AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00380_mtub_reg_300.orf -o00380_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: trpS 24 trpS aldB 26 aldB Input sequences: #1 Rv0144 101 hypothetical protein Rv0144 #2 Rv0145 88 hypothetical protein Rv0145 #3 Rv0146 42 hypothetical protein Rv0146 #4 Rv0147 94 hypothetical protein Rv0147 #5 Rv0187 300 hypothetical protein Rv0187 #6 Rv0218 92 hypothetical protein Rv0218 #7 Rv0221 43 hypothetical protein Rv0221 #8 echA1 30 echA1 #9 Rv0223c 98 hypothetical protein Rv0223c #10 Rv0224c 35 hypothetical protein Rv0224c #11 fadA2 141 fadA2 #12 fadE7 35 fadE7 #13 Rv0466 151 hypothetical protein Rv0466 #14 aceA 274 aceA #15 fadB2 81 fadB2 #16 mmpS2 173 mmpS2 #17 hemA 49 hemA #18 Rv0552 77 hypothetical protein Rv0552 #19 menD 42 menD #20 Rv0557 61 hypothetical protein Rv0557 #21 end 194 end #22 lpqP 31 lpqP #23 fadE8 59 fadE8 #24 fadA 156 fadA #25 echA6 26 echA6 #26 Rv0976c 197 hypothetical protein Rv0976c #27 Rv1008 85 hypothetical protein Rv1008 #28 Rv1009 207 hypothetical protein Rv1009 #29 echA9 186 echA9 #30 sucA 192 sucA #31 Rv1249c 196 hypothetical protein Rv1249c #32 fadA4 300 fadA4 #33 katG 37 katG #34 furA 104 furA #35 Rv1910c 82 hypothetical protein Rv1910c #36 lppC 99 lppC #37 fadB5 99 fadB5 #38 cobG 224 cobG #39 cobL 67 cobL #40 Rv2073c 29 hypothetical protein Rv2073c #41 amiA2 61 amiA2 #42 mbtB 98 mbtB #43 echA14 300 echA14 #44 echA15 52 echA15 #45 Rv2689c 173 hypothetical protein Rv2689c #46 Rv2690c 134 hypothetical protein Rv2690c #47 echA16 46 echA16 #48 rpsB 283 rpsB #49 gatC 84 gatC #50 serB2 37 serB2 #51 ctaD 214 ctaD #52 Rv3174 92 hypothetical protein Rv3174 #53 Rv3292 30 hypothetical protein Rv3292 #54 Rv3371 191 hypothetical protein Rv3371 #55 otsB2 41 otsB2 #56 echA18 236 echA18 #57 echA19 73 echA19 #58 echA20 54 echA20 #59 fadA6 64 fadA6 #60 Rv3557c 300 hypothetical protein Rv3557c Motif number 1 ATCCGACGATCAGCAGCGCAACCATGGCCC 1 30 1 CAGCAGCGCA 0.854561 -72 CGTACGCGATCACCGCCGCTGTGCGGCGAG 1 69 1 CACCGCCGCT 0.932451 -33 GAGACCTAACCGGCGGCCCCGAAGCGTAGT 2 13 1 CGGCGGCCCC 0.979313 -76 CACCGGCATCACGAGAACCAGAG 3 4 1 CGGCATCACG 0.719652 -39 GTGACGCCTACCGCTGCACCTGCGGCGACG 5 16 0 CCGCTGCACC 0.700918 -285 CGGTAGGCGTCACCGGCGCCAGCACAGTGG 5 33 1 CACCGGCGCC 0.938765 -268 GACCTGCAGCCACGAGGGCTGTGGCTGTCG 5 84 0 CACGAGGGCT 0.486945 -217 CCTCGGGGATCCCCGACACGGATGAGGGTG 5 149 0 CCCCGACACG 0.821981 -152 TCTGGTAAACCCCCAGGCCGGTGGGCGGTT 5 243 1 CCCCAGGCCG 0.726534 -58 GACCGTCGCGCGCCAGCAGGCAACCGCCCA 5 264 0 CGCCAGCAGG 0.787481 -37 ACGCTAGCGCGACCACCGACCGTCGCG 5 284 0 CGCGACCACC 0.499594 -17 GGCGAAATTGCGCCGACGCATACTGGACCG 6 11 0 CGCCGACGCA 0.86958 -82 CAGGCCACCATCCCGATCCTCGTTC 6 78 0 CACCATCCCG 0.49517 -15 TCGGCATCGTCGCCGGCGGTCATGGCGTCA 9 52 0 CGCCGGCGGT 0.955162 -47 ACCCTACGGCCCGCTAGGCTATCGACCA 10 9 0 CCGCTAGGCT 0.615489 -27 GTGTGGGGGTCGGGCGCGCCAATACACGTA 11 30 1 CGGGCGCGCC 0.654533 -112 GCCGCGAGGCTACCGGGCCGG 12 2 1 CCGCGAGGCT 0.916974 -34 CTCAATACTGCCCCGGCCCGGTAGCCTCGC 12 14 0 CCCCGGCCCG 0.716701 -22 TTCACAACACCCGGTACGCTCGGTTGG 13 8 0 CCGGTACGCT 0.402719 -144 TTGGTGTTTCCGCCACGGCGTTGGCATGAT 13 72 1 CGCCACGGCG 0.51318 -80 GCATGATTCGCACCGGGACTCAAGGGTGAG 13 95 1 CACCGGGACT 0.620046 -57 CCGGATCCGCAGGACGTCGATCCGTG 14 7 1 CCGCAGGACG 0.901822 -268 TGCAAAAAGTCCGCAGGCCGTTGCCGAAAT 14 112 1 CCGCAGGCCG 0.824681 -163 GCGGTGTCAACGGCGCAGCTTCACTGGTGT 14 197 0 CGGCGCAGCT 0.837446 -78 CCGTTGACACCGCCTGGACGACGGTAGGGC 14 214 1 CGCCTGGACG 0.664535 -61 ACCGGTACGCGCAAAGCTGGG 16 2 1 CCGGTACGCG 0.521317 -172 CAGGAGGTATCGGGAGGCCTAAGGGTCACT 16 126 1 CGGGAGGCCT 0.756256 -48 GGCAGCACCACCTGGCCAGCTC 17 38 0 CAGCACCACC 0.630309 -12 GACCGTATGGCCGGGCCGCGC 19 2 0 CCGGGCCGCG 0.545841 -41 ACGCCGTATGCCGCTACGCAACCATTTCGA 20 25 1 CCGCTACGCA 0.579618 -37 ACTGTCAGCGCCGGCTGTCGAAATG 20 47 0 CAGCGCCGGC 0.866482 -15 GCCTAATCCTCCGCACCAGCAGCAAATTTC 21 12 1 CCGCACCAGC 0.660198 -183 CAGCAAATTTCACGAGCGCTGACTACGCGC 21 31 1 CACGAGCGCT 0.635995 -164 GGATACGTTTCCCCGGAGCAGCGCGTAGTC 21 51 0 CCCCGGAGCA 0.606201 -144 ACACTTTATGCGCCGGGGCCCACGAATACG 21 92 1 CGCCGGGGCC 0.965408 -103 GTCCGGCCAGCCGCGGCACGGGATGCTGCC 21 125 0 CCGCGGCACG 0.9732 -70 ACGGTAGGTGCCGCGGGGCTTGAAG 22 6 0 CCGCGGGGCT 0.980981 -26 TCGAGCCTATCCGGGCGACGATGCGCGCCG 24 16 1 CCGGGCGACG 0.746722 -141 CGACGATGCGCGCCGCAGCGATACCTTGCC 24 31 1 CGCCGCAGCG 0.787623 -126 ACAGGTTGGCCGGGGGCCCTGTTAGGGTGC 24 67 1 CGGGGGCCCT 0.924263 -90 GCTTTGCCGGCCCCAGGAGGTCAGCGCC 26 9 0 CCCCAGGAGG 0.635878 -189 GCAAAGCACCCGGCGTCCCGTAGCGAAACG 26 32 1 CGGCGTCCCG 0.52171 -166 ACGGCGCAGACCGGGCCGCTTCGACTCAGG 26 78 1 CCGGGCCGCT 0.944564 -120 CCCTTGGGATCGGCGACGCTACCAACCAAC 26 149 0 CGGCGACGCT 0.958654 -49 GCCAGGGGTTCCGGAGCGGGCGGTGGATCT 27 62 0 CCGGAGCGGG 0.835833 -24 CGGCGCCAGGGGTTCCGGAG 27 76 0 CGGCGCCAGG 0.897043 -10 GTGTTATGGGCCGCTCGGCGCGC 28 4 0 CCGCTCGGCG 0.556008 -204 CCCATAACACCCGCGCGCCGGAGTTGCTCA 28 24 1 CCGCGCGCCG 0.508997 -184 AACCTAGAGGCCCCACCCGTTCGATCACAA 28 77 0 CCCCACCCGT 0.772283 -131 TCCCCGACCTCGGCAACACTCAACCACCTA 28 140 0 CGGCAACACT 0.662944 -68 CAACGCTGGCCGGGAACCCGGGCCTACTAC 29 71 0 CGGGAACCCG 0.551375 -116 CCAGCGGTGCCCGCGGGGGCTAAGGTTTAT 29 116 0 CCGCGGGGGC 0.938925 -71 CCCGCGGGCACCGCTGGGCGAGCCACGATC 29 129 1 CCGCTGGGCG 0.812663 -58 GGGCCTCGCCTCCCCTGAAGAGTTTG 29 171 0 CGCCTCCCCT 0.789936 -16 AAGCGCATTGCGCGGCGCCTGCTGGCAGTC 30 80 0 CGCGGCGCCT 0.643095 -113 TCGAGGCGAACAGCGGCCGTGGCCAACATA 30 134 1 CAGCGGCCGT 0.803118 -59 TCACGGCATGCACCAGGGCAACCCGTATCG 31 58 1 CACCAGGGCA 0.659945 -139 GAGCGGTGAACCGCGCCGCTACCGAAACAC 31 120 1 CCGCGCCGCT 0.985047 -77 GTGCCGGGCTCCGCGGCGCAA 32 2 0 CCGCGGCGCA 0.978933 -299 CCGCGGAGCCCGGCACCGCCAGCAGTGCCT 32 16 1 CGGCACCGCC 0.974077 -285 ATCAGGGCATCCGCGAGGCACTGCTGGCGG 32 31 0 CCGCGAGGCA 0.839269 -270 ACGTCCAGGTCGGCGACCGCAATACCGACG 32 123 1 CGGCGACCGC 0.763585 -178 ATCTGCTTCTCCGGGTCGGTCAGATCGGCT 32 245 1 CCGGGTCGGT 0.485071 -56 GATCGGCTTTCGGGTGCGCTGAGGAGGTAG 32 267 1 CGGGTGCGCT 0.789581 -34 TCCACCCGCCATCCCACGATCCAGCG 34 7 1 CGCCATCCCA 0.484172 -98 GATCCAGCGGCCCCGGGGCGATCGGGTCCT 34 28 1 CCCCGGGGCG 0.612561 -77 CGCCGCGGCATCCCTGGCGA 35 1 1 CGCCGCGGCA 0.864497 -82 TGATCATTGTCGCCAGGCGCAATTGGAGAA 35 49 0 CGCCAGGCGC 0.702454 -34 TACCAGACAGCCGGGCCCCGGGCCACCCAT 36 15 0 CCGGGCCCCG 0.518271 -85 AGCTGTTTTGCGGCCGCGCTTACCAGACAG 36 35 0 CGGCCGCGCT 0.900084 -65 TCAGGAGGTTCGGCGGGGCGTTACCTTTGC 37 15 0 CGGCGGGGCG 0.582255 -85 CCGCGGCACACCGCGACGCTATCGGCAGCT 38 47 0 CCGCGACGCT 0.953734 -178 ACCGCGCGGACGCCGCGGCACACCGCGACG 38 59 0 CGCCGCGGCA 0.864497 -166 GCGGCGTCCGCGCGGTCGCTCGTGCCCGAC 38 73 1 CGCGGTCGCT 0.668718 -152 CAGGTCCCGTCGGGAGGCCGAGGATCAGGG 38 163 0 CGGGAGGCCG 0.57768 -62 GACCTGAGCGCGGCGAGGCGGCGACCCATT 38 187 1 CGGCGAGGCG 0.538487 -38 CGGGCGGTACCCCCACCGCATCGCTGCGCT 39 26 0 CCCCACCGCA 0.914077 -42 CCGCTCTCCCCCGCAAGCGGGCGGTACCCC 39 43 0 CCGCAAGCGG 0.507097 -25 CGGCGCCGCTCTCCCCCGCA 39 58 0 CGGCGCCGCT 0.980011 -10 TAGTTTTGCACCCCGCCACGACATCGCGGG 41 16 1 CCCCGCCACG 0.933341 -46 GGCTCCTTAACAGGGGGGCTGGTAGCGCAG 42 14 1 CAGGGGGGCT 0.77368 -85 TCGAACCACGCACCTGCGCTACCAGCCCCC 42 27 0 CACCTGCGCT 0.70353 -72 TCCACAGTGCCCCCGGCACGACTCGAACGT 43 188 0 CCCCGGCACG 0.956374 -113 CTGCCACGACCGCCACCCCGCACCTGCGTA 44 22 1 CGCCACCCCG 0.543155 -31 TCTGCATCGTCGCCGGCGCGGGTCAATCGA 45 21 0 CGCCGGCGCG 0.646281 -153 CGCCGCTCCTCCCCATCGCTTTGCTCTGCA 45 45 0 CCCCATCGCT 0.786104 -129 TGGGGAGGAGCGGCGCCAGTGACCCGCGCC 45 60 1 CGGCGCCAGT 0.84269 -114 TCTGCATCGTCGCCGGCGCGGGTCACTGGC 45 74 0 CGCCGGCGCG 0.646281 -100 CGCCGCTCCTCCCCATCGCTTTGCTCTGCA 45 98 0 CCCCATCGCT 0.786104 -76 TGGGGAGGAGCGGCGCCAGTGACCCGCGCC 45 113 1 CGGCGCCAGT 0.84269 -61 TCTGCATCGTCGCCGGCGCGGGTCACTGGC 45 127 0 CGCCGGCGCG 0.646281 -47 CGCCGCTCCTCCCCATCGCTTTGCTCTGCA 45 151 0 CCCCATCGCT 0.786104 -23 CGATCGCGTACGGCGCACCGGACACAGCCG 46 23 0 CGGCGCACCG 0.77321 -112 CGTACGCGATCGGCAACCCGCGGTGGCCAG 46 41 1 CGGCAACCCG 0.759306 -94 CGACGTAAATCGGCTGGCCACCGCGGGTTG 46 54 0 CGGCTGGCCA 0.663853 -81 GGGAACGCTACCGCCACGCTCGGATAGGCC 46 101 1 CCGCCACGCT 0.619712 -34 TCGCCGCCGCCCGTTTTGTGG 48 2 1 CGCCGCCGCC 0.961867 -282 GTGATTTTCCCGGCAGCGGAATCCACAGCG 48 42 0 CGGCAGCGGA 0.885254 -242 GAGTAGTTTACACCGACCCAGCTGGTGATT 48 66 0 CACCGACCCA 0.434746 -218 GTAAACTACTCGGCGCAGCTCGCATCGGCG 48 85 1 CGGCGCAGCT 0.837446 -199 CACGCGAAGTCAGCCCGCCGATGCGAGCTG 48 100 0 CAGCCCGCCG 0.445462 -184 CGTGTCTGCACCGCGGCCCGCCTTTCCGGG 48 126 1 CCGCGGCCCG 0.810724 -158 CAACAGCATGCCGGGGCGGTCCCGCGGCGG 48 161 1 CCGGGGCGGT 0.877287 -123 CGGGGCGGTCCCGCGGCGGTTCCCTTCGGG 48 172 1 CCGCGGCGGT 0.968905 -112 CTCCCGGGTCCGGCATCGCGGCAGACGCCA 48 208 1 CGGCATCGCG 0.701626 -76 TCGCGGCAGACGCCAGGGCCCGGCTTCAGC 48 223 1 CGCCAGGGCC 0.940169 -61 GTTGTTCGCCCGGCATCGGCTGAAGCCGGG 48 241 0 CGGCATCGGC 0.66582 -43 CACGGCGTTTCGGCAGCCGGCGTCGGCCGT 49 39 1 CGGCAGCCGG 0.847293 -46 TAATGGGTGGCCGGACGGCCGACGCCGGCT 49 53 0 CCGGACGGCC 0.808447 -32 CCCGCCGGACAGCACGCGTTCGACGGTAG 51 10 1 CAGCACGCGT 0.45499 -205 TCGGGGTCGACGGCTGGCCGAGTGCTACCG 51 34 0 CGGCTGGCCG 0.60915 -181 CAACGCTTTCCGCCCGCGCGAATCGGGGTC 51 56 0 CGCCCGCGCG 0.590328 -159 CAGACTCCGCCGGCGGGCCGTTGCAGACCA 51 84 0 CGGCGGGCCG 0.549928 -131 ATCAGGCTGGCGGCAGGCCTGGTCCTACAA 51 128 0 CGGCAGGCCT 0.930973 -87 AACATCCAGCCCGGACCGGGCCAAAACCCA 51 183 0 CCGGACCGGG 0.633423 -32 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 54 13 1 CGGCGGCCCG 0.672002 -179 GTCCGCCGGACCGCACCGGAAGCAGAAGGC 54 132 0 CCGCACCGGA 0.846379 -60 CGGGGGTCAACGCCGACGGAGATGGCG 55 8 0 CGCCGACGGA 0.678573 -34 TCGCCCGCGGCGGCACCGCGTC 56 3 0 CGGCACCGCG 0.647404 -234 CGCGGTGCCGCCGCGGGCGATACGCTCCGA 56 13 1 CCGCGGGCGA 0.789765 -224 CCAAGTCTGTCGCCGCCGCGGCCAGCATCT 56 89 0 CGCCGCCGCG 0.513898 -148 CAGACTTGGGCGGCATCAGGTCAGGGATCA 56 110 1 CGGCATCAGG 0.445632 -127 GGTCAGGGATCAGCGCCGCCTATGCGCGTC 56 128 1 CAGCGCCGCC 0.954123 -109 AGTTCTCTGGCAGCACCCGGTGTCGATAAA 56 193 0 CAGCACCCGG 0.757833 -44 ACTCGAGACGCGGCACAGGTCGGCACC 56 220 1 CGGCACAGGT 0.423341 -17 CAAGCTCACACCCGACGGGCAGAAAGAGGT 57 38 1 CCCGACGGGC 0.446562 -36 GGTTGCCACGGCCGCCACCTCTTTCT 57 58 0 CACGGCCGCC 0.743009 -16 GGTAGCGAACCCGCAGGAGTGCA 58 42 1 CCGCAGGAGT 0.582723 -13 TGAGTGGTACCCCCACCGCATCGTCGTCGA 59 22 0 CCCCACCGCA 0.914077 -43 GCATATTCTTCCGCGCGTCGTCATAGCCTA 60 29 0 CCGCGCGTCG 0.478743 -272 CTCGATCCTGCACCTGGGCCGGGCTGTGCG 60 138 1 CACCTGGGCC 0.541423 -163 GACGCCTTGCCCGCACAGCCCGGCCCAGGT 60 149 0 CCGCACAGCC 0.651446 -152 GGCGTCCATCCAGCGCCAGCAACGTCGCAT 60 173 1 CAGCGCCAGC 0.53807 -128 GCCCTTCGCTCACCGGGGCATTAGATGCGA 60 197 0 CACCGGGGCA 0.809526 -104 ATCGAGGTCGCAGCTGGCCGAGCAAGCGCT 60 262 1 CAGCTGGCCG 0.67364 -39 ********** Masking position 1 Map Score: 179.257 Number of sites scoring better than the average of aligned sites = 103863 Number in coding regions = 97343 Number in noncoding regions = 6520 Number of orfs with sites within 600 bp upstream = 1603 Fraction of orfs with sites within 600 bp upstream = 0.257469 Motif number 2 GATCGTCGGATAGCGCTGGCCAACTCTGGG 1 11 0 TAGCGCTGGC 0.38474 -91 GCGATCACCGCCGCTGTGCGGCGAGGAGAT 1 74 1 CCGCTGTGCG 0.793031 -28 CACTACGCTTCGGGGCCGCCGGTTAGGTCT 2 14 0 CGGGGCCGCC 0.947761 -75 CTTAGGTAGCATGGCATGCC 2 79 1 ATGGCATGCC 0.307476 -10 ACCGCTGCACCTGCGGCGACGAATTG 5 7 0 CTGCGGCGAC 0.881593 -294 CGCCAGCACAGTGGCATGGGACTTCGATGC 5 49 1 GTGGCATGGG 0.284727 -252 GCAGCCACGAGGGCTGTGGCTGTCGGGTTC 5 79 0 GGGCTGTGGC 0.775719 -222 CAACCGCCCACCGGCCTGGGGGTTTACCAG 5 244 0 CCGGCCTGGG 0.818611 -57 CGGTTGCCTGCTGGCGCGCGACGGTCGGTG 5 268 1 CTGGCGCGCG 0.781316 -33 CGGTCCAGTATGCGTCGGCGCAATTTCGC 6 10 1 ATGCGTCGGC 0.663632 -83 CGCCTCGGTACAGCGATGGCTTTGGCAGGC 6 37 1 CAGCGATGGC 0.766152 -56 CCTATGAGTAGGGGGCTGCG 7 34 1 GGGGGCTGCG 0.741784 -10 GGGTAGGGTGACGCCATGACCGCCGGCGAC 9 44 1 ACGCCATGAC 0.495796 -55 ATGCCGAGCGCAGCGATGAGGAGGAGCGGC 9 75 1 CAGCGATGAG 0.353881 -24 AGCGGGCCGTAGGGTGTGCCAG 10 24 1 AGGGTGTGCC 0.500104 -12 GTGTGGGGGTCGGGCGCGCCAATACACGTA 11 30 1 CGGGCGCGCC 0.935362 -112 CGCGAGGCTACCGGGCCGGGGCAGTATTGA 12 13 1 CCGGGCCGGG 0.938962 -23 ATTGGTGTTTCCGCCACGGCGTTGGCATGA 13 71 1 CCGCCACGGC 0.939614 -81 AATTTCGGCAACGGCCTGCGGACTTTTTGC 14 113 0 ACGGCCTGCG 0.642844 -162 ATGGGTGGACCAGCGTTGACACGCTGTGCC 14 153 1 CAGCGTTGAC 0.458973 -122 CAGCGTTGACACGCTGTGCCATGGTCGAGT 14 163 1 ACGCTGTGCC 0.76591 -112 CACACCAGTGAAGCTGCGCCGTTGACACCG 14 196 1 AAGCTGCGCC 0.699532 -79 ACCGGTACGCGCAAAGCTGGG 16 2 1 CCGGTACGCG 0.612362 -172 CACTAGGTCCGCGCGATGGGCGGAACACGA 16 152 1 GCGCGATGGG 0.788087 -22 CAATTTGGATCTGCCGTGCCCTCGTAATCT 18 33 1 CTGCCGTGCC 0.859142 -45 GCGCGGCCCGGCCATACGGTCC 19 3 1 GCGGCCCGGC 0.943472 -40 GCCCGGCCATACGGTCCGGCTGTGACACTC 19 16 1 ACGGTCCGGC 0.773134 -27 GTAGCGGCATACGGCGTGCGAACTCTGCTG 20 12 0 ACGGCGTGCG 0.684275 -50 ACTGTCAGCGCCGGCTGTCGAAATG 20 47 0 CAGCGCCGGC 0.94923 -15 CAAATTTCACGAGCGCTGACTACGCGCTGC 21 34 1 GAGCGCTGAC 0.694008 -161 TGACTACGCGCTGCTCCGGGGAAACGTATC 21 50 1 CTGCTCCGGG 0.676599 -145 CCGTATTCGTGGGCCCCGGCGCATAAAGTG 21 93 0 GGGCCCCGGC 0.943095 -102 GCAGCATCCCGTGCCGCGGCTGGCCGGACG 21 126 1 GTGCCGCGGC 0.913403 -69 ACGTGATCCGAGGGTGTGGGTCTCACCAGA 21 153 1 AGGGTGTGGG 0.318455 -42 TCAACGGTAGGTGCCGCGGGGCTTGAAG 22 9 0 GTGCCGCGGG 0.831265 -23 CAAGGTATCGCTGCGGCGCGCATCGTCGCC 24 29 0 CTGCGGCGCG 0.906679 -128 TGTTAGGGTGCCGGTACGGGACCTAGTCTT 24 86 1 CCGGTACGGG 0.612361 -71 GCTGACCTCCTGGGGCCGGCAAAGCACCCG 26 14 1 TGGGGCCGGC 0.578248 -184 CCGTTTCGCTACGGGACGCCGGGTGCTTTG 26 33 0 ACGGGACGCC 0.838771 -165 TCGAAGCGGCCCGGTCTGCGCCGTCCATTG 26 72 0 CCGGTCTGCG 0.638571 -126 GCAGACCGGGCCGCTTCGACTCAGGAAGCG 26 83 1 CCGCTTCGAC 0.612001 -115 GGTTGGTTGGTAGCGTCGCCGATCCCAAGG 26 148 1 TAGCGTCGCC 0.287995 -50 ACCACAGTCAGGGCCATGCGATTCCTCCCT 26 175 0 GGGCCATGCG 0.57563 -23 GTGTGCGGGTGAGCTCCGACCGCCCAGCCA 27 28 1 GAGCTCCGAC 0.570524 -58 GCGCGCCGAGCGGCCCATAA 28 1 1 GCGCGCCGAG 0.883667 -207 TTGAGCAACTCCGGCGCGCGGGTGTTATGG 28 25 0 CCGGCGCGCG 0.924658 -183 CGGGGATATAGCGCGTTGACTCTACTTACC 28 164 1 GCGCGTTGAC 0.673387 -44 CTATGGCTACGAGCTGTGCGAACATCCGCT 29 32 1 GAGCTGTGCG 0.480267 -155 GTGGCTCGCCCAGCGGTGCCCGCGGGGGCT 29 125 0 CAGCGGTGCC 0.908814 -62 AATCTAGATCGTGGCTCGCCCAGCGGTGCC 29 135 0 GTGGCTCGCC 0.582068 -52 GGGCCTCGCCTCCCCTGAAG 29 177 0 GGGCCTCGCC 0.82596 -10 CGCGCGTTGCCCGGTCTCTCT 30 2 1 GCGCGTTGCC 0.852076 -191 ATAAAGGCTAACGCTTTGCCAGCGATTCGC 30 33 0 ACGCTTTGCC 0.437595 -160 CAGTCGGTGAACGGTCTGCCCCATAAAGGC 30 55 0 ACGGTCTGCC 0.601383 -138 CAAGCGCATTGCGCGGCGCCTGCTGGCAGT 30 81 0 GCGCGGCGCC 0.982051 -112 AGGCGAACAGCGGCCGTGGCCAACATAAGT 30 137 1 CGGCCGTGGC 0.920254 -56 TTTGGCTTGCTAGCGGTGGCATTGGGTCAC 31 23 1 TAGCGGTGGC 0.429543 -174 GCCCTGGTGCATGCCGTGACGCCCGTGACC 31 47 0 ATGCCGTGAC 0.465433 -150 TGGTGACGATACGGGTTGCCCTGGTGCATG 31 64 0 ACGGGTTGCC 0.624924 -133 CCGCATTATTCCGCTTCGAGCGGTGAACCG 31 103 1 CCGCTTCGAG 0.424197 -94 TGTGTTTCGGTAGCGGCGCGGTTCACCGCT 31 121 0 TAGCGGCGCG 0.442714 -76 CATTAGCCTGAGGGGACGCCATTCGCAGGA 31 171 1 AGGGGACGCC 0.741262 -26 TGGCGGTGCCGGGCTCCGCGGCGCAA 32 7 0 GGGCTCCGCG 0.751885 -294 GAGGCACTGCTGGCGGTGCCGGGCTCCGCG 32 17 0 TGGCGGTGCC 0.568283 -284 ACCGCCAGCAGTGCCTCGCGGATGCCCTGA 32 30 1 GTGCCTCGCG 0.539501 -271 CGGCTTTCGGGTGCGCTGAGGAGGTAGTCA 32 270 1 GTGCGCTGAG 0.494641 -31 CCGCTGGATCGTGGGATGGCGGGTGGA 34 8 0 GTGGGATGGC 0.562709 -97 CACGATCCAGCGGCCCCGGGGCGATCGGGT 34 25 1 CGGCCCCGGG 0.909998 -80 CTCGCCAGGGATGCCGCGGCG 35 2 0 ATGCCGCGGC 0.846031 -81 TGGGTGGCCCGGGGCCCGGCTGTCTGGTAA 36 16 1 GGGGCCCGGC 0.901921 -84 CGCAAAGGTAACGCCCCGCCGAACCTCCTG 37 14 1 ACGCCCCGCC 0.94004 -86 GGGGTGTTCGCGGGTGCGACCCGTCAAGCC 37 64 1 CGGGTGCGAC 0.669753 -36 ACACCTTCTGAGGGCGCGACAGGTGGCCGG 38 17 0 AGGGCGCGAC 0.673846 -208 GACCGCGCGGACGCCGCGGCACACCGCGAC 38 60 0 ACGCCGCGGC 0.949694 -165 CTCCACGAGTCGGGCACGAGCGACCGCGCG 38 81 0 CGGGCACGAG 0.443007 -144 GCGGGTTTGAGGGCGCCGAGTCGCTCCACG 38 104 0 GGGCGCCGAG 0.807065 -121 GCAATCGAAAACGCCCTGACCCTGATCCTC 38 144 1 ACGCCCTGAC 0.712991 -81 CGGGACCTGAGCGCGGCGAGGCGGCGACCC 38 184 1 GCGCGGCGAG 0.901445 -41 GTACGGGAGAATGGGTCGCCGCCTCGCCGC 38 196 0 ATGGGTCGCC 0.522773 -29 GAGCGCAGCGATGCGGTGGGGGTACCGCCC 39 25 1 ATGCGGTGGG 0.63173 -43 TTGCGGGGGAGAGCGGCGCCG 39 57 1 GAGCGGCGCC 0.945162 -11 GTTTTGCACCCCGCCACGACATCGCGGGTA 41 18 1 CCGCCACGAC 0.847778 -44 TGAGCTACGGAGGCGATGCGCAGGTCAGTT 43 121 0 AGGCGATGCG 0.51618 -180 CACAGTGCCCCCGGCACGACTCGAACGTGC 43 186 0 CCGGCACGAC 0.755637 -115 GGTCAGCATGGTGGCGTGGCTTGACACCGC 43 225 1 GTGGCGTGGC 0.721657 -76 AGGCGACTCTGGGCGTCGACCCATAACGAG 43 255 0 GGGCGTCGAC 0.719468 -46 GAACTCAATGCTGCCACGACCGCCACCCCG 44 12 1 CTGCCACGAC 0.618473 -41 TTACGCAGGTGCGGGGTGGCGGTCGTGGCA 44 23 0 GCGGGGTGGC 0.93079 -30 TTCGATTGACCCGCGCCGGCGACGATGCAG 45 20 1 CCGCGCCGGC 0.98343 -154 ATGCAGAGCAAAGCGATGGGGAGGAGCGGC 45 44 1 AAGCGATGGG 0.378994 -130 CGATGGGGAGGAGCGGCGCCAGTGACCCGC 45 57 1 GAGCGGCGCC 0.945162 -117 CGCCAGTGACCCGCGCCGGCGACGATGCAG 45 73 1 CCGCGCCGGC 0.98343 -101 ATGCAGAGCAAAGCGATGGGGAGGAGCGGC 45 97 1 AAGCGATGGG 0.378994 -77 CGATGGGGAGGAGCGGCGCCAGTGACCCGC 45 110 1 GAGCGGCGCC 0.945162 -64 CGCCAGTGACCCGCGCCGGCGACGATGCAG 45 126 1 CCGCGCCGGC 0.98343 -48 ATGCAGAGCAAAGCGATGGGGAGGAGCGGC 45 150 1 AAGCGATGGG 0.378994 -24 CGATGGGGAGGAGCGGCGCCA 45 163 1 GAGCGGCGCC 0.945162 -11 TCGGCTGTGTCCGGTGCGCCGTACGCGATC 46 22 1 CCGGTGCGCC 0.911416 -113 GATCGGCAACCCGCGGTGGCCAGCCGATTT 46 48 1 CCGCGGTGGC 0.969362 -87 TCCACAAAACGGGCGGCGGCGA 48 3 0 GGGCGGCGGC 0.967877 -281 GCGGAATCCACAGCGACGACATTGTCCACA 48 27 0 CAGCGACGAC 0.725943 -257 CCGCCGATGCGAGCTGCGCCGAGTAGTTTA 48 86 0 GAGCTGCGCC 0.817154 -198 GCTCGCATCGGCGGGCTGACTTCGCGTGTC 48 102 1 GCGGGCTGAC 0.799905 -182 TGTCTGCACCGCGGCCCGCCTTTCCGGGAT 48 128 1 GCGGCCCGCC 0.9435 -156 CGCCGCGGGACCGCCCCGGCATGCTGTTGC 48 160 0 CCGCCCCGGC 0.975192 -124 CCGAAGGGAACCGCCGCGGGACCGCCCCGG 48 171 0 CCGCCGCGGG 0.956725 -113 CTGGCGTCTGCCGCGATGCCGGACCCGGGA 48 209 0 CCGCGATGCC 0.912285 -75 GGCTGAAGCCGGGCCCTGGCGTCTGCCGCG 48 224 0 GGGCCCTGGC 0.880052 -60 TTTCGGCAGCCGGCGTCGGCCGTCCGGCCA 49 46 1 CGGCGTCGGC 0.903469 -39 TGGGGCCCAACCGGTACGGCCCCA 50 5 0 CCGGTACGGC 0.771807 -33 CCGCGCGAATCGGGGTCGACGGCTGGCCGA 51 43 0 CGGGGTCGAC 0.650351 -172 TTGGTCTGCAACGGCCCGCCGGCGGAGTCT 51 83 1 ACGGCCCGCC 0.896959 -132 TTTGTAGGACCAGGCCTGCCGCCAGCCTGA 51 127 1 CAGGCCTGCC 0.75271 -88 GGGTTTTGGCCCGGTCCGGGCTGGATGTTT 51 184 1 CCGGTCCGGG 0.799626 -31 GGGTGGAGCAACGGGCCGCCGAGCTGGGCG 54 14 0 ACGGGCCGCC 0.929293 -178 TGCTTCCGGTGCGGTCCGGCGGACACTTAT 54 138 1 GCGGTCCGGC 0.867386 -54 CCATCTCCGTCGGCGTTGACCCCCGTGAGA 55 13 1 CGGCGTTGAC 0.597267 -29 AGCGTATCGCCCGCGGCGGCACCGCGTC 56 9 0 CCGCGGCGGC 0.986201 -228 CGCGGGCGATACGCTCCGACCGTCAACGAG 56 24 1 ACGCTCCGAC 0.687191 -213 GAGATGCTGGCCGCGGCGGCGACAGACTTG 56 88 1 CCGCGGCGGC 0.986201 -149 GGTCAGGGATCAGCGCCGCCTATGCGCGTC 56 128 1 CAGCGCCGCC 0.94923 -109 TGCGCGTCCTCTGCGGTGACCTGGCTGGTA 56 150 1 CTGCGGTGAC 0.767232 -87 AAAGAGGTGGCGGCCGTGGCAACC 57 60 1 CGGCCGTGGC 0.920254 -14 GTCGACGACGATGCGGTGGGGGTACCACTC 59 21 1 ATGCGGTGGG 0.63173 -44 GATCCTGCACCTGGGCCGGGCTGTGCGGGC 60 141 1 CTGGGCCGGG 0.817507 -160 CGCTGGATGGACGCCTTGCCCGCACAGCCC 60 158 0 ACGCCTTGCC 0.66527 -143 AATTCGGTACGAGGGATGCGCCCTTCGCTC 60 216 0 GAGGGATGCG 0.394109 -85 TGCGACCTCGATGGGGTGGGAATCCGGGAA 60 244 0 ATGGGGTGGG 0.487823 -57 CTTGCTCGGCCAGCTGCGACCTCGATGGGG 60 258 0 CAGCTGCGAC 0.676311 -43 ********** Masking position 3 Map Score: 175.077 Number of sites scoring better than the average of aligned sites = 90457 Number in coding regions = 84508 Number in noncoding regions = 5949 Number of orfs with sites within 600 bp upstream = 1586 Fraction of orfs with sites within 600 bp upstream = 0.254738 Motif number 3 CGCTTCGGGGCCGCCGGTTAGGTCTCGG 2 7 0 CCGCCGGTGG 0.786003 -82 GCCTACCGCTGCACCTGCGGCGACGAATTG 5 9 0 GCACCTGCCG 0.298964 -292 GGCGTCACCGGCGCCAGCACAGTGGCATGGGA 5 38 1 GCGCCAGCAG 0.849595 -263 CGATGCGAACCCGACAGCCACAGCCCTCGTGG 5 73 1 CCGACAGCCA 0.609748 -228 TTCTGGATTACCGACAGCTGACCACCTGGGAT 5 180 0 CCGACAGCAC 0.642677 -121 CAGCAGGCAACCGCCCACCGGCCTGGGGGTTT 5 249 0 CCGCCCACGC 0.383954 -52 AGCGCGACCACCGACCGTCGCGCGCCAGCAGG 5 274 0 CCGACCGTCG 0.946131 -27 GACGCCATGACCGCCGGCGACGATGCCGAGCG 9 53 1 CCGCCGGCCG 0.983367 -46 GGCGACGATGCCGAGCGCAGCGATGAGGAGGA 9 68 1 CCGAGCGCCG 0.967258 -31 GCACACCCTACGGCCCGCTAGGCTATCGACCA 10 11 0 CGGCCCGCGG 0.853881 -25 GTGTATTGGCGCGCCCGACCCCCACACGATAC 11 25 0 GCGCCCGACC 0.792334 -117 CTGCCCCGGCCCGGTAGCCTCGCGGC 12 5 0 CCGGTAGCCG 0.552047 -31 CCAACCGAGCGTACCGGGTGTTGTGA 13 5 1 CCGAGCGTCG 0.882949 -147 CAGAAGCTACCCGCCAGTAACGACAAATCCGC 14 46 0 CCGCCAGTCG 0.958602 -229 CTCCTCAAATGCGCGAGCAGACGCAAAAGCGC 15 55 0 GCGCGAGCAC 0.5501 -27 GGTAGCGTCTACGCTAGCTAACGCAACGAGAC 16 65 1 ACGCTAGCAC 0.121521 -109 GTCACTAGGTCCGCGCGATGGGCGGAACACGA 16 150 1 CCGCGCGAGG 0.589424 -24 AGCAAATTTCACGAGCGCTGACTACGCGCTGC 21 32 1 ACGAGCGCAC 0.189602 -163 GGATCACGTCCGGCCAGCCGCGGCACGGGATG 21 130 0 CGGCCAGCCG 0.899523 -65 GGTATCGCTGCGGCGCGCATCGTCGCCCGGAT 24 24 0 CGGCGCGCCG 0.906766 -133 CGGGTGAGCTCCGACCGCCCAGCCAGACGAGA 27 33 1 CCGACCGCAG 0.903141 -53 ACGAGATCCACCGCCCGCTCCGGAACCCCTGG 27 59 1 CCGCCCGCCG 0.978394 -27 GTGTTATGGGCCGCTCGGCGCGC 28 2 0 CCGCTCGGCG 0.540499 -206 CCCATAACACCCGCGCGCCGGAGTTGCTCAAC 28 24 1 CCGCGCGCGA 0.605577 -184 ACCTTAGCCCCCGCGGGCACCGCTGGGCGAGC 29 120 1 CCGCGGGCCG 0.962139 -67 GGGCACCGCTGGGCGAGCCACGATCTAGATTG 29 134 1 GGGCGAGCCG 0.638145 -53 GCATTGCGCGGCGCCTGCTGGCAGTCGGTGAA 30 74 0 GCGCCTGCGC 0.725771 -119 GAGGCGAACAGCGGCCGTGGCCAACATAAGTT 30 136 1 GCGGCCGTCC 0.484512 -57 CCCAATGCCACCGCTAGCAAGCCAAACGAGGT 31 17 0 CCGCTAGCGC 0.698366 -180 GCATGCCGTGACGCCCGTGACCCAATGCCACC 31 37 0 ACGCCCGTCC 0.778151 -160 GCGCGGTTCACCGCTCGAAGCGGAATAATGCG 31 104 0 CCGCTCGACG 0.763168 -93 GAGCCCGGCACCGCCAGCAGTGCCTCGCGGAT 32 21 1 CCGCCAGCTG 0.798762 -280 GATCAAGTCCACGCCCGTCACATGCTGGCTAC 32 177 0 ACGCCCGTCA 0.285486 -124 CTGCTAGGACCCGATCGCCCCGGGGCCGCTGG 34 31 0 CCGATCGCCG 0.921937 -74 GTCCTAGCAGACGCCTGTCACGCTAGCCAAAG 34 53 1 ACGCCTGTCG 0.563554 -52 CGGGTCGCACCCGCGAACACCCCTCTGTGATA 37 55 0 CCGCGAACCC 0.288702 -45 CCCACTCCGGCCACCTGTCGCGCCCTCAGAAG 38 11 1 CCACCTGTCG 0.186491 -214 GGTGTAGCTGCCGATAGCGTCGCGGTGTGCCG 38 42 1 CCGATAGCCG 0.840821 -183 TCGGGCACGAGCGACCGCGCGGACGCCGCGGC 38 70 0 GCGACCGCGG 0.717755 -155 CCGACGGGACCTGAGCGCGGCGAGGCGGCGAC 38 180 1 CTGAGCGCCG 0.265574 -45 GGGCGGTACCCCCACCGCATCGCTGCGCTCTG 39 23 0 CCCACCGCCG 0.693579 -45 GGTGGGGGTACCGCCCGCTTGCGGGGGAGAGC 39 39 1 CCGCCCGCGC 0.967345 -29 TCACGCTAGCGCAGGCAATAATCG 40 3 1 ACGCTAGCAG 0.216011 -27 GGTATCCGCGCCGATAGTCTCGTACCCC 41 44 1 CCGATAGTCG 0.564719 -18 TAGACCTTTCGCGCGTGTGGCGTCTGGAAAAA 43 65 1 GCGCGTGTCG 0.688161 -236 CAATGCTGCCACGACCGCCACCCCGCACCTGC 44 17 1 ACGACCGCCC 0.805386 -36 CGATTGACCCGCGCCGGCGACGATGCAGAGCA 45 22 1 GCGCCGGCCG 0.964301 -152 GGGAGGAGCGGCGCCAGTGACCCGCGCCGGCG 45 62 1 GCGCCAGTCC 0.841562 -112 CCAGTGACCCGCGCCGGCGACGATGCAGAGCA 45 75 1 GCGCCGGCCG 0.964301 -99 GGGAGGAGCGGCGCCAGTGACCCGCGCCGGCG 45 115 1 GCGCCAGTCC 0.841562 -59 CCAGTGACCCGCGCCGGCGACGATGCAGAGCA 45 128 1 GCGCCGGCCG 0.964301 -46 CCGCGGGTTGCCGATCGCGTACGGCGCACCGG 46 32 0 CCGATCGCAC 0.47644 -103 GTAGGCCTATCCGAGCGTGGCGGTAGCGTTCC 46 102 0 CCGAGCGTCG 0.882605 -33 TCGCCGCCGCCCGTTTTGTGGACAATGT 48 7 1 CCGCCCGTTG 0.718452 -277 CTACTCGGCGCAGCTCGCATCGGCGGGCTGAC 48 90 1 CAGCTCGCCG 0.370183 -194 GAACCGCCGCGGGACCGCCCCGGCATGCTGTT 48 162 0 GGGACCGCCG 0.749974 -122 CCGGGCCCTGGCGTCTGCCGCGATGCCGGACC 48 214 0 GCGTCTGCCG 0.261777 -70 CGGACGGCCGACGCCGGCTGCCGAAACGCCGT 49 40 0 ACGCCGGCCC 0.773815 -45 CGACGGCTGGCCGAGTGCTACCGTCGAACGCG 51 25 0 CCGAGTGCCC 0.740994 -190 CGCTTTCCGCCCGCGCGAATCGGGGTCGACGG 51 51 0 CCGCGCGACG 0.877498 -164 CTGCAACGGCCCGCCGGCGGAGTCTGGCATTT 51 88 1 CCGCCGGCAG 0.885747 -127 ACCAGGCCTGCCGCCAGCCTGATCGAGGGCTA 51 135 1 CCGCCAGCGA 0.576986 -80 ACACCCCTTAGCGCGTGTACCGTCAAAGCACA 52 38 1 GCGCGTGTCG 0.688164 -55 CACTGCCGTTGCGATAGTCTCCGGCC 53 5 0 GCGATAGTCC 0.229344 -26 AAGTGTCCGCCGGACCGCACCGGAAGCAGAAG 54 134 0 CGGACCGCCG 0.867976 -58 TCGGAGCGTATCGCCCGCGGCGGCACCGCGTC 56 11 0 TCGCCCGCCG 0.817572 -226 GCGATACGCTCCGACCGTCAACGAGGAGGACG 56 29 1 CCGACCGTAC 0.536243 -208 TTTATCGACACCGGGTGCTGCCAGAGAACTCG 56 193 1 CCGGGTGCCC 0.400206 -44 GAGTGGTACCCCCACCGCATCGTCGTCGACAC 59 19 0 CCCACCGCCG 0.693579 -46 GCATATTCTTCCGCGCGTCGTCATAGCCTAAT 60 27 0 CCGCGCGTTC 0.355819 -274 TATGCGCAATCCGCCAGAATGCCCAGAACGCT 60 54 1 CCGCCAGAGC 0.447108 -247 CGTCCATCCAGCGCCAGCAACGTCGCATCTAA 60 175 1 GCGCCAGCCG 0.977313 -126 TATCAACCAAGCGCTTGCTCGGCCAGCTGCGA 60 269 0 GCGCTTGCGG 0.502185 -32 ******** ** Masking position 7 Map Score: 91.5393 Number of sites scoring better than the average of aligned sites = 42031 Number in coding regions = 39477 Number in noncoding regions = 2554 Number of orfs with sites within 600 bp upstream = 1160 Fraction of orfs with sites within 600 bp upstream = 0.186315 Motif number 4 GGTTGCGCTGCTGATCGTCGGATAGCGCTG 1 23 0 CTGATCGTCG 0.275192 -79 GACGTACGCGATCACCGCCGCTGTGCGGCG 1 67 1 ATCACCGCCG 0.667743 -35 CGTTTCGGATCTCCTCGCCGCACAGCGGCG 1 82 0 CTCCTCGCCG 0.936006 -20 CAATTCGTCGCCGCAGGTGCAGC 5 4 1 TTCGTCGCCG 0.127195 -297 CAGCAGGCAACCGCCCACCGGCCTGGGGGT 5 251 0 CCGCCCACCG 0.740227 -50 CGGTCCAGTATGCGTCGGCGCAATTTC 6 8 1 GTATGCGTCG 0.0476404 -85 GGGTGACGCCATGACCGCCGGCGACGATGC 9 49 1 ATGACCGCCG 0.478684 -50 CATCGCTGCGCTCGGCATCGTCGCCGGCGG 9 63 0 CTCGGCATCG 0.843785 -36 TGCGCCGCTCCTCCTCATCGCTGCGCTCGG 9 78 0 CTCCTCATCG 0.670272 -21 ACACCAGTGAAGCTGCGCCGTTGACACCGC 14 197 1 AGCTGCGCCG 0.603343 -78 CCTCGTGTTCCGCCCATCGCGCGGACCTA 16 155 0 CCGCCCATCG 0.549977 -19 ACTGTCAGCGCCGGCTGTCGAAA 20 49 0 GTCAGCGCCG 0.713052 -13 TGCCTAATCCTCCGCACCAGCAGCAAATT 21 10 1 CTCCGCACCA 0.247751 -185 CCGGGCGACGATGCGCGCCGCAGCGATACC 24 26 1 ATGCGCGCCG 0.902842 -131 AAGCGGCCCGGTCTGCGCCGTCCATTGGAG 26 69 0 GTCTGCGCCG 0.865239 -129 TCAGGAAGCGATCTCCGTCGCGAAACAGGG 26 103 1 ATCTCCGTCG 0.690083 -95 CTCCCTTGGGATCGGCGACGCTACCAACCA 26 151 0 ATCGGCGACG 0.180349 -47 CCCATAACACCCGCGCGCCGGAGTTGCTCA 28 24 1 CCGCGCGCCG 0.901337 -184 CGTCACCAATGTCCACGCCGCATTATTCCG 31 86 1 GTCCACGCCG 0.459861 -111 TCGAGCGGTGAACCGCGCCGCTACCGAAAC 31 118 1 AACCGCGCCG 0.655018 -79 CGGTGCCGGGCTCCGCGGCGCAA 32 4 0 CTCCGCGGCG 0.859601 -297 CGCCGCGGAGCCCGGCACCGCCAGCAGTGC 32 14 1 CCCGGCACCG 0.803137 -287 CGCGGATGCCCTGATCGTCGTTGATTTCCT 32 46 1 CTGATCGTCG 0.275192 -255 GAATCTGCTTCTCCGGGTCGGTCAGATCGG 32 243 1 CTCCGGGTCG 0.388493 -58 TTATGACTACCTCCTCAGCGCACCCGAAAG 32 273 0 CTCCTCAGCG 0.294788 -28 GCAAAGGTAACGCCCCGCCGAACCTCCTGA 37 15 1 CGCCCCGCCG 0.91664 -85 CGTGGAGCGACTCGGCGCCCTCAAACCCGC 38 104 1 CTCGGCGCCC 0.42268 -121 AATGGGTCGCCGCCTCGCCGCGCTCAGGTC 38 187 0 CGCCTCGCCG 0.759824 -38 CATCGCTGCGCTCTGCATCGTCGCGGA 39 8 0 CTCTGCATCG 0.791863 -60 GCGGTACCCCCACCGCATCGCTGCGCTCTG 39 23 0 CACCGCATCG 0.508373 -45 CGGCGCCGCTCTCCCCCGCAAGCGGGCG 39 50 0 CTCTCCCCCG 0.364835 -18 CATCGCGGGTATCCGCGCCGATAGTCTCGT 41 37 1 ATCCGCGCCG 0.953249 -25 TTATCTAACGGTGGCCGTCGAGGAATTTTT 43 92 0 GTGGCCGTCG 0.570377 -209 ATAAACTGACCTGCGCATCGCCTCCGTAGC 43 118 1 CTGCGCATCG 0.834306 -183 GAAGGCGACTCTGGGCGTCGACCCATAACG 43 257 0 CTGGGCGTCG 0.883819 -44 TCTTCGATTGACCCGCGCCGGCGACGATGC 45 18 1 ACCCGCGCCG 0.868512 -156 CATCGCTTTGCTCTGCATCGTCGCCGGCGC 45 32 0 CTCTGCATCG 0.791863 -142 GGCGCCGCTCCTCCCCATCGCTTTGCTCTG 45 47 0 CTCCCCATCG 0.892023 -127 GGCGCCAGTGACCCGCGCCGGCGACGATGC 45 71 1 ACCCGCGCCG 0.868512 -103 CATCGCTTTGCTCTGCATCGTCGCCGGCGC 45 85 0 CTCTGCATCG 0.791863 -89 GGCGCCGCTCCTCCCCATCGCTTTGCTCTG 45 100 0 CTCCCCATCG 0.892023 -74 GGCGCCAGTGACCCGCGCCGGCGACGATGC 45 124 1 ACCCGCGCCG 0.868512 -50 CATCGCTTTGCTCTGCATCGTCGCCGGCGC 45 138 0 CTCTGCATCG 0.791863 -36 GGCGCCGCTCCTCCCCATCGCTTTGCTCTG 45 153 0 CTCCCCATCG 0.892023 -21 CGGCTGTGTCCGGTGCGCCGTACGCGATCG 46 23 1 CGGTGCGCCG 0.466066 -112 CGTAAATCGGCTGGCCACCGCGGGTTGCCG 46 51 0 CTGGCCACCG 0.810619 -84 CTAGACGAGAATGTTCGCCGACGTAAATCG 46 72 0 ATGTTCGCCG 0.368687 -63 GTGTAAACTACTCGGCGCAGCTCGCATCGG 48 83 1 CTCGGCGCAG 0.326834 -201 CACGCGAAGTCAGCCCGCCGATGCGAGCTG 48 100 0 CAGCCCGCCG 0.716294 -184 GACTTCGCGTGTCTGCACCGCGGCCCGCCT 48 119 1 GTCTGCACCG 0.675495 -165 CGGTTGTTCGCCCGGCATCGGCTGAAGCCG 48 243 0 CCCGGCATCG 0.636218 -41 CGAACGCGTGCTGTCCGGCGGG 51 3 0 CTGTCCGGCG 0.450012 -212 TGGTCTGCAACGGCCCGCCGGCGGAGTCTG 51 84 1 CGGCCCGCCG 0.759869 -131 GGTGGAGCAACGGGCCGCCGAGCTGGGCGG 54 13 0 CGGGCCGCCG 0.739235 -179 CCAGGTATAAGTGTCCGCCGGACCGCACCG 54 144 0 GTGTCCGCCG 0.685718 -48 GACAAGTCCCCACCGTCGTTTTGCG 54 177 0 GTCCCCACCG 0.818826 -15 CGCCATCTCCGTCGGCGTTGACCC 55 5 1 ATCTCCGTCG 0.690083 -37 GCCCAAGTCTGTCGCCGCCGCGGCCAGCAT 56 91 0 GTCGCCGCCG 0.871449 -146 CAGGTCAGGGATCAGCGCCGCCTATGCGCG 56 126 1 ATCAGCGCCG 0.72995 -111 GCACGTCTTTATCGACACCGGGTGCTGCCA 56 186 1 ATCGACACCG 0.12733 -51 CCACCTCTTTCTGCCCGTCGGGTGTGAGCT 57 40 0 CTGCCCGTCG 0.920857 -34 CCCCCACCGCATCGTCGTCGACACGGGGCA 59 13 0 ATCGTCGTCG 0.437487 -52 GCATATTCTTCCGCGCGTCGTCATAGCCTA 60 29 0 CCGCGCGTCG 0.834518 -272 ACGCTAGGCACTCTCCGCCGATACCCCAGA 60 81 1 CTCTCCGCCG 0.953145 -220 CCCGGATTCCCACCCCATCGAGGTCGCAGC 60 246 1 CACCCCATCG 0.43467 -55 ********** Masking position 9 Map Score: 93.4435 Number of sites scoring better than the average of aligned sites = 26242 Number in coding regions = 24681 Number in noncoding regions = 1561 Number of orfs with sites within 600 bp upstream = 871 Fraction of orfs with sites within 600 bp upstream = 0.139897 Motif number 5 CGTCGGATAGCGCTGGCCAACTCTGGG 1 8 0 CGCTGGCCAA 0.879557 -94 CCCTCGTGGCTGCAGGTCAGCAAGGTCCCA 5 96 1 TGCAGGTCAG 0.367285 -205 GAGGAATCCCAGGTGGTCAGCTGTCGGTAA 5 175 1 AGGTGGTCAG 0.811179 -126 ACCCCCAGGCCGGTGGGCGGTTGCCTGCTG 5 251 1 CGGTGGGCGG 0.951173 -50 GCGCGACGGTCGGTGGTCGCGCTAGCGT 5 283 1 CGGTGGTCGC 0.795088 -18 CCGGATCCGCAGGACGTCGATCCGTGG 14 8 1 CGCAGGACGT 0.365682 -267 GCAAAAAGTCCGCAGGCCGTTGCCGAAATT 14 113 1 CGCAGGCCGT 0.811907 -162 AGCGTGTCAACGCTGGTCCACCCATTTCAC 14 148 0 CGCTGGTCCA 0.561217 -127 TAGTCGAGGGAGCTGGCCAGGTGGTGCTGC 17 29 1 AGCTGGCCAG 0.923475 -21 CCCGTGCCGCGGCTGGCCGGACGTGATCCG 21 133 1 GGCTGGCCGG 0.983825 -62 CCAACCAACAGGTTGGCCGGGGGCCCTGTT 24 60 1 GGTTGGCCGG 0.728609 -97 TGCCGGCCCCAGGAGGTCAGCGCC 26 5 0 AGGAGGTCAG 0.58515 -193 GATCTCGTCTGGCTGGGCGGTCGGAGCTCA 27 37 0 GGCTGGGCGG 0.943749 -49 CGGATGACAACGCTGGCCGGGAACCCGGGC 29 78 0 CGCTGGCCGG 0.989075 -109 CCGCGGGCACCGCTGGGCGAGCCACGATCT 29 130 1 CGCTGGGCGA 0.886794 -57 CGATCTAGATTGCTGGTCAAACTCTTCAGG 29 154 1 TGCTGGTCAA 0.356756 -33 CAAAACGAATGGCTGGTCGAAGAG 30 179 1 GGCTGGTCGA 0.896983 -14 GATCATGCCAAGGTGGTCGTGATACCACTC 32 86 1 AGGTGGTCGT 0.708128 -215 ATCCCTGGCGAGGTGGTCGAAACCCTGGCT 35 20 1 AGGTGGTCGA 0.839762 -63 GGCGATGGGTGGCCCGGGGCCCGGCT 36 7 1 GGGTGGCCCG 0.824031 -93 AGGGCGCGACAGGTGGCCGGAGTGGG 38 7 0 AGGTGGCCGG 0.973411 -218 AGGTCCCGTCGGGAGGCCGAGGATCAGGGT 38 162 0 GGGAGGCCGA 0.830132 -63 TTCTCCCGTACGGTGGACGG 38 215 1 CGGTGGACGG 0.90414 -10 GTTTATCTAACGGTGGCCGTCGAGGAATTT 43 94 0 CGGTGGCCGT 0.911158 -207 GGAGGCGATGCGCAGGTCAGTTTATCTAAC 43 113 0 CGCAGGTCAG 0.777185 -188 CTGTGGAAATAGCAGGTCAGCATGGTGGCG 43 211 1 AGCAGGTCAG 0.643889 -90 CGGCAACCCGCGGTGGCCAGCCGATTTACG 46 51 1 CGGTGGCCAG 0.947809 -84 AAAGCCTAATGGGTGGCCGGACGGCCGACG 49 59 0 GGGTGGCCGG 0.979359 -26 CGGGGTCGACGGCTGGCCGAGTGCTACCGT 51 33 0 GGCTGGCCGA 0.950199 -182 CGGGCCGCCGAGCTGGGCGGAA 54 3 0 AGCTGGGCGG 0.928288 -189 ACCGTCAACGAGGAGGACGGCCATGTGGTT 56 42 1 AGGAGGACGG 0.616167 -195 AACCCGGAGATGCTGGCCGCGGCGGCGACA 56 82 1 TGCTGGCCGC 0.644623 -155 TCGAGGTCGCAGCTGGCCGAGCAAGCGCTT 60 263 1 AGCTGGCCGA 0.936392 -38 ********** Masking position 5 Map Score: 54.9109 Number of sites scoring better than the average of aligned sites = 9103 Number in coding regions = 8575 Number in noncoding regions = 528 Number of orfs with sites within 600 bp upstream = 455 Fraction of orfs with sites within 600 bp upstream = 0.0730806 Motif number 6 CCTGTGCTCCCTCTGGTTCTCGTGATGCCGG 3 13 0 CTCTGGTTCC 0.413071 -30 CTGGGATTCCTCGGGGATCCCCGACACGGAT 5 156 0 TCGGGGATCC 0.48529 -145 CAGGCCACCATCCCGATCCTCGTTCGACTAA 6 72 0 TCCCGATCCC 0.86979 -21 AGCGTGTCAACGCTGGTCCACCCATTTCACT 14 147 0 CGCTGGTCCC 0.831033 -128 CCTCGTGTTCCGCCCATCGCGCG 16 161 0 TCGTGTTCCC 0.655151 -13 ACTTTATGCGCCGGGGCCCACGAATACGGAC 21 94 1 CCGGGGCCCC 0.94347 -101 GACGGCAGCATCCCGTGCCGCGGCTGGCCGG 21 122 1 TCCCGTGCCC 0.579707 -73 GTCGATTTCCTGTTCCACAAATTCCACA 24 139 0 TCCTGTTCCC 0.842143 -18 GTTAGCACTGCCCTGTTTCGCGACGGAGATC 26 112 0 CCCTGTTTCC 0.829443 -86 CACCGCCCGCTCCGGAACCCCTGGCGCCG 27 67 1 TCCGGAACCC 0.681707 -19 CAGTAGTAGGCCCGGGTTCCCGGCCAGCGTT 29 69 1 CCCGGGTTCC 0.980005 -118 AGCGTTGTCATCCGGGTACACGATAAACCTT 29 94 1 TCCGGGTACC 0.727258 -93 GCAATCTAGATCGTGGCTCGCCCAGCGGTGC 29 136 0 TCGTGGCTCC 0.546919 -51 CGCGCGTTGCCCGGTCTCTCTGGCGAATCG 30 10 1 CCCGGTCTCC 0.807586 -183 GCTGGCGGTGCCGGGCTCCGCGGCGCAA 32 8 0 CCGGGCTCCC 0.789439 -293 CTCGCGGATGCCCTGATCGTCGTTGATTTCC 32 44 1 CCCTGATCGC 0.438005 -257 CTTGGCATGATCCTGGTCCACGAGGAAATCA 32 67 0 TCCTGGTCCC 0.95878 -234 ACCCGATCGCCCCGGGGCCGCTGGATCGTGG 34 24 0 CCCGGGGCCC 0.972749 -81 GACAGCCGGGCCCCGGGCCACCCATCGCC 36 9 0 CCCCGGGCCC 0.933536 -91 AACGCCCTGACCCTGATCCTCGGCCTCCCGA 38 153 1 CCCTGATCCC 0.944912 -72 CGTGTCTGCACCGCGGCCCGCCTTTCCGGGA 48 126 1 CCGCGGCCCC 0.867891 -158 GCCCGCCTTTCCGGGATCCGCAACAGCATGC 48 141 1 CCGGGATCCC 0.933849 -143 GGGATTTCCTCCCGGGTCCGGCATCGCGGCA 48 200 1 CCCGGGTCCG 0.85086 -84 CAGCCGTCGACCCCGATTCGCGCGGGCGGAA 51 48 1 CCCCGATTCC 0.858942 -167 GGCCAGCATCTCCGGGTTCACCAATGCAAAC 56 69 0 TCCGGGTTCC 0.954516 -168 TGCACTCCTGCGGGTTCGCTACCTAAGCA 58 36 0 TGCGGGTTCC 0.655161 -19 GTACCGAATTCCCGGATTCCCACCCCATCGA 60 236 1 CCCGGATTCC 0.939304 -65 ********* * Masking position 5 Map Score: 29.7186 Number of sites scoring better than the average of aligned sites = 4287 Number in coding regions = 3917 Number in noncoding regions = 370 Number of orfs with sites within 600 bp upstream = 269 Fraction of orfs with sites within 600 bp upstream = 0.0432059 Motif number 7 CTGGGCCATGGTTGCGCTGCTGATCGTCGGA 1 31 0 GTTGCGCGCT 0.875972 -71 TGCTTTTGCGTCTGCTCGGCAGA 15 3 0 TCTGCTCGCA 0.862588 -79 AAGCGCCACTTTTGCGCCGCAAAAGGGTGCT 15 30 0 TTTGCGCGCA 0.966915 -52 GCGCGCCGGAGTTGCTCAACATTGGCCGGTT 28 36 1 GTTGCTCACA 0.937775 -172 TCCCCATCGCTTTGCTCTGCATCGTCGCCGG 45 35 0 TTTGCTCGCA 0.97549 -139 TCCCCATCGCTTTGCTCTGCATCGTCGCCGG 45 88 0 TTTGCTCGCA 0.97549 -86 TCCCCATCGCTTTGCTCTGCATCGTCGCCGG 45 141 0 TTTGCTCGCA 0.97549 -33 TGGATACATCGTTGTGCCACAGTGTTGGCC 49 10 0 GTTGTGCACA 0.630297 -75 GGCGGAAAGCGTTGGTCTGCAACGGCCCGCC 51 72 1 GTTGGTCGCA 0.947476 -143 TCGGCGGCCCGTTGCTCCACCCCACATTCCA 54 22 1 GTTGCTCACC 0.839307 -170 ATACAGCGCAGTTGTTCAGCACATCTTCACC 54 75 1 GTTGTTCGCA 0.921024 -117 CGGCGACAGACTTGGGCGGCATCAGGTCAGG 56 104 1 CTTGGGCGCA 0.824142 -133 CAACCAAGCGCTTGCTCGGCCAGCTGCGACC 60 267 0 CTTGCTCGCC 0.902741 -34 ******* *** Masking position 3 Map Score: 11.5226 Number of sites scoring better than the average of aligned sites = 843 Number in coding regions = 783 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 8 TCGTATCACCCTCATCCGTGTCGGGGATCCCCGAG 5 143 1 CCACCGTTGG 0.970257 -158 GGGTTTACCAGATACCCGTATAGGGTATATATTTA 5 220 0 GTACCGTTGG 0.89159 -81 CGCAGCCCCCTACTCATAGGGCGACCATACAAT 7 21 0 CTATCATGGG 0.422982 -23 TAATGGAACACGTTCTCGTTTCGCGTTCGGCTTGG 9 11 1 CTTTCGTTGG 0.930655 -88 TTCAGCTGCCTTCCGTATCGTGTGGGGGTCGG 11 8 1 GCTCCGTTGG 0.952653 -134 CGCCAATACACGTAACCGTATCGAGGACTAACTTA 11 46 1 CTACCGTTGG 0.962811 -96 CTAGCGTAGACGCTACCGTTGACAGGCTGAAGAAT 16 47 0 CCTCCGTGCG 0.912209 -127 TTGGCCGGTTCGTTACCGTCTTGTGATCGAACGGG 28 57 1 CTTCCGTTGG 0.980495 -151 CCGACCTGGACGTTGCCATCGAGTGGTATCACGAC 32 101 0 CTTCCATGGG 0.842049 -200 TTTCCCTTCAGGTTACCGTTGTGTGATGACGACCG 32 208 0 GTTCCGTGGG 0.947833 -93 CGGATACCCGCGATGTCGTGGCGGGGTGCAAAACT 41 17 0 CATTCGTGGG 0.682407 -45 CGTCGGCGAACATTCTCGTCTAGGGAACGCTACCG 46 79 1 CTTTCGTTGG 0.930655 -56 TCGCCGCCGCCCGTTTTGTGGACAATGTCG 48 6 1 GCGCCGTTGG 0.791195 -278 GCGGCACTGCCGTTGCGATAGTCTCCGGC 53 12 0 CCTCCGTGGT 0.792076 -19 GAAACATGTTCTTAACCGTTTGGGCCTTCTGCTTC 54 109 1 CTACCGTTGC 0.669773 -83 GACAAGTCCCCACCGTCGTTTTGCGACCCCAGGTA 54 167 0 CCCTCGTTGG 0.761029 -25 AACCGCTCCTCTCCCGTTGCCAGTGAGTGGTAC 59 42 0 CCTCCGTGCG 0.912209 -23 * ** **** * * * Masking position 9 Map Score: 9.91406 Number of sites scoring better than the average of aligned sites = 1230 Number in coding regions = 1113 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 112 Fraction of orfs with sites within 600 bp upstream = 0.0179891 Motif number 9 TGTCGGTAATCCAGAACAGCTACTTAAATA 5 196 1 CCAGAACAGC 0.760405 -105 TAACCGCAGCCTGCCAAAGCCATCGCTGTA 6 45 0 CTGCCAAAGC 0.399183 -48 GTAGTATGGCCCTCAACGGCCGATCCCCCG 11 101 1 CCTCAACGGC 0.765348 -41 ATTGGTGTTTCCGCCACGGCGTTGGCATGA 13 71 1 CCGCCACGGC 0.96414 -81 TTGCGAATTTCGGCAACGGCCTGCGGACTT 14 118 0 CGGCAACGGC 0.692798 -157 TGCCGAGCAGACGCAAAAGCACCCTTTTGC 15 13 1 ACGCAAAAGC 0.569 -69 CACTTTTGCGCCGCAAAAGGGTGCTTTTGC 15 25 0 CCGCAAAAGG 0.870573 -57 GCGCGAGCAGACGCAAAAGCGCCACTTTTG 15 47 0 ACGCAAAAGC 0.569 -35 GCCTAATCCTCCGCACCAGCAGCAAATTTC 21 12 1 CCGCACCAGC 0.849374 -183 ATACGTTTCCCCGGAGCAGCGCGTAGTCAG 21 49 0 CCGGAGCAGC 0.796474 -146 GCATCGTCGCCCGGATAGGCTCGACCGCC 24 10 0 CCGGATAGGC 0.464374 -147 TCCACAAATTCCACAAAAGGGGGTTTGGAT 24 124 0 CCACAAAAGG 0.528694 -33 CCTCCTGGGGCCGGCAAAGCACCCGGCGTC 26 19 1 CCGGCAAAGC 0.863065 -179 GCCGAGCGGCCCATAACACCCGCGCGCCGG 28 15 1 CCATAACACC 0.187616 -193 ACGGTCTGCCCCATAAAGGCTAACGCTTTG 30 45 0 CCATAAAGGC 0.568803 -148 TCTGACCGACCCGGAGAAGCAGATTCTTTC 32 239 0 CCGGAGAAGC 0.720309 -62 TTGACTGATTCCAGAAAAGGGAGTCATA 34 87 1 CCAGAAAAGG 0.348299 -18 AACCGCAAAGGTAACGCCCCGC 37 3 1 CCGCAAAGGT 0.538519 -97 CGGGTGCGACCCGTCAAGCCTGACAAGGAG 37 74 1 CCGTCAAGCC 0.380202 -26 GTGGGCTCCTTAACAGGGGGGCTGGTA 42 8 1 CCTTAACAGG 0.123039 -91 TCGATCACCGTAACAGGACCGTTAGAC 47 30 0 CCGTAACAGG 0.696919 -17 ACGACATTGTCCACAAAACGGGCGGCGGCG 48 12 0 CCACAAAACG 0.147387 -272 GTTGCGGATCCCGGAAAGGCGGGCCGCGGT 48 135 0 CCGGAAAGGC 0.943664 -149 TTTCCGGGATCCGCAACAGCATGCCGGGGC 48 148 1 CCGCAACAGC 0.975576 -136 CGCCGCGGGACCGCCCCGGCATGCTGTTGC 48 160 0 CCGCCCCGGC 0.791478 -124 GACCGCAAAGCCTAATGGGTGG 49 73 0 CCGCAAAGCC 0.844184 -12 TGGGGCCCAACCGGTACGGCCCCA 50 5 0 CCGGTACGGC 0.588551 -33 AAGCGTTGGTCTGCAACGGCCCGCCGGCGG 51 78 1 CTGCAACGGC 0.728491 -137 AGCGCGTGTACCGTCAAAGCACAAAGTACA 52 47 1 CCGTCAAAGC 0.748505 -46 CCGGAGACTATCGCAACGGCAGTGCCGC 53 13 1 TCGCAACGGC 0.603426 -18 AAGTCTGTCGCCGCCGCGGCCAGCATCTCC 56 87 0 CCGCCGCGGC 0.846833 -150 ********** Masking position 1 Map Score: 20.9094 Number of sites scoring better than the average of aligned sites = 12906 Number in coding regions = 12071 Number in noncoding regions = 835 Number of orfs with sites within 600 bp upstream = 610 Fraction of orfs with sites within 600 bp upstream = 0.0979762 Motif number 10 CCCAGGTCTGGACGTACGCGATCACCGCCG 1 57 1 GACGTACGCG 0.83366 -45 TATAAGGTCAGTCGGATGCGCTCG 4 5 0 GTCGGATGCG 0.82606 -90 GCTGCGGTTAGTCGAACGAGGATCGGGATG 6 65 1 GTCGAACGAG 0.908437 -28 CACGAAACACCGGACGAGTATGAGGCCA 8 9 1 ACCGGACGAG 0.826058 -22 CCCTACCCAAGCCGAACGCGAAACGAGAAC 9 22 0 GCCGAACGCG 0.989626 -77 TCGTGTGGGGGTCGGGCGCGCCAATACACG 11 28 1 GTCGGGCGCG 0.919173 -114 GCCGCGGCTGGCCGGACGTGATCCGAGGGT 21 138 1 GCCGGACGTG 0.95636 -57 CGACCGCCCAGCCAGACGAGATCCACCGCC 27 44 1 GCCAGACGAG 0.934874 -42 CCGCTAGCAAGCCAAACGAGGTGCGTGT 31 9 0 GCCAAACGAG 0.859669 -188 TTTTCCAGACGCCACACGCGCGAAAGGTCT 43 66 0 GCCACACGCG 0.895353 -235 TGTCCGGTGCGCCGTACGCGATCGGCAACC 46 29 1 GCCGTACGCG 0.980811 -106 CTGCCGCGATGCCGGACCCGGGAGGAAATC 48 202 0 GCCGGACCCG 0.956184 -82 GAGTGCTACCGTCGAACGCGTGCTGTCCGG 51 15 0 GTCGAACGCG 0.968522 -200 ********** Masking position 3 Map Score: 15.4837 Number of sites scoring better than the average of aligned sites = 2399 Number in coding regions = 2220 Number in noncoding regions = 179 Number of orfs with sites within 600 bp upstream = 153 Fraction of orfs with sites within 600 bp upstream = 0.0245744 Motif number 11 CCCAGAGTTGGCCAGCGCTATC 1 3 1 CAGAGTTGGC 0.789156 -99 TGCTGATCGTCGGATAGCGCTGGCCAACTC 1 15 0 CGGATAGCGC 0.426699 -87 CGCACAGCGGCGGTGATCGCGTACGTCCAG 1 64 0 CGGTGATCGC 0.420056 -38 GCGCGACGGTCGGTGGTCGCGCTAGCGT 5 283 1 CGGTGGTCGC 0.798734 -18 CGCCTCGGTACAGCGATGGCTTTGGCAGGC 6 37 1 CAGCGATGGC 0.718162 -56 GTTTCCGCCACGGCGTTGGCATGATTCGCA 13 77 1 CGGCGTTGGC 0.945223 -75 GGTTTACCTGCGGATTTGTCGTTACTGGCG 14 37 1 CGGATTTGTC 0.529683 -238 ACCGTCGTCCAGGCGGTGTCAACGGCGCAG 14 209 0 AGGCGGTGTC 0.610676 -66 AAGACCGTTAAGGAGTTGTCT 14 264 1 AGGAGTTGTC 0.296023 -11 GCGTAGTAATCGGATGTCTCGTTGCGTTAG 16 82 0 CGGATGTCTC 0.659788 -92 CCATACGGTCCGGCTGTGACACTCTGTACT 19 22 1 CGGCTGTGAC 0.461798 -21 GCAGCAGAGTTCGCACGCCGTATG 20 5 1 CAGAGTTCGC 0.678292 -57 TGTTTCGCGACGGAGATCGCTTCCTGAGTC 26 100 0 CGGAGATCGC 0.816322 -98 CCAGGGGTTCCGGAGCGGGCGGTGGATCTC 27 61 0 CGGAGCGGGC 0.614591 -25 TGTGATCGAACGGGTGGGGCCTCTAGGTTT 28 78 1 CGGGTGGGGC 0.409002 -130 CTCTAGGTTTCGGAGGGCCCATTTTGCTTT 28 98 1 CGGAGGGCCC 0.751266 -110 GGTTCCCGGCCAGCGTTGTCATCCGGGTAC 29 83 1 CAGCGTTGTC 0.58793 -104 GTGGCTCGCCCAGCGGTGCCCGCGGGGGCT 29 125 0 CAGCGGTGCC 0.724993 -62 AGGCGAACAGCGGCCGTGGCCAACATAAGT 30 137 1 CGGCCGTGGC 0.697759 -56 GCTACACCTTCTGAGGGCGCGACAGGTGGC 38 20 0 CTGAGGGCGC 0.329029 -205 CGGTGTGCCGCGGCGTCCGCGCGGTCGCTC 38 64 1 CGGCGTCCGC 0.57847 -161 ACCCATAACGAGGCGGTGTCAAGCCACGCC 43 237 0 AGGCGGTGTC 0.610676 -64 ACTCAAACCACGGAGGTGCCCG 43 289 1 CGGAGGTGCC 0.890858 -12 GAGGTCCTCTCGGCTGTGTCCGGTGCGCCG 46 13 1 CGGCTGTGTC 0.807731 -122 GATCGGCAACCCGCGGTGGCCAGCCGATTT 46 48 1 CCGCGGTGGC 0.705603 -87 CCGCCACGCTCGGATAGGCCTACCCTTGGC 46 111 1 CGGATAGGCC 0.199669 -24 GGAAAATCACCAGCTGGGTCGGTGTAAACT 48 62 1 CAGCTGGGTC 0.422102 -222 CGTTGTGCCACAGTGTTGGCC 49 2 0 CAGTGTTGGC 0.378876 -83 TTTCGGCAGCCGGCGTCGGCCGTCCGGCCA 49 46 1 CGGCGTCGGC 0.708974 -39 GCTCACCTTCAGATGGGGCCCAACCGGTA 50 19 0 CAGATGGGGC 0.657074 -19 AACGGCCCGCCGGCGGAGTCTGGCATTTAC 51 92 1 CGGCGGAGTC 0.60063 -123 GGTTTACTGTAGGAGGTCTC 52 83 1 AGGAGGTCTC 0.419987 -10 TCAACGCCGACGGAGATGGCG 55 2 0 CGGAGATGGC 0.887508 -40 CCATCTCCGTCGGCGTTGACCCCCGTGAGA 55 13 1 CGGCGTTGAC 0.524035 -29 CAGGTCACCGCAGAGGACGCGCATAGGCGG 56 143 0 CAGAGGACGC 0.370371 -94 GACGGGCAGAAAGAGGTGGCGGCCGTGGCA 57 51 1 AAGAGGTGGC 0.521323 -23 GGCATTCTGGCGGATTGCGCATATTCTTCC 60 47 0 CGGATTGCGC 0.57156 -254 GCCGATACCCCAGATGTCTCCCGTGATCAG 60 97 1 CAGATGTCTC 0.339194 -204 CCCCGGTGAGCGAAGGGCGCATCCCTCGTA 60 209 1 CGAAGGGCGC 0.251661 -92 ********** Masking position 10 Map Score: 27.3983 Number of sites scoring better than the average of aligned sites = 26224 Number in coding regions = 24827 Number in noncoding regions = 1397 Number of orfs with sites within 600 bp upstream = 848 Fraction of orfs with sites within 600 bp upstream = 0.136203 Motif number 12 GTTGTGAAGACGCCATTCGCAGAGTTAGCA 13 30 1 CGCCATTCGC 0.972631 -122 GTGGCGGAAACACCAATCGCAGCACGCTTG 13 58 0 CACCAATCGC 0.90977 -94 ACGGCGTTGGCATGATTCGCACCGGGACTC 13 86 1 CATGATTCGC 0.268282 -66 CCTCGTGTTCCGCCCATCGCGCGGACCTAG 16 154 0 CGCCCATCGC 0.931303 -20 ATCGCTGCGGCGCGCATCGTCGCCCGGATA 24 23 0 CGCGCATCGT 0.494354 -134 GATCGTGGCTCGCCCAGCGGTGCCCGCGGG 29 129 0 CGCCCAGCGG 0.839112 -58 ACGCTTTGCCAGCGATTCGCCAGAGAGACC 30 23 0 AGCGATTCGC 0.795743 -170 GCAGGCGCCGCGCAATGCGCTTGCAGGACT 30 88 1 CGCAATGCGC 0.657404 -105 AACATAAGTTCACCATTCGGGCAAAACGAA 30 158 1 CACCATTCGG 0.865592 -35 CTCTTCGACCAGCCATTCGTTTTGCCCGAA 30 173 0 AGCCATTCGT 0.383632 -20 CCTGAGGGGACGCCATTCGCAGGAGAGAAG 31 177 1 CGCCATTCGC 0.972631 -20 TGATCATTGTCGCCAGGCGCAATTGGAGAA 35 49 0 CGCCAGGCGC 0.902 -34 GGCCCCGGGCCACCCATCGCC 36 2 0 CACCCATCGC 0.83961 -98 CGAGTCGCTCCACGAGTCGGGCACGAGCGA 38 88 0 CACGAGTCGG 0.577517 -137 TCAAACCCGCCACGATGCGCGCAATCGAAA 38 124 1 CACGATGCGC 0.883153 -101 TGCAGAGCGCAGCGATGCGGTGGGGGTACC 39 21 1 AGCGATGCGG 0.599805 -47 GAGCTACGGAGGCGATGCGCAGGTCAGTTT 43 120 0 GGCGATGCGC 0.589945 -181 TTTCCGCCCGCGCGAATCGGGGTCGACGGC 51 50 0 CGCGAATCGG 0.891693 -165 GCACAAAGTACACCAATCGGTTTACTGTAG 52 65 1 CACCAATCGG 0.825534 -28 ACGAGGGATGCGCCCTTCGCTCACCGGGGC 60 208 0 CGCCCTTCGC 0.948588 -93 CCAGACTATCAACCAAGCGCTTGCTCGGCC 60 277 0 AACCAAGCGC 0.574223 -24 ********** Masking position 8 Map Score: 22.4937 Number of sites scoring better than the average of aligned sites = 4333 Number in coding regions = 3978 Number in noncoding regions = 355 Number of orfs with sites within 600 bp upstream = 273 Fraction of orfs with sites within 600 bp upstream = 0.0438484 Motif number 13 ACGCGAAACGAGAACGTGTTCCATTA 9 5 0 AGAAGTGTTC 0.983066 -94 TGGCAAGACTAGAACGTGTTGCAATTTGGATC 18 12 1 AGAAGTGTTC 0.983415 -66 GCCCCGGCGCATAAAGTGTTTCTCCTTGTGGG 21 79 0 ATAAGTGTTC 0.885008 -116 CAACGATCCGAGCATGTGTTTCGGTAGCGGCG 31 133 0 AGCAGTGTTC 0.948071 -64 TCGCGCCCTCAGAAGGTGTAGCTGCCGATAGC 38 28 1 AGAAGTGTAC 0.924915 -197 CAAACGGTTAAGAACATGTTTCGCAGGTGAAG 54 99 0 AGAAATGTTC 0.884774 -93 CAAACTAGAACGTGTTACATTTCTTGAC 57 7 1 AGAAGTGTTC 0.983379 -67 **** ***** * Masking position 4 Map Score: 5.33913 Number of sites scoring better than the average of aligned sites = 15 Number in coding regions = 9 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 14 GCCGCACAGCGGCGGTGATCGCGTACGTCC 1 66 0 GGCGGTGATC 0.382503 -36 CGAACTACGAGGCTGGGACCTTGCTGACCT 5 109 0 GGCTGGGACC 0.928144 -192 CCTCATCCGTGTCGGGGATCCCCGAGGAAT 5 152 1 GTCGGGGATC 0.457216 -149 ATTTCCTCCTCGCGTGTACCTCAGGCTCAC 13 120 0 CGCGTGTACC 0.795092 -32 TGTCGTTACTGGCGGGTAGCTTCTGAAACG 14 53 1 GGCGGGTAGC 0.958244 -222 TTCCGCCCATCGCGCGGACCTAGTGACCCT 16 147 0 CGCGCGGACC 0.837911 -27 AGGATCACTACGCTTGGAGCCC 18 66 1 CGCTTGGAGC 0.815547 -12 CCTACCGGTTGGTTGGTAGCGTCGCCGATC 26 142 1 GGTTGGTAGC 0.0962423 -56 GCGCGCCGAGCGGCCCATAAC 28 2 1 CGCGCCGAGC 0.73645 -206 TGATGGCTATGGCTACGAGCTGTGCGAACA 29 26 1 GGCTACGAGC 0.49009 -161 CCTTAGCCCCCGCGGGCACCGCTGGGCGAG 29 121 1 CGCGGGCACC 0.791133 -66 GGAATAATGCGGCGTGGACATTGGTGACGA 31 85 0 GGCGTGGACA 0.413175 -112 CGCATTATTCCGCTTCGAGCGGTGAACCGC 31 104 1 CGCTTCGAGC 0.626831 -93 CGTTGATTTCCTCGTGGACCAGGATCATGC 32 64 1 CTCGTGGACC 0.586344 -237 CAACGTCCAGGTCGGCGACCGCAATACCGA 32 121 1 GTCGGCGACC 0.691205 -180 GCATGTGACGGGCGTGGACTTGATCGGTCG 32 184 1 GGCGTGGACT 0.640162 -117 CAGGAGGTTCGGCGGGGCGTTACCTTTGCG 37 14 0 GGCGGGGCGT 0.278959 -86 GGGTGTTCGCGGGTGCGACCCGTCAAGCCT 37 65 1 GGGTGCGACC 0.501531 -35 CGCGGTGTGCCGCGGCGTCCGCGCGGTCGC 38 62 1 CGCGGCGTCC 0.638072 -163 TCGTGCCCGACTCGTGGAGCGACTCGGCGC 38 92 1 CTCGTGGAGC 0.668525 -133 AGCGCGGCGAGGCGGCGACCCATTCTCCCG 38 193 1 GGCGGCGACC 0.96564 -32 GCCCGCTTGCGGGGGAGAGCGGCGCCG 39 51 1 GGGGGAGAGC 0.558302 -17 GCGATGTCGTGGCGGGGTGCAAAACTATTG 41 13 0 GGCGGGGTGC 0.915186 -49 GCCACGACATCGCGGGTATCCGCGCCGATA 41 30 1 CGCGGGTATC 0.585231 -32 TTAACAGGGGGGCTGGTAGCGCAGGTGCGT 42 20 1 GGCTGGTAGC 0.800167 -79 AGACCTTTCGCGCGTGTGGCGTCTGGAAAA 43 66 1 CGCGTGTGGC 0.249117 -235 GGCGACTCTGGGCGTCGACCCATAACGAGG 43 254 0 GGCGTCGACC 0.917059 -47 GCAAAGCGATGGGGAGGAGCGGCGCCAGTG 45 51 1 GGGGAGGAGC 0.748291 -123 GCAAAGCGATGGGGAGGAGCGGCGCCAGTG 45 104 1 GGGGAGGAGC 0.748291 -70 GCAAAGCGATGGGGAGGAGCGGCGCCA 45 157 1 GGGGAGGAGC 0.748291 -17 GGCTGGCCACCGCGGGTTGCCGATCGCGTA 46 43 0 CGCGGGTTGC 0.589922 -92 CACCCCTTAGCGCGTGTACCGTCAAAGCAC 52 39 1 CGCGTGTACC 0.795092 -54 TGTGGAATGTGGGGTGGAGCAACGGGCCGC 54 25 0 GGGGTGGAGC 0.894635 -167 CATCTCCGTCGGCGTTGACCCCCGTGAGAG 55 14 1 GGCGTTGACC 0.630107 -28 CTGTCGCCGCCGCGGCCAGCATCTCCGGGT 56 83 0 CGCGGCCAGC 0.67186 -154 GCGGTGACCTGGCTGGTAGCTTAGGCACGT 56 162 1 GGCTGGTAGC 0.800167 -75 CTGGGGTATCGGCGGAGAGTGCCTAGCGTT 60 80 0 GGCGGAGAGT 0.273687 -221 ********** Masking position 2 Map Score: 33.3068 Number of sites scoring better than the average of aligned sites = 13117 Number in coding regions = 12181 Number in noncoding regions = 936 Number of orfs with sites within 600 bp upstream = 666 Fraction of orfs with sites within 600 bp upstream = 0.106971 Motif number 15 CCAGAGTTGGCCAGCGCTATCCGACGATCAG 1 12 1 CCAGGCTATC 0.793425 -90 CCGACGATCAGCAGCGCAACCATGGCCCAGG 1 32 1 GCAGGCAACC 0.947997 -70 GGCATGCCATGCTACCTAAGTAAGTT 2 73 0 GCCAGCTACC 0.68446 -16 GGCGCTCATCCTGTGCTCCCTCTGGTTCTC 3 23 0 CCTGGCTCCC 0.768947 -20 GTAGGCGTCACCGGCGCCAGCACAGTGGCAT 5 35 1 CCGGGCCAGC 0.67895 -266 CCGCAGCCTGCCAAAGCCATCGCTGTACCGA 6 41 0 CCAAGCCATC 0.438309 -52 CCTACGGCCCGCTAGGCTATCGACCA 10 6 0 GCTAGCTATC 0.483539 -30 GCCGCGAGGCTACCGGGCCGGGGC 12 4 1 GCGAGCTACC 0.75954 -32 GCCGTATGCCGCTACGCAACCATTTCGACAG 20 27 1 GCTAGCAACC 0.843362 -35 GATGCGCGCCGCAGCGATACCTTGCCCAACC 24 35 1 GCAGGATACC 0.402242 -122 CCTGGGGCCGGCAAAGCACCCGGCGTCCCGT 26 22 1 GCAAGCACCC 0.441332 -176 GCGAAACAGGGCAGTGCTAACCTACCGGTTG 26 122 1 GCAGGCTAAC 0.875032 -76 CTTGGGATCGGCGACGCTACCAACCAACCGG 26 146 0 GCGAGCTACC 0.759595 -52 ATGGCTACGAGCTGTGCGAACATCCGCTCAA 29 34 1 GCTGGCGAAC 0.600643 -153 CGCGGGCACCGCTGGGCGAGCCACGATCTAG 29 131 1 GCTGGCGAGC 0.635187 -56 CGCCCGTGACCCAATGCCACCGCTAGCAAGC 31 27 0 CCAAGCCACC 0.861638 -170 ACGGCATGCACCAGGGCAACCCGTATCGTCA 31 60 1 CCAGGCAACC 0.95668 -137 ACAGCCGGGCCCCGGGCCACCCATCGCC 36 8 0 CCCGGCCACC 0.819134 -92 GCGATTATTGCCTGCGCTAGCGTGA 40 5 0 CCTGGCTAGC 0.8942 -25 GAACCACGCACCTGCGCTACCAGCCCCCCTG 42 24 0 CCTGGCTACC 0.96346 -75 ATTAGGGCAGCCTGTGCTAACAGGGGAGGGT 42 76 1 CCTGGCTAAC 0.879472 -23 GATAAACTGACCTGCGCATCGCCTCCGTAGC 43 117 1 CCTGGCATCG 0.148359 -184 GCTCTATCCACCTGAGCTACGGAGGCGATGC 43 132 0 CCTGGCTACG 0.839363 -169 CGGCGACGATGCAGAGCAAAGCGATGGGGAG 45 36 1 GCAGGCAAAG 0.499928 -138 CGGCGACGATGCAGAGCAAAGCGATGGGGAG 45 89 1 GCAGGCAAAG 0.499928 -85 CGGCGACGATGCAGAGCAAAGCGATGGGGAG 45 142 1 GCAGGCAAAG 0.499928 -32 GACGGCTGGCCGAGTGCTACCGTCGAACGCG 51 25 0 CGAGGCTACC 0.547143 -190 TCCGGGTTCACCAATGCAAACCACATGGCCG 56 59 0 CCAAGCAAAC 0.677236 -178 TAAAGACGTGCCTAAGCTACCAGCCAGGTCA 56 166 0 CCTAGCTACC 0.900527 -71 GGGTTCGCTACCTAAGCAAGCACTTGCTTGG 58 23 0 CCTAGCAAGC 0.676469 -32 AGGCGTCCATCCAGCGCCAGCAACGTCGCAT 60 172 1 CCAGGCCAGC 0.853253 -129 **** ****** Masking position 6 Map Score: 27.6523 Number of sites scoring better than the average of aligned sites = 5350 Number in coding regions = 5000 Number in noncoding regions = 350 Number of orfs with sites within 600 bp upstream = 307 Fraction of orfs with sites within 600 bp upstream = 0.0493093