AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00400_mtub_reg_300.orf -o00400_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0012 93 hypothetical protein Rv0012 #2 pabA 36 pabA #3 aspC 30 aspC #4 Rv0338c 108 hypothetical protein Rv0338c #5 Rv0339c 185 hypothetical protein Rv0339c #6 Rv0858c 156 hypothetical protein Rv0858c #7 pabB 115 pabB #8 Rv1019 254 hypothetical protein Rv1019 #9 mfd 58 mfd #10 lpqU 87 lpqU #11 eno 96 eno #12 fdxC 212 fdxC #13 Rv1178 32 hypothetical protein Rv1178 #14 nadA 48 nadA #15 hisD 99 hisD #16 trpE 140 trpE #17 trpC 89 trpC #18 trpB 68 trpB #19 PE 300 PE #20 Rv1647 77 hypothetical protein Rv1647 #21 pheS 195 pheS #22 Rv1688 58 hypothetical protein Rv1688 #23 trpD 157 trpD #24 cobC 300 cobC #25 trpE2 300 trpE2 #26 alaS 90 alaS #27 Rv2556c 106 hypothetical protein Rv2556c #28 aroA 54 aroA #29 mhpE 60 mhpE #30 Rv3536c 72 hypothetical protein Rv3536c #31 fadD3 47 fadD3 #32 tyrA 199 tyrA #33 hisC2 300 hisC2 #34 pheA 95 pheA Motif number 1 TTCTATCGTTGCACCCCGGGCCATTCGTCG 1 49 0 GCACCCCGGG 0.800653 -45 TGTGCGACTTTCGCCGCGAGAAAGGCTGTC 4 26 0 TCGCCGCGAG 0.947442 -83 GCGGAACCCGCCGGCCCCGGGGCGCCGTTA 5 88 1 CCGGCCCCGG 0.501821 -98 TAGGGGAAATGCGGGGCTGCGGGACGGGCT 5 132 1 GCGGGGCTGC 0.577671 -54 GGCTGCGGGACGGGCTGGGGCTATGGTGAG 5 146 1 CGGGCTGGGG 0.515767 -40 TATGGTGAGGGAGCCGCCGCCGACCAGCC 5 167 1 GAGCCGCCGC 0.517179 -19 CACCCTAACAGGGCCCCCGGCCAACCTGTT 6 82 1 GGGCCCCCGG 0.903206 -75 GCGACGATGCGCGCCGCAGCGATACCTTGC 6 118 0 GCGCCGCAGC 0.60907 -39 GGTCTCCGTCCCGGGGGGTGTTGCTGTGCG 7 81 0 CCGGGGGGTG 0.664452 -35 TCCGTGACCGGCTCCGGTCTCCGTCCC 7 99 0 CCGGCTCCGG 0.741361 -17 CGTCTACCCACCGGCCCCACGCAAACCGAT 8 157 1 CCGGCCCCAC 0.828219 -98 CGCGCGTCACCCGCGTCGGGTTTTCCGGCG 8 230 0 CCGCGTCGGG 0.975491 -25 CGCGGGTGACGCGCGCCAGG 8 245 1 GCGCGCCAGG 0.659657 -10 TAGTCAACATTGGGCCCGGCTTCCCCGCCC 9 12 0 TGGGCCCGGC 0.613664 -47 GGCCATTCTAGGGCGCCGAGGTTAGTCAAC 9 34 0 GGGCGCCGAG 0.765543 -25 CCGCCCCGAGTGCGACGGGG 10 1 1 CCGCCCCGAG 0.986478 -87 CTAACAGCGGTCGGGGCCAGCCAACCCAAG 11 40 1 TCGGGGCCAG 0.800309 -57 AAGGCTTCCTCCGGGCCCTGCTGAGGCAAT 12 133 0 CCGGGCCCTG 0.523596 -80 GCCGGCTGGGGGCAGCACCCG 13 2 1 CCGGCTGGGG 0.91401 -31 TCCGCCGCGAGCGGGTGCTGC 13 22 0 CCGCCGCGAG 0.986329 -11 TGCCGCCCCTTCCGCGCTCCAA 14 37 0 CCGCCCCTTC 0.885443 -12 GGCGGCTCCTCTTTGCCGGTC 15 2 1 GCGGCTCCTC 0.845555 -98 CTACGTGACCGCGCCGCCGCCC 15 88 1 GCGCCGCCGC 0.507895 -12 GACTCCTTGCGCGCCGCTTCGCGGCTGGGG 16 37 1 GCGCCGCTTC 0.882911 -104 GCGCCGCTTCGCGGCTGGGGGTGCCCCCAT 16 47 1 GCGGCTGGGG 0.920358 -94 CGCGCAAACGGCGCGCATGGGGGCACCCCC 16 63 0 GCGCGCATGG 0.783303 -78 CGCGCCGTTTGCGCGGCGTGCATCGTCGTC 16 78 1 GCGCGGCGTG 0.939845 -63 GATACGCCGATCGGCCCGGGCGTAGCCCGA 16 106 0 TCGGCCCGGG 0.96125 -35 CGGACCGCGCGCTGACGGTCGCTA 17 5 1 CCGCGCGCTG 0.530635 -85 AAATTGACGAGCGCGTGTGGGTGACAGTGG 17 54 1 GCGCGTGTGG 0.765937 -36 CCGTCGATGAGCCGCTTGCATCTTGAGC 18 9 1 GAGCCGCTTG 0.565375 -60 TCCGCCGATATCGCGCCGTGTCACCCAGTG 19 71 1 TCGCGCCGTG 0.862155 -230 TCACCCAGTGCCTCCTCCGGGTGGCAACGA 19 91 1 CCTCCTCCGG 0.749631 -210 GCCCCCGCACGCACCGCGGGCCAAGCTATG 19 143 0 GCACCGCGGG 0.771683 -158 CGCGGTGCGTGCGGGGGCAGGGAGTCCAAT 19 155 1 GCGGGGGCAG 0.648236 -146 CGTCTGCGGACAGCCGCCGCAAACCGCGTG 20 12 1 CAGCCGCCGC 0.506621 -66 TTCGGTCGGCCCGGCTCGGCACGCGTTGTG 21 17 0 CCGGCTCGGC 0.960607 -179 TCCAGTTTCCGCTCCGCGACGATGCGGGCG 21 106 1 GCTCCGCGAC 0.694586 -90 CCGCGACGATGCGGGCGGTCCGAATAGCCT 21 119 1 GCGGGCGGTC 0.683599 -77 AAGGAGAGTGGCGCCGCGTGGGTGATCCCC 21 156 1 GCGCCGCGTG 0.95257 -40 CGATTGTGCACCGGCCCTTGACAAACCCGC 22 33 0 CCGGCCCTTG 0.808398 -26 ACCGAAATTTCCGACCCGGGTAGAGTTCGA 23 38 0 CCGACCCGGG 0.802632 -120 CCAACCCCAACCGCGCCCTGAACACGTCGA 23 113 0 CCGCGCCCTG 0.615889 -45 ATTCTCTTGTCGGCCGCCAGTGCCTGGGAG 24 11 1 CGGCCGCCAG 0.861356 -290 CGATCAACTACCGCCTCGGCAAGCTCCCGC 24 45 1 CCGCCTCGGC 0.981579 -256 GATGGCTCGGGCGGCGGGAGCTTGCCGAGG 24 58 0 GCGGCGGGAG 0.918368 -243 CCGATCGAATGCGCCGCTGCGGCACGTCGC 24 102 1 GCGCCGCTGC 0.72844 -199 GGTCAACTGACAGCGGCGACGTGCCGCAGC 24 117 0 CAGCGGCGAC 0.695938 -184 CGTGTGCTCATCGCCCAGGCACAGCTGCTT 24 201 1 TCGCCCAGGC 0.808172 -100 ACGATCATCACCGCCGACGCCCTGTTAGCT 24 237 1 CCGCCGACGC 0.778948 -64 GCGGTTGTCGCCGCGTAGACAACGCGTCGG 24 279 1 CCGCGTAGAC 0.499105 -22 GCGTGAGTTGGCGGGCATGGTAACCGGCGA 25 74 1 GCGGGCATGG 0.642624 -227 GCAGAGGCGGTCGCGGCCGGTGCTCGCCGG 25 97 0 TCGCGGCCGG 0.856264 -204 CCGGCCGCGACCGCCTCTGCCTGCGGAAAT 25 107 1 CCGCCTCTGC 0.936822 -194 GCCGGACGGTCCGCGGACTGCGTTTCGCAG 25 144 0 CCGCGGACTG 0.739815 -157 CGCGGACCGTCCGGCCGTGGGTGGGTCCTG 25 159 1 CCGGCCGTGG 0.543315 -142 GGTCCTGTCGCCGCCCCGGCTGGTGCCATT 25 182 1 CCGCCCCGGC 0.800532 -119 GGAAGAAAATGCTCGTCGGGAGCAAATGGC 25 206 0 GCTCGTCGGG 0.632302 -95 ATGGGTCGCAGCCCCCCGGGGTCGTCGCAT 25 253 0 GCCCCCCGGG 0.693969 -48 TCATTACCTTCCTCCGACGGGCCGGCCGGG 27 11 1 CCTCCGACGG 0.505262 -96 CTCCGACGGGCCGGCCGGGGCAATGGGCAA 27 22 1 CCGGCCGGGG 0.584056 -85 GCAGGTTGGCGCGCCCCCACCGTAGGCTGG 27 70 1 GCGCCCCCAC 0.945459 -37 CCCACGACACCCGCCGACACGGCAGGATGA 28 31 1 CCGCCGACAC 0.850662 -24 ATTCTTGGACGCGCGGCTGGTGTC 29 5 0 GCGCGGCTGG 0.734856 -56 CAGTGTCAGCCCGCACCCTTGCCGGA 29 45 0 CAGCCCGCAC 0.522308 -16 ATAGAATTGCTCGGGTCGGGCGCTACTGGC 30 23 1 TCGGGTCGGG 0.825218 -50 GCTCCCATGGGCGCCTACGGTAGTCGCTGA 32 24 1 GCGCCTACGG 0.900121 -176 GCGGCGCCCTGAGGGGCGACCAGATCTCCG 32 86 0 GAGGGGCGAC 0.542018 -114 GCCCCTCAGGGCGCCGCCACGGGCTACCTA 32 99 1 GCGCCGCCAC 0.91528 -101 CACACCGGTGGCGCCGCGACAGTCCGAGTC 32 146 0 GCGCCGCGAC 0.982168 -54 TCGAATCTCTTCGGGCGCGCTCTTTACTAG 33 31 0 TCGGGCGCGC 0.552397 -270 CTGAAGACAAGCGCCCGTAGCTCAACGGAT 33 95 0 GCGCCCGTAG 0.854996 -206 TCAAATCCTCTCGCCTCCGCAGTCCTTTAG 33 134 0 TCGCCTCCGC 0.922337 -167 TGAGCCCCATTCGGCCGCTCTGGCACGCCT 33 202 1 TCGGCCGCTC 0.51698 -99 CGGACTCCCCGAGCCGCCGGAGGCCTAGCG 33 254 1 GAGCCGCCGG 0.524664 -47 CTAGCGTACACAGCCGCCACATATGCTGTC 33 278 1 CAGCCGCCAC 0.788751 -23 ********** Masking position 3 Map Score: 110.518 Number of sites scoring better than the average of aligned sites = 92449 Number in coding regions = 86469 Number in noncoding regions = 5980 Number of orfs with sites within 600 bp upstream = 1569 Fraction of orfs with sites within 600 bp upstream = 0.252008 Motif number 2 CTCGACAAGACGACGAATGGCCCGGGGTGC 1 39 1 CGACGAATGG 0.867609 -55 ACGACTGCCGGCAGGGTCAGG 2 2 1 CGACTGCCGG 0.958597 -35 TACCCGCCTCCTTGCCCCACCCCC 5 5 1 CGCCTCCTTG 0.885372 -181 TGCTAACACGGGACTAACGGGGGTGGGGCA 5 23 0 GGACTAACGG 0.687454 -163 CCCCTAACGGCGCCCCGGGGCCGGCGGGTT 5 92 0 CGCCCCGGGG 0.734713 -94 CGGGGCTGCGGGACGGGCTGGGGCTATGGT 5 143 1 GGACGGGCTG 0.888953 -43 CACCCTAACAGGGCCCCCGGCCAACCTGTT 6 82 1 GGGCCCCCGG 0.83694 -75 CGGCGCGCATCGTCGCCCGGATAGGCTCGA 6 132 1 CGTCGCCCGG 0.983892 -25 CGAGCGTCAACGTCTCGCGGTCAGCGAGAA 7 30 1 CGTCTCGCGG 0.912164 -86 CTCCGGTCTCCGTCCCGGGGGGTGTTGCTG 7 85 0 CGTCCCGGGG 0.63326 -31 CTTGAAGCTCCGTCGCCAGGACTCGAACCT 8 19 1 CGTCGCCAGG 0.893834 -236 GATTACACCACGACGGATTGCACATCGATG 8 81 1 CGACGGATTG 0.854325 -174 TCACGATCATCGTCCCATGGGTTTGTTGAC 10 33 0 CGTCCCATGG 0.831707 -55 GCAGCAGCTACGACGCAAGGAGAACCCA 11 79 1 CGACGCAAGG 0.897422 -18 CCGTGTACGCCGACGCATGTGCCAAGTGGT 12 63 1 CGACGCATGT 0.422959 -150 ACATACACGTCGACCACTTGGCACATGCGT 12 75 0 CGACCACTTG 0.683778 -138 ACCGATTGCCCGACTCCTTGCGCGCCGCTT 16 26 1 CGACTCCTTG 0.93113 -115 CGTCGTCGGGCTACGCCCGGGCCGATCGGC 16 101 1 CTACGCCCGG 0.754514 -40 ATTTTTCATTGGACTCCCTGCCCCCGCACG 19 162 0 GGACTCCCTG 0.930975 -139 AGCCCGACTCCTTGTACACGTTGT 19 287 0 CGACTCCTTG 0.93113 -14 TAGGTGATTCGGTCGGCCCGGCTCGGCACG 21 24 0 GGTCGGCCCG 0.756514 -172 AGCGGAAACTGGACTGATGGACGTACCCGA 21 89 0 GGACTGATGG 0.78087 -107 GAGGCTATTCGGACCGCCCGCATCGTCGCG 21 120 0 GGACCGCCCG 0.748279 -76 AGGAGAGTGGCGCCGCGTGGGTGATCCCCC 21 157 1 CGCCGCGTGG 0.958487 -39 CGACACAATCGACTCGAGGGGGGGATCAC 21 177 0 CGACTCGAGG 0.799858 -19 CAAACCCGCACGACTGGCGGATATTCATCA 22 12 0 CGACTGGCGG 0.920807 -47 AACGGCCGGGCGACACGCGGAACTGACTTA 23 67 0 CGACACGCGG 0.743265 -91 CTGAACACGTCGACGACTTGCGCTAACCAA 23 96 0 CGACGACTTG 0.864321 -62 ATGAGCACACGGTCGAATGGATGTCGATGG 24 182 0 GGTCGAATGG 0.599536 -119 TCATCACCGCCGACGCCCTGTTAGCTGCCT 24 241 1 CGACGCCCTG 0.983956 -60 CGCCGACGCGTTGTCTACGCGGC 24 288 0 CGACGCGTTG 0.912023 -13 ACCCACCCACGGCCGGACGGTCCGCGGACT 25 155 0 GGCCGGACGG 0.902758 -146 TGGGTCCTGTCGCCGCCCCGGCTGGTGCCA 25 180 1 CGCCGCCCCG 0.941733 -121 GGACATGCGACGACCCCGGGGGGCTGCGAC 25 249 1 CGACCCCGGG 0.906604 -52 GCGGGCCGAATTGGGCCGTCGGA 26 4 1 GGCCGAATTG 0.463487 -87 TCCTCCGACGGGCCGGCCGGGGCAATGGGC 27 20 1 GGCCGGCCGG 0.961909 -87 AATCCATTGACGTCGGATTGCCCATTGCCC 27 39 0 CGTCGGATTG 0.674913 -68 CCGTAGGCTGGGACGGGTGGATACCGAT 27 89 1 GGACGGGTGG 0.935398 -18 ATGAATTCTTGGACGCGCGGCTGGTGTC 29 9 0 GGACGCGCGG 0.982519 -52 CATCTGGTCAGGAGGCCTGGTCAGCGACTA 32 44 0 GGAGGCCTGG 0.65597 -156 TAGCCCGTGGCGGCGCCCTGAGGGGCGACC 32 95 0 CGGCGCCCTG 0.893585 -105 GCTTGGGCTGGGACTCATCGGCGGTTCCAT 32 179 1 GGACTCATCG 0.640137 -21 TTGAACCTCCGGTCCCCTTGAAGGGGGACA 33 160 1 GGTCCCCTTG 0.756582 -141 GTGCCAGAGCGGCCGAATGGGGCTCACTGC 33 198 0 GGCCGAATGG 0.706844 -103 CGCTCTGGCACGCCTCCATGGACTTCCCGA 33 217 1 CGCCTCCATG 0.621174 -84 GAGAGTACCCGGACTCCCCGAGCCGCCGGA 33 245 1 GGACTCCCCG 0.881772 -56 ********** Masking position 2 Map Score: 52.8978 Number of sites scoring better than the average of aligned sites = 24637 Number in coding regions = 22881 Number in noncoding regions = 1756 Number of orfs with sites within 600 bp upstream = 1003 Fraction of orfs with sites within 600 bp upstream = 0.161099 Motif number 3 ACGGGACTAACGGGGGTGGGGCAAGGAGGCGG 5 14 0 CGGGGGTGGC 0.809738 -172 AGGGAGCCGCCGCCGACCAGCC 5 174 1 CGCCGACACC 0.989537 -12 CTAACAGGGCCCCCGGCCAACCTGTTGGTTGG 6 86 1 CCCCGGCACC 0.960216 -71 GAGCCTATCCGGGCGACGATGCGCGCCGCAGC 6 128 0 GGGCGACAGC 0.667427 -29 TGACCGGCTCCGGTCTCCGTCCCGGGGGGTGT 7 90 0 CGGTCTCGCC 0.521194 -26 GTTCGAGTCCTGGCGACGGAGCTTCAAGGAGG 8 15 0 TGGCGACGGC 0.84612 -240 TGACTTTAGACGGTGTCAACGCCGTCAGCACA 8 111 1 CGGTGTCAGC 0.922971 -144 ACGGCGACAGCGTTGACTGTGCTGACGGCGTT 8 128 0 CGTTGACGGC 0.934024 -127 TCAACGCTGTCGCCGTCTACCCACCGGCCCCA 8 144 1 CGCCGTCACC 0.968925 -111 ACCCACCGGCCCCACGCAAACCGATACCCTTG 8 162 1 CCCACGCACC 0.271962 -93 CCGGATAAGGCGCCGGAAAACCCGACGCGGGT 8 220 1 CGCCGGAACC 0.944155 -35 GAAAACCCGACGCGGGTGACGCGCGCCAGG 8 235 1 CGCGGGTAGC 0.886105 -20 CCGGGCCCAATGTTGACTAACCTCGGCGCCCT 9 23 1 TGTTGACACC 0.602286 -36 CCCATGGGTTTGTTGACTACCCCGTCGCACTC 10 18 0 TGTTGACACC 0.602285 -70 CTAACAGCGGTCGGGGCCAGCCAACCCAAGAC 11 40 1 TCGGGGCACC 0.425679 -57 CAATCCGGCTTGCCGTCTATGCTGCCCGG 12 8 0 TGCCGTCAGC 0.761503 -205 TCGGCGTACACGGTCAATATGCACCTAGTTGC 12 44 0 CGGTCAAAGC 0.46563 -169 CCTGTTGGAGCGCGGAAGGGGCGGCA 14 33 1 CGCGGAAGGC 0.854391 -16 CCCCCATGCGCGCCGTTTGCGCGGCGTGCATC 16 70 1 CGCCGTTGGC 0.791175 -71 GGGCGTAGCCCGACGACGATGCACGCCGCGCA 16 87 0 CGACGACAGC 0.788921 -54 TTCCCAGATACGCCGATCGGCCCGGGCGTAGC 16 110 0 CGCCGATGCC 0.911533 -31 CGCGCGCTGACGGTCGCTACCCTTCATGGACG 17 16 1 CGGTCGCACC 0.834223 -74 CCGTCGATGAGCCGCTTGCATCT 18 2 1 CGTCGATACC 0.847154 -67 GCGCGGAAGATCCGGGGTGGATA 18 56 0 CGCGGAAACC 0.875487 -13 CTATCGTGGGCGCAGACTAACCTGGCACG 19 8 0 CGCAGACACC 0.91146 -293 GGACAACGCGCGTTGTCAATGCCTATCGTGGG 19 30 0 CGTTGTCAGC 0.86075 -271 CGGACCAAATCGTGGACAACGCGCGTTGTCAA 19 43 0 CGTGGACAGC 0.95099 -258 CGATTTGGTCCGCCGATATCGCGCCGTGTCAC 19 63 1 CGCCGATTGC 0.705684 -238 CAGCTGCAGTCCTCGTCCACGCTCGTTGCCAC 19 111 0 CCTCGTCAGC 0.766838 -190 CCGCACGCACCGCGGGCCAAGCTATGCAGCTG 19 137 0 CGCGGGCAGC 0.981612 -164 ACGCGGTTTGCGGCGGCTGTCCGCAGACGG 20 9 0 CGGCGGCGCC 0.982866 -69 GCATCAAACACGCTGATCACGCGGTTTGCGGC 20 27 0 CGCTGATAGC 0.879504 -51 GTCCCGCACAACGCGTGCCGAGCC 21 3 1 CCCGCACAGC 0.629526 -193 AGTTTCCGCTCCGCGACGATGCGGGCGGTCCG 21 109 1 CCGCGACAGC 0.952559 -87 CCACTCTCCTTGCTGACGAGGCTATTCGGACC 21 135 0 TGCTGACAGC 0.817445 -61 AGTGGCGCCGCGTGGGTGATCCCCCCCTCGAG 21 162 1 CGTGGGTACC 0.724594 -34 GTGCACCGGCCCTTGACAAACCCGCACGACTG 22 26 0 CCTTGACACC 0.800902 -33 ACCAAACGGCCGGGCGACACGCGGAACTGACT 23 69 0 CGGGCGAAGC 0.481362 -89 GCGCTGATGGTCCCATGAGGATC 23 145 0 CGCTGATGCC 0.822451 -13 GGCAAGCTCCCGCCGCCCGAGCCATCGGCTTC 24 62 1 CGCCGCCGGC 0.844395 -239 CAACTGACAGCGGCGACGTGCCGCAGCGGCGC 24 112 0 CGGCGACTCC 0.915206 -189 CGCCGACGCGTTGTCTACGCGGCGACAACC 24 281 0 CGTTGTCAGC 0.860749 -20 CGGTGCTCGCCGGTTACCATGCCCGCCAACTC 25 78 0 CGGTTACAGC 0.376352 -223 AAACGCAGTCCGCGGACCGTCCGGCCGTGGGT 25 149 1 CGCGGACGCC 0.969439 -152 CAGTCGAGCACGTTGGACATGCGACGACCCCG 25 235 1 CGTTGGAAGC 0.770208 -66 CGAATTGGGCCGTCGGACAGCCTTCTCATAAT 26 17 1 CGTCGGAACC 0.867028 -74 TCTCATAATCCGGCGAATAGGCTGGTAATGGA 26 40 1 CGGCGAAAGC 0.931756 -51 TTGCCCATTGCCCCGGCCGGCCCGTCGGAGGA 27 20 0 CCCCGGCGCC 0.941284 -87 AATCCATTGACGTCGGATTGCCCATTGCCCCG 27 37 0 CGTCGGATCC 0.489581 -70 CCACGACACCCGCCGACACGGCAGGATGAAGC 28 32 1 CGCCGACCGC 0.857575 -23 TCGGCGAAGTCCCCTCGTAGGCG 30 60 0 CGGCGAATCC 0.635114 -13 GCCCTGTAGGCTAACCTACCAAGCAC 31 5 1 TGTAGGCACC 0.275778 -43 CTACGGTAGTCGCTGACCAGGCCTCCTGACCA 32 38 1 CGCTGACAGC 0.980334 -162 ACCAGATCTCCGCTGTCTGAGCACCATCTGGT 32 66 0 CGCTGTCGGC 0.920587 -134 CATAGGTAGCCCGTGGCGGCGCCCTGAGGGGC 32 99 0 CCGTGGCGGC 0.874032 -101 ACCGGTGGCGCCGCGACAGTCCGAGTCACAGT 32 141 0 CCGCGACGCC 0.927187 -59 AATCCTCTCGCCTCCGCAGTCCTTTAGGGGAC 33 129 0 CCTCCGCGCC 0.501308 -172 CCCGAGCCGCCGGAGGCCTAGCGTACACAGCC 33 261 1 CGGAGGCTGC 0.581091 -40 ******* * ** Masking position 12 Map Score: 71.7659 Number of sites scoring better than the average of aligned sites = 40978 Number in coding regions = 38375 Number in noncoding regions = 2603 Number of orfs with sites within 600 bp upstream = 1235 Fraction of orfs with sites within 600 bp upstream = 0.198362 Motif number 4 TCGGTTGAGGCCGCGTCCGTGTTCGGTGCGG 5 61 1 CCGCGTCGTG 0.95114 -125 GGCCCCGGGGCGCCGTTAGGGGATGGCCGCA 5 100 1 CGCCGTTGGG 0.86543 -86 TGGCCGGGGGCCCTGTTAGGGTGCCGGTACG 6 74 0 CCCTGTTGGG 0.838901 -83 TGCCGTTTCTCGCTGACCGCGAGACGTTGAC 7 35 0 CGCTGACGCG 0.598736 -81 TGACTTTAGACGGTGTCAACGCCGTCAGCAC 8 111 1 CGGTGTCACG 0.883442 -144 GGTGGGTAGACGGCGACAGCGTTGACTGTGC 8 138 0 CGGCGACGCG 0.675492 -117 AAACCGATACCCTTGTTGATGTGGCCGGACC 8 179 1 CCTTGTTATG 0.348312 -76 CCGCCCCGAGTGCGACGGGGTAGT 10 4 1 CCCCGAGGCG 0.901941 -84 TGGCCCCGACCGCTGTTAGCGTAAAGCCTGG 11 28 0 CGCTGTTGCG 0.847651 -69 GCACATGCGTCGGCGTACACGGTCAATATGC 12 54 0 CGGCGTAACG 0.809131 -159 TCCGCCGCGAGCGGGTGCTGCCCCC 13 18 0 CCGCGAGGGG 0.813579 -15 CCCCCATGCGCGCCGTTTGCGCGGCGTGCAT 16 70 1 CGCCGTTGCG 0.968071 -71 GGACAACGCGCGTTGTCAATGCCTATCGTGG 19 31 0 CGTTGTCATG 0.661324 -270 TGACAACGCGCGTTGTCCACGATTTGGTCCG 19 44 1 CGTTGTCACG 0.876629 -257 CAGCTGCAGTCCTCGTCCACGCTCGTTGCCA 19 112 0 CCTCGTCACG 0.868918 -189 GCTTGGCCCGCGGTGCGTGCGGGGGCAGGGA 19 147 1 CGGTGCGGCG 0.862098 -154 GCATCAAACACGCTGATCACGCGGTTTGCGG 20 28 0 CGCTGATACG 0.756161 -50 TGACGACCTCGGTGTTTGTGGCACAAGTCG 20 58 0 CGGTGTTGTG 0.923695 -20 GCTCGGCACGCGTTGTGCGGGAC 21 3 0 CGTTGTGGGG 0.889157 -193 ACTTGCGTCACGCCGTTAGCGGGCAAGTCGG 21 62 1 CGCCGTTGCG 0.85101 -134 AGTTTCCGCTCCGCGACGATGCGGGCGGTCC 21 109 1 CCGCGACATG 0.601788 -87 GAGAGTGGCGCCGCGTGGGTGATCCCCCCCT 21 159 1 CCGCGTGGTG 0.913068 -37 CTGCGGTGCGCAGTGTGTGCGTGGTCAACTG 24 138 0 CAGTGTGGCG 0.739102 -163 GCAGCTAACAGGGCGTCGGCGGTGATGATCG 24 238 0 GGGCGTCGCG 0.860487 -63 CGCCGACGCGTTGTCTACGCGGCGACAAC 24 282 0 CGTTGTCACG 0.770835 -19 CGCTGCGAAACGCAGTCCGCGGACCGTCCGG 25 142 1 CGCAGTCGCG 0.663173 -159 TCCCAGCCTACGGTGGGGGCGCGCCAACCTG 27 71 0 CGGTGGGGCG 0.919645 -36 CTTCATCCTGCCGTGTCGGCGGGTGTCGTGG 28 32 0 CCGTGTCGCG 0.909337 -23 GGCGAAGTCCCCTCGTAGGCGTGACCGGGCC 30 50 0 CCTCGTAGCG 0.720822 -23 CTACGGTAGTCGCTGACCAGGCCTCCTGACC 32 38 1 CGCTGACAGG 0.574113 -162 ACCAGATCTCCGCTGTCTGAGCACCATCTGG 32 67 0 CGCTGTCGAG 0.795159 -133 CATAGGTAGCCCGTGGCGGCGCCCTGAGGGG 32 100 0 CCGTGGCGCG 0.893531 -100 GCGGCGCCACCGGTGTGCGTGCTTGGGCTGG 32 159 1 CGGTGTGGTG 0.945579 -41 GTCGGCTTTGCGTCGTTAGGGTTGTGAGC 34 77 1 CGTCGTTGGG 0.851018 -19 ******* *** Masking position 5 Map Score: 45.6048 Number of sites scoring better than the average of aligned sites = 25457 Number in coding regions = 24138 Number in noncoding regions = 1319 Number of orfs with sites within 600 bp upstream = 771 Fraction of orfs with sites within 600 bp upstream = 0.123836 Motif number 5 GTCTTGTCGAGGTAGTCCCGCCAGATCCCGAGGA 1 16 0 GGGCCGCCAG 0.83692 -78 ACAGGCTACCGCCTGACCCTGCCGGCAGTCGT 2 9 0 GCGCCTGCCG 0.96474 -28 TACCCGCCTCCTTGCCCCACCCCCGTTAGTCCC 5 10 1 CCGCCACCCC 0.472164 -176 CCCGGGGCCGGCGGGTTCCGCACCGAACACGGAC 5 75 0 GCGCCGCACC 0.828207 -111 TCACCATAGCCCCAGCCCGTCCCGCAGCCCCGCA 5 141 0 CCGCGTCCCG 0.352872 -45 GCTATGGTGAGGGAGCCGCCGCCGACCAGCC 5 165 1 GGGGCCGCCG 0.441612 -21 GCGCGCCGCAGCGATACCTTGCCCAACCAACAGG 6 106 0 GCTCTTGCCC 0.723463 -51 CTCGCTGACCGCGAGACGTTGACGCTCGGTGTGA 7 24 0 GCGGTTGACG 0.280119 -92 AACGGCATTGGCATTGGCTGCTCGCACAGCAACA 7 59 1 GCTCTGCTCG 0.700044 -57 GTGACCGGCTCCGGTCTCCGTCCCGGGGGGTGTT 7 89 0 CCTCCGTCCC 0.417756 -27 TATCGGTTTGCGTGGGGCCGGTGGGTAGACGGCG 8 154 0 CGGCCGGTGG 0.594974 -101 CCGATACCCTTGTTGATGTGGCCGGACCGGATAA 8 182 1 TGGGTGGCCG 0.231588 -73 GTTTTCCGGCGCCTTATCCGGCCCTTTATCCGGT 8 207 0 GCTCCGGCCC 0.961229 -48 CATTGGGCCCGGCTTCCCCGCCCG 9 1 0 GGTCCGCCCG 0.939945 -58 CAGGCTTTACGCTAACAGCGGTCGGGGCCAGCCA 11 29 1 GCAGCGGTCG 0.241622 -68 GGACGGTCTTGGGTTGGCTGGCCCCGACCGCTGT 11 43 0 GGTCTGGCCC 0.847822 -54 TCCGGCTTGCCGTCTATGCTGCCCGG 12 3 0 CGTGCTGCCC 0.423027 -210 CATTGCCTCAGCAGGGCCCGGAGGAAGCCTTGGC 12 132 1 GCGCCGGAGG 0.689655 -81 CCCACACATAGCGGTATCTGGAAGACATGTTGAG 12 180 1 GCTCTGGAAG 0.0895448 -33 TCCGCCGCGAGCGGGTGCTGCCCCCAGCCGGC 13 9 0 GCGCTGCCCC 0.975062 -24 TGCCGCCCCTTCCGCGCTCCAACAGGTTTT 14 29 0 CCTGCGCTCC 0.49105 -20 CCGCTTCGCGGCTGGGGGTGCCCCCATGCGCGCC 16 50 1 GCGGTGCCCC 0.949934 -91 GTCGGGCTACGCCCGGGCCGATCGGCGTATCTGG 16 105 1 GCGCCGATCG 0.466119 -36 GCCTGCCGTTCCCTTCCCACTGTC 17 76 0 GCGGTTCCCT 0.121542 -14 ATCTATCCACCCCGGATCTTCCGCGC 18 53 1 CCGCTTCCGC 0.600511 -16 CCCTGCCCCCGCACGCACCGCGGGCCAAGCTATG 19 143 0 GCGCCGCGGG 0.632445 -158 ATTTTTCATTGGACTCCCTGCCCCCGCACGCACC 19 158 0 GGTCTGCCCC 0.83937 -143 TCCTTGTACACGTTGTACTGGCCGCAGCAATCCT 19 269 0 CGGCTGGCCG 0.944477 -32 CGCTGATCACGCGGTTTGCGGCGGCTGTCCGCAG 20 15 0 GCTGCGGCGG 0.839397 -63 TGACGACCTCGGTGTTTGTGGCACAAGTCGCATC 20 54 0 GGTGTGGCAC 0.205094 -24 TAGGTGATTCGGTCGGCCCGGCTCGGCACGCGTT 21 20 0 GGGCCGGCTC 0.440168 -176 GTCCATCAGTCCAGTTTCCGCTCCGCGACGATGC 21 97 1 CCTCCGCTCC 0.663343 -99 GGGGGATCACCCACGCGGCGCCACTCTCCTTGCT 21 153 0 CCGGCGCCAC 0.688698 -43 TAAGTCAGTTCCGCGTGTCGCCCGGCCGTTTGGT 23 67 1 CCGTCGCCCG 0.71659 -91 TCGCGATCTCCCAGGCACTGGCGGCCGACAAGAG 24 14 0 CCGCTGGCGG 0.915291 -287 GGCTCGGGCGGCGGGAGCTTGCCGAGGCGGTAGT 24 51 0 GCGCTTGCCG 0.927081 -250 CAACTGACAGCGGCGACGTGCCGCAGCGGCGCAT 24 110 0 CGGGTGCCGC 0.597768 -191 CACTGCGCACCGCAGAGCTTCCGGATCACCATCG 24 154 1 CGGCTTCCGG 0.504611 -147 AGGCCAAGCAGCTGTGCCTGGGCGATGAGCACAC 24 202 0 GCTCTGGGCG 0.464736 -99 GATTTCGTGTGCGTGAGTTGGCGGGCATGGTAAC 25 64 1 GCGTTGGCGG 0.395377 -237 ATGGTAACCGGCGAGCACCGGCCGCGACCGCCTC 25 90 1 GCGCCGGCCG 0.992122 -211 CATTTCCGCAGGCAGAGGCGGTCGCGGCCGGTGC 25 104 0 GGGGCGGTCG 0.804237 -197 GAAACGCAGTCCGCGGACCGTCCGGCCGTGGGTG 25 148 1 CCGCCGTCCG 0.784469 -153 GTGGGTGGGTCCTGTCGCCGCCCCGGCTGGTGCC 25 175 1 CCTCCGCCCC 0.932319 -126 CCCGGCTGGTGCCATTTGCTCCCGACGAGCATTT 25 196 1 GCTGCTCCCG 0.781375 -105 CTCCCGACGAGCATTTTCTTCCAGTCGAGCACGT 25 214 1 GCTCTTCCAG 0.249791 -87 GACGACCCCGGGGGGCTGCGACCCATTAAGTAGG 25 257 1 GGGGCGACCC 0.489272 -44 TACCTTCCTCCGACGGGCCGGCCGGGGCAATGGG 27 15 1 CGGCCGGCCG 0.968193 -92 TGGATTGGCAGGTTGGCGCGCCCCCACCGTAGGC 27 63 1 GGGGCGCCCC 0.948403 -44 CGCTTCATCCTGCCGTGTCGGCGGG 28 40 0 GCCCCTGCCG 0.453822 -15 CAGTGTCAGCCCGCACCCTTGCCGGATCCTTGAT 29 37 0 CCACTTGCCG 0.22243 -24 GCGTGACCGGGCCAGTAGCGCCCGACCCGAGCAA 30 29 0 GCGGCGCCCG 0.982891 -44 GGAGGCCCGTTGTGCTCCCATGGGCGCC 32 5 1 GCGGTGCTCC 0.732877 -195 GCTCAGACAGCGGAGATCTGGTCGCCCCTCAGGG 32 76 1 CGGCTGGTCG 0.70866 -124 GGCATAGGTAGCCCGTGGCGGCGCCCTGAGGGGC 32 99 0 GCGGCGGCGC 0.926175 -101 AGGTTCAAATCCTCTCGCCTCCGCAGTCCTTTAG 33 134 0 CCTCCTCCGC 0.469744 -167 AGCCCCATTCGGCCGCTCTGGCACGCCTCCATGG 33 204 1 GGGCTGGCAC 0.647894 -97 TGGCACGCCTCCATGGACTTCCCGAGAGTACCCG 33 222 1 CCGCTTCCCG 0.880796 -79 TACCCGGACTCCCCGAGCCGCCGGAGGCCTAGCG 33 250 1 CCGCCGCCGG 0.953525 -51 GTTAACTAATGCACGGTCTGGTCGCAAGAGTTGG 34 41 1 GCGCTGGTCG 0.897437 -55 ** * ******* Masking position 2 Map Score: 72.3476 Number of sites scoring better than the average of aligned sites = 73284 Number in coding regions = 68828 Number in noncoding regions = 4456 Number of orfs with sites within 600 bp upstream = 1448 Fraction of orfs with sites within 600 bp upstream = 0.232573 Motif number 6 AAGACGACGAATGGCCCGGGGTGCAACGATA 1 45 1 ATGGCCGGGG 0.864077 -49 AACGGCGCCCCGGGGCCGGCGGGTTCCGCAC 5 86 0 CGGGCCGGCG 0.932181 -100 GGCTGGTCGGCGGCGGCTCCCTC 5 173 0 CTGGCGGCGG 0.963204 -13 AACCAACAGGTTGGCCGGGGGCCCTGTTAGG 6 85 0 TTGGCGGGGG 0.941735 -72 CCGCGAGACGTTGACGCTCGGTGTGATCTTG 7 19 0 TTGAGCTCGG 0.751478 -97 CAACCCTCCTTGAAGCTCCGTCGCCAGGAC 8 10 1 TTGAGCTCCG 0.716587 -245 TCGGTTTGCGTGGGGCCGGTGGGTAGACGGC 8 155 0 TGGGCCGGTG 0.67601 -100 CGAAAACCTGTTGGAGCGCGGAAGGGGCGGC 14 27 1 TTGGGCGCGG 0.980552 -22 CGCTTGCATCTTGAGCCTCGGTGATGACAGA 18 23 1 TTGACCTCGG 0.893547 -46 TGTCCACGATTTGGTCCGCCGATATCGCGCC 19 57 1 TTGGCCGCCG 0.991529 -244 GCTGCATAGCTTGGCCCGCGGTGCGTGCGGG 19 139 1 TTGGCCGCGG 0.992909 -162 AGCCGATGGCTCGGGCGGCGGGAGCTTGCCG 24 61 0 TCGGCGGCGG 0.948279 -240 CCACGGCCGGACGGTCCGCGGACTGCGTTTC 25 148 0 ACGGCCGCGG 0.878238 -153 GCGGGCCGAATTGGGCCGTCGGACAGCCTTC 26 11 1 TTGGCCGTCG 0.910996 -80 ACGTTCTTCCTTGATCCGTGGTTAAGTCCAT 26 67 0 TTGACCGTGG 0.804136 -24 CTTCCTCCGACGGGCCGGCCGGGGCAATGGG 27 18 1 CGGGCGGCCG 0.938505 -89 GATTGGCAGGTTGGCGCGCCCCCACCGTAGG 27 65 1 TTGGGCGCCC 0.693275 -42 GATGAATTCTTGGACGCGCGGCTGGTGTC 29 9 0 TGGAGCGCGG 0.922528 -52 TAGAATTGCTCGGGTCGGGCGCTACTGGCCC 30 24 1 CGGGCGGGCG 0.831953 -49 GATGGAACCGCCGATGAGTCCCA 32 187 0 TGGACCGCCG 0.965151 -13 GCGAGAGGATTTGAACCTCCGGTCCCCTTGA 33 150 1 TTGACCTCCG 0.875336 -151 CCCGGACTCCCCGAGCCGCCGGAGGCCTAGC 33 252 1 CCGACCGCCG 0.847631 -49 GTCGCAAGAGTTGGCGGTCGGCTTTGCGTCG 34 61 1 TTGGGGTCGG 0.764612 -35 **** ****** Masking position 3 Map Score: 35.1971 Number of sites scoring better than the average of aligned sites = 8717 Number in coding regions = 8141 Number in noncoding regions = 576 Number of orfs with sites within 600 bp upstream = 427 Fraction of orfs with sites within 600 bp upstream = 0.0685834 Motif number 7 CAAGGTATGCCTGCAGCTGCAACTTCTATC 1 72 0 CTGCAGCTGC 0.873848 -22 GGGCCGGCGGGTTCCGCACCGAACACGGAC 5 75 0 GTTCCGCACC 0.552512 -111 GGCTGGTCGGCGGCGGCTCCCTCACCATAG 5 166 0 CGGCGGCTCC 0.93729 -20 CCCTGTTAGGGTGCCGGTACGGGACCTAGT 6 65 0 GTGCCGGTAC 0.683079 -92 GCGACGATGCGCGCCGCAGCGATACCTTGC 6 118 0 GCGCCGCAGC 0.788824 -39 GTGGTGTAATCGGCAGCACCTCTGATTTTG 8 62 0 CGGCAGCACC 0.946975 -193 CTTGTTGATGTGGCCGGACCGGATAAAGGG 8 190 1 TGGCCGGACC 0.951777 -65 CGCCCTAGAATGGCCGCATC 9 49 1 TGGCCGCATC 0.764219 -10 AAGACCGTCCGTGCAGCAGCTACGACGCAA 11 67 1 GTGCAGCAGC 0.762728 -30 GCCGGCTGGGGGCAGCACCCGCTCGCGGC 13 10 1 GGGCAGCACC 0.911447 -23 CGGCTCCTCTTTGCCGGTCCTTTCTACTGC 15 13 1 TTGCCGGTCC 0.905105 -87 CGCGCGCTGACGGTCGCTACCCTTCATGGA 17 16 1 CGGTCGCTAC 0.474517 -74 GCCTGCCGTTCCCTTCCCACTG 17 78 0 CTGCCGTTCC 0.715261 -12 TGGACGAGGACTGCAGCTGCATAGCTTGGC 19 124 1 CTGCAGCTGC 0.873848 -177 CACGTTGTACTGGCCGCAGCAATCCTTACG 19 265 0 TGGCCGCAGC 0.962422 -36 ATCAGTCCAGTTTCCGCTCCGCGACGATGC 21 101 1 TTTCCGCTCC 0.427355 -95 CGCGACGATGCGGGCGGTCCGAATAGCCTC 21 120 1 CGGGCGGTCC 0.829716 -76 GGTTTGTCAAGGGCCGGTGCACAATCGTCT 22 36 1 GGGCCGGTGC 0.975603 -23 ATGGCTCGGGCGGCGGGAGCTTGCCGAGGC 24 57 0 CGGCGGGAGC 0.875725 -244 CAGCGGCGACGTGCCGCAGCGGCGCATTCG 24 107 0 GTGCCGCAGC 0.952113 -194 GAGGCGGTCGCGGCCGGTGCTCGCCGGTTA 25 94 0 CGGCCGGTGC 0.987751 -207 CACCCACGGCCGGACGGTCCGCGGACTGCG 25 152 0 CGGACGGTCC 0.853234 -149 GTCGCCGCCCCGGCTGGTGCCATTTGCTCC 25 188 1 CGGCTGGTGC 0.762646 -113 CCTACTTAATGGGTCGCAGCCCCCCGGGGT 25 261 0 GGGTCGCAGC 0.768077 -40 CCCATTGCCCCGGCCGGCCCGTCGGAGGAA 27 19 0 CGGCCGGCCC 0.882692 -88 GCCCGCACCCTTGCCGGATCCTTGATGAAT 29 33 0 TTGCCGGATC 0.451606 -28 CGGACGCTCCTAACAAAGCA 31 38 0 CGGACGCTCC 0.893759 -10 GAGCCCCATTCGGCCGCTCTGGCACGCCTC 33 203 1 CGGCCGCTCT 0.802721 -98 ********** Masking position 6 Map Score: 35.9175 Number of sites scoring better than the average of aligned sites = 16104 Number in coding regions = 15084 Number in noncoding regions = 1020 Number of orfs with sites within 600 bp upstream = 688 Fraction of orfs with sites within 600 bp upstream = 0.110504 Motif number 8 TACCCGCCTCCTTGCCCCACCCCCGTTAGTCC 5 11 1 CTCCCCACCC 0.741384 -175 GAACACGGACGCGGCCTCAACCGATAGCATCG 5 53 0 GCCCTCAACC 0.870472 -133 GGTGAGGGAGCCGCCGCCGACCAGCC 5 170 1 CCCGCCGACC 0.98098 -16 CTAACAGGGCCCCCGGCCAACCTGTTGGTTGG 6 86 1 CCGGCCAACC 0.977404 -71 CGCAGCGATACCTTGCCCAACCAACAGGTTGG 6 102 0 CCGCCCAACC 0.954859 -55 GCTGCGGCGCGCATCGTCGCCCGGATAGGCTC 6 128 1 GCCGTCGCCC 0.900219 -29 ACCCACCGGCCCCACGCAAACCGATACCCTTG 8 162 1 CCCGCAAACC 0.903007 -93 CCTGGCGCGCGTCACCCGCGTCGGGTT 8 238 0 CGCGTCACCC 0.723837 -17 ATTGGGCCCGGCTTCCCCGCCCG 9 2 0 GCCCCCGCCC 0.964171 -57 AGCGGTCGGGGCCAGCCAACCCAAGACCGTCC 11 45 1 GCGCCAACCC 0.622905 -52 CTACGTGACCGCGCCGCCGCCC 15 88 1 GCCGCCGCCC 0.982018 -12 GCGCATGGGGGCACCCCCAGCCGCGAAGCGGC 16 49 0 GCCCCCAGCC 0.912358 -92 CGTTCCCTTCCCACTGTCACCCACACGCGCTC 17 62 0 CCTGTCACCC 0.892589 -28 CCGATATCGCGCCGTGTCACCCAGTGCCTCCT 19 75 1 GCTGTCACCC 0.847769 -226 TCGTCCACGCTCGTTGCCACCCGGAGGAGGCA 19 99 0 TCTGCCACCC 0.694655 -202 CTGCGGACAGCCGCCGCAAACCGCGTGATCAG 20 15 1 CCCGCAAACC 0.902996 -63 CGCGTGCCGAGCCGGGCCGACCGAATCACCTA 21 22 1 GCGGCCGACC 0.921423 -174 GATCACCCACGCGGCGCCACTCTCCTTGCTGA 21 151 0 GCCGCCACTC 0.805519 -45 TGTGCACCGGCCCTTGACAAACCCGCACGACT 22 27 0 CCTGACAAAC 0.241171 -32 TGAGGATCAACCAACCCCAACCGCGCCCTGAA 23 121 0 CCCCCCAACC 0.98418 -37 TGTCAGTTGACCACGCACACACTGCGCACCGC 24 135 1 CCGCACACAC 0.254638 -166 TTCCGGATCACCATCGACATCCATTCGACCGT 24 172 1 CCCGACATCC 0.694051 -129 ACGATCATCACCGCCGACGCCCTGTTAGCTGC 24 237 1 CCCGACGCCC 0.94117 -64 CGTTGTCTACGCGGCGACAACCGCGACATCAC 24 271 0 GCCGACAACC 0.943203 -30 AATCGTGAAACCTTTGCCAACCGTTTACTGGC 25 36 0 CCTGCCAACC 0.969296 -265 CTACGGTGGGGGCGCGCCAACCTGCCAATCCA 27 63 0 GGCGCCAACC 0.870678 -44 TCGGTATCCACCCGTCCCAGCCTACGGTGGGG 27 84 0 CCTCCCAGCC 0.792794 -23 GTGCCTGGTACCCACGACACCCGCCGACACGG 28 21 1 CCCGACACCC 0.975665 -34 CCACGGGCTACCTATGCCAACCTTGGACTGTG 32 115 1 CCTGCCAACC 0.969568 -85 TCGGACTGTCGCGGCGCCACCGGTGTGCGTGC 32 149 1 GCCGCCACCG 0.846816 -51 GCCGATGAGTCCCAGCCCAAGCACGCACACCG 32 169 0 CCGCCCAAGC 0.480934 -31 ** ******** Masking position 12 Map Score: 52.2007 Number of sites scoring better than the average of aligned sites = 10788 Number in coding regions = 10099 Number in noncoding regions = 689 Number of orfs with sites within 600 bp upstream = 525 Fraction of orfs with sites within 600 bp upstream = 0.0843238 Motif number 9 CTTTCTCGCGGCGAAAGTCGCACAGATGTC 4 32 1 GCGAAAGTCG 0.46918 -77 AACGGGGGTGGGGCAAGGAGGCGGGTA 5 8 0 GGGCAAGGAG 0.942816 -178 CTGGGGCTATGGTGAGGGAGCCGCCGCCGA 5 160 1 GGTGAGGGAG 0.584067 -26 AACGTCTCGCGGTCAGCGAGAAACGGCATT 7 38 1 GGTCAGCGAG 0.653143 -78 CGTTGACTGTGCTGACGGCGTTGACACCGT 8 120 0 GCTGACGGCG 0.705078 -135 ATAAAGGGCCGGATAAGGCGCCGGAAAACC 8 212 1 GGATAAGGCG 0.253443 -43 AGCAGCTACGACGCAAGGAGAACCCA 11 81 1 ACGCAAGGAG 0.406928 -16 TGCCTCAGCAGGGCCCGGAGGAAGCCTTGG 12 135 1 GGGCCCGGAG 0.762245 -78 GGCAGCACCCGCTCGCGGCGGA 13 21 1 GCTCGCGGCG 0.866444 -12 TCCCAGAGCAGCTCAAGTCGATATCTGACC 15 51 0 GCTCAAGTCG 0.920572 -49 GACTTGAGCTGCTCTGGGAGAATGGTCTAC 15 62 1 GCTCTGGGAG 0.69658 -38 GCGGCGGCGCGGTCACGTAGACCATTCTCC 15 78 0 GGTCACGTAG 0.77675 -22 GCGAAGCGGCGCGCAAGGAGTCGGGCAATC 16 29 0 GCGCAAGGAG 0.957231 -112 ACCAAATCGTGGACAACGCGCGTTGTCAAT 19 42 0 GGACAACGCG 0.55391 -259 GTGCGTGCGGGGGCAGGGAGTCCAATGAAA 19 159 1 GGGCAGGGAG 0.948911 -142 AGTACAACGTGTACAAGGAGTCGGGCT 19 284 1 GTACAAGGAG 0.399852 -17 GGTGTTTGTGGCACAAGTCGCATCAAACAC 20 48 0 GCACAAGTCG 0.822185 -30 GTCCCGCACAACGCGTGCCGAGCCG 21 6 1 GCACAACGCG 0.627639 -190 CGACTTGCCCGCTAACGGCGTGACGCAAGT 21 62 0 GCTAACGGCG 0.607161 -134 CGCCGTTAGCGGGCAAGTCGGGTACGTCCA 21 72 1 GGGCAAGTCG 0.914273 -124 CGTTTGGTTAGCGCAAGTCGTCGACGTGTT 23 93 1 GCGCAAGTCG 0.935389 -65 TCGTCGACGTGTTCAGGGCGCGGTTGGGGT 23 110 1 GTTCAGGGCG 0.777933 -48 TTATAGAATTGCTCGGGTCGGGCGCTACTG 30 21 1 GCTCGGGTCG 0.7699 -52 AGGCGTGACCGGGCCAGTAGCGCCCGACCC 30 35 0 GGGCCAGTAG 0.594778 -38 TCTGGTCGCCCCTCAGGGCGCCGCCACGGG 32 92 1 CCTCAGGGCG 0.630689 -108 CTGAAGACAAGCGCCCGTAGCTCAACGGAT 33 95 0 GCGCCCGTAG 0.601888 -206 GCCTCCGGCGGCTCGGGGAGTCCGGGTACT 33 248 0 GCTCGGGGAG 0.837995 -53 ACTAATGCACGGTCTGGTCGCAAGAGTTGG 34 45 1 GGTCTGGTCG 0.522433 -51 ********** Masking position 10 Map Score: 24.1205 Number of sites scoring better than the average of aligned sites = 11276 Number in coding regions = 10513 Number in noncoding regions = 763 Number of orfs with sites within 600 bp upstream = 562 Fraction of orfs with sites within 600 bp upstream = 0.0902666 Motif number 10 ACGACTGCCGGCAGGGTCAGGCGGTA 2 7 1 GCCGGCAGGG 0.965689 -30 GCGCCCCGGGGCCGGCGGGTTCCGCACCGA 5 83 0 GCCGGCGGGT 0.789997 -103 GCCCCGGGGCGCCGTTAGGGGATGGCCGCA 5 101 1 GCCGTTAGGG 0.525465 -85 GGCTGGTCGGCGGCGGCTCCCTCAC 5 171 0 GTCGGCGGCG 0.981179 -15 TAGGTCCCGTACCGGCACCCTAACAGGGCC 6 67 1 ACCGGCACCC 0.479193 -90 CAACAGGTTGGCCGGGGGCCCTGTTAGGGT 6 83 0 GCCGGGGGCC 0.768651 -74 TGCGGCGCGCATCGTCGCCCGGATAGGCTC 6 130 1 ATCGTCGCCC 0.389304 -27 TCAACGTCTCGCGGTCAGCGAGAAACGGCA 7 36 1 GCGGTCAGCG 0.463514 -80 TCGTGGTGTAATCGGCAGCACCTCTGATTT 8 64 0 ATCGGCAGCA 0.31457 -191 CGGTGTCAACGCCGTCAGCACAGTCAACGC 8 121 1 GCCGTCAGCA 0.526272 -134 TACGCTAACAGCGGTCGGGGCCAGCCAACC 11 36 1 GCGGTCGGGG 0.6948 -61 TGGCACATGCGTCGGCGTACACGGTCAATA 12 57 0 GTCGGCGTAC 0.202909 -156 GCCGGCTGGGGGCAGCACCC 13 1 1 GCCGGCTGGG 0.760667 -32 GGGCGGCGGCGCGGTCACGTA 15 89 0 GGCGGCGGCG 0.85406 -11 AGTCGTCAGGCTACAACCGAT 16 2 1 GTCGTCAGGC 0.871868 -139 GGCGTGCATCGTCGTCGGGCTACGCCCGGG 16 92 1 GTCGTCGGGC 0.947457 -49 AAGGGTAGCGACCGTCAGCGCGCGGTCCG 17 10 0 ACCGTCAGCG 0.801587 -80 GTGGGAAGGGAACGGCAGGC 17 80 1 AACGGCAGGC 0.271135 -10 ACGGCGCGATATCGGCGGACCAAATCGTGG 19 60 0 ATCGGCGGAC 0.744401 -241 CCGTCTGCGGACAGCCGCCGCA 20 3 1 GTCTGCGGAC 0.171723 -75 CTTGCGTCACGCCGTTAGCGGGCAAGTCGG 21 63 1 GCCGTTAGCG 0.541332 -133 GACCGCCCGCATCGTCGCGGAGCGGAAACT 21 109 0 ATCGTCGCGG 0.388396 -87 GTTAGCGCAAGTCGTCGACGTGTTCAGGGC 23 99 1 GTCGTCGACG 0.50074 -59 ATTCTCTTGTCGGCCGCCAGTGCCTGGG 24 9 1 GTCGGCCGCC 0.772586 -292 GGCGGTGATGATCGTCAGGCCAAGCAGCTG 24 222 0 ATCGTCAGGC 0.675394 -79 CTAACAGGGCGTCGGCGGTGATGATCGTCA 24 235 0 GTCGGCGGTG 0.721522 -66 GTGTGCGTGAGTTGGCGGGCATGGTAACCG 25 70 1 GTTGGCGGGC 0.518197 -231 GGGCATGGTAACCGGCGAGCACCGGCCGCG 25 86 1 ACCGGCGAGC 0.51794 -215 ACCGGCGAGCACCGGCCGCGACCGCCTCTG 25 96 1 ACCGGCCGCG 0.80115 -205 GCGAAACGCAGTCCGCGGACCGTCCGGCCG 25 146 1 GTCCGCGGAC 0.219251 -155 GCCGAATTGGGCCGTCGGACAGCCTTCTCA 26 15 1 GCCGTCGGAC 0.868182 -76 CCTCCGACGGGCCGGCCGGGGCAATGGGCA 27 21 1 GCCGGCCGGG 0.85657 -86 ATCCTGCCGTGTCGGCGGGTGTCGTGGGTA 28 29 0 GTCGGCGGGT 0.781905 -26 GTCAGCGACTACCGTAGGCGCCCATGGGAG 32 25 0 ACCGTAGGCG 0.347306 -175 AAGCACGCACACCGGTGGCGCCGCGACAGT 32 153 0 ACCGGTGGCG 0.701295 -47 TCCCCGAGCCGCCGGAGGCCTAGCGTACAC 33 259 1 GCCGGAGGCC 0.789575 -42 TCGGCTTTGCGTCGTTAGGGTTGTGAGC 34 78 1 GTCGTTAGGG 0.392412 -18 ********** Masking position 4 Map Score: 36.0486 Number of sites scoring better than the average of aligned sites = 47017 Number in coding regions = 44512 Number in noncoding regions = 2505 Number of orfs with sites within 600 bp upstream = 1073 Fraction of orfs with sites within 600 bp upstream = 0.172342 Motif number 11 GGAAGGTCACCCCAATTCGTAGC 4 96 0 AGGTCACCCC 0.815099 -13 TAGCCCCAGCCCGTCCCGCAGCCCCGCATT 5 139 0 CCGTCCCGCA 0.785089 -47 CTTCAAGACTAGGTCCCGTACCGGCACCCT 6 58 1 AGGTCCCGTA 0.597848 -99 GCACCCTAACAGGGCCCCCGGCCAACCTGT 6 81 1 AGGGCCCCCG 0.405524 -76 GGCGGTCGAGCCTATCCGGGCG 6 145 0 CGGTCGAGCC 0.762769 -12 AGACCGGAGCCGGTCACGGA 7 106 1 CGGTCACGGA 0.759376 -10 GCCCTTTATCCGGTCCGGCCACATCAACAA 8 191 0 CGGTCCGGCC 0.872641 -64 CGGGCGGGGAAGCCGGGCCCAATG 9 5 1 CGGGGAAGCC 0.445601 -54 TCTCCCTCGTAGGGCACCTATACCGGCTTC 10 65 0 AGGGCACCTA 0.489487 -23 AACAGCGGTCGGGGCCAGCCAACCCAAGAC 11 42 1 GGGGCCAGCC 0.850948 -55 TTGCCTCAGCAGGGCCCGGAGGAAGCCTTG 12 134 1 AGGGCCCGGA 0.580306 -79 GGCGGCGGCGCGGTCACGTAGACCATTCTC 15 79 0 CGGTCACGTA 0.865885 -21 GGCGCGCATGGGGGCACCCCCAGCCGCGAA 16 54 0 GGGGCACCCC 0.893925 -87 TCCCTTCCCACTGTCACCCACACGCGCTCG 17 61 0 CTGTCACCCA 0.354657 -29 ATTTGCACTTGCGTCACGCCGTTAGCGGGC 21 56 1 GCGTCACGCC 0.775101 -140 ACGCCGTTAGCGGGCAAGTCGGGTACGTCC 21 71 1 CGGGCAAGTC 0.82207 -125 CGCATTCGATCGGGCACGTAAGAAGCCGAT 24 85 0 CGGGCACGTA 0.924727 -216 ATGCGCCGCTGCGGCACGTCGCCGCTGTCA 24 110 1 GCGGCACGTC 0.659204 -191 CTTCCTCCGACGGGCCGGCCGGGGCAATGG 27 18 1 CGGGCCGGCC 0.92876 -89 GCCTACGGTGGGGGCGCGCCAACCTGCCAA 27 67 0 GGGGCGCGCC 0.903439 -40 GCTACTGGCCCGGTCACGCCTACGAGGGGA 30 44 1 CGGTCACGCC 0.982661 -29 CGAATCTCTTCGGGCGCGCTCTTTACTAGC 33 30 0 CGGGCGCGCT 0.817184 -271 TTTGAACCTCCGGTCCCCTTGAAGGGGGAC 33 159 1 CGGTCCCCTT 0.380086 -142 TTCGGCCGCTCTGGCACGCCTCCATGGACT 33 211 1 CTGGCACGCC 0.888367 -90 ********** Masking position 3 Map Score: 19.4437 Number of sites scoring better than the average of aligned sites = 14208 Number in coding regions = 13151 Number in noncoding regions = 1057 Number of orfs with sites within 600 bp upstream = 688 Fraction of orfs with sites within 600 bp upstream = 0.110504 Motif number 12 GAAAGGCTGTCCTAACCTACCGGTCG 4 6 0 CCTAACCTCC 0.983228 -103 GGAACCCCTGCATAACCTGCTCATCCTGACA 4 58 0 CATAACCTCT 0.907229 -51 GATGGACGTACCCGACTTGCCCGCTAACGGC 21 73 0 CCCGACTTCC 0.807318 -123 GTAAATGTAGCCTAACCTACTTAATGGGTCG 25 275 0 CCTAACCTCT 0.967573 -26 TCATTACCTTCCTCCGACGGGC 27 2 1 CATTACCTCC 0.799552 -105 GTGGGGGCGCGCCAACCTGCCAATCCATTGA 27 59 0 GCCAACCTCC 0.958313 -48 GCCCTGTAGGCTAACCTACCAAGCACTTGC 31 10 1 GCTAACCTCC 0.946966 -38 GATTCGAACTCCCAACCTTCTGATCCGTAGT 33 54 1 CCCAACCTCT 0.974629 -247 CCACGACCTCCTGTGTTTAGGT 34 2 1 CACGACCTCT 0.87699 -94 ******** ** Masking position 5 Map Score: 6.11391 Number of sites scoring better than the average of aligned sites = 276 Number in coding regions = 228 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 13 TCCCGCAGCCCCGCATTTCCCCTAATGCGG 5 126 0 CCGCATTTCC 0.72712 -60 TTACACCACGACGGATTGCACATCGATGTG 8 83 1 ACGGATTGCA 0.914546 -172 AGACGGCAAGCCGGATTGCTATGCAACTAG 12 22 1 CCGGATTGCT 0.970287 -191 CAGTAACCGAACGCATTGCCTCAGCAGGGC 12 119 1 ACGCATTGCC 0.95183 -94 TCAGGCTACAACCGATTGCCCGACTCCTTG 16 16 1 ACCGATTGCC 0.902378 -125 TTAACTAGATCAGGATTGCTTAGCTGTAGA 19 216 1 CAGGATTGCT 0.881923 -85 ATGACCACGTAAGGATTGCTGCGGCCAGTA 19 258 1 AAGGATTGCT 0.860823 -43 TCCATTGACGTCGGATTGCCCATTGCCCCG 27 37 0 TCGGATTGCC 0.944368 -70 ********** Masking position 5 Map Score: 2.80002 Number of sites scoring better than the average of aligned sites = 897 Number in coding regions = 828 Number in noncoding regions = 69 Number of orfs with sites within 600 bp upstream = 62 Fraction of orfs with sites within 600 bp upstream = 0.00995824 Motif number 14 ********** No masking Map Score: 6.49679e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 6.49679e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0