AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00380_mtub_reg_100.orf -o00380_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: trpS 24 trpS aldB 26 aldB Input sequences: #1 Rv0144 101 hypothetical protein Rv0144 #2 Rv0145 88 hypothetical protein Rv0145 #3 Rv0146 42 hypothetical protein Rv0146 #4 Rv0147 94 hypothetical protein Rv0147 #5 Rv0187 300 hypothetical protein Rv0187 #6 Rv0218 92 hypothetical protein Rv0218 #7 Rv0221 43 hypothetical protein Rv0221 #8 echA1 30 echA1 #9 Rv0223c 98 hypothetical protein Rv0223c #10 Rv0224c 35 hypothetical protein Rv0224c #11 fadA2 141 fadA2 #12 fadE7 35 fadE7 #13 aceA 274 aceA #14 fadB2 81 fadB2 #15 mmpS2 173 mmpS2 #16 hemA 49 hemA #17 Rv0552 77 hypothetical protein Rv0552 #18 menD 42 menD #19 Rv0557 61 hypothetical protein Rv0557 #20 end 194 end #21 lpqP 31 lpqP #22 fadE8 59 fadE8 #23 fadA 156 fadA #24 echA6 26 echA6 #25 Rv0976c 197 hypothetical protein Rv0976c #26 Rv1009 207 hypothetical protein Rv1009 #27 echA9 186 echA9 #28 sucA 192 sucA #29 fadA4 300 fadA4 #30 katG 37 katG #31 furA 104 furA #32 cobG 224 cobG #33 cobL 67 cobL #34 Rv2073c 29 hypothetical protein Rv2073c #35 amiA2 61 amiA2 #36 mbtB 98 mbtB #37 echA14 300 echA14 #38 echA15 52 echA15 #39 Rv2689c 173 hypothetical protein Rv2689c #40 echA16 46 echA16 #41 rpsB 283 rpsB #42 gatC 84 gatC #43 serB2 37 serB2 #44 ctaD 214 ctaD #45 Rv3174 92 hypothetical protein Rv3174 #46 Rv3292 30 hypothetical protein Rv3292 #47 echA18 236 echA18 #48 echA19 73 echA19 #49 echA20 54 echA20 #50 fadA6 64 fadA6 #51 Rv3557c 300 hypothetical protein Rv3557c Motif number 1 ACGTACGCGATCACCGCCGCTGTGCGGCGA 1 68 1 TCACCGCCGC 0.958961 -34 GTTTCGGATCTCCTCGCCGCACAGCGGCGG 1 81 0 TCCTCGCCGC 0.89631 -21 CTACGCTTCGGGGCCGCCGGTTAGGTCTCG 2 12 0 GGGCCGCCGG 0.907819 -77 CAATTCGTCGCCGCAGGTGCAGCG 5 5 1 TCGTCGCCGC 0.982633 -296 CCGGTGACGCCTACCGCTGCACCTGCGGCG 5 19 0 CTACCGCTGC 0.504852 -282 GCGGTAGGCGTCACCGGCGCCAGCACAGTG 5 32 1 TCACCGGCGC 0.536351 -269 GCCACAGCCCTCGTGGCTGCAGGTCAGCAA 5 89 1 TCGTGGCTGC 0.677307 -212 ACCCTCATCCGTGTCGGGGATCCCCGAGGA 5 150 1 GTGTCGGGGA 0.62141 -151 ACCCCCAGGCCGGTGGGCGGTTGCCTGCTG 5 251 1 CGGTGGGCGG 0.604592 -50 CGACCACCGACCGTCGCGCGCCAGCAGGCA 5 272 0 CCGTCGCGCG 0.923104 -29 GGTCCAGTATGCGTCGGCGCAATTTCGCCT 6 12 1 GCGTCGGCGC 0.609277 -81 CTCGGCATCGTCGCCGGCGGTCATGGCGTC 9 53 0 TCGCCGGCGG 0.527824 -46 CCGCTCCTCCTCATCGCTGCGCTCGGCATC 9 74 0 TCATCGCTGC 0.751462 -25 ATGCGCCGCTCCTCCTCATCGC 9 87 0 GCGCCGCTCC 0.878824 -12 TATCGTGTGGGGGTCGGGCGCGCCAATACA 11 26 1 GGGTCGGGCG 0.886955 -116 TCAGTTCGGGGGATCGGCCGTTGAGGGCCA 11 107 0 GGATCGGCCG 0.742839 -35 CGGCCCGGTAGCCTCGCGGC 12 1 0 GCCTCGCGGC 0.969696 -35 CGAGGCTACCGGGCCGGGGCAGTATTGAGT 12 15 1 GGGCCGGGGC 0.512479 -21 CCAGGCGGTGTCAACGGCGCAGCTTCACTG 13 201 0 TCAACGGCGC 0.528961 -74 CGTGTTCCGCCCATCGCGCGGACCTAGTGA 15 151 0 CCATCGCGCG 0.790636 -23 GCGCGGCCCGGCCATACGGT 18 1 1 GCGCGGCCCG 0.960856 -42 CGAAATGGTTGCGTAGCGGCATACGGCGTG 19 24 0 GCGTAGCGGC 0.706085 -38 ACTGTCAGCGCCGGCTGTCGAAATGGT 19 45 0 GCGCCGGCTG 0.786982 -17 AACACTTTATGCGCCGGGGCCCACGAATAC 20 91 1 GCGCCGGGGC 0.504554 -104 GCAGCATCCCGTGCCGCGGCTGGCCGGACG 20 126 1 GTGCCGCGGC 0.985178 -69 CTTCAAGCCCCGCGGCACCTACCGTT 21 7 1 GCCCCGCGGC 0.870984 -25 GCGGCGCGCATCGTCGCCCGGATAGGCTCG 23 17 0 TCGTCGCCCG 0.926118 -140 GCGACGATGCGCGCCGCAGCGATACCTTGC 23 30 1 GCGCCGCAGC 0.905816 -127 ACCAACAGGTTGGCCGGGGGCCCTGTTAGG 23 63 1 TGGCCGGGGG 0.740151 -94 GCCGGGTGCTTTGCCGGCCCCAGGAGGTCA 25 16 0 TTGCCGGCCC 0.761087 -182 GTTTCGCTACGGGACGCCGGGTGCTTTGCC 25 31 0 GGGACGCCGG 0.845087 -167 TCTACTCCAATGGACGGCGCAGACCGGGCC 25 65 1 TGGACGGCGC 0.51184 -133 GGCGCAGACCGGGCCGCTTCGACTCAGGAA 25 80 1 GGGCCGCTTC 0.685435 -118 TTGGTTGGTAGCGTCGCCGATCCCAAGGGA 25 150 1 GCGTCGCCGA 0.955127 -48 CGGGTGTTATGGGCCGCTCGGCGCGC 26 7 0 GGGCCGCTCG 0.84287 -201 GTGATCGAACGGGTGGGGCCTCTAGGTTTC 26 79 1 GGGTGGGGCC 0.743111 -129 CCAGCGGTGCCCGCGGGGGCTAAGGTTTAT 27 116 0 CCGCGGGGGC 0.885645 -71 GCCCCCGCGGGCACCGCTGGGCGAGCCACG 27 126 1 GCACCGCTGG 0.930974 -61 GGGCCTCGCCTCCCCTGAAGAG 27 175 0 GCCTCGCCTC 0.753727 -12 GAGAGACCGGGCAACGCGCG 28 1 0 GCAACGCGCG 0.627194 -192 CAAGCGCATTGCGCGGCGCCTGCTGGCAGT 28 81 0 GCGCGGCGCC 0.971784 -112 CTTATGTTGGCCACGGCCGCTGTTCGCCTC 28 136 0 CCACGGCCGC 0.901159 -57 TTGCGCCGCGGAGCCCGGCACC 29 3 1 GCGCCGCGGA 0.939827 -298 CGCCAGCAGTGCCTCGCGGATGCCCTGATC 29 32 1 GCCTCGCGGA 0.742341 -269 GTCGGTATTGCGGTCGCCGACCTGGACGTT 29 122 0 CGGTCGCCGA 0.630878 -179 CTGGATCGTGGGATGGCGGGTGGA 31 5 0 GGATGGCGGG 0.746409 -100 CGATCCAGCGGCCCCGGGGCGATCGGGTCC 31 27 1 GCCCCGGGGC 0.499693 -78 CTCCGGCCACCTGTCGCGCCCTCAGAAGGT 32 15 1 CTGTCGCGCC 0.738939 -210 GCTGCCGATAGCGTCGCGGTGTGCCGCGGC 32 48 1 GCGTCGCGGT 0.776883 -177 GCGTCGCGGTGTGCCGCGGCGTCCGCGCGG 32 58 1 GTGCCGCGGC 0.985178 -167 CGGGCACGAGCGACCGCGCGGACGCCGCGG 32 71 0 CGACCGCGCG 0.708236 -154 ATTGCGCGCATCGTGGCGGGTTTGAGGGCG 32 119 0 TCGTGGCGGG 0.876255 -106 ACGGGAGAATGGGTCGCCGCCTCGCCGCGC 32 194 0 GGGTCGCCGC 0.985016 -31 GCGCTCTGCATCGTCGCGGA 33 1 0 TCGTCGCGGA 0.818705 -67 TACCCCCACCGCATCGCTGCGCTCTGCATC 33 19 0 GCATCGCTGC 0.928299 -49 TGCGGTGGGGGTACCGCCCGCTTGCGGGGG 33 36 1 GTACCGCCCG 0.840379 -32 ACCCGCGATGTCGTGGCGGGGTGCAAAACT 35 17 0 TCGTGGCGGG 0.876255 -45 GGGTACGAGACTATCGGCGCGGATACCCGC 35 41 0 CTATCGGCGC 0.627903 -21 TTCGAACCACGCACCTGCGCTACCAGCCCC 36 28 0 GCACCTGCGC 0.526876 -71 ACTGACCTGCGCATCGCCTCCGTAGCTCAG 37 122 1 GCATCGCCTC 0.866388 -179 CGTTCGAGTCGTGCCGGGGGCACTGTGGAA 37 189 1 GTGCCGGGGG 0.930176 -112 CTCTGCATCGTCGCCGGCGCGGGTCAATCG 39 22 0 TCGCCGGCGC 0.505506 -152 CGGGTCACTGGCGCCGCTCCTCCCCATCGC 39 56 0 GCGCCGCTCC 0.878824 -118 CTCTGCATCGTCGCCGGCGCGGGTCACTGG 39 75 0 TCGCCGGCGC 0.505506 -99 CGGGTCACTGGCGCCGCTCCTCCCCATCGC 39 109 0 GCGCCGCTCC 0.878824 -65 CTCTGCATCGTCGCCGGCGCGGGTCACTGG 39 128 0 TCGCCGGCGC 0.505506 -46 TGGCGCCGCTCCTCCCCATCGC 39 162 0 GCGCCGCTCC 0.878824 -12 TCGCCGCCGCCCGTTTTGTG 41 1 1 TCGCCGCCGC 0.908119 -283 GGCGCAGCTCGCATCGGCGGGCTGACTTCG 41 96 1 GCATCGGCGG 0.905706 -188 TCGCGTGTCTGCACCGCGGCCCGCCTTTCC 41 123 1 GCACCGCGGC 0.966574 -161 CCGAAGGGAACCGCCGCGGGACCGCCCCGG 41 171 0 CCGCCGCGGG 0.961027 -113 CCCGGGTCCGGCATCGCGGCAGACGCCAGG 41 210 1 GCATCGCGGC 0.985715 -74 TGTTCGCCCGGCATCGGCTGAAGCCGGGCC 41 239 0 GCATCGGCTG 0.69916 -45 TCGGCAGCCGGCGTCGGCCGTCCGGCCACC 42 48 1 GCGTCGGCCG 0.866711 -37 AAAGCCTAATGGGTGGCCGGACGGCCGACG 42 59 0 GGGTGGCCGG 0.913946 -26 GGCCCAACCGGTACGGCCCCA 43 2 0 GTACGGCCCC 0.646339 -36 AACGCGTGCTGTCCGGCGGG 44 1 0 GTCCGGCGGG 0.583915 -214 ACCCCGATTCGCGCGGGCGGAAAGCGTTGG 44 57 1 GCGCGGGCGG 0.856292 -158 ATGCCAGACTCCGCCGGCGGGCCGTTGCAG 44 88 0 CCGCCGGCGG 0.49979 -127 CCCTCGATCAGGCTGGCGGCAGGCCTGGTC 44 134 0 GGCTGGCGGC 0.688408 -81 CATCCAGCCCGGACCGGGCCAAAACCCAGT 44 181 0 GGACCGGGCC 0.634599 -34 GACGCGGTGCCGCCGCGGGCGATACG 47 7 1 GTGCCGCCGC 0.983889 -230 GCCGCGGCCAGCATCTCCGGGTTCACCAAT 47 75 0 GCATCTCCGG 0.533876 -162 CCCAAGTCTGTCGCCGCCGCGGCCAGCATC 47 90 0 TCGCCGCCGC 0.908119 -147 TCAGGGATCAGCGCCGCCTATGCGCGTCCT 47 130 1 GCGCCGCCTA 0.790191 -107 GTGCCGACCTGTGCCGCGTCTCGAGTTCTC 47 216 0 GTGCCGCGTC 0.849484 -21 CTCTTTCTGCCCGTCGGGTGTGAGCTTGTC 48 36 0 CCGTCGGGTG 0.622104 -38 GGTTGCCACGGCCGCCACCTCTTTC 48 59 0 CCACGGCCGC 0.901159 -15 GACATCTGGGGTATCGGCGGAGAGTGCCTA 51 85 0 GTATCGGCGG 0.807814 -216 CCTCGATCCTGCACCTGGGCCGGGCTGTGC 51 137 1 GCACCTGGGC 0.613863 -164 CGCCCTTCGCTCACCGGGGCATTAGATGCG 51 198 0 TCACCGGGGC 0.687436 -103 ********** Masking position 6 Map Score: 147.816 Number of sites scoring better than the average of aligned sites = 80611 Number in coding regions = 75666 Number in noncoding regions = 4945 Number of orfs with sites within 600 bp upstream = 1354 Fraction of orfs with sites within 600 bp upstream = 0.217475 Motif number 2 CCCAGAGTTGGCCAGCGCTATCCGAC 1 7 1 GTTGGCCAGC 0.518519 -95 CTGGGCCATGGTTGCGCTGCTGATCGTCGG 1 32 0 GTTGCGCTGC 0.643944 -70 GGATCTCCTCGCCGCACAGCGGCGGTGATC 1 76 0 GCCGCACAGC 0.40528 -26 TGGTTCTCGTGATGCCGGTG 3 1 0 GATGCCGGTG 0.359635 -42 GGGAGCACAGGATGAGCGCC 3 33 1 GATGAGCGCC 0.701911 -10 AGGTCAGTCGGATGCGCTCG 4 1 0 GATGCGCTCG 0.789333 -94 CGGTGATAACCGCGATCCTAGTCA 4 81 0 GATAACCGCG 0.226217 -14 CTGGGACCTTGCTGACCTGCAGCCACGAGG 5 97 0 GCTGACCTGC 0.736019 -204 ATTACCGACAGCTGACCACCTGGGATTCCT 5 176 0 GCTGACCACC 0.674508 -125 ACCACCGACCGTCGCGCGCCAGCAGGCAAC 5 270 0 GTCGCGCGCC 0.543167 -31 GCTCGGCATCGTCGCCGGCGGTCATGGCGT 9 54 0 GTCGCCGGCG 0.87248 -45 CGCCGGCGACGATGCCGAGCGCAGCGATGA 9 64 1 GATGCCGAGC 0.931103 -35 CGAGCGCAGCGATGAGGAGGAGCGGCGCAT 9 79 1 GATGAGGAGG 0.560094 -20 TCGTGTGGGGGTCGGGCGCGCCAATACACG 11 28 1 GTCGGGCGCG 0.715976 -114 GGGATCGGCCGTTGAGGGCCATACTACCCA 11 98 0 GTTGAGGGCC 0.451911 -44 GCCGCGAGGCTACCGGGCCGGGGCAGTA 12 9 1 GCTACCGGGC 0.810056 -27 CGTTTCAGAAGCTACCCGCCAGTAACGACA 13 53 0 GCTACCCGCC 0.720681 -222 CGAAAACGCTGACGCCCTACCGTCGTCCAG 13 227 0 GACGCCCTAC 0.428523 -48 AGGTCCGCGCGATGGGCGGAACACGAGG 15 156 1 GATGGGCGGA 0.779325 -18 AGTCGAGGGAGCTGGCCAGGTGGTGCTGCC 16 30 1 GCTGGCCAGG 0.909904 -20 GCGCGGCCCGGCCATACGGTCC 18 3 1 GCGGCCCGGC 0.61411 -40 CAACCATTTCGACAGCCGGCGCTGACAGT 19 43 1 GACAGCCGGC 0.589714 -19 ATTTGCTGCTGGTGCGGAGGATTAGGCA 20 9 0 GGTGCGGAGG 0.842841 -186 GGCACGGGATGCTGCCGTCCGTATTCGTGG 20 111 0 GCTGCCGTCC 0.909608 -84 CCGTGCCGCGGCTGGCCGGACGTGATCCGA 20 134 1 GCTGGCCGGA 0.8892 -61 AACGGTAGGTGCCGCGGGGCTTGAAG 21 7 0 GCCGCGGGGC 0.914833 -25 GGCGCGCATCGTCGCCCGGATAGGCTCGAC 23 15 0 GTCGCCCGGA 0.726621 -142 TCCGGGCGACGATGCGCGCCGCAGCGATAC 23 25 1 GATGCGCGCC 0.883752 -132 CAACCAACAGGTTGGCCGGGGGCCCTGTTA 23 61 1 GTTGGCCGGG 0.903441 -96 GGCGCTGACCTCCTGGGGCCGGC 25 4 1 GCTGACCTCC 0.633438 -194 AATGGACGGCGCAGACCGGGCCGCTTCGAC 25 73 1 GCAGACCGGG 0.410465 -125 GCGCGCCGAGCGGCCCATAACACC 26 5 1 GCCGAGCGGC 0.727915 -203 GAGCAACTCCGGCGCGCGGGTGTTATGGGC 26 23 0 GGCGCGCGGG 0.898889 -185 GTGGTTGAGTGTTGCCGAGGTCGGGGATAT 26 143 1 GTTGCCGAGG 0.828681 -65 GGATGACAACGCTGGCCGGGAACCCGGGCC 27 77 0 GCTGGCCGGG 0.957141 -110 CTCGCCCAGCGGTGCCCGCGGGGGCTAAGG 27 121 0 GGTGCCCGCG 0.943701 -66 CGCGGGCACCGCTGGGCGAGCCACGATCTA 27 131 1 GCTGGGCGAG 0.667018 -56 ACTCTTCAGGGGAGGCGAGGCCC 27 174 1 GGAGGCGAGG 0.293292 -13 GTGAACTTATGTTGGCCACGGCCGCTGTTC 28 141 0 GTTGGCCACG 0.664694 -52 CACTGCTGGCGGTGCCGGGCTCCGCGGCGC 29 13 0 GGTGCCGGGC 0.958496 -288 GTGCCTCGCGGATGCCCTGATCGTCGTTGA 29 40 1 GATGCCCTGA 0.720837 -261 TATTGCGGTCGCCGACCTGGACGTTGCCAT 29 117 0 GCCGACCTGG 0.687109 -184 TTACCAACGAGGTAGCCAGCATGTGACGGG 29 166 1 GGTAGCCAGC 0.299078 -135 ACCGTTGTGTGATGACGACCGATCAAGTCC 29 199 0 GATGACGACC 0.583698 -102 TTTCGGGTGCGCTGAGGAGGTAGTCATAAC 29 274 1 GCTGAGGAGG 0.662083 -27 TGGATCGTGGGATGGCGGGTGGA 31 4 0 GATGGCGGGT 0.332763 -101 GGGCGCGACAGGTGGCCGGAGTGGG 32 6 0 GGTGGCCGGA 0.807658 -219 TGTAGCTGCCGATAGCGTCGCGGTGTGCCG 32 44 1 GATAGCGTCG 0.229867 -181 GGAGCGACTCGGCGCCCTCAAACCCGCCAC 32 107 1 GGCGCCCTCA 0.46673 -118 AACCCGCCACGATGCGCGCAATCGAAAACG 32 127 1 GATGCGCGCA 0.768627 -98 TCGCCGCCTCGCCGCGCTCAGGTCCCGTCG 32 181 0 GCCGCGCTCA 0.514607 -44 AGCGCGGCGAGGCGGCGACCCATTCTCCCG 32 193 1 GGCGGCGACC 0.733706 -32 TCCGCGACGATGCAGAGCGCAGCGATGC 33 9 1 GATGCAGAGC 0.461493 -59 AGAGCGCAGCGATGCGGTGGGGGTACCGCC 33 24 1 GATGCGGTGG 0.85654 -44 GCGATGTCGTGGCGGGGTGCAAAACTATTG 35 13 0 GGCGGGGTGC 0.679736 -49 TATCGGCGCGGATACCCGCGATGTCGTGGC 35 30 0 GATACCCGCG 0.634989 -32 GTTAGCACAGGCTGCCCTAATTTTAGTGGT 36 67 0 GCTGCCCTAA 0.261333 -32 AAAATTCCTCGACGGCCACCGTTAGATAAA 37 93 1 GACGGCCACC 0.677257 -208 CTACGGAGGCGATGCGCAGGTCAGTTTATC 37 117 0 GATGCGCAGG 0.885139 -184 ATCCACCTGAGCTACGGAGGCGATGCGCAG 37 128 0 GCTACGGAGG 0.446874 -173 TTCGAGTCGTGCCGGGGGCACTGTGGAAAT 37 191 1 GCCGGGGGCA 0.71902 -110 ACGCCACCATGCTGACCTGCTATTTCCACA 37 212 0 GCTGACCTGC 0.736019 -89 AGGTCAGCATGGTGGCGTGGCTTGACACCG 37 224 1 GGTGGCGTGG 0.832103 -77 GTTATGGGTCGACGCCCAGAGTCGCCTTCA 37 258 1 GACGCCCAGA 0.718129 -43 GCTCTGCATCGTCGCCGGCGCGGGTCAATC 39 23 0 GTCGCCGGCG 0.87248 -151 CGCCGGCGACGATGCAGAGCAAAGCGATGG 39 33 1 GATGCAGAGC 0.461493 -141 AGAGCAAAGCGATGGGGAGGAGCGGCGCCA 39 48 1 GATGGGGAGG 0.832306 -126 GCTCTGCATCGTCGCCGGCGCGGGTCACTG 39 76 0 GTCGCCGGCG 0.87248 -98 CGCCGGCGACGATGCAGAGCAAAGCGATGG 39 86 1 GATGCAGAGC 0.461493 -88 AGAGCAAAGCGATGGGGAGGAGCGGCGCCA 39 101 1 GATGGGGAGG 0.832306 -73 GCTCTGCATCGTCGCCGGCGCGGGTCACTG 39 129 0 GTCGCCGGCG 0.87248 -45 CGCCGGCGACGATGCAGAGCAAAGCGATGG 39 139 1 GATGCAGAGC 0.461493 -35 AGAGCAAAGCGATGGGGAGGAGCGGCGCCA 39 154 1 GATGGGGAGG 0.832306 -20 CCACAAAACGGGCGGCGGCGA 41 2 0 GGCGGCGGCG 0.898913 -282 TGTGGATTCCGCTGCCGGGAAAATCACCAG 41 45 1 GCTGCCGGGA 0.935817 -239 GGAAAGGCGGGCCGCGGTGCAGACACGCGA 41 123 0 GCCGCGGTGC 0.873249 -161 GAAGGGAACCGCCGCGGGACCGCCCCGGCA 41 169 0 GCCGCGGGAC 0.695725 -115 CGTCTGCCGCGATGCCGGACCCGGGAGGAA 41 205 0 GATGCCGGAC 0.780793 -79 GGCATCGGCTGAAGCCGGGCCCTGGCGTCT 41 230 0 GAAGCCGGGC 0.725166 -54 GGCTTCAGCCGATGCCGGGCGAACAACCGA 41 244 1 GATGCCGGGC 0.975438 -40 CGGCGTTTCGGCAGCCGGCGTCGGCCGTCC 42 41 1 GCAGCCGGCG 0.714256 -44 AAGCCTAATGGGTGGCCGGACGGCCGACGC 42 58 0 GGTGGCCGGA 0.807658 -27 TCGAACGCGTGCTGTCCGGCGGG 44 4 0 GCTGTCCGGC 0.381945 -211 CTGGCCGAGTGCTACCGTCGAACGCGTGCT 44 21 0 GCTACCGTCG 0.412157 -194 GGGGTCGACGGCTGGCCGAGTGCTACCGTC 44 32 0 GCTGGCCGAG 0.781874 -183 GCCAGACTCCGCCGGCGGGCCGTTGCAGAC 44 86 0 GCCGGCGGGC 0.912173 -129 CCTCGATCAGGCTGGCGGCAGGCCTGGTCC 44 133 0 GCTGGCGGCA 0.854624 -82 GACGCGGTGCCGCCGCGGGC 47 1 1 GACGCGGTGC 0.823022 -236 ACGCGGTGCCGCCGCGGGCGATACGCTCCG 47 12 1 GCCGCGGGCG 0.942782 -225 ACCCGGAGATGCTGGCCGCGGCGGCGACAG 47 83 1 GCTGGCCGCG 0.953132 -154 CTGACCTGATGCCGCCCAAGTCTGTCGCCG 47 104 0 GCCGCCCAAG 0.590445 -133 CGTCCTCTGCGGTGACCTGGCTGGTAGCTT 47 154 1 GGTGACCTGG 0.56459 -83 GGTGCCGACCTGTGCCGCGT 47 227 0 GGTGCCGACC 0.851328 -10 GCTCACACCCGACGGGCAGAAAGAGGTGGC 48 41 1 GACGGGCAGA 0.482296 -33 GGCAGAAAGAGGTGGCGGCCGTGGCAACC 48 55 1 GGTGGCGGCC 0.913648 -19 CATCGTCGTCGACACGGGGCATT 50 4 0 GACACGGGGC 0.546866 -61 TGTCGACGACGATGCGGTGGGGGTACCACT 50 20 1 GATGCGGTGG 0.85654 -45 AGGCTATGACGACGCGCGGAAGAATATGCG 51 30 1 GACGCGCGGA 0.807436 -271 GCTGGCGCTGGATGGACGCCTTGCCCGCAC 51 163 0 GATGGACGCC 0.50884 -138 CTGCGACCTCGATGGGGTGGGAATCCGGGA 51 245 0 GATGGGGTGG 0.79639 -56 CGAGGTCGCAGCTGGCCGAGCAAGCGCTTG 51 264 1 GCTGGCCGAG 0.781874 -37 ********** Masking position 1 Map Score: 100.199 Number of sites scoring better than the average of aligned sites = 88980 Number in coding regions = 83867 Number in noncoding regions = 5113 Number of orfs with sites within 600 bp upstream = 1561 Fraction of orfs with sites within 600 bp upstream = 0.250723 Motif number 3 TCGTCGGATAGCGCTGGCCAACTCTGGG 1 8 0 GCGCTGGCCA 0.561832 -94 CGCAACCATGGCCCAGGTCTGGACGTACGCG 1 46 1 GCCCAGGTCG 0.983534 -56 GCCCTCGTGGCTGCAGGTCAGCAAGGTCCCA 5 95 1 CTGCAGGTCG 0.701882 -206 CGAGGAATCCCAGGTGGTCAGCTGTCGGTAA 5 174 1 CAGGTGGTCG 0.535663 -127 TCTGGTAAACCCCCAGGCCGGTGGGCGGTTG 5 243 1 CCCCAGGCCG 0.948067 -58 CGCGCGACGGTCGGTGGTCGCGCTAGCGT 5 282 1 TCGGTGGTCC 0.387864 -19 CGGCGACGATGCCGAGCGCAGCGATGAGGAG 9 67 1 GCCGAGCGCG 0.631867 -32 TCCGTATCGTGTGGGGGTCGGGCGCGCCAAT 11 22 1 GTGGGGGTCG 0.855285 -120 CTCAATACTGCCCCGGCCCGGTAGCCTCGCG 12 13 0 CCCCGGCCCG 0.940638 -23 TGCAAAAAGTCCGCAGGCCGTTGCCGAAATT 13 112 1 CCGCAGGCCT 0.305691 -163 GCCTAAGGGTCACTAGGTCCGCGCGATGGGC 15 142 1 CACTAGGTCG 0.47832 -32 GTAGTCGAGGGAGCTGGCCAGGTGGTGCTGC 16 28 1 GAGCTGGCCG 0.830556 -22 ATTTGGATCTGCCGTGCCCTCGTAATCTCGA 17 35 1 GCCGTGCCCC 0.717033 -43 GCGCGGCCCGGCCATACGGTC 18 1 1 GCGCGGCCCG 0.963766 -42 CGCTGACTACGCGCTGCTCCGGGGAAACGTA 20 47 1 GCGCTGCTCG 0.930868 -148 CACTTTATGCGCCGGGGCCCACGAATACGGA 20 93 1 GCCGGGGCCA 0.708956 -102 GTCCGGCCAGCCGCGGCACGGGATGCTGCCG 20 124 0 CCGCGGCACG 0.568562 -71 TGATCCGAGGGTGTGGGTCTCACCAGATCGG 20 156 1 GTGTGGGTCC 0.569552 -39 CAACAGGTTGGCCGGGGGCCCTGTTAGGGTG 23 65 1 GCCGGGGGCC 0.808774 -92 CCTTCTTCAAGACTAGGTCCCGTACCGGCAC 23 93 0 GACTAGGTCC 0.57003 -64 TTGCCGGCCCCAGGAGGTCAGCGCC 25 5 0 CAGGAGGTCG 0.722854 -193 GGACGGCGCAGACCGGGCCGCTTCGACTCAG 25 76 1 GACCGGGCCC 0.913561 -122 GGCCAATGTTGAGCAACTCCGGCGCGCGGGT 26 32 0 GAGCAACTCG 0.174843 -176 GTTGAGTGTTGCCGAGGTCGGGGATATAGCG 26 146 1 GCCGAGGTCG 0.966863 -62 CGGTGATTGGGTCTGATGAAGTTTG 26 193 0 GATTGGGTCG 0.260225 -15 TCAGTAGTAGGCCCGGGTTCCCGGCCAGCGT 27 68 1 GCCCGGGTTC 0.606022 -119 GGCTCGCCCAGCGGTGCCCGCGGGGGCTAAG 27 122 0 GCGGTGCCCC 0.742132 -65 GCAATCTAGATCGTGGCTCGCCCAGCGGTGC 27 136 0 TCGTGGCTCC 0.336186 -51 CGCGCGTTGCCCGGTCTCTCTGGC 28 4 1 GCGTTGCCCG 0.678679 -189 TGCTGGCGGTGCCGGGCTCCGCGGCGCAA 29 9 0 GCCGGGCTCG 0.962378 -292 CGATGGCAACGTCCAGGTCGGCGACCGCAAT 29 115 1 GTCCAGGTCG 0.842482 -186 GAATCTGCTTCTCCGGGTCGGTCAGATCGGC 29 243 1 CTCCGGGTCG 0.801971 -58 ACCCGATCGCCCCGGGGCCGCTGGATCGTGG 31 24 0 CCCGGGGCCC 0.906441 -81 CCGACTCGTGGAGCGACTCGGCGCCCTCAAA 32 98 1 GAGCGACTCG 0.294819 -127 GCCTCGCCGCGCTCAGGTCCCGTCGGGAGGC 32 175 0 GCTCAGGTCC 0.712046 -50 CCGTACGGGAGAATGGGTCGCCGCCTCGCCG 32 197 0 GAATGGGTCC 0.119882 -28 CGGCGCCGCTCTCCCCCGCAAGC 33 55 0 GCGCCGCTCC 0.721237 -13 GGGGCTGGTAGCGCAGGTGCGTGGTTCGAAG 36 28 1 GCGCAGGTGG 0.575306 -71 CGGAGGCGATGCGCAGGTCAGTTTATCTAAC 37 113 0 GCGCAGGTCG 0.985615 -188 CGCATCGCCTCCGTAGCTCAGGTGGATAGAG 37 131 1 CCGTAGCTCG 0.697084 -170 GCCTTCTAATCCCTAGGTCGCACGTTCGAGT 37 167 1 CCCTAGGTCC 0.714712 -134 TTCGAGTCGTGCCGGGGGCACTGTGGAAATA 37 191 1 GCCGGGGGCC 0.808718 -110 ACTGTGGAAATAGCAGGTCAGCATGGTGGCG 37 210 1 TAGCAGGTCG 0.51768 -91 ATCGTCGCCGGCGCGGGTCAATCGAAGATGC 39 15 0 GCGCGGGTCA 0.877777 -159 ATCGTCGCCGGCGCGGGTCACTGGCGCCGCT 39 68 0 GCGCGGGTCC 0.986841 -106 ATCGTCGCCGGCGCGGGTCACTGGCGCCGCT 39 121 0 GCGCGGGTCC 0.986841 -53 AAACTACTCGGCGCAGCTCGCATCGGCGGGC 41 87 1 GCGCAGCTCC 0.944089 -197 CGTGTCTGCACCGCGGCCCGCCTTTCCGGGA 41 126 1 CCGCGGCCCC 0.8495 -158 AAGGGAACCGCCGCGGGACCGCCCCGGCATG 41 167 0 CCGCGGGACG 0.753001 -117 GGGGATTTCCTCCCGGGTCCGGCATCGCGGC 41 199 1 TCCCGGGTCG 0.900906 -85 ATCGGCTGAAGCCGGGCCCTGGCGTCTGCCG 41 226 0 GCCGGGCCCG 0.952832 -58 CGTTTCGGCAGCCGGCGTCGGCCGTCCGGCC 42 44 1 GCCGGCGTCG 0.536449 -41 CGGGCGGAAAGCGTTGGTCTGCAACGGCCCG 44 70 1 GCGTTGGTCG 0.856522 -145 CGGTTTGTAGGACCAGGCCTGCCGCCAGCCT 44 124 1 GACCAGGCCG 0.9062 -91 CTGGGTTTTGGCCCGGTCCGGGCTGGATGTT 44 182 1 GCCCGGTCCG 0.635606 -33 CGGTTTACTGTAGGAGGTCTC 45 82 1 TAGGAGGTCC 0.225354 -11 GTCTGTCGCCGCCGCGGCCAGCATCTCCGGG 47 84 0 GCCGCGGCCG 0.780792 -153 ACCTGATGCCGCCCAAGTCTGTCGCCGCCGC 47 100 0 GCCCAAGTCG 0.671833 -137 ACTTGGGCGGCATCAGGTCAGGGATCAGCGC 47 113 1 CATCAGGTCG 0.257768 -124 TCGAGACGCGGCACAGGTCGGCACC 47 222 1 GCACAGGTCG 0.756703 -15 TGCACTCCTGCGGGTTCGCTACCTAAGC 49 37 0 CTGCGGGTTG 0.0985093 -18 TGCCCGCACAGCCCGGCCCAGGTGCAGGATC 51 141 0 GCCCGGCCCG 0.976557 -160 CTGGATGGACGCCTTGCCCGCACAGCCCGGC 51 155 0 GCCTTGCCCC 0.505408 -146 ********* * Masking position 9 Map Score: 54.4314 Number of sites scoring better than the average of aligned sites = 33315 Number in coding regions = 30934 Number in noncoding regions = 2381 Number of orfs with sites within 600 bp upstream = 1134 Fraction of orfs with sites within 600 bp upstream = 0.182139 Motif number 4 TCGTCGGATAGCGCTGGCCAACTCTGGG 1 7 0 GCGCTGGCAC 0.489224 -95 ACGATCAGCAGCGCAACCATGGCCCAGGTCTG 1 35 1 GCGCAACCGG 0.611788 -67 GCCTACCGCTGCACCTGCGGCGACGAATTG 5 9 0 GCACCTGCCG 0.845629 -292 GGCGTCACCGGCGCCAGCACAGTGGCATGGGA 5 38 1 GCGCCAGCAG 0.909766 -263 CGATGCGAACCCGACAGCCACAGCCCTCGTGG 5 73 1 CCGACAGCCA 0.436928 -228 TTCTGGATTACCGACAGCTGACCACCTGGGAT 5 180 0 CCGACAGCAC 0.413438 -121 CGACCGTCGCGCGCCAGCAGGCAACCGCCCAC 5 263 0 GCGCCAGCGC 0.991833 -38 ACGCTAGCGCGACCACCGACCGTCGCGC 5 283 0 GCGCGACCCG 0.452181 -18 GGCGGTCATGGCGTCACCCTACCCAAGCCGAA 9 36 0 GCGTCACCAC 0.385257 -63 GACGCCATGACCGCCGGCGACGATGCCGAGCG 9 53 1 CCGCCGGCCG 0.909462 -46 GGGTGCTTTTGCGTCTGCTCGGCAGA 14 5 0 GCGTCTGCGG 0.91079 -77 TGGCGCTTTTGCGTCTGCTCGCGCATTTGAGG 14 53 1 GCGTCTGCGC 0.917544 -29 ATGTCTCGTTGCGTTAGCTAGCGTAGACGCTA 15 67 0 GCGTTAGCGC 0.790841 -107 GGCAGCACCACCTGGCCAGCTCCCTC 16 34 0 GCACCACCGC 0.856363 -16 CGCAACCATTTCGACAGCCGGCGCTGACAGT 19 41 1 TCGACAGCGC 0.564501 -21 CTAATCCTCCGCACCAGCAGCAAATTTCACGA 20 14 1 GCACCAGCCA 0.61518 -181 TTCAAGCCCCGCGGCACCTACCGTTGACTT 21 12 1 GCGGCACCCC 0.502057 -20 GCGCGCCGCAGCGATACCTTGCCCAACCAACA 23 38 1 GCGATACCGC 0.635436 -119 TCAGGGCCATGCGATTCCTCCCTTGGGATCGG 25 166 0 GCGATTCCCC 0.393456 -32 CCAATGTTGAGCAACTCCGGCGCGCGGGTGTT 26 29 0 GCAACTCCCG 0.279288 -179 GCATTGCGCGGCGCCTGCTGGCAGTCGGTGAA 28 74 0 GCGCCTGCGC 0.986401 -119 GCCGCGCAATGCGCTTGCAGGACTTCAACTAG 28 94 1 GCGCTTGCGA 0.701722 -99 GAGCCCGGCACCGCCAGCAGTGCCTCGCGGAT 29 21 1 CCGCCAGCTG 0.507925 -280 AGCGTGACAGGCGTCTGCTAGGACCCGATCGC 31 45 0 GCGTCTGCGG 0.910797 -60 TTCTGAGGGCGCGACAGGTGGCCGGAGTGGG 32 10 0 GCGACAGGGC 0.517629 -215 GGTGTAGCTGCCGATAGCGTCGCGGTGTGCCG 32 42 1 CCGATAGCCG 0.474581 -183 GTGTGCCGCGGCGTCCGCGCGGTCGCTCGTGC 32 66 1 GCGTCCGCGG 0.685672 -159 CAGGGCGTTTTCGATTGCGCGCATCGTGGCGG 32 130 0 TCGATTGCGC 0.135731 -95 GAATGGGTCGCCGCCTCGCCGCGCTCAGGTCC 32 186 0 CCGCCTCGGC 0.296295 -39 GGGGTACCGCCCGCTTGCGGGGGAGAGCGGCG 33 43 1 CCGCTTGCGG 0.819712 -25 ATTATTGCCTGCGCTAGCGTGA 34 1 0 GCGCTAGCGA 0.797539 -29 CCACGCACCTGCGCTACCAGCCCCCCTGTTAA 36 20 0 GCGCTACCCC 0.850858 -79 GTGTCAAGCCACGCCACCATGCTGACCTGCTA 37 220 0 ACGCCACCGC 0.500294 -81 CGGGCACCTCCGTGGTTTGAGTTTG 37 286 0 GCACCTCCGG 0.765588 -15 GCTGCCACGACCGCCACCCCGCACCTGCGTAA 38 21 1 CCGCCACCGC 0.938261 -32 CGATTGACCCGCGCCGGCGACGATGCAGAGCA 39 22 1 GCGCCGGCCG 0.967556 -152 GGGAGGAGCGGCGCCAGTGACCCGCGCCGGCG 39 62 1 GCGCCAGTCC 0.694253 -112 CCAGTGACCCGCGCCGGCGACGATGCAGAGCA 39 75 1 GCGCCGGCCG 0.967556 -99 GGGAGGAGCGGCGCCAGTGACCCGCGCCGGCG 39 115 1 GCGCCAGTCC 0.694253 -59 CCAGTGACCCGCGCCGGCGACGATGCAGAGCA 39 128 1 GCGCCGGCCG 0.967556 -46 GCCGGGAAAATCACCAGCTGGGTCGGTGTAAA 41 58 1 TCACCAGCGG 0.452089 -226 GGCGCAGCTCGCATCGGCGGGCTGACTTCGCG 41 96 1 GCATCGGCGC 0.514001 -188 TCCGGGATCCGCAACAGCATGCCGGGGCGGTC 41 150 1 GCAACAGCGC 0.753386 -134 CCGGGCCCTGGCGTCTGCCGCGATGCCGGACC 41 214 0 GCGTCTGCCG 0.86418 -70 CCAACGCTTTCCGCCCGCGCGAATCGGGGTCG 44 55 0 CCGCCCGCGA 0.46057 -160 ATGCCAGACTCCGCCGGCGGGCCGTTGCAGAC 44 86 0 CCGCCGGCGC 0.946123 -129 ACCAGGCCTGCCGCCAGCCTGATCGAGGGCTA 44 135 1 CCGCCAGCGA 0.867381 -80 ACCTAAGCAAGCACTTGCTTGGTACGCTAGCA 49 13 0 GCACTTGCGG 0.640722 -42 TATGCGCAATCCGCCAGAATGCCCAGAACGCT 51 54 1 CCGCCAGAGC 0.410384 -247 CGTCCATCCAGCGCCAGCAACGTCGCATCTAA 51 175 1 GCGCCAGCCG 0.985801 -126 TGAGCGAAGGGCGCATCCCTCGTACCGAATTC 51 215 1 GCGCATCCCG 0.36968 -86 TATCAACCAAGCGCTTGCTCGGCCAGCTGCGA 51 269 0 GCGCTTGCGG 0.931024 -32 ******** ** Masking position 2 Map Score: 64.812 Number of sites scoring better than the average of aligned sites = 30598 Number in coding regions = 28679 Number in noncoding regions = 1919 Number of orfs with sites within 600 bp upstream = 993 Fraction of orfs with sites within 600 bp upstream = 0.159492 Motif number 5 GCCGGCGACGATGCCGAGCGCAGCGATGAG 9 65 1 ATGCCGAGCG 0.947072 -34 GAGCGCAGCGATGAGGAGGAGCGGCGCAT 9 80 1 ATGAGGAGGA 0.665835 -19 TCTGCCGAGCAGACGCAAAAG 14 2 1 CTGCCGAGCA 0.905265 -80 CAATTTGGATCTGCCGTGCCCTCGTAATCT 17 33 1 CTGCCGTGCC 0.729207 -45 GTAGCGGCATACGGCGTGCGAACTCTGCTG 19 12 0 ACGGCGTGCG 0.623459 -50 TTTGCTGCTGGTGCGGAGGATTAGGCA 20 8 0 GTGCGGAGGA 0.893813 -187 GCGCGCCGAGCGGCCCATAACA 26 3 1 GCGCCGAGCG 0.789253 -205 CCAGCGGTGCCCGCGGGGGCTAAGGTTTAT 27 116 0 CCGCGGGGGC 0.784575 -71 TTGCGCCGCGGAGCCCGGCACCGCC 29 6 1 CCGCGGAGCC 0.851079 -295 TCCCGTCGGGAGGCCGAGGATCAGGGTCAG 32 159 0 AGGCCGAGGA 0.692769 -66 TCCGCGACGATGCAGAGCGCAGCGATGCG 33 10 1 ATGCAGAGCG 0.851078 -58 GAGCGCAGCGATGCGGTGGGGGTACCGCCC 33 25 1 ATGCGGTGGG 0.939698 -43 TACCGCCCGCTTGCGGGGGAGAGCGGCGCC 33 47 1 TTGCGGGGGA 0.523796 -21 CGTTCGAGTCGTGCCGGGGGCACTGTGGAA 37 189 1 GTGCCGGGGG 0.754512 -112 GCCGGCGACGATGCAGAGCAAAGCGATGGG 39 34 1 ATGCAGAGCA 0.8537 -140 GAGCAAAGCGATGGGGAGGAGCGGCGCCAG 39 49 1 ATGGGGAGGA 0.879578 -125 GCCGGCGACGATGCAGAGCAAAGCGATGGG 39 87 1 ATGCAGAGCA 0.8537 -87 GAGCAAAGCGATGGGGAGGAGCGGCGCCAG 39 102 1 ATGGGGAGGA 0.879578 -72 GCCGGCGACGATGCAGAGCAAAGCGATGGG 39 140 1 ATGCAGAGCA 0.8537 -34 GAGCAAAGCGATGGGGAGGAGCGGCGCCA 39 155 1 ATGGGGAGGA 0.879578 -19 GAAAGGCGGGCCGCGGTGCAGACACGCGAA 41 122 0 CCGCGGTGCA 0.840372 -162 CCGCAACAGCATGCCGGGGCGGTCCCGCGG 41 158 1 ATGCCGGGGC 0.865588 -126 GCTTCAGCCGATGCCGGGCGAACAACCGAC 41 245 1 ATGCCGGGCG 0.902819 -39 GGCTGCCGAAACGCCGTGGATACATCGTTG 42 27 0 ACGCCGTGGA 0.898707 -58 GACGCGGTGCCGCCGCGGGCG 47 2 1 ACGCGGTGCC 0.847731 -235 CCGACCGTCAACGAGGAGGACGGCCATGTG 47 39 1 ACGAGGAGGA 0.607412 -198 AGCCAGGTCACCGCAGAGGACGCGCATAGG 47 146 0 CCGCAGAGGA 0.74417 -91 GTCGACGACGATGCGGTGGGGGTACCACTC 50 21 1 ATGCGGTGGG 0.939698 -44 TGCGACCTCGATGGGGTGGGAATCCGGGAA 51 244 0 ATGGGGTGGG 0.784702 -57 ********** Masking position 6 Map Score: 29.3894 Number of sites scoring better than the average of aligned sites = 4094 Number in coding regions = 3711 Number in noncoding regions = 383 Number of orfs with sites within 600 bp upstream = 335 Fraction of orfs with sites within 600 bp upstream = 0.0538066 Motif number 6 CCGTCGCGCGCCAGCAGGCAACCGCCCACCGGCCTGGGG 5 253 0 CCGGCACGCC 0.905052 -48 CCTACCCAAGCCGAACGCGAAACGAGAACGTGTTCCATT 9 12 0 CCGCGACGGC 0.98414 -87 CGCGCCCGACCCCCACACGATACGGAAGGCAGCTGAA 11 9 0 CCACGACGAG 0.746286 -133 GCCGCGAGGCTACCGGGCCGGGGCAGTATT 12 2 1 CCGGCTCGGG 0.726008 -34 TGACGCCCTACCGTCGTCCAGGCGGTGTCAACGGCGCAG 13 209 0 CCTCCACGTC 0.717226 -66 ACCTAGTGACCCTTAGGCCTCCCGATACCTCCTGAAATG 15 121 0 CCGCCTCGTC 0.920129 -53 AAGTGTTTCTCCTTGTGGGATACGTTTCCCCGGAGCAGC 20 59 0 CCGGGACGTC 0.979867 -136 CCTCGGATCACGTCCGGCCAGCCGCGGCACGGGATGCTG 20 127 0 CGGCCACGGA 0.760859 -68 CTTCAAGCCCCGCGGCACCTACCGTTGACTT 21 11 1 CGACCTCGTC 0.667499 -21 CGAGCCTATCCGGGCGACGATGCGCGCCGCAGCGATACC 23 17 1 CGACGACGGG 0.838306 -140 CACCCGGCGTCCCGTAGCGAAACGGACTCTACTCCAATG 25 38 1 CCGCGACGAC 0.925119 -160 CGGGCCGCTTCGACTCAGGAAGCGATCTCCGTCGCGAAA 25 89 1 CGAGGACGTC 0.894244 -109 AAACCTTAGCCCCCGCGGGCACCGCTGGGCGAGCCACGA 27 118 1 CCGGGCCGTG 0.595838 -69 TGGTCAAACTCTTCAGGGGAGGCGAGGCCC 27 167 1 CTGGGACGGC 0.672229 -20 TTGCCCGGTCTCTCTGGCGAATCGCTGGCAAAGCGTTAG 28 17 1 TCGCGACGTC 0.867149 -176 TTGCGCGGCGCCTGCTGGCAGTCGGTGAACGGTCTGCCC 28 64 0 CCGGCACGTA 0.876892 -129 TGCCAGCAGGCGCCGCGCAATGCGCTTGCAGGACTTCAA 28 83 1 CGGCAACGTC 0.521958 -110 CTCTTCGACCAGCCATTCGTTTTGCCCGAATGGT 28 169 0 CGGCCACGTG 0.914984 -24 CCAAGGTGGTCGTGATACCACTCGATGGCAACGTCCAGG 29 93 1 CGACCACGTC 0.917225 -208 GTGACAGGCGTCTGCTAGGACCCGATCGCCCCGGGGCCG 31 35 0 TCAGGACGTC 0.664149 -70 CCCACTCCGGCCACCTGTCGCGCCCTCAGAAGGTG 32 7 1 CCACCTCGGC 0.816964 -218 GGTGTAGCTGCCGATAGCGTCGCGGTGTGCCGCGGCGTC 32 42 1 CCGCGTCGTG 0.872653 -183 GGCGCCGAGTCGCTCCACGAGTCGGGCACGAGCGACCGC 32 84 0 CGACGACGGC 0.915119 -141 CGCCCTCAAACCCGCCACGATGCGCGCAATCGAAAACGC 32 119 1 CCACGACGGA 0.848658 -106 GCCGCTCTCCCCCGCAAGCGGGCGGTACCCCCACCGCAT 33 35 0 CCAGCGCGTC 0.701998 -33 AGGAATTTTTCCAGACGCCACACGCGCGAAAGGTCTACC 37 63 0 CCGCCACGGA 0.89979 -238 TGGGCGTCGACCCATAACGAGGCGGTGTCAAGCCACGCC 37 237 0 CCACGACGTC 0.975236 -64 GGAGGAAATCCCCGAAGGGAACCGCCGCGGGACCGCCCC 41 173 0 CCGGGACGCG 0.851095 -111 GTATCCACGGCGTTTCGGCAGCCGGCGTCGGCCGTCCGG 42 34 1 CGGGCACGCC 0.769729 -51 CCCGCCGGACAGCACGCGTTCGACGGTAGCACT 44 5 1 CCAGCACGTA 0.778538 -210 AACGCTTTCCGCCCGCGCGAATCGGGGTCGACGGCTGGC 44 46 0 GCGCGACGGC 0.696423 -169 ATGCCAGACTCCGCCGGCGGGCCGTTGCAGACCAACGCT 44 79 0 CCGCGGCGTA 0.638862 -136 CGCGGTGCCGCCGCGGGCGATACGCTCCGACCGTCAACG 47 13 1 CCGCGACGTG 0.974519 -224 AGCCAGGTCACCGCAGAGGACGCGCATAGGCGGCGCTGA 47 137 0 CCAGGACGAG 0.642845 -100 TCTCGAGTTCTCTGGCAGCACCCGGTGTCGATAAAGACG 47 189 0 TCAGCACGTC 0.613262 -48 ATGCCCCGTGTCGACGACGATGCGGTGGGGGTACCACTC 50 12 1 TCACGACGTG 0.608472 -53 CCGACCAGACTATCAACCAAGCGCTTGCTCGGCCAGCT 51 273 0 CTACCACGTC 0.630606 -28 ** **** ** * * Masking position 13 Map Score: 49.2557 Number of sites scoring better than the average of aligned sites = 7815 Number in coding regions = 7195 Number in noncoding regions = 620 Number of orfs with sites within 600 bp upstream = 478 Fraction of orfs with sites within 600 bp upstream = 0.0767748 Motif number 7 TAAACCCCCAGGCCGGTGGGCGGTTGCCTG 5 248 1 GGCCGGTGGG 0.68179 -53 GTGGGCGGTTGCCTGCTGGCGCGCGACGGT 5 263 1 GCCTGCTGGC 0.872878 -38 ACGAGGATCGGGATGGTGGCCTG 6 80 1 GGATGGTGGC 0.927182 -13 CCGGCCAATTGTATGGTCGCCCTATGAGTA 7 14 1 GTATGGTCGC 0.893032 -30 GCTGCGCTCGGCATCGTCGCCGGCGGTCAT 9 59 0 GCATCGTCGC 0.871538 -40 TACTGCCCCGGCCCGGTAGCCTCGCGGC 12 9 0 GCCCGGTAGC 0.714819 -27 TGTCGTTACTGGCGGGTAGCTTCTGAAACG 13 53 1 GGCGGGTAGC 0.575008 -222 GTGCTTTTGCGTCTGCTCGGCAGA 14 5 0 GTCTGCTCGG 0.712306 -77 GCGCTTTTGCGTCTGCTCGCGCATTTGAGG 14 55 1 GTCTGCTCGC 0.870268 -27 CCCGTGCCGCGGCTGGCCGGACGTGATCCG 20 133 1 GGCTGGCCGG 0.904901 -62 GCTGCGGCGCGCATCGTCGCCCGGATAGGC 23 20 0 GCATCGTCGC 0.871538 -137 CCAACCAACAGGTTGGCCGGGGGCCCTGTT 23 60 1 GGTTGGCCGG 0.593865 -97 CCTACCGGTTGGTTGGTAGCGTCGCCGATC 25 142 1 GGTTGGTAGC 0.751961 -56 GGGTGTTATGGGCCGCTCGGCGCGC 26 6 0 GGCCGCTCGG 0.693666 -202 ATCGTTGAGCGGATGTTCGCACAGCTCGTA 27 39 0 GGATGTTCGC 0.791536 -148 ATTGCGCGGCGCCTGCTGGCAGTCGGTGAA 28 74 0 GCCTGCTGGC 0.872878 -119 TGGCCACGGCCGCTGTTCGCCTCGATTCTT 28 129 0 CGCTGTTCGC 0.264298 -64 CAAAACGAATGGCTGGTCGAAGAG 28 179 1 GGCTGGTCGA 0.86792 -14 CGTGACAGGCGTCTGCTAGGACCCGATCGC 31 45 0 GTCTGCTAGG 0.321695 -60 GCTGCGCTCTGCATCGTCGCGGA 33 4 0 GCATCGTCGC 0.871538 -64 TTAACAGGGGGGCTGGTAGCGCAGGTGCGT 36 20 1 GGCTGGTAGC 0.951755 -79 TAGCAGGTCAGCATGGTGGCGTGGCTTGAC 37 220 1 GCATGGTGGC 0.897941 -81 GCTTTGCTCTGCATCGTCGCCGGCGCGGGT 39 28 0 GCATCGTCGC 0.871538 -146 GCTTTGCTCTGCATCGTCGCCGGCGCGGGT 39 81 0 GCATCGTCGC 0.871538 -93 GCTTTGCTCTGCATCGTCGCCGGCGCGGGT 39 134 0 GCATCGTCGC 0.871538 -40 CTCATGTGTCGGTTGTTCGCCCGGCATCGG 41 252 0 GGTTGTTCGC 0.591328 -32 CGGGGTCGACGGCTGGCCGAGTGCTACCGT 44 33 0 GGCTGGCCGA 0.621916 -182 CCCTCGATCAGGCTGGCGGCAGGCCTGGTC 44 134 0 GGCTGGCGGC 0.887663 -81 GCGGTGACCTGGCTGGTAGCTTAGGCACGT 47 162 1 GGCTGGTAGC 0.951755 -75 TGCTGGCGCTGGATGGACGCCTTGCCCGCA 51 164 0 GGATGGACGC 0.665794 -137 TCAACCAAGCGCTTGCTCGGCCAGCTGCGA 51 269 0 GCTTGCTCGG 0.56676 -32 TTGGTTGATAGTCTGGTCGG 51 291 1 GTCTGGTCGG 0.884276 -10 ********** Masking position 9 Map Score: 41.7587 Number of sites scoring better than the average of aligned sites = 8148 Number in coding regions = 7460 Number in noncoding regions = 688 Number of orfs with sites within 600 bp upstream = 517 Fraction of orfs with sites within 600 bp upstream = 0.0830389 Motif number 8 CAGCGCTATCCGACGATCAGCAGCGCAACC 1 23 1 CGACGATCAG 0.971733 -79 CGGTGATAACCGCGATCCTAGTCACCCGG 4 76 0 CCGCGATCCT 0.88179 -19 TGGGATTCCTCGGGGATCCCCGACACGGAT 5 156 0 CGGGGATCCC 0.819924 -145 GTTAGTCGAACGAGGATCGGGATGGTGGCC 6 71 1 CGAGGATCGG 0.785606 -22 GTAAGTTAGTCCTCGATACGGTTACGTGTA 11 52 0 CCTCGATACG 0.544844 -90 TGTTTTCTCCGTTGATCAGTTCGGGGGAT 11 123 0 CGTTGATCAG 0.634023 -19 ATCCGCAGGACGTCGATCCGTGGGTTTACC 13 15 1 CGTCGATCCG 0.963036 -260 CCTATCCGGGCGACGATGCGCGCCGCAGCG 23 21 1 CGACGATGCG 0.902197 -136 AACATCCGCTCAACGATCAGTAGTAGGCCC 27 52 1 CAACGATCAG 0.826878 -135 GCTGGCGGTGCCGGGCTCCGCGGCGCAA 29 9 0 CCGGGCTCCG 0.867916 -292 AGGAAATCAACGACGATCAGGGCATCCGCG 29 46 0 CGACGATCAG 0.971733 -255 TCCTCGTGGACCAGGATCATGCCAAGGTGG 29 72 1 CCAGGATCAT 0.734487 -229 ACCCGCCATCCCACGATCCAGCGGCCCCGG 31 14 1 CCACGATCCA 0.740009 -91 CTCAAACCCGCCACGATGCGCGCAATCGAA 32 123 1 CCACGATGCG 0.910152 -102 GTCGGGAGGCCGAGGATCAGGGTCAGGGCG 32 155 0 CGAGGATCAG 0.955248 -70 CGCCGCCTCGCCGCGCTCAGGTCCCGTCGG 32 180 0 CCGCGCTCAG 0.867816 -45 GTACGTGTGTCGAGGATCACACAATAACCA 37 19 1 CGAGGATCAC 0.731137 -282 GCCCGCCTTTCCGGGATCCGCAACAGCATG 41 141 1 CCGGGATCCG 0.975152 -143 GCATCTTAGCCCTCGATCAGGCTGGCGGCA 44 143 0 CCTCGATCAG 0.946591 -72 GGCATCAGGTCAGGGATCAGCGCCGCCTAT 47 121 1 CAGGGATCAG 0.754669 -116 CCCGTGTCGACGACGATGCGGTGGGGGTAC 50 16 1 CGACGATGCG 0.902197 -49 CAGATGTCTCCCGTGATCAGGTACCAAGCC 51 107 1 CCGTGATCAG 0.8078 -194 GTACCAAGCCCCTCGATCCTGCACCTGGGC 51 127 1 CCTCGATCCT 0.771507 -174 ********** Masking position 7 Map Score: 25.8297 Number of sites scoring better than the average of aligned sites = 4491 Number in coding regions = 4218 Number in noncoding regions = 273 Number of orfs with sites within 600 bp upstream = 242 Fraction of orfs with sites within 600 bp upstream = 0.0388693 Motif number 9 CGTCACCGGCGCCAGCACAGTGGCATGGGACTTC 5 40 1 GCACACGTGC 0.966989 -261 ACCTGCAGCCACGAGGGCTGTGGCTGTCGGGTTC 5 79 0 ACAGGCGTGC 0.967966 -222 CCTCGGTACAGCGATGGCTTTGGCAGGCTGCGGT 6 39 1 GCAGGCTTGC 0.981331 -54 CCCTACCGTCGTCCAGGCGGTGTCAACGGCGCAG 13 209 0 GTCGGCGTGC 0.788881 -66 ATGAAAGACCGTTAAGGAGTTGTCT 13 260 1 GTAGGATTGC 0.549363 -15 ACCTTGCCCAACCAACAGGTTGGCCGGGGGCCCT 23 53 1 ACACAGTTGC 0.231177 -104 CCCCATAAAGGCTAACGCTTTGCCAGCGATTCGC 28 33 0 GCACGCTTGC 0.96833 -160 TTGAAGTCCTGCAAGCGCATTGCGCGGCGCCTGC 28 88 0 GCACGCTTGG 0.632543 -105 ATCGAGGCGAACAGCGGCCGTGGCCAACATAAGT 28 133 1 ACGGGCGTGC 0.930553 -60 GAGTGGTATCACGACCACCTTGGCATGATCCTGG 29 82 0 ACACACTTGC 0.821459 -219 GCGGTCGCCGACCTGGACGTTGCCATCGAGTGGT 29 109 0 ACTGACTTGC 0.546531 -192 TCTGGAATCAGTCAAGACTTTGGCTAGCGTGACA 31 68 0 GTAGACTTGC 0.862587 -37 GAGGATCAGGGTCAGGGCGTTTTCGATTGCGCGC 32 140 0 GTAGGCTTTC 0.368348 -85 CTGACCTGCTATTTCCACAGTGCCCCCGGCACGA 37 197 0 ATTCACGTGC 0.283564 -104 GAAATAGCAGGTCAGCATGGTGGCGTGGCTTGAC 37 216 1 GTACATGTGC 0.276558 -85 TCAAACTCAAACCACGGAGGTGCCCG 37 285 1 ACAGGAGTGC 0.701594 -16 ATGGGGAGGAGCGGCGCCAGTGACCCGCGCCGGC 39 59 1 GCGGCCGTGC 0.899527 -115 ATGGGGAGGAGCGGCGCCAGTGACCCGCGCCGGC 39 112 1 GCGGCCGTGC 0.899527 -62 GGAATCCACAGCGACGACATTGTCCACAAAACGG 41 21 0 GCAGACTTGC 0.964383 -263 GGCCAACACTGTGGCACAACGATGT 42 2 1 GCACACGTGC 0.939342 -83 GGAGACTATCGCAACGGCAGTGCCGC 46 15 1 GCAGGCGTGC 0.989691 -16 GCAGAAAGAGGTGGCGGCCGTGGCAACC 48 56 1 GTGGGCGTGC 0.919425 -18 ** * *** *** * Masking position 11 Map Score: 16.4049 Number of sites scoring better than the average of aligned sites = 9530 Number in coding regions = 9033 Number in noncoding regions = 497 Number of orfs with sites within 600 bp upstream = 390 Fraction of orfs with sites within 600 bp upstream = 0.0626405 Motif number 10 CCGAGACCTAACCGGCGGCCCCGAA 2 3 1 GGACCACCGG 0.926344 -86 CTACGAGGCTGGGACCTTGCTGACCTGCAGCCA 5 102 0 GGACCGCTGA 0.740888 -199 ATGACCGCCGGCGACGATGCCGAGCGCAGCGAT 9 59 1 GGACGGCCGA 0.796785 -40 GCCGCGAGGCTACCGGGCCGGGGCAGTATTG 12 9 1 GTACCGCCGG 0.774136 -27 ATGGCACAGCGTGTCAACGCTGGTCCACCCATT 13 152 0 GGTCAGCTGG 0.912596 -123 CAGTACAGAGTGTCACAGCCGGACCGTATGGC 18 21 0 GGTCAGCCGG 0.955252 -22 ACTGTCAGCGCCGGCTGTCGAAAT 19 48 0 CGTCAGCCGG 0.897919 -14 GCAGCATCCCGTGCCGCGGCTGGCCGGACGTGA 20 126 1 GGCCGGCTGG 0.936946 -69 CAAGTCTAGTGAGACCGATCTGGTGAGACCCAC 20 168 0 GGACCTCTGG 0.651468 -27 ATGGACGGCGCAGACCGGGCCGCTTCGACTCAG 25 74 1 CGACCGCCGC 0.66924 -124 CCGAAACCTAGAGGCCCCACCCGTTCGATCACA 26 78 0 GGGCCACCCG 0.350641 -130 GTGTACCCGGATGACAACGCTGGCCGGGAACCC 27 82 0 AGACAGCTGG 0.414456 -105 TTAGCCCCCGCGGGCACCGCTGGGCGAGCCACG 27 123 1 CGGCAGCTGG 0.831159 -64 GGGCATCCGCGAGGCACTGCTGGCGGTGCCGGG 29 24 0 GGGCAGCTGG 0.958204 -277 GAAAGCCGATCTGACCGACCCGGAGAAGCAGAT 29 245 0 CGACCCCCGG 0.869682 -56 GGCGCGACAGGTGGCCGGAGTGGG 32 2 0 GGGCCAGTGG 0.33408 -223 GGTCAGCATGGTGGCGTGGCTTGACACCGCCTC 37 225 1 GGGCGGCTTG 0.541838 -76 GCTTTGCTCTGCATCGTCGCCGGCGCGGGTCAA 39 25 0 GATCGGCCGG 0.732989 -149 GCTTTGCTCTGCATCGTCGCCGGCGCGGGTCAC 39 78 0 GATCGGCCGG 0.732989 -96 GCTTTGCTCTGCATCGTCGCCGGCGCGGGTCAC 39 131 0 GATCGGCCGG 0.732989 -43 GTAGTTTACACCGACCCAGCTGGTGATTTTCCC 41 61 0 CGACCGCTGG 0.962648 -223 GAACCGCCGCGGGACCGCCCCGGCATGCTGTTG 41 161 0 GGACCCCCGG 0.938222 -123 CCTGGCGTCTGCCGCGATGCCGGACCCGGGAGG 41 207 0 GCGCGGCCGG 0.791936 -77 GGCCCGGCTTCAGCCGATGCCGGGCGAACAACC 41 239 1 CGCCGGCCGG 0.898127 -45 GGTGGCCGGACGGCCGACGCCGGCTGCCGAAAC 42 45 0 CGCCGGCCGG 0.846555 -40 TGGGGCCGTACCGGTTGGGCCCCA 43 2 1 GGGCCACCGG 0.935785 -36 TCGTAAATGCCAGACTCCGCCGGCGGGCCGTTG 44 91 0 CGACTGCCGG 0.738581 -124 GATCAGGCTGGCGGCAGGCCTGGTCCTACAAAC 44 126 0 GGGCACCTGG 0.742414 -89 GGTTTTGGCCCGGTCCGGGCTGGATGTTTGGAG 44 185 1 CGTCCGCTGG 0.928018 -30 GCGGCACTGCCGTTGCGATAGTC 46 18 0 GGGCAGCCGT 0.532108 -13 CCCGGAGATGCTGGCCGCGGCGGCGACAGACTT 47 84 1 CGGCCGGCGG 0.762319 -153 GTCCTCTGCGGTGACCTGGCTGGTAGCTTAGGC 47 155 1 GGACCGCTGG 0.983857 -82 GGCATTAGATGCGACGTTGCTGGCGCTGGATGG 51 178 0 GGACGGCTGG 0.975787 -123 TCGGCCAGCTGCGACCTCGATGGGGTGGGAATC 51 250 0 GGACCGATGG 0.610634 -51 * **** ***** Masking position 5 Map Score: 50.6898 Number of sites scoring better than the average of aligned sites = 13901 Number in coding regions = 13145 Number in noncoding regions = 756 Number of orfs with sites within 600 bp upstream = 551 Fraction of orfs with sites within 600 bp upstream = 0.0884998 Motif number 11 TTTTCTATTGCTGGTTCAACCGGGTGACTAG 4 57 1 CGGTTCAACC 0.538503 -38 ATACGGGTATCTGGTAAACCCCCAGGCCGGT 5 234 1 CGGTAAACCC 0.845341 -67 CTGGCACACCCTACGGCCCGC 10 25 0 CGGCACACCC 0.880081 -11 GACAAATCCGCAGGTAAACCCACGGATCGAC 13 26 0 CGGTAAACCC 0.845341 -249 CGTGTCAACGCTGGTCCACCCATTTCACTTG 13 145 0 CGGTCCACCC 0.986595 -130 ACCGGTACGCGCAAAGCTGGGT 15 2 1 CGGTACGCGC 0.984554 -172 TAAGGGTCACTAGGTCCGCGCGATGGGCGGA 15 145 1 TGGTCCGCGC 0.854214 -29 GACCGTATGGCCGGGCCGCGC 18 1 0 CGGGCCGCGC 0.968435 -42 TCGAAGCGGCCCGGTCTGCGCCGTCCATTGG 25 71 0 CGGTCTGCGC 0.874136 -127 CGTTGTCATCCGGGTACACGATAAACCTTAG 27 96 1 CGGTACACGA 0.85749 -91 GCCAGAGAGACCGGGCAACGCGCG 28 4 0 CGGGCAACGC 0.809049 -189 TGGCATGATCCTGGTCCACGAGGAAATCAAC 29 65 0 CGGTCCACGA 0.929675 -236 GACGACCGATCAAGTCCACGCCCGTCACATG 29 185 0 CAGTCCACGC 0.824982 -116 CCGGGGCGATCGGGTCCTAGCAGACGCCTGT 31 40 1 CGGTCCTAGC 0.632399 -65 CTCCACGAGTCGGGCACGAGCGACCGCGCGG 32 80 0 CGGCACGAGC 0.636342 -145 GGAACCGCCGCGGGACCGCCCCGGCATGCTG 41 164 0 CGGACCGCCC 0.874753 -120 TGGGGCCCAACCGGTACGGCCCCA 43 4 0 CGGTACGGCC 0.842614 -34 GGGTTTTGGCCCGGTCCGGGCTGGATGTTTG 44 184 1 CGGTCCGGGC 0.949858 -31 TTGTGCTTTGACGGTACACGCGCTAAGGGGT 45 40 0 AGGTACACGC 0.692995 -53 CCAGCATCTCCGGGTTCACCAATGCAAACCA 47 67 0 CGGTTCACCA 0.509458 -170 AGCTACCAGCCAGGTCACCGCAGAGGACGCG 47 152 0 CGGTCACCGC 0.768523 -85 * ********* Masking position 4 Map Score: 20.222 Number of sites scoring better than the average of aligned sites = 3998 Number in coding regions = 3652 Number in noncoding regions = 346 Number of orfs with sites within 600 bp upstream = 275 Fraction of orfs with sites within 600 bp upstream = 0.0441696 Motif number 12 AACCGGCGGCCCCGAAGCGTAGTGATGTGCC 2 20 1 CCCGAACGTA 0.886836 -69 CAAAGCCATCGCTGTACCGAGGCGAAATTGC 6 30 0 GCTGTACGAG 0.57742 -63 CCAAGCCGAACGCGAAACGAGAACGTGTTCC 9 15 0 CGCGAACGAG 0.585519 -84 CGTCACCCTACCCAAGCCGAACGCGAAACGA 9 26 0 CCCAAGCGAA 0.305588 -73 AGCCTAGCGGGCCGTAGGGTGTGCCAG 10 19 1 GCCGTAGGTG 0.743082 -17 TCAGCTGCCTTCCGTATCGTGTGGGGGTCGG 11 12 1 TCCGTACGTG 0.508893 -130 AATACACGTAACCGTATCGAGGACTAACTTA 11 50 1 ACCGTACGAG 0.630212 -92 GAGTGTCACAGCCGGACCGTATGGCCGGGCC 18 15 0 GCCGGACGTA 0.664042 -28 ACGGCAGCATCCCGTGCCGCGGCTGGCCGGA 20 123 1 CCCGTGCGCG 0.716792 -72 CACCCGGCGTCCCGTAGCGAAACGGACTCTA 25 38 1 CCCGTACGAA 0.950222 -160 GAGATCGCTTCCTGAGTCGAAGCGGCCCGGT 25 87 0 CCTGAGCGAA 0.535921 -111 ATTCGTTTTGCCCGAATGGTGAACTTATGTT 28 158 0 CCCGAAGGTG 0.903919 -35 ACAACGGTAACCTGAAGGGAAAGAATCTGCT 29 221 1 CCTGAAGGAA 0.514133 -80 AACACCAACTCCTGGAAGGAATGCT 30 23 1 CCTGGAGGAA 0.562563 -15 CCCCGGGGCCGCTGGATCGTGGGATGGCGGG 31 15 0 GCTGGACGTG 0.405367 -90 ATCCAGCGGCCCCGGGGCGATCGGGTCCTAG 31 29 1 CCCGGGCGAT 0.537246 -76 GTCGCTCGTGCCCGACTCGTGGAGCGACTCG 32 87 1 CCCGACCGTG 0.82741 -138 GCGCTCAGGTCCCGTCGGGAGGCCGAGGATC 32 167 0 CCCGTCGGAG 0.873258 -58 GACCCATTCTCCCGTACGGTGGACGG 32 209 1 CCCGTAGGTG 0.933047 -16 TGGGCGTCGACCCATAACGAGGCGGTGTCAA 37 245 0 CCCATACGAG 0.715002 -56 GGAGGAAATCCCCGAAGGGAACCGCCGCGGG 41 181 0 CCCGAAGGAA 0.873253 -103 CGATGCCGGACCCGGGAGGAAATCCCCGAAG 41 195 0 CCCGGGGGAA 0.830074 -89 AAACATCCAGCCCGGACCGGGCCAAAACCCA 44 183 0 CCCGGACGGG 0.761456 -32 CCTCTTTCTGCCCGTCGGGTGTGAGCTTGTC 48 36 0 CCCGTCGGTG 0.807337 -38 AATGCCCCGTGTCGACGACGATGCGG 50 6 1 CCCGTGCGAC 0.672115 -59 GGGCGCATCCCTCGTACCGAATTCCCGGATT 51 223 1 CTCGTACGAA 0.387551 -78 ****** **** Masking position 9 Map Score: 12.6596 Number of sites scoring better than the average of aligned sites = 5041 Number in coding regions = 4555 Number in noncoding regions = 486 Number of orfs with sites within 600 bp upstream = 392 Fraction of orfs with sites within 600 bp upstream = 0.0629618 Motif number 13 CGAACGCGAAACGAGAACGTGTTCCATTA 9 9 0 ACGAGACGTG 0.955353 -90 TGGTGTGCTAACTCGACCATGGCACAGCGTG 13 172 0 ACTCGACATG 0.958174 -103 CTGGCAAGACTAGAACGTGTTGCAATTTG 17 9 1 ACTAGACGTG 0.985824 -69 TGACCAGCAATCTAGATCGTGGCTCGCCCAG 27 142 0 TCTAGACGTG 0.935222 -45 TGGTAACTGGACTCGATCACGTCGGTATTGC 29 141 0 ACTCGACACG 0.87576 -160 CCCCGGCACGACTCGAACGTGCGACCTAGGG 37 177 0 ACTCGACGTG 0.988232 -124 CAAACTAGAACGTGTTACATTTCT 48 4 1 ACTAGACGTG 0.985824 -70 ****** **** Masking position 6 Map Score: 5.10994 Number of sites scoring better than the average of aligned sites = 23 Number in coding regions = 15 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 14 TTACCAGATACCCGTATAGGGTATATATTTA 5 220 0 CCCGATAGGG 0.866182 -81 GGTAGTATGGCCCTCAACGGCCGATCCCCCG 11 100 1 CCCTAACGGC 0.862898 -42 CACTTTTGCGCCGCAAAAGGGTGCTTTTGCG 14 24 0 CCGCAAAGGG 0.836372 -58 CGCATCGTCGCCCGGATAGGCTCGACCGCC 23 10 0 CCCGATAGGC 0.968916 -147 CGTACCGGCACCCTAACAGGGCCCCCGGCCA 23 73 0 CCCTACAGGG 0.787481 -84 AAGACTAGGTCCCGTACCGGCACCCTAACAG 23 85 0 CCCGACCGGC 0.953029 -72 TCCACAAATTCCACAAAAGGGGGTTTGGATC 23 123 0 CCACAAAGGG 0.825878 -34 AACGGTCTGCCCCATAAAGGCTAACGCTTTG 28 45 0 CCCAAAAGGC 0.843913 -148 TTGACTGATTCCAGAAAAGGGAGTCATA 31 87 1 CCAGAAAGGG 0.923061 -18 ACGACATTGTCCACAAAACGGGCGGCGGCGA 41 11 0 CCACAAACGG 0.299742 -273 TGTTGCGGATCCCGGAAAGGCGGGCCGCGGT 41 135 0 CCCGAAAGGC 0.98092 -149 GGTTGTTCGCCCGGCATCGGCTGAAGCCGGG 41 241 0 CCGGATCGGC 0.837122 -43 AAACATCCAGCCCGGACCGGGCCAAAACCCA 44 183 0 CCCGACCGGG 0.71029 -32 CCGCAGAGGACGCGCATAGGCGGCGCTGATC 47 135 0 CGCGATAGGC 0.745886 -102 **** ****** Masking position 6 Map Score: 11.1026 Number of sites scoring better than the average of aligned sites = 921 Number in coding regions = 829 Number in noncoding regions = 92 Number of orfs with sites within 600 bp upstream = 95 Fraction of orfs with sites within 600 bp upstream = 0.0152586 Motif number 15 ACGCTAGCGCGACCACCGACCG 5 289 0 GCTAGCGCGA 0.710623 -12 TGGTCGATAGCCTAGCGGGCCGTAGGGTGT 10 11 1 CCTAGCGGGC 0.95375 -25 GCCGCGAGGCTACCGGGCCGGGGCAGTA 12 9 1 GCTACCGGGC 0.897288 -27 TAGCGTAGACGCTACCGTTGACAGGCTGAA 15 51 0 GCTACCGTTG 0.777483 -123 CGTTGCGTTAGCTAGCGTAGACGCTACCGT 15 63 0 GCTAGCGTAG 0.924565 -111 CCTGAAATGTCCTAACGTGCGTAGTAATCG 15 100 0 CCTAACGTGC 0.690742 -74 GGGCTCCAAGCGTAGTGATCCTTCG 17 63 0 CCAAGCGTAG 0.607705 -15 CCCCGCGGCACCTACCGTTGACTT 21 18 1 CCTACCGTTG 0.701798 -14 CGGGTTCCCGGCCAGCGTTGTCATCCGGGT 27 81 1 GCCAGCGTTG 0.65906 -106 GCGATCGGGTCCTAGCAGACGCCTGTCACG 31 45 1 CCTAGCAGAC 0.300253 -60 CAAGACTTTGGCTAGCGTGACAGGCGTCTG 31 60 0 GCTAGCGTGA 0.928774 -45 GCTCTCCCCCGCAAGCGGGCGGTACCCCCA 33 41 0 GCAAGCGGGC 0.850186 -27 TATTGCCTGCGCTAGCGTGA 34 1 0 GCTAGCGTGA 0.928774 -29 TGTGCTAGCGTACCAAGCAAGTG 49 4 1 GCTAGCGTAC 0.944381 -51 GCGGAGAGTGCCTAGCGTTCTGGGCATTCT 51 69 0 CCTAGCGTTC 0.919593 -232 ********** Masking position 4 Map Score: 8.03604 Number of sites scoring better than the average of aligned sites = 979 Number in coding regions = 835 Number in noncoding regions = 144 Number of orfs with sites within 600 bp upstream = 140 Fraction of orfs with sites within 600 bp upstream = 0.0224863