TGTGCCCTTG 0.957217 -131 CCAATCAGGTTCTGCCCCTGTCTCGTCGGGCCG 23 16 1 TCTGCCCTCT 0.829788 -285 ACGTTGTCGCTGTGCCTCGAGCTGCCTGAGCCC 23 91 1 TGTGCCCGCT 0.963162 -210 TCGAGCTGCCTGAGCCCCGCTTGACGCAGCCAG 23 107 1 TGAGCCCTTG 0.949563 -194 GATACATCGTTGTGCCACAGTGTTGGCC 25 6 0 TGTGCCCTGT 0.927088 -79 CTCTATCCGTTGAGCTACGGGCGCTTGTCTTCA 31 91 1 TGAGCTCGCG 0.911913 -210 TCATTAGCAGTGAGCCCCATTCGGCCGCTCTGG 31 192 1 TGAGCCCTCG 0.98965 -109 ****** * *** Masking position 1 Map Score: 8.18733 Number of sites scoring better than the average of aligned sites = 644 Number in coding regions = 589 Number in noncoding regions = 55 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 15 AGCACTCAATGGAACCCCTGCATAACCTGCT 2 68 0 GGAACCCTGC 0.989297 -41 CTATGGTGAGGGAGCCGCCGCCGACCAGCC 3 166 1 GGAGCCCCGC 0.980892 -20 GAGCTGGCCAGGTGGTGCTGCC 5 38 1 GGTGGTCTGC 0.884066 -12 GGTTGGGCAAGGTATCGCTGCGGCGCGCATC 6 112 1 GGTATCCTGC 0.84764 -45 GTCTTTTTTAGGTGCCACAGCCAAAGAGTCT 8 182 1 GGTGCCCAGC 0.879878 -119 ATGGTGATCCGGAAGCTCTGCGGTGCGCAGT 13 155 0 GGAAGCCTGC 0.982443 -146 TGAAATGCTAGGAGGCTCTGCGGT 15 69 1 GGAGGCCTGC 0.980095 -14 TGCGTCAGCGGGAACTACCGCAGAATTCACC 20 72 0 GGAACTCCGC 0.944406 -59 GCTTGCTGCCGGAACGCCTCCCGCTCTTCGT 23 167 1 GGAACGCTCC 0.702209 -134 ATCCCCGAAGGGAACCGCCGCGGGACCGCCC 24 174 0 GGAACCCCGC 0.983636 -110 ACCCGGCCATGGTAGGACTGCTGGCATGAGC 26 194 1 GGTAGGCTGC 0.898436 -107 GTCCTAGTGAGGACCTTCTGCCAGTAAAACA 29 86 0 GGACCTCTGC 0.878107 -26 ****** **** Masking position 8 Map Score: 15.1286 Number of sites scoring better than the average of aligned sites = 959 Number in coding regions = 894 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 64 Fraction of orfs with sites within 600 bp upstream = 0.0102795