AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00410_mtub_reg_300.orf -o00410_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: glmS 21 glmS fadE21 25 fadE21 Input sequences: #1 PE_PGRS 277 PE_PGRS #2 Rv0110 147 hypothetical protein Rv0110 #3 Rv0111 180 hypothetical protein Rv0111 #4 gca 281 gca #5 gmhA 73 gmhA #6 fadE1 41 fadE1 #7 Rv0132c 86 hypothetical protein Rv0132c #8 Rv0144 101 hypothetical protein Rv0144 #9 Rv0145 88 hypothetical protein Rv0145 #10 Rv0146 42 hypothetical protein Rv0146 #11 Rv0147 94 hypothetical protein Rv0147 #12 fadE2 300 fadE2 #13 fadE3 56 fadE3 #14 Rv0218 92 hypothetical protein Rv0218 #15 Rv0221 43 hypothetical protein Rv0221 #16 echA1 30 echA1 #17 Rv0223c 98 hypothetical protein Rv0223c #18 Rv0224c 35 hypothetical protein Rv0224c #19 fadE4 94 fadE4 #20 fadE6 113 fadE6 #21 Rv0273c 96 hypothetical protein Rv0273c #22 end 194 end #23 lpqP 31 lpqP #24 fadE8 59 fadE8 #25 mmsA 205 mmsA #26 fadA 156 fadA #27 fadE10 260 fadE10 #28 echA6 26 echA6 #29 Rv0976c 197 hypothetical protein Rv0976c #30 echA9 186 echA9 #31 Rv1344 44 hypothetical protein Rv1344 #32 echA13 224 echA13 #33 echA14 300 echA14 #34 scoA 82 scoA #35 fadD35 115 fadD35 #36 gabT 166 gabT #37 Rv2595 108 hypothetical protein Rv2595 #38 Rv2597 216 hypothetical protein Rv2597 #39 Rv2600 81 hypothetical protein Rv2600 #40 echA15 52 echA15 #41 fadE20 135 fadE20 #42 dapF 24 dapF #43 Rv2728c 108 hypothetical protein Rv2728c #44 Rv2729c 66 hypothetical protein Rv2729c #45 ltp1 32 ltp1 #46 Rv2792c 201 hypothetical protein Rv2792c #47 Rv2795c 144 hypothetical protein Rv2795c #48 Rv2798c 130 hypothetical protein Rv2798c #49 echA16 46 echA16 #50 serB2 37 serB2 #51 ctaD 214 ctaD #52 Rv3137 300 hypothetical protein Rv3137 #53 fadE24 79 fadE24 #54 fadE25 24 fadE25 #55 lat 50 lat #56 Rv3291c_Rv3292 30 Rv3291c: hypothetical protein Rv3291c, Rv3292: hypothetical protein Rv3292 #57 aldB 26 aldB #58 Rv3371 191 hypothetical protein Rv3371 #59 otsB2 41 otsB2 #60 echA18 236 echA18 #61 gadB 37 gadB #62 Rv3435c 221 hypothetical protein Rv3435c #63 fadE26 214 fadE26 #64 fadE27 24 fadE27 #65 echA19 73 echA19 #66 Rv3545c 111 hypothetical protein Rv3545c #67 echA20 54 echA20 #68 fadE30_fadD3 47 fadE30: fadE30, fadD3: fadD3 #69 fadE34 271 fadE34 #70 Rv3603c 184 hypothetical protein Rv3603c #71 ftsH 66 ftsH #72 Rv3788 243 hypothetical protein Rv3788 #73 Rv3789 108 hypothetical protein Rv3789 #74 Rv3790 39 hypothetical protein Rv3790 #75 embA 85 embA #76 atsH 67 atsH #77 fadE35 79 fadE35 Motif number 1 TCCGCGTCGAGGTGGCGCACCACGCAGAGT 1 72 0 GGTGGCGCAC 0.732975 -206 GAGCGAGCCCGCCGCGGCCAACCCGCTGGT 1 105 0 GCCGCGGCCA 0.956406 -173 ACGTGCCCCGGAAGCCGCGCTACATTTGGC 1 214 1 GAAGCCGCGC 0.916567 -64 GCGTGTTGCATCCCGCCCAACGGCGCAG 2 9 1 CATCCCGCCC 0.895506 -139 ACTCCGATGAGCTGGCGCCACTCATCGCAC 2 48 0 GCTGGCGCCA 0.816893 -100 CGCCATCCCGGGCGCCGGACCTACGTCCGC 2 92 1 GGCGCCGGAC 0.927962 -56 ACCACTTCGTCGTCCGGCGCAGTGCTTGCT 3 116 0 CGTCCGGCGC 0.891887 -65 CGACGAAGTGGTCAGGGCGCGCTAACAGCG 3 134 1 GTCAGGGCGC 0.655141 -47 TTGCAGCGAGGCCGCGGCTCGTCAAACGGT 4 105 0 GCCGCGGCTC 0.851279 -177 CGCTCCCCGATCTGGCGCGCGCAACGAGGT 4 179 1 TCTGGCGCGC 0.55203 -103 CTCGACAAACCGCACCGGCCTGAGCATCAA 4 241 0 CGCACCGGCC 0.889307 -41 CTGACTCACCGTCGGCGCCACCGGTTAGCC 7 18 0 GTCGGCGCCA 0.822048 -69 TTCGGATCTCCTCGCCGCACAGCGGCGGTG 8 79 0 CTCGCCGCAC 0.8995 -23 CATCACTACGCTTCGGGGCCGCCGGTTAGG 9 17 0 CTTCGGGGCC 0.725749 -72 TGGTATCGCAGCTACGGCACCGAACTGTGG 12 48 0 GCTACGGCAC 0.547215 -253 GGCACGAAACGACGGCGAGCAGACGCAAAA 12 204 1 GACGGCGAGC 0.65601 -97 GCCACGATATCTACCGGCGCTAGCAGACGC 12 266 0 CTACCGGCGC 0.800551 -35 CGGCATCGTCGCCGGCGGTCATGGCGTCAC 17 51 0 GCCGGCGGTC 0.693331 -48 CGCCGGCGACGATGCCGAGCGCAGCGATGA 17 64 1 GATGCCGAGC 0.709936 -35 GCGATGAGGAGGAGCGGCGCAT 17 87 1 GGAGCGGCGC 0.94198 -12 GGTCGATAGCCTAGCGGGCCGTAGGGTGTG 18 12 1 CTAGCGGGCC 0.900345 -24 CAATCGGTGTCTTGCGGGGCCGCAGTGCAG 19 29 1 CTTGCGGGGC 0.904965 -66 AAGAATTGGCTCCCGAGCGGTTCGGTCA 19 77 0 GCTCCCGAGC 0.567109 -18 TCTCACCCATTTCGCCGGCCATCCGCTAGC 20 15 1 TTCGCCGGCC 0.833877 -99 GGAGCCAATGGGAGCCGCACG 21 2 0 GGAGCCGCAC 0.840017 -95 GGCTCCCCGGGACGGCGGCCTGGCCAAGCT 21 26 1 GACGGCGGCC 0.945413 -71 ACTACGCGCTGCTCCGGGGAAACGTATCCC 22 52 1 GCTCCGGGGA 0.571417 -143 GTATTCGTGGGCCCCGGCGCATAAAGTGTT 22 91 0 GCCCCGGCGC 0.855619 -104 CGTCCGGCCAGCCGCGGCACGGGATGCTGC 22 126 0 GCCGCGGCAC 0.961061 -69 CCTCGGATCACGTCCGGCCAGCCGCGGCAC 22 136 0 CGTCCGGCCA 0.609084 -59 AACGGTAGGTGCCGCGGGGCTTGAAG 23 7 0 GCCGCGGGGC 0.917324 -25 ACCCGCATCTGTTCCGGCGCTGCGCTCCAT 25 46 0 GTTCCGGCGC 0.915463 -160 ATCGGGATTCCCCGCCGCCACCGGCTTGCA 25 176 1 CCCGCCGCCA 0.948725 -30 GCAAGGTATCGCTGCGGCGCGCATCGTCGC 26 30 0 GCTGCGGCGC 0.979605 -127 CCCTAACAGGGCCCCCGGCCAACCTGTTGG 26 64 0 GCCCCCGGCC 0.5223 -93 ACTAGGTCCCGTACCGGCACCCTAACAGGG 26 83 0 GTACCGGCAC 0.606168 -74 AGAAACTGGAGACGCCGACCCGCGTTCGCG 27 63 0 GACGCCGACC 0.900432 -198 GAAAAACGGCGGCCCCGACCCTGCCTCAGC 27 106 1 GGCCCCGACC 0.511201 -155 GTCACCGGTGCTCGCCGCCAACGACGGCTG 27 140 0 CTCGCCGCCA 0.88805 -121 CGTGACTTTGGTAGCGGCCCGTCCGCAGTG 27 170 1 GTAGCGGCCC 0.951412 -91 CGCCGGGTGCTTTGCCGGCCCCAGGAGGTC 29 17 0 TTTGCCGGCC 0.675629 -181 TTCCTGAGTCGAAGCGGCCCGGTCTGCGCC 29 80 0 GAAGCGGCCC 0.917332 -118 GTAGGCCCGGGTTCCCGGCCAGCGTTGTCA 30 74 1 GTTCCCGGCC 0.765332 -113 AAACCTTAGCCCCCGCGGGCACCGCTGGGC 30 118 1 CCCCGCGGGC 0.894364 -69 CTTCAGGGGAGGCGAGGCCC 30 177 1 GGCGAGGCCC 0.811846 -10 CCCACGACGTTACCGCGCACTGCTCTAT 31 9 1 GTTACCGCGC 0.787046 -36 CGCGCCCGGGCGCCCAATAGAGC 31 32 0 GCCCGGGCGC 0.788491 -13 GCCACCGCAGCGCGCCGGGCATCCGACCGG 32 32 0 CGCGCCGGGC 0.977912 -193 GGCGCGCTGCGGTGGCGCCCTTTGCGTATA 32 46 1 GGTGGCGCCC 0.951854 -179 GGAAAAATTCCTCGACGGCCACCGTTAGAT 33 90 1 CTCGACGGCC 0.703881 -211 TTTCCACAGTGCCCCCGGCACGACTCGAAC 33 190 0 GCCCCCGGCA 0.708048 -111 CTCGTTATGGGTCGACGCCCAGAGTCGCCT 33 255 1 GTCGACGCCC 0.837446 -46 CTAGACGCACCGCGGGGGCAATGGTATTCT 34 16 1 CGCGGGGGCA 0.640947 -67 GCCAGGCCTACCCGCGGGCCGCGCACCTGG 36 46 1 CCCGCGGGCC 0.987908 -121 ATCGTCCCGACATCCCGCGCAGGACACGCC 37 59 1 CATCCCGCGC 0.848169 -50 GAGCTGGGGTGACCGCGGCCGAGACCTGCC 38 74 1 GACCGCGGCC 0.648341 -143 GACCTGCCGGGTTCCCGGCCGGACAACTCG 38 96 1 GTTCCCGGCC 0.765332 -121 TGTGACCCCCGGTCCCGCGAAAGCTGTTAC 38 131 1 GGTCCCGCGA 0.734773 -86 CCACGACCGCCACCCCGCACCTGCGTAACA 40 25 1 CACCCCGCAC 0.741792 -28 CGCCACGGCGAATTCGGTGCA 41 2 1 GCCACGGCGA 0.627746 -134 CGAGCGTAACGCCACGGCGAGCTTGCGTGC 41 29 0 GCCACGGCGA 0.627746 -107 TCGGCAGGTAGCCGGGGCGCGCCAGCCGCT 41 60 0 GCCGGGGCGC 0.973674 -76 GCCCCGGCTACCTGCCGACCAACCGCCCGG 41 72 1 CCTGCCGACC 0.895646 -64 CCCAACAATACCAACCGGGCGGTTGGTCGG 41 86 0 CCAACCGGGC 0.710964 -50 GGATGCCCTCCGGGGAAGAAAATTCT 41 120 0 CCTCCGGGGA 0.606952 -16 AAGCTAACGCCTTGGCGGGCGGATTCGGCC 43 83 0 CTTGGCGGGC 0.823825 -26 TATCAGTCAGCTTCCGGGCCGAATGTCGGT 44 35 1 CTTCCGGGCC 0.890424 -32 GGGGTGAGGAGGAGCCGGGCGATTCGGTTG 46 12 1 GGAGCCGGGC 0.953316 -190 CACCGTTGCCGTCCCGGACCGCATCCCCCT 46 59 0 GTCCCGGACC 0.520306 -143 CCACCCTAACGACCCGGCGAAGTGGGAACG 47 119 0 GACCCGGCGA 0.662807 -26 TGACTGTGACGACGCGGAGCCGAC 48 5 0 GACGCGGAGC 0.794255 -126 GGGCCCAACCGGTACGGCCCCA 50 3 0 GGTACGGCCC 0.826018 -35 CTCACCTTCAGATGGGGCCCAACCGGTACG 50 17 0 GATGGGGCCC 0.852971 -21 CCCGCCGGACAGCACGCGTT 51 1 1 CCCGCCGGAC 0.945481 -214 AACGCTTTCCGCCCGCGCGAATCGGGGTCG 51 55 0 GCCCGCGCGA 0.795507 -160 GCCAGACTCCGCCGGCGGGCCGTTGCAGAC 51 86 0 GCCGGCGGGC 0.941333 -129 TAGGACCAGGCCTGCCGCCAGCCTGATCGA 51 131 1 CCTGCCGCCA 0.884539 -84 CATCCAGCCCGGACCGGGCCAAAACCCAGT 51 181 0 GGACCGGGCC 0.802355 -34 GCGACCGGACGCAGGCGGCCAGCAGTATGT 52 35 0 GCAGGCGGCC 0.948995 -266 ACCGGAGTCAGCCCGCGACCGGACGCAGGC 52 49 0 GCCCGCGACC 0.494913 -252 GGAGATCTGGCCAGCGGCACGCTCCTGGTG 52 79 0 CCAGCGGCAC 0.778739 -222 GCCAGATCTCCCCGCGGGCCGCGCGGGATA 52 98 1 CCCGCGGGCC 0.987908 -203 CGCGGGATAAGCCGCGGAGCAAGAAATACC 52 119 1 GCCGCGGAGC 0.910104 -182 AACTCCCATCCCACCCGGCCATGGTAGGAC 52 182 1 CCACCCGGCC 0.947655 -119 GGAGCAACGGGCCGCCGAGCTGGGCGGAA 58 10 0 GCCGCCGAGC 0.949753 -182 GGTATAAGTGTCCGCCGGACCGCACCGGAA 58 141 0 TCCGCCGGAC 0.618718 -51 GACGCGGTGCCGCCGCGGGCGATACGCTCC 60 11 1 CGCCGCGGGC 0.831347 -226 GTCTGTCGCCGCCGCGGCCAGCATCTCCGG 60 85 0 GCCGCGGCCA 0.956406 -152 TCCCTGACCTGATGCCGCCCAAGTCTGTCG 60 107 0 GATGCCGCCC 0.964604 -130 GAGAACTCGAGACGCGGCACAGGTCGGCAC 60 216 1 GACGCGGCAC 0.857445 -21 GGTGCCGACCTGTGCCGCGT 60 227 0 GGTGCCGACC 0.892545 -10 CGGTACGGGACCTGGCGGCCCAAGACACTC 62 24 1 CCTGGCGGCC 0.943601 -198 ACGCGATCCACGTGGCGACCGCGGAGACGT 62 55 1 CGTGGCGACC 0.602126 -167 GTCAGCGGATGCCACCGCCAGGCCACGTGA 62 144 0 GCCACCGCCA 0.797129 -78 CCACTTGTGCGTTCCGGCCCGGAAATTGTA 62 190 0 GTTCCGGCCC 0.943949 -32 CTCGCTACCCGCCCACTTGTGCGT 62 208 0 CTACCCGCCC 0.903401 -14 CCCTGACCATCCCCCCGGTCGCTGCTAGTT 63 24 1 CCCCCCGGTC 0.688973 -191 ACGCCAACGGCAACCCGGCCGTCTTCCCGG 63 120 0 CAACCCGGCC 0.814964 -95 GTGGACGGCTGCTGACGGCCAGTGATAAAG 63 166 1 GCTGACGGCC 0.805242 -49 CAAGCTCACACCCGACGGGCAGAAAGAGGT 65 38 1 CCCGACGGGC 0.783271 -36 GGCAGAAAGAGGTGGCGGCCGTGGCAACC 65 55 1 GGTGGCGGCC 0.937203 -19 CTGACGACATGTAGCGGGCAGCTCCTCTTC 69 64 1 GTAGCGGGCA 0.66687 -208 CGTTTGCAAACGAACCGCCCGGAAGAGGAG 69 85 0 CGAACCGCCC 0.712338 -187 CACCCTGGCACAAGCGGCGCCG 70 3 0 CAAGCGGCGC 0.800632 -182 GTGCCAGGGTGTACCCGCCCGATTGCCGCC 70 22 1 GTACCCGCCC 0.943937 -163 CCGCCCGATTGCCGCCGGCAACCGACACTG 70 36 1 GCCGCCGGCA 0.964392 -149 CGTCAAGACCCACCCGGGGCACTGCTGATT 70 81 0 CACCCGGGGC 0.876296 -104 TGACCGTCCGGTACCCGGGCATGGGACTGG 70 133 1 GTACCCGGGC 0.88851 -52 AGCAGACGGCCTCACAGGTTT 70 174 0 GCAGACGGCC 0.718866 -11 GATCATCGGCCGTGCCGGCCAGGTCCTTCC 71 46 0 CGTGCCGGCC 0.965775 -21 GTTGGCGGCCGGACCGGGCCGAAGATGGAT 72 13 0 GGACCGGGCC 0.802355 -231 ACAGCGGAGCGTTGGCGGCCGGACCGGGCC 72 23 0 GTTGGCGGCC 0.927416 -221 CCGCCGACCTTTCGCGGCGCTTCGGTGACT 72 222 0 TTCGCGGCGC 0.722104 -22 GCCGCGAAAGGTCGGCGGAC 72 234 1 GTCGGCGGAC 0.809339 -10 CCGCACCAGGCTCGCCGCCCCCATTAGACT 73 19 1 CTCGCCGCCC 0.984729 -90 ATCGGAGTCTGGTGCCGCGCCGCCACGCCA 73 64 1 GGTGCCGCGC 0.975512 -45 GTCAAAGAGGGTACCCGCCCGATTCGACCC 74 19 0 GTACCCGCCC 0.943937 -21 CGAGTCGGTGGCCACGGCACTT 75 3 0 GCCACGGCAC 0.744745 -83 GGCGACAACCTCCGCGGCCCCGCATCCTCA 75 32 1 TCCGCGGCCC 0.90288 -54 GCCCCGCATCCTCACCGCCCTTAACCGCGT 75 48 1 CTCACCGCCC 0.883759 -38 TCCGTTAGCGGTAGCGCCCCGTTCGACGA 77 10 1 GGTAGCGCCC 0.699855 -70 ********** Masking position 7 Map Score: 142.973 Number of sites scoring better than the average of aligned sites = 72235 Number in coding regions = 67316 Number in noncoding regions = 4919 Number of orfs with sites within 600 bp upstream = 1522 Fraction of orfs with sites within 600 bp upstream = 0.244459 Motif number 2 CCGCTGGTGCCTCCGCGTCGAGGTGGCGCACCAC 1 79 0 CGCGTCGAGT 0.701035 -199 ACCCAAGAGCGAGCCCGCCGCGGCCAACCCGCTG 1 107 0 GCCGCCGCGC 0.972743 -171 ATTGTGACCAGCTGCCGGAGCGGGAATGCGTGTT 1 152 1 GCCGGAGCGG 0.923381 -126 ATGTAGCGCGGCTTCCGGGGCACGTTGCGCCAAT 1 205 0 GCCGGGGCCG 0.954368 -73 TTGCATCCCGCCCAACGGCGCAGGCAACAATGGT 2 16 1 CACGGCGCGG 0.822387 -132 GCAGGTGGGCGACTCCGATGAGCTGGCGCCACTC 2 55 0 GCCGATGACT 0.616272 -93 TGTCTTCGGGGAATCCGACGCGGTCACATCTAAA 3 44 1 GCCGACGCGT 0.801066 -137 TGCTTGCTGCCGATACGTCGCTGCCCCTCCTCTT 3 90 0 CACGTCGCGC 0.735221 -91 CAATTCCAGGGTTACCGTCGCGCTCATCCGGAGC 4 21 0 GCCGTCGCCT 0.932464 -261 TGTTTGCAGCGAGGCCGCGGCTCGTCAAACGGTT 4 104 0 GCCGCGGCCG 0.904189 -178 TTGCGCGCGCCAGATCGGGGAGCGCCCTCGTTGT 4 169 0 CTCGGGGACG 0.799228 -113 GGATAGTGCGCACCTCGTTGCGCGCGCCAGATCG 4 186 0 CTCGTTGCCG 0.868625 -96 CCTTGATGCTCAGGCCGGTGCGGTTTGTCGAGAA 4 239 1 CCCGGTGCGT 0.900782 -43 CAGGCTAACCGGTGGCGCCGACGGTGAGTCAGGA 7 16 1 GGCGCCGAGG 0.912699 -71 GCACTACCCGCGTCGCGCTGCAGCACACCTTCGA 7 57 0 CGCGCTGCGC 0.899539 -30 CACATCACTACGCTTCGGGGCCGCCGGTTAGGTC 9 15 0 CTCGGGGCGC 0.864541 -74 GGATTCGGCGATCGGCACGTCGTT 12 1 1 GTCGGCGACG 0.91921 -300 CGGCGATCGGCACGTCGTTGATGCTGGCTTCGCC 12 16 1 CTCGTTGAGC 0.741143 -285 GCCACAGTTCGGTGCCGTAGCTGCGATACCACTG 12 47 1 GCCGTAGCGC 0.878452 -254 TGCGATACCACTGGCCGTTGCGGTCACGGGATTC 12 68 1 CCCGTTGCGT 0.852804 -233 ACGACAACCGCATTGCGATGCGGTTCCAGTACGA 12 100 0 CGCGATGCGT 0.50256 -201 TCGCAATGCGGTTGTCGTGGAAGCTCCACAAACT 12 116 1 GTCGTGGAGC 0.75284 -185 CGCTGCGCTCGGCATCGTCGCCGGCGGTCATGGC 17 56 0 GTCGTCGCGG 0.925333 -43 GCCGCTCCTCCTCATCGCTGCGCTCGGCATCGTC 17 71 0 CTCGCTGCCT 0.722802 -28 TAGCGTCACCCTCGTCGTTGACCGAACCGCTCGG 19 59 1 CTCGTTGACG 0.774543 -36 GCCAGGCCGCCGTCCCGGGGAGCCAATGGGAGCC 21 16 0 CCCGGGGACC 0.911825 -81 CGAGCGCTGACTACGCGCTGCTCCGGGGAAACGT 22 43 1 CGCGCTGCCC 0.909882 -152 TCACGTCCGGCCAGCCGCGGCACGGGATGCTGCC 22 125 0 CCCGCGGCCG 0.499789 -70 CGCTGCGGCGCGCATCGTCGCCCGGATAGGCTCG 26 17 0 CTCGTCGCCG 0.906653 -140 GGTTGGGCAAGGTATCGCTGCGGCGCGCATCGTC 26 32 0 GTCGCTGCGC 0.897624 -125 CTCCCGCAGGGTCTTCGTTGACCGATCGGCTGTT 27 18 1 GTCGTTGACG 0.831725 -243 AATAGAAACTGGAGACGCCGACCCGCGTTCGCGC 27 62 0 GACGCCGACC 0.721264 -199 CCGACCCTGCCTCAGCGTCGCAGCCGTCGTTGGC 27 120 1 CGCGTCGCGC 0.92244 -141 CAAAGTCACGGTCACCGGTGCTCGCCGCCAACGA 27 146 0 GCCGGTGCCG 0.976361 -115 TTCGTGATTCGTCAGCGAGGAGGCGGCG 27 243 1 GGCGAGGAGC 0.595429 -18 TACTCCAATGGACGGCGCAGACCGGGCCGCTTCG 29 67 1 GGCGCAGACG 0.725629 -131 TTCCTCCCTTGGGATCGGCGACGCTACCAACCAA 29 150 0 GTCGGCGAGC 0.904602 -48 GGGCCTACTACTGATCGTTGAGCGGATGTTCGCA 30 48 0 CTCGTTGACG 0.774543 -139 TCGTGGCTCGCCCAGCGGTGCCCGCGGGGGCTAA 30 123 0 CGCGGTGCCG 0.938359 -64 CGCAAAGGGCGCCACCGCAGCGCGCCGGGCATCC 32 38 0 GCCGCAGCCG 0.905544 -187 GAAGGCGACTCTGGGCGTCGACCCATAACGAGGC 33 253 0 CGCGTCGACC 0.874498 -48 AGCATGAGTCGTGTACGGAGACCGTC 35 3 0 GACGGAGACG 0.466631 -113 GAAACCGTTGCCGTTGAGTGTGTT 38 1 1 GCCGTTGCGT 0.892881 -216 GCACCATCCGGGTGTCGGTGAGCGTGCAACTCAA 38 34 0 GTCGGTGACG 0.885652 -183 CATACCCTCTCGTACCGCTGCGCCGCGGTTGGTC 38 192 0 CCCGCTGCCC 0.949905 -25 GTGCGGGGTGGCGGTCGTGGCAGCATTGAGTTCG 40 11 0 GTCGTGGCGC 0.854195 -42 CGCCACGGCGAATTCGGTGCACGCAAGCTCGCC 41 10 1 GTCGGTGCCG 0.937133 -126 GCGAGCGTAACGCCACGGCGAGCTTGCGTGCACC 41 26 0 CACGGCGACT 0.4917 -110 TGGTCGGCAGGTAGCCGGGGCGCGCCAGCCGCTG 41 59 0 GCCGGGGCCG 0.968162 -77 CGGTCTCTTTGCAGCCGTTGCTCCACGAGGCCGA 43 55 1 GCCGTTGCCC 0.961105 -54 AGCCCAGTGTGCCACCGTTGCCGTCCCGGACCGC 46 67 0 GCCGTTGCGT 0.892881 -135 GGGCTACACGGCCTACGTCGCACGGCGATGGGCC 46 96 1 GACGTCGCCG 0.827392 -106 TGCGTCTGCTCACGCCGTAGCGGTTGGTCGAACT 47 75 1 CCCGTAGCGT 0.656094 -70 ACCACCCTAACGACCCGGCGAAGTGGGAACGAAA 47 116 0 CCCGGCGAGT 0.873891 -29 GTTTGACTGTGACGACGCGGAGCCGAC 48 4 0 GACGCGGACC 0.565676 -127 TTCTGCGGTAGTTCCCGCTGACGCATAATGTGAT 48 78 1 GCCGCTGAGC 0.926596 -53 CTGGCCGAGTGCTACCGTCGAACGCGTGCTGTCC 51 17 0 GCCGTCGACG 0.952648 -198 TAGCACTCGGCCAGCCGTCGACCCCGATTCGCGC 51 37 1 CCCGTCGACC 0.92919 -178 CCAGTGATGATCCCGGCGATGGTGACATACTG 52 9 1 GCCGGCGAGG 0.965468 -292 GGTGCACCATCCTTTCGCCGAGCGTGTACCCAGT 52 276 0 CTCGCCGACG 0.848027 -25 GGTCCGCTATCACCCCGATGACCGAGGCTGCCGT 53 56 1 CCCGATGACG 0.757895 -24 CCCAGCTCGGCGGCCCGTTGCTCCACCCCACATT 58 16 1 CCCGTTGCCC 0.945104 -176 TGGGCCTTCTGCTTCCGGTGCGGTCCGGCGGACA 58 129 1 GCCGGTGCGT 0.928886 -63 CGCCATCTCCGTCGGCGTTGACCCCCGTGAGAGG 59 11 1 GGCGTTGACC 0.872195 -31 GACGCGGTGCCGCCGCGGGCGATACGCTC 60 6 1 GCCGCCGCGG 0.944929 -231 CATGGCCGTCCTCCTCGTTGACGGTCGGAGCGTA 60 33 0 CTCGTTGAGG 0.752887 -204 TTGCATTGGTGAACCCGGAGATGCTGGCCGCGGC 60 71 1 GCCGGAGAGC 0.854854 -166 GCCCAAGTCTGTCGCCGCCGCGGCCAGCATCTCC 60 87 0 GCCGCCGCGC 0.97255 -150 GACGCGCATAGGCGGCGCTGATCCCTGACCTGAT 60 124 0 GGCGCTGACC 0.882915 -113 TATGCGCGTCCTCTGCGGTGACCTGGCTGGTAGC 60 148 1 CGCGGTGACT 0.738254 -89 TCCACGTGGCGACCGCGGAGACGTTGGGTGCGGA 62 61 1 GGCGGAGAGT 0.542341 -161 CCTGGCGGTGGCATCCGCTGACGGAGGGGTCCCG 62 152 1 GCCGCTGAGG 0.917334 -70 AATGCCTTTTGTCTGCGGTGAAGGCATGTTTTAC 66 60 1 GGCGGTGAGG 0.909847 -52 CACCAGTAGCGCTCCCGACGCACCACCTCGCGCG 69 20 0 GCCGACGCCC 0.922875 -252 ACGTCAAGACCCACCCGGGGCACTGCTGATTTGG 70 78 0 CCCGGGGCCT 0.883311 -107 GCGGCCGGACCGGGCCGAAGATGGATCC 72 5 0 CCCGAAGAGG 0.477546 -239 ACGATAAATCGGATTCGTGGCGCTTCAGTGTTAC 72 114 0 GTCGTGGCCT 0.714958 -130 CGACAACGCAGTCACCGAAGCGCCGCGAAAGGTC 72 213 1 GCCGAAGCCC 0.728429 -31 GAAGTCTAATGGGGGCGGCGAGCCTGGTGCGGTG 73 17 0 GGCGGCGACC 0.940154 -92 CAGGTGTTGGCGTGGCGGCGCGGCACCAGACTCC 73 67 0 CGCGGCGCGC 0.949076 -42 AGGGCGGTGAGGATGCGGGGCCGCGGAGGTTGTC 75 35 0 GGCGGGGCGC 0.93097 -51 AGGCTCGATGGTAGGCGACGCGGTTAAGGGCGGT 75 61 0 GGCGACGCGT 0.681045 -25 GCTCTAGGCAGCGATCGTCGAACGGGGCGCTACC 77 20 0 GTCGTCGACG 0.878945 -60 * ******* ** Masking position 7 Map Score: 127.75 Number of sites scoring better than the average of aligned sites = 46421 Number in coding regions = 43853 Number in noncoding regions = 2568 Number of orfs with sites within 600 bp upstream = 1178 Fraction of orfs with sites within 600 bp upstream = 0.189207 Motif number 3 TACTGTGTTTCGCGTGGAGTCAAACGGAAAT 1 17 0 CGCGGGAGTC 0.671251 -261 CGCGGCCAACCCGCTGGTGCCTCCGCGTCGA 1 92 0 CCGCGGTGCC 0.962622 -186 TTGTGACCAGCTGCCGGAGCGGGAATGCGTG 1 153 1 CTGCGGAGCG 0.658434 -125 ATCCCGCCCAACGGCGCAGGCAACAATGGTG 2 20 1 ACGGGCAGGC 0.609441 -128 GGTGCAGCGGACGTAGGTCCGGCGCCCGGGA 2 97 0 ACGTGGTCCG 0.551894 -51 CCGATCACATCGGGTGCAGCGGACGTAGGTC 2 109 0 CGGGGCAGCG 0.93349 -39 TGCTGCCGATACGTCGCTGCCCCTCCTCTTG 3 89 0 ACGTGCTGCC 0.691382 -92 ACTTCGTCGTCCGGCGCAGTGCTTGCTGCCG 3 112 0 CCGGGCAGTG 0.672583 -69 TCGCGCTCATCCGGAGCACACGGCGGA 4 7 0 CCGGGCACAC 0.741422 -275 TTACACAACGAGGGCGCTCCCCGATCTGGCG 4 165 1 AGGGGCTCCC 0.834755 -117 CTTGATGCTCAGGCCGGTGCGGTTTGTCGAG 4 240 1 AGGCGGTGCG 0.886421 -42 ACCGGTGGCGCCGACGGTGAGTCAGGATGCA 7 23 1 CCGAGGTGAG 0.751521 -64 CCGCGTCGCGCTGCAGCACACCTTCGAGAGT 7 53 0 CTGCGCACAC 0.298359 -34 TACGCGATCACCGCCGCTGTGCGGCGAGGAG 8 71 1 CCGCGCTGTG 0.760112 -31 CGAGAACCAGAGGGAGCACAGGATGAGCGCC 10 22 1 AGGGGCACAG 0.464931 -21 CAGTTCGGTGCCGTAGCTGCGATACCACTGG 12 51 1 CCGTGCTGCG 0.861386 -250 AATAGTCGAGCTCGCGCTGCCACTTGCGGGT 12 161 1 CTCGGCTGCC 0.641671 -140 TATCTACCGGCGCTAGCAGACGCATAAGTCC 12 258 0 CGCTGCAGAC 0.515151 -43 CCCTATGAGTAGGGGGCTGCG 15 33 1 AGGGGCTGCG 0.877359 -11 TCGGTCAACGACGAGGGTGACGCTACTGCAC 19 53 0 ACGAGGTGAC 0.521866 -42 AGCTAACAACCGGTGGGTCGGTTATTAACGT 20 47 0 CGGTGGTCGG 0.719938 -67 AGGCCGCCGTCCCGGGGAGCCAATGGGAGCC 21 16 0 CCCGGGAGCC 0.878838 -81 GTTTTGTTCCAGGGAGGTGCCCAG 21 83 1 AGGGGGTGCC 0.921888 -14 GTGAAATTTGCTGCTGGTGCGGAGGATTAGG 22 13 0 CTGCGGTGCG 0.777826 -182 ATACGTTTCCCCGGAGCAGCGCGTAGTCAGC 22 48 0 CCGGGCAGCG 0.910074 -147 GCATCCCGTGCCGCGGCTGGCCGGACGTGAT 22 129 1 CCGCGCTGGC 0.895572 -66 CGGACGTGATCCGAGGGTGTGGGTCTCACCA 22 150 1 CCGAGGTGTG 0.605004 -45 AAGTCAACGGTAGGTGCCGCGGGGCTTG 23 14 0 CGGTGGTGCC 0.93429 -18 CGCATCTGTTCCGGCGCTGCGCTCCATCATG 25 42 0 CCGGGCTGCG 0.948389 -164 GTCTCCCGCTAGGACGCTGTCGGCTCGGTCG 25 105 1 AGGAGCTGTC 0.373509 -101 GAAGACCCTGCGGGAGGACAGCG 27 3 0 CGGGGGACAG 0.799056 -258 GTTAGCGCGAACGCGGGTCGGCGTCTCCAGT 27 58 1 ACGCGGTCGG 0.569572 -203 GTCACGGTCACCGGTGCTCGCCGCCAACGAC 27 145 0 CCGGGCTCGC 0.847353 -116 GTGATTCGTCAGCGAGGAGGCGGCG 27 246 1 AGCGGGAGGC 0.547013 -15 ACTCCAATGGACGGCGCAGACCGGGCCGCTT 29 68 1 ACGGGCAGAC 0.594123 -130 CCTTAGCCCCCGCGGGCACCGCTGGGCGAGC 30 121 1 CGCGGCACCG 0.770165 -66 CGCATCGCCTCCGTAGCTCAGGTGGATAGAG 33 131 1 CCGTGCTCAG 0.578201 -170 GCCTTCTAATCCCTAGGTCGCACGTTCGAGT 33 167 1 CCCTGGTCGC 0.511561 -134 CGAGTCGTGCCGGGGGCACTGTGGAAATAGC 33 193 1 CGGGGCACTG 0.610321 -108 ATAGCAGGTCAGCATGGTGGCGTGGCTTGAC 33 219 1 AGCAGGTGGC 0.412118 -82 AACTCAAACCACGGAGGTGCCCG 33 288 1 ACGGGGTGCC 0.894848 -13 TACCATTGCCCCCGCGGTGCGTCTAGGGACC 34 11 0 CCCGGGTGCG 0.911139 -72 GGTTCCTCCGCCTGGTGCCTACCGCATGT 35 97 0 CGCCGGTGCC 0.939455 -19 TGGTATTGCGATCACGGTGCCAGGCCTACCC 36 28 1 ATCAGGTGCC 0.171054 -139 TGAACCGGCGAGCCGGGTGAGGAGGATCT 36 148 1 AGCCGGTGAG 0.576342 -19 CGCACGCTCCCTCAGCCATTT 37 1 1 CGCAGCTCCC 0.714204 -108 GCCGCGGTCACCCCAGCTCACTGGTGCACCA 38 62 0 CCCCGCTCAC 0.657704 -155 GCCGGGAACCCGGCAGGTCTCGGCCGCGGTC 38 84 0 CGGCGGTCTC 0.799423 -133 TTTCGCGGGACCGGGGGTCACAACGGGCGAG 38 122 0 CCGGGGTCAC 0.869934 -95 GTCATGTATTAGGCCGGAGTCGATTTCGGGA 39 32 1 AGGCGGAGTC 0.528386 -50 CGGGGTAAGGCTGATGGTCCCGAAATCGACT 39 49 0 CTGAGGTCCC 0.481973 -33 GGTCGATGTTACGCAGGTGCGGGGTGGCGGT 40 30 0 ACGCGGTGCG 0.849112 -23 ATTCGGTGCACGCAAGCTCGCCGTGGCGTTA 41 22 1 CGCAGCTCGC 0.516696 -114 CGTGGCGTTACGCTCGCAGCGGCTGGCGCGC 41 43 1 CGCTGCAGCG 0.669906 -93 ACCAACCGGGCGGTTGGTCGGCAGGTAGCCG 41 76 0 CGGTGGTCGG 0.722443 -60 CTGCAAAGAGACCGTGCTGAGAGGCCGACAC 43 38 0 ACCGGCTGAG 0.473452 -71 ACATTCGGCCCGGAAGCTGACTGATACATCT 44 30 0 CGGAGCTGAC 0.807655 -37 CCGGGCGATTCGGTTGGAGCCTGGCCTCAAT 46 26 1 CGGTGGAGCC 0.886738 -176 GGGACGGCAACGGTGGCACACTGGGCTACAC 46 74 1 CGGTGCACAC 0.573478 -128 TGGGCCCCATCTGAAGGTGAGC 50 26 1 CTGAGGTGAG 0.345832 -12 TACCGTCGAACGCGTGCTGTCCGGCGGG 51 8 0 CGCGGCTGTC 0.742733 -207 ACGCGTTCGACGGTAGCACTCGGCCAGCCGT 51 24 1 CGGTGCACTC 0.404831 -191 CGCCGGCGGGCCGTTGCAGACCAACGCTTTC 51 76 0 CCGTGCAGAC 0.638137 -139 CAACGGCCCGCCGGCGGAGTCTGGCATTTAC 51 91 1 CCGGGGAGTC 0.772154 -124 CCAAACATCCAGCCCGGACCGGGCCAAAACC 51 185 0 AGCCGGACCG 0.506511 -30 AGCCCGCGACCGGACGCAGGCGGCCAGCAGT 52 39 0 CGGAGCAGGC 0.71137 -262 TGCGTCCGGTCGCGGGCTGACTCCGGTCACC 52 52 1 CGCGGCTGAC 0.850897 -249 CAGCGGCACGCTCCTGGTGACCGGAGTCAGC 52 67 0 CTCCGGTGAC 0.439409 -234 CAAGAAATACCGCTAGGACCGCGATCAGTAT 52 138 1 CGCTGGACCG 0.592781 -163 GGAGTAAGATAGGGTGGTCCGCTATCACCCC 53 41 1 AGGGGGTCCG 0.834755 -39 ACCCCGATGACCGAGGCTGCCGT 53 67 1 CCGAGCTGCC 0.882983 -13 GTATAAGTGTCCGCCGGACCGCACCGGAAGC 58 139 0 CCGCGGACCG 0.85853 -53 GGGTCGCAAAACGACGGTGGGGACTTGTC 58 173 1 ACGAGGTGGG 0.475301 -19 GTATCGCCCGCGGCGGCACCGCGTC 60 5 0 CGGCGCACCG 0.867574 -232 TCCTCGTTGACGGTCGGAGCGTATCGCCCGC 60 25 0 CGGTGGAGCG 0.856609 -212 CTAAGCTACCAGCCAGGTCACCGCAGAGGAC 60 155 0 AGCCGGTCAC 0.489958 -82 TTATCGACACCGGGTGCTGCCAGAGAACTCG 60 194 1 CGGGGCTGCC 0.970361 -43 TCGAGGTGGCTCACGGTACGGGAC 62 4 1 AGGTGCTCAC 0.406644 -218 TGTCTTGGGCCGCCAGGTCCCGTACCGTGAG 62 20 0 CGCCGGTCCC 0.895073 -202 CCACGTGGCGACCGCGGAGACGTTGGGTGCG 62 62 1 ACCGGGAGAC 0.449585 -160 ATCACGTGGCCTGGCGGTGGCATCCGCTGAC 62 143 1 CTGGGGTGGC 0.693672 -79 GAAATTGTAACCGCGGGACCCCTCCGTCAGC 62 168 0 CCGCGGACCC 0.886313 -54 GGTCAGGGTAAGGAGGGTGCC 63 1 0 AGGAGGTGCC 0.790472 -214 CCTGACCATCCCCCCGGTCGCTGCTAGTTCC 63 25 1 CCCCGGTCGC 0.724585 -190 AGCTAGTGGACGGCTGCTGACGGCCAGTGAT 63 161 1 CGGCGCTGAC 0.917743 -54 ATTCAATCGGAGGCAGCTGAG 63 204 1 AGGCGCTGAG 0.709129 -11 GGTAGCGAACCCGCAGGAGTGCA 67 42 1 CCGCGGAGTG 0.691453 -13 GCAAACGATACGCATGCTGTGTGTAGATTTC 69 108 1 CGCAGCTGTG 0.418094 -164 TCTCGGCTGTCGGGAGGTGGGAAATCTACAC 69 128 0 CGGGGGTGGG 0.933347 -144 ATCAGCAGTGCCCCGGGTGGGTCTTGACGTG 70 82 1 CCCCGGTGGG 0.788385 -103 GCCCGGGTACCGGACGGTCACCAAGACTGTA 70 122 0 CGGAGGTCAC 0.747793 -63 GGAGCGTTGGCGGCCGGACCGGGCCGAAGAT 72 17 0 CGGCGGACCG 0.893764 -227 TAATAGCGTGCTGTGGGTGCCGTTTCACCGA 72 158 0 CTGTGGTGCC 0.641591 -86 AACAGCTATCCGGGCGCAGGCGACAACGCAG 72 193 1 CGGGGCAGGC 0.885197 -51 GGGGGCGGCGAGCCTGGTGCGGTGTGCGAA 73 10 0 AGCCGGTGCG 0.772238 -99 GACGCGGTTAAGGGCGGTGAGGATGCGGGGC 75 48 0 AGGGGGTGAG 0.786634 -38 **** ****** Masking position 6 Map Score: 106.035 Number of sites scoring better than the average of aligned sites = 53564 Number in coding regions = 50386 Number in noncoding regions = 3178 Number of orfs with sites within 600 bp upstream = 1351 Fraction of orfs with sites within 600 bp upstream = 0.216993 Motif number 4 TGGAGTCAAACGGAAATCCGGAT 1 3 0 CGGAAACCGG 0.761992 -275 AGCCCGCCGCGGCCAACCCGCTGGTGCCTCC 1 99 0 GGCCAACCGC 0.722683 -179 ACCCAAGAGCGAGCCCGCCGCGGCCAACCCG 1 110 0 GAGCCCCCGC 0.742585 -168 CTGTCCAACACGCATTCCCGCTCCGGCAGCT 1 161 0 CGCATTCCGC 0.391843 -117 GTTGGACAGCCGAATCCCCGCAATTGGCGCA 1 183 1 CGAATCCCGC 0.870638 -95 TGAGCTGGCGCCACTCATCGCACCATTGTTG 2 40 0 CCACTCTCGC 0.440008 -108 CACATCAAAACCGATAGCCGCTTGTCTTCGC 3 12 1 CCGATACCGC 0.829338 -169 TCGCCTTTCTCGACAAACCGCACCGGCCTGA 4 248 0 CGACAACCGC 0.936832 -34 CGGGCTGCACTACCCGCGTCGCGCTGC 7 70 0 GCACTACCGC 0.724109 -17 CTGGACGTACGCGATCACCGCCGCTGTGCGG 8 64 1 GCGATCCCGC 0.551658 -38 AGCGCGAGCTCGACTATTCGCTACGCAAGAG 12 148 0 CGACTATCGC 0.746466 -153 GATCCTCGTTCGACTAACCGCAGCCTGCCAA 14 58 0 CGACTACCGC 0.960612 -35 CACGAAACACCGGACGAGTATGA 16 3 1 CGAAACCCGG 0.598657 -28 CCCATTTCGCCGGCCATCCGCTAGCCAACGT 20 20 1 CGGCCACCGC 0.989897 -94 CGTTAATAACCGACCCACCGGTTGTTAGCTT 20 48 1 CGACCCCCGG 0.943306 -66 GGATCACGTCCGGCCAGCCGCGGCACGGGAT 22 131 0 CGGCCACCGC 0.989897 -64 TGCATTTTGGCCGATACCCGCATCTGTTCCG 25 60 0 CCGATACCGC 0.829591 -146 GTCGCCTTGCGAGCCATCCGCCACAGTTACT 25 132 1 GAGCCACCGC 0.784688 -74 GGATTCCCCGCCGCCACCGGCTTGCACAGGA 25 180 1 CCGCCACGGC 0.444197 -26 AAACTGGAGACGCCGACCCGCGTTCGCGCTA 27 60 0 CGCCGACCGC 0.857041 -201 CGCCGCCTCCTCGCTGACGAATCA 27 247 0 CGCCTCTCGC 0.56197 -14 GCGACGCTACCAACCAACCGGTAGGTTAGCA 29 136 0 CAACCACCGG 0.71009 -62 ACGAGCTGTGCGAACATCCGCTCAACGATCA 30 40 1 CGAACACCGC 0.952621 -147 CACGGTGCCAGGCCTACCCGCGGGCCGCGCA 36 40 1 GGCCTACCGC 0.810802 -127 CCTCCTCACCCGGCTCGCCGGTTCACATCGC 36 142 0 CGGCTCCCGG 0.922803 -25 CGGGATGTCGGGACGATCCGCTAGCGTATCG 37 45 0 GGACGACCGC 0.776591 -64 CGGATCGTCCCGACATCCCGCGCAGGACACG 37 56 1 CGACATCCGC 0.671219 -53 TGCACGCTCACCGACACCCGGATGGTGCACC 38 40 1 CCGACACCGG 0.807423 -177 GTTCCCGGCCGGACAACTCGCCCGTTGTGAC 38 106 1 GGACAATCGC 0.363657 -111 TGCGACCGATCGACCAACCGCGGCGCAGCGG 38 181 1 CGACCACCGC 0.982957 -36 CTGCCACGACCGCCACCCCGCACCTGCGTAA 40 22 1 CGCCACCCGC 0.865997 -31 TAGCCGGGGCGCGCCAGCCGCTGCGAGCGTA 41 51 0 GCGCCACCGC 0.913346 -85 GGCTACCTGCCGACCAACCGCCCGGTTGGTA 41 77 1 CGACCACCGC 0.982957 -59 TGACCTCCCACCGACATTCGGCCCGGAAGCT 44 43 0 CCGACATCGG 0.330683 -24 AATTGAACAGCGGCCCATCGCCGTGCGACGT 46 110 0 CGGCCCTCGC 0.903505 -92 CCAGCCAGTTCGACCAACCGCTACGGCGTGA 47 84 0 CGACCACCGC 0.982957 -61 TGCGTCAGCGGGAACTACCGCAGAATTCACC 48 72 0 GGAACTCCGC 0.469062 -59 CTTCAGATGGGGCCCAACCGGTACGGCCCCA 50 11 0 GGCCCACCGG 0.786941 -27 CGGTAGCACTCGGCCAGCCGTCGACCCCGAT 51 34 1 CGGCCACCGT 0.684929 -181 TGGTCTGCAACGGCCCGCCGGCGGAGTCTGG 51 84 1 CGGCCCCCGG 0.965833 -131 AGAACGCACGCGAAAAATCGCACTGGGTACA 52 255 1 CGAAAATCGC 0.384303 -46 ACGTGATTGTGCGACAGCCGCCATCTTCCTG 62 119 0 GCGACACCGC 0.785339 -103 CCAACGCCAACGGCAACCCGGCCGTCTTCCC 63 122 0 CGGCAACCGG 0.901801 -93 CTGCAGACCTCCGCGTCGACAATT 69 258 0 CAGACCCCGC 0.759081 -14 GTGTACCCGCCCGATTGCCGCCGGCAACCGA 70 30 1 CCGATTCCGC 0.40026 -155 GTCCGGCCGCCAACGCTCCGCTGTCGACCCG 72 29 1 CAACGCCCGC 0.501113 -215 GCTGTCGACCCGAACAACCGGTTACAACTGC 72 48 1 CGAACACCGG 0.879926 -196 ATTAGGTAAACAGCTATCCGGGCGCAGGCGA 72 185 1 CAGCTACCGG 0.637643 -59 ACGCAGTCACCGAAGCGCCGCGAAAGGTCGG 72 218 1 CGAAGCCCGC 0.750327 -26 AGACTCCGATCGGATCATCGGGGGAAGTCTA 73 43 0 CGGATCTCGG 0.334705 -66 ****** **** Masking position 10 Map Score: 71.5028 Number of sites scoring better than the average of aligned sites = 15601 Number in coding regions = 14447 Number in noncoding regions = 1154 Number of orfs with sites within 600 bp upstream = 751 Fraction of orfs with sites within 600 bp upstream = 0.120623 Motif number 5 GGGCTCGCTCTTGGGTGGTCGCCAGTGATTGTGAC 1 125 1 TTGGTGCGCG 0.620954 -153 CGCACCATTGTTGCCTGCGCCGTTGGGCGGGATGC 2 18 0 TTGCTCCCGG 0.451896 -130 CCACCTGCTATCGCCATCCCGGGCGCCGGACCTAC 2 81 1 TCGCACCGGG 0.551663 -67 GTCGGCGCCACCGGTTAGCCTGGCGAG 7 3 0 CCGTTGCTGG 0.490611 -84 CGAGACCTAACCGGCGGCCCCGAAGCGTAGTGATG 9 12 1 CCGCGCCCGG 0.854749 -77 CGGCACCGAACTGTGGCGAAGCCAGCATCAACGAC 12 29 0 CTGGGGAGCG 0.208068 -272 CCTCGACACGCCGACGAGAAGGGGGTTTTGCGTCT 12 224 0 CCGCGGAGGG 0.781725 -77 GCCATGACCGCCGGCGACGATGCCGAGCGCAGCGA 17 56 1 CCGCGCATGG 0.39358 -43 CGCTACTGCACTGCGGCCCCGCAAGACACCGATTG 19 29 0 CTGGGCCGCG 0.85596 -66 CTTGGCCAGGCCGCCGTCCCGGGGAGCCAATGGGA 21 19 0 CCGCGCCGGA 0.765909 -78 CCGTCCGTATTCGTGGGCCCCGGCGCATAAAGTGT 22 92 0 TCGGGCCCGG 0.854561 -103 ATCCCGTGCCGCGGCTGGCCGGACGTGATCCGAGG 22 131 1 GCGCTGCGGG 0.934457 -64 CGCTAGGACGCTGTCGGCTCGGTCGCCTTGCGAGC 25 111 1 CTGCGCCGGG 0.96588 -95 CGCTGTCCTCCCGCAGGGTCTTCGTTG 27 3 1 CTGCCCCGCG 0.373678 -258 AGACGCCGACCCGCGTTCGCGCTAACGTTAGTAAC 27 49 0 CCGGTCCGCA 0.498353 -212 CGCCGCCTCCTCGCTGACGAATCACGA 27 244 0 CCGCTCCGCA 0.468171 -17 GCAGACCGGGCCGCTTCGACTCAGGAAGCGATCTC 29 83 1 CCGTTGCTCG 0.199702 -115 AGTAGTAGGCCCGGGTTCCCGGCCAGCGTTGTCAT 30 70 1 CCGGTCCGGA 0.791212 -117 CTAAGGTTTATCGTGTACCCGGATGACAACGCTGG 30 92 0 TCGGTCCGGG 0.966339 -95 ACCTTAGCCCCCGCGGGCACCGCTGGGCGAGCCAC 30 120 1 CCGGGCCCGG 0.885517 -67 GGGCCTCGCCTCCCCTGAAGAGTTTGACCA 30 167 0 TCGCTCCTGG 0.797379 -20 CACTGCTCTATTGGGCGCCCGGGCGCG 31 28 1 TTGGCCCGGG 0.489295 -17 TAACCAATAATTGACGTGGCGGTAGACCTTTCGCG 33 43 1 TTGCGGCGGG 0.902019 -258 TCGAGTCGTGCCGGGGGCACTGTGGAAATAGCAGG 33 192 1 CCGGGCCTGG 0.95053 -109 GCGATGTGAACCGGCGAGCCGGGTGAGGAGGATCT 36 142 1 CCGCGGCGGG 0.989351 -25 CACCAGTGAGCTGGGGTGACCGCGGCCGAGACCTG 38 67 1 CTGGGGCCGG 0.470299 -150 CCGAGACCTGCCGGGTTCCCGGCCGGACAACTCGC 38 92 1 CCGGTCCGGG 0.980627 -125 GTAACAGCTTTCGCGGGACCGGGGGTCACAACGGG 38 126 0 TCGGGACGGG 0.553605 -91 TTACGCAGGTGCGGGGTGGCGGTCGTGGCAGCATT 40 18 0 GCGGGGCGGG 0.962849 -35 TACCAACCGGGCGGTTGGTCGGCAGGTAGCCGGGG 41 73 0 GCGTTGCGGG 0.599216 -63 CACAAAGCTAACGCCTTGGCGGGCGGATTCGGCCT 43 82 0 ACGCTGCGGG 0.737362 -27 CTGTTGCGGTCTGAGTGGTCGGTAGTTGTCAGTGG 46 157 1 CTGGTGCGGG 0.944704 -45 CGTTCCCACTTCGCCGGGTCGTTAGGGTGGTAAGT 47 119 1 TCGCGGCGTG 0.539767 -26 CCGCGCGAATCGGGGTCGACGGCTGGCCGAGTGCT 51 38 0 CGGGTGCGGG 0.78867 -177 CGTTCTTGCACTGAGTTCACGCTCGGCGTAATAAC 52 226 0 CTGGTCCGCG 0.836167 -75 AAAAATCGCACTGGGTACACGCTCGGCGAAAGGAT 52 267 1 CTGGTCCGCG 0.836151 -34 GAGCAACGGGCCGCCGAGCTGGGCGGAA 58 4 0 CCGCGGTGGG 0.594437 -188 GACGCGGTGCCGCCGCGGGCGATACGCTCCG 60 7 1 GTGCGCCGGG 0.871902 -230 TGGCCGTCCTCCTCGTTGACGGTCGGAGCGTATCG 60 30 0 CCTGTGCGGG 0.489049 -207 GAGATGCTGGCCGCGGCGGCGACAGACTTGGGCGG 60 88 1 CCGGGGCGAG 0.427784 -149 CGCCGCCTATGCGCGTCCTCTGCGGTGACCTGGCT 60 141 1 GCGGTCCTGG 0.738325 -96 TCGAGGTGGCTCACGGTACGGGACC 62 1 1 TCGGGGCTCG 0.616557 -221 TCCGCACCCAACGTCTCCGCGGTCGCCACGTGGAT 62 60 0 ACGCTCCGGG 0.763948 -162 AATCCAGCGACCGTTTCCTCGGATGTAGCAGGGCC 63 63 0 CCGTTCCGGG 0.878596 -152 GGCAACCCGGCCGTCTTCCCGGTTGTAACACGTTC 63 107 0 CCGCTCCGGG 0.985715 -108 GGGAAGACGGCCGGGTTGCCGTTGGCGTTGGTTGT 63 122 1 CCGGTGCGTG 0.686806 -93 CTACTGGTGTTCGTGTTCGCTGACGACATGTAGCG 69 45 1 TCGGTCCTGG 0.814956 -227 CCAGCACATGTCGTCGTCTCGGCTGTCGGGAGGTG 69 140 0 TCGCGCCGGG 0.97614 -132 GTTATTGCCTTCGACTTGACGGTTGATCGTTAGCA 69 176 1 TCGCTGCGGG 0.956996 -96 CTATGTGAAATTGTCGACGCGGAGGTCTGCAG 69 250 1 TTGCGCCGGG 0.91284 -22 GGGAAGGACCTGGCCGGCACGGCCGATGATCG 71 45 1 TGGCGCCGGG 0.585537 -22 AACCGGTTGTTCGGGTCGACAGCGGAGCGTTGGCG 72 36 0 TCGGTGCAGG 0.326566 -208 GCTTCGGTGACTGCGTTGTCGCCTGCGCCCGGATA 72 199 0 CTGGTGCGCG 0.81364 -45 TCTAATGGGGGCGGCGAGCCTGGTGCGGTGTGCGA 73 12 0 GCGCGGCTGG 0.78037 -97 GCGGAGGTTGTCGCCGAGTCGGTGGCCACGGCACT 75 12 0 TCGCGGCGGG 0.955437 -74 CGGTGAGGATGCGGGGCCGCGGAGGTTGTCGCCGA 75 30 0 GCGGGCCGGG 0.967457 -56 CCGCTATCGACTGCGGAGCCTGACG 76 1 0 CTGGGGCTGG 0.809771 -67 *** ** * *** * Masking position 3 Map Score: 93.8446 Number of sites scoring better than the average of aligned sites = 25799 Number in coding regions = 24531 Number in noncoding regions = 1268 Number of orfs with sites within 600 bp upstream = 739 Fraction of orfs with sites within 600 bp upstream = 0.118696 Motif number 6 CGCCAATTGCGGGGATTCGGCTGTCCAACACG 1 180 0 GGGTTCGGCT 0.774469 -98 GCGGCTTCCGGGGCACGTTGCGCCAATTGCGG 1 200 0 GGGCGTTGCG 0.968601 -78 CAGGGACCTCTGCCGTTTTCGGGC 1 264 0 GGGCTCTGCC 0.967224 -14 GTCCGGCGCAGTGCTTGCTGCCGATACGTCGC 3 103 0 GTGTGCTGCC 0.624767 -78 GCTACGGCACCGAACTGTGGCGAAGCCAGCAT 12 36 0 CGATGTGGCG 0.52114 -265 CCGACGAGAAGGGGGTTTTGCGTCTGCTCGCC 12 217 0 GGGTTTTGCG 0.947157 -84 GGCGTGTCGAGGGACTTATGCGTCTGCTAGCG 12 247 1 GGGTTATGCG 0.717402 -54 AACGAGGATCGGGATGGTGGCCTG 14 79 1 GGGGGTGGCC 0.757519 -14 AGGCCGCAATCGGTGTCTTGCGGGGCCGCAGT 19 23 1 CGGTCTTGCG 0.783417 -72 TTGGCTCCCCGGGACGGCGGCCTGGCCAAGCT 21 24 1 GGGGGCGGCC 0.857105 -73 AGCCGCGGCACGGGATGCTGCCGTCCGTATTC 22 115 0 CGGTGCTGCC 0.905941 -80 GGTTGGGCAAGGTATCGCTGCGGCGCGCATCG 26 34 0 GGTCGCTGCG 0.621109 -123 CACCCTAACAGGGCCCCCGGCCAACCTGTTGG 26 64 0 GGGCCCGGCC 0.954711 -93 ACGGGACGCCGGGTGCTTTGCCGGCCCCAGGA 29 21 0 GGGCTTTGCC 0.938921 -177 TAGTAGGCCCGGGTTCCCGGCCAGCGTTGTCA 30 72 1 GGGCCCGGCC 0.954713 -115 GTCGGATGCCCGGCGCGCTGCGGTGGCGCCCT 32 35 1 CGGCGCTGCG 0.943055 -190 CGCTGCGGTGGCGCCCTTTGCGTATATCACAG 32 50 1 GCGCTTTGCG 0.822638 -175 TAGACCTTTCGCGCGTGTGGCGTCTGGAAAAA 33 65 1 GCGTGTGGCG 0.842741 -236 CCTGAGCTACGGAGGCGATGCGCAGGTCAGTT 33 121 0 GGACGATGCG 0.40296 -180 TGAAATGCTAGGAGGCTCTGCGGT 34 69 1 GGACTCTGCG 0.865675 -14 CGTTCCATAGGCGTGTCCTGCGCGGGATGTCG 37 66 0 GCGTCCTGCG 0.839952 -43 GAGACCTGCCGGGTTCCCGGCCGGACAACTCG 38 94 1 GGGCCCGGCC 0.954713 -123 GCCTTGGCGGGCGGATTCGGCCTCGTGGAGCA 43 73 0 GCGTTCGGCC 0.835891 -36 GACCTCCCACCGACATTCGGCCCGGAAGCTGA 44 41 0 CGATTCGGCC 0.508452 -26 GCCCGAAATGGGGGCTTTTGCGTCTGCTCGGC 47 27 0 GGGTTTTGCG 0.947157 -118 GCCCGAAATGGGGGCTTTTGCGTCTGCTCACG 47 57 1 GGGTTTTGCG 0.947157 -88 CTTTGATGCGGTGAATTCTGCGGTAGTTCCCG 48 63 1 GTGTTCTGCG 0.625316 -68 CGGCCCGCGGGGAGATCTGGCCAGCGGCACGC 52 87 0 GGATCTGGCC 0.580062 -214 CGGGTGGGATGGGAGTTTGGCGTGCTACTCAT 52 167 0 GGGTTTGGCG 0.946816 -134 CCCAGCTCGGCGGCCCGTTGCTCCACCCCACA 58 16 1 CGGCGTTGCT 0.466755 -176 TTAACCGTTTGGGCCTTCTGCTTCCGGTGCGG 58 120 1 GGGTTCTGCT 0.775654 -72 CCGCCTATGCGCGTCCTCTGCGGTGACCTGGC 60 143 1 GCGCTCTGCG 0.899029 -94 TTTATCGACACCGGGTGCTGCCAGAGAACTCG 60 193 1 CCGTGCTGCC 0.671319 -44 GATCCTTTCCGGGCTTGTTGCGGACTGGCAGG 61 12 0 GGGTGTTGCG 0.962183 -26 GCTCACGGTACGGGACCTGGCGGCCCAAGACA 62 19 1 CGGCCTGGCG 0.814265 -203 GTCCTAGTGAGGACCTTCTGCCAGTAAAACAT 66 85 0 GGATTCTGCC 0.787768 -27 ACGATAAATCGGATTCGTGGCGCTTCAGTGTT 72 116 0 GGACGTGGCG 0.825576 -128 *** ******* Masking position 10 Map Score: 43.1838 Number of sites scoring better than the average of aligned sites = 9610 Number in coding regions = 8895 Number in noncoding regions = 715 Number of orfs with sites within 600 bp upstream = 544 Fraction of orfs with sites within 600 bp upstream = 0.0873755 Motif number 7 GAACGCGAAACGAGAACGTGTTCCATTA 17 7 0 CAGAACTGTT 0.983712 -92 CACAGTCAAACGAGAACTTGTTCTAACCCGGG 48 27 1 CAGAACTGTT 0.983712 -104 CCCAAACGGTTAAGAACATGTTTCGCAGGTGA 58 101 0 TAGAACTGTT 0.84068 -91 GATTCAGAGACTAGAACGTGTTACAACCGGGA 63 94 1 CAGAACTGTT 0.983712 -121 CAAACTAGAACGTGTTACATTTCTTG 65 5 1 CAGAACTGTT 0.983712 -69 GGGGCCAGGCTAGAACACGTTTCATTACTAT 66 10 1 CAGAACCGTT 0.926447 -102 GCTACCTAAGCAAGCACTTGCTTGGTACGCTA 67 16 0 CAGCACTGCT 0.948693 -39 GCTAACCTACCAAGCACTTGCTTTGTTAGGAG 68 17 0 CAGCACTGCT 0.948693 -31 GGCAATAACTCCAGCACATGTCGTCGTCTCGG 69 153 0 CAGCACTGTC 0.89968 -119 TTCTTGCCCACTAGAACGTGTTCTAATAGTGC 69 208 0 CAGAACTGTT 0.983712 -64 * ***** **** Masking position 6 Map Score: 13.6718 Number of sites scoring better than the average of aligned sites = 28 Number in coding regions = 20 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 8 CGGGCAAGCTGTCTGGTGGCTAGGAGCCAA 1 239 0 GTCTGGTGGC 0.886016 -39 GCGGACGTAGGTCCGGCGCCCGGGATGGCG 2 92 0 GTCCGGCGCC 0.767623 -56 TTGATGCTCAGGCCGGTGCGGTTTGTCGAG 4 241 1 GGCCGGTGCG 0.696399 -41 GCTGCTGATCGTCGGATAGCGCTGGCCAAC 8 17 0 GTCGGATAGC 0.733011 -85 CTTCGCCACAGTTCGGTGCCGTAGCTGCGA 12 43 1 GTTCGGTGCC 0.573523 -258 GGACTTATGCGTCTGCTAGCGCCGGTAGAT 12 258 1 GTCTGCTAGC 0.452228 -43 TTGACCCCCTGTCCGATAGCCTGCCAGCAT 13 19 0 GTCCGATAGC 0.894439 -38 GGACGGCAGCATCCCGTGCCGCGGCTGGCC 22 121 1 ATCCCGTGCC 0.567096 -74 GTTGCATTTTGGCCGATACCCGCATCTGTT 25 63 0 GGCCGATACC 0.928017 -143 TAGTAACTGTGGCGGATGGCTCGCAAGGCG 25 134 0 GGCGGATGGC 0.819311 -72 GTCCTGTGCAAGCCGGTGGCGGCGGGGAAT 25 182 0 AGCCGGTGGC 0.69265 -24 CCAACAGGTTGGCCGGGGGCCCTGTTAGGG 26 64 1 GGCCGGGGGC 0.842859 -93 TCAAGACTAGGTCCCGTACCGGCACCCTAA 26 88 0 GTCCCGTACC 0.95892 -69 ACTGCGGACGGGCCGCTACCAAAGTCACGG 27 169 0 GGCCGCTACC 0.876969 -92 AGCACCCGGCGTCCCGTAGCGAAACGGACT 29 36 1 GTCCCGTAGC 0.949342 -162 GGTTGTACCGGTCGGATGCCCGGCGCGCTG 32 25 1 GTCGGATGCC 0.822514 -200 GAGGTTACCCGTCCCTTAGCCAACATGTCC 32 168 0 GTCCCTTAGC 0.544581 -57 GGTTCCTCCGCCTGGTGCCTACCGCATGT 35 97 0 GCCTGGTGCC 0.480237 -19 GGGTGACCGCGGCCGAGACCTGCCGGGTTC 38 80 1 GGCCGAGACC 0.674806 -137 GCGGTTGGTCGGCAGGTAGCCGGGGCGCGC 41 68 0 GGCAGGTAGC 0.59242 -68 CACCGTTGCCGTCCCGGACCGCATCCCCCT 46 59 0 GTCCCGGACC 0.789018 -143 ATTGAACAGCGGCCCATCGCCGTGCGACGT 46 110 0 GGCCCATCGC 0.534366 -92 TGGGGCCGTACCGGTTGGGCCC 50 3 1 GGGCCGTACC 0.652491 -35 GGCCGCCTGCGTCCGGTCGCGGGCTGACTC 52 45 1 GTCCGGTCGC 0.865413 -256 GCGTAATAACGGCTCATGCCAGCAGTCCTA 52 206 0 GGCTCATGCC 0.633594 -95 CCAGCTCGGCGGCCCGTTGCTCCACCCCAC 58 17 1 GGCCCGTTGC 0.620608 -175 GCGGTGACCTGGCTGGTAGCTTAGGCACGT 60 162 1 GGCTGGTAGC 0.875118 -75 GGGCCGCCAGGTCCCGTACCGTGAGCCACC 62 15 0 GTCCCGTACC 0.95892 -207 CGCACAAGTGGGCGGGTAGCGAG 62 209 1 GGCGGGTAGC 0.928694 -13 CACCAACAGTGTCGGTTGCCGGCGGCAATC 70 42 0 GTCGGTTGCC 0.534853 -143 CTTGGTGACCGTCCGGTACCCGGGCATGGG 70 128 1 GTCCGGTACC 0.976235 -57 GTTCGTTCCAGTCCCATGCCCGGGTACCGG 70 140 0 GTCCCATGCC 0.890504 -45 TCCGATCGGAGTCTGGTGCCGCGCCGCCAC 73 60 1 GTCTGGTGCC 0.906471 -49 GGTCGAATCGGGCGGGTACCCTCTTTGACG 74 20 1 GGCGGGTACC 0.941745 -20 AAGTGCCGTGGCCACCGACTCG 75 3 1 GTGCCGTGGC 0.625994 -83 CCTTAACCGCGTCGCCTACCATCGAGCCTC 75 66 1 GTCGCCTACC 0.521211 -20 ********** Masking position 10 Map Score: 34.4637 Number of sites scoring better than the average of aligned sites = 6715 Number in coding regions = 6227 Number in noncoding regions = 488 Number of orfs with sites within 600 bp upstream = 383 Fraction of orfs with sites within 600 bp upstream = 0.0615162 Motif number 9 GAGGCACCAGCGGGTTGGCCGCGGCGGGCTCGC 1 100 1 CGGTGGCGCG 0.912678 -178 CGGCTCAGCTCTCGCTGTTAGCGCGCCCTGACC 3 143 0 CCGTGTAGCG 0.898664 -38 GCCGTGTGCTCCGGATGAGCGCGACGGTAACCC 4 14 1 CGGTGACGCG 0.983026 -268 TAGTGCGCACCTCGTTGCGCGCGCCAGATCGGG 4 184 0 CCGTGCCGCG 0.826963 -98 TGGCCCAGGTCTGGACGTACGCGATCACCGCCG 8 54 1 CGGCGTCGCG 0.987602 -48 AGAGGGAGCACAGGATGAGCGCC 10 30 1 CGGTGACGCC 0.839348 -13 GCATCAACGACGTGCCGATCGCCGAATCC 12 7 0 CTGCGACGCC 0.381961 -294 TCACCCTACCCAAGCCGAACGCGAAACGAGAAC 17 22 0 CAGCGACGCG 0.880839 -77 AACCGACCCACCGGTTGTTAGCTTGGAAGGTGC 20 55 1 CGGTGTAGCT 0.526077 -59 ATACGTTTCCCCGGAGCAGCGCGTAGTCAGCGC 22 46 0 CGGGCACGCG 0.778911 -149 GCGACAACACCCGGGGGTAAGCG 25 1 0 CGGGGTAGCG 0.981364 -205 GCAAGGCGACCGAGCCGACAGCGTCCTAGCGGG 25 109 0 CAGCGAAGCG 0.856029 -97 GAAGACCCTGCGGGAGGACAGCG 27 1 0 CGGGGAAGCG 0.986436 -260 TTGCCGGCCCCAGGAGGTCAGCGCC 29 3 0 CGGGGTAGCG 0.981364 -195 TATCGTGTACCCGGATGACAACGCTGGCCGGGA 30 86 0 CGGTGAAACG 0.840516 -101 CCGCTCCTTACTGGACGTGAACGGCTGACCTGT 32 200 0 CGGCGTAACG 0.870535 -25 CTCCGTAGCTCAGGTGGATAGAGCAAGGGCCTT 33 139 1 CGGGGAAGAG 0.675508 -162 GCCAGGCCTACCCGCGGGCCGCGCACCTGGTAA 36 46 1 CCGGGGCGCG 0.875476 -121 ACCAGTGAGCTGGGGTGACCGCGGCCGAGACCT 38 68 1 TGGTGACGCG 0.631596 -149 GGATGCGGTCCGGGACGGCAACGGTGGCACACT 46 63 1 CGGCGGAACG 0.772417 -139 CCCACTTCGCCGGGTCGTTAGGGTGGTAAGTC 47 123 1 CGGCGTAGGG 0.730219 -22 CCGATTCGCGCGGGCGGAAAGCGTTGGTCTGCA 51 60 1 CGGGGAAGCG 0.986436 -155 CGGCTTATCCCGCGCGGCCCGCGGGGAGATCTG 52 100 0 CCGGGCCGCG 0.71735 -201 CCTCGGTCATCGGGGTGATAGCGGACCACCCTA 53 50 0 CGGTGAAGCG 0.980309 -30 CCGCGGTCGCCACGTGGATCGCGTCGAGTGTCT 62 46 0 CCGGGACGCG 0.955542 -176 GTCTTTATCACTGGCCGTCAGCAGCCGTCCACT 63 165 0 CGGCGTAGCA 0.662813 -50 CTGCCCGCTACATGTCGTCAGCGAACACGAACA 69 52 0 CTGCGTAGCG 0.810755 -220 CCGCTTGTGCCAGGGTGTACCCGCCCGATTGCC 70 16 1 CGGTGTCCCG 0.680148 -169 TCGGCCCGGTCCGGCCGCCAACGCTCCGCTGTC 72 21 1 CGGCGCAACG 0.772441 -223 ACCGGTTGTTCGGGTCGACAGCGGAGCGTTGGC 72 37 0 CGGCGAAGCG 0.988822 -207 * ** *** **** Masking position 4 Map Score: 45.3644 Number of sites scoring better than the average of aligned sites = 4747 Number in coding regions = 4424 Number in noncoding regions = 323 Number of orfs with sites within 600 bp upstream = 294 Fraction of orfs with sites within 600 bp upstream = 0.0472213 Motif number 10 GCGAGCCCGCCGCGGCCAACCCGCTGGTGCC 1 102 0 CGCGGCCACC 0.973163 -176 CTCTGCCGTTTTCGGGCAAGCTGTCTGGTGG 1 250 0 TTCGGGCAGC 0.640944 -28 GCGTGTTGCATCCCGCCCAACGGCGCAGGCA 2 11 1 TCCCGCCAAC 0.267538 -137 GGAGTGAATCCCGCCCGGCTCAGCTCTCG 3 162 0 TCCCGCCGGC 0.906727 -19 TTTGACGAGCCGCGGCCTCGCTGCAAACATT 4 109 1 CGCGGCCCGC 0.913726 -173 AATGTCTTTGTCCTGCCAACCTGAGGAGCAG 5 14 1 TCCTGCCACC 0.564858 -60 CCATCGTAGGTGCGGTCTAGCGGCT 6 5 0 TGCGGTCAGC 0.432508 -37 CTCGCCAGGCTAACCGGTGGCGCCG 7 5 1 CCAGGCTACC 0.145518 -82 TGGCACGAAACGACGGCGAGCAGACGCAAAA 12 203 1 CGACGGCAGC 0.492063 -98 AACGCCACATGCTGGCAGGCTATCGGACAG 13 10 1 TGCTGGCGGC 0.444665 -47 TTCGACTAACCGCAGCCTGCCAAAGCCATCG 14 50 0 CGCAGCCGCC 0.578458 -43 CCGCCGGCGACGATGCCGAGCGCAGCGATGA 17 63 1 CGATGCCAGC 0.322177 -36 AGACACCGATTGCGGCCTAGCATCAGTGAC 19 10 0 TGCGGCCAGC 0.941889 -85 GCTACTGCACTGCGGCCCCGCAAGACACCGA 19 32 0 TGCGGCCCGC 0.829056 -63 TTCTCACCCATTTCGCCGGCCATCCGCTAGC 20 14 1 TTTCGCCGCC 0.344416 -100 TGTTGGACGTTTCGGCCAAGCACCTTCCAAG 20 76 0 TTCGGCCAGC 0.84456 -38 GGGACGGCGGCCTGGCCAAGCTCTGAATCTG 21 34 1 CCTGGCCAGC 0.756512 -63 TCGGATCACGTCCGGCCAGCCGCGGCACGGG 22 133 0 TCCGGCCGCC 0.960074 -62 TAACAGGGCCCCCGGCCAACCTGTTGGTTGG 26 60 0 CCCGGCCACC 0.969832 -97 TGGCACCCACTGCGGACGGGCCGCTACCAAA 27 176 0 TGCGGACGGC 0.568822 -85 ACGCCGGGTGCTTTGCCGGCCCCAGGAGGTC 29 17 0 CTTTGCCGCC 0.156012 -181 AGGCCCGGGTTCCCGGCCAGCGTTGTCATCC 30 76 1 TCCCGGCAGC 0.713349 -111 CGCGCCCGGGCGCCCAATAGAGCAG 31 30 0 CCCGGGCCCC 0.76081 -15 AAAAATTCCTCGACGGCCACCGTTAGATAAA 33 92 1 CGACGGCACC 0.500196 -209 GATCACGGTGCCAGGCCTACCCGCGGGCCGC 36 37 1 CCAGGCCACC 0.832458 -130 TTACCAGGTGCGCGGCCCGCGGGTAGGCCTG 36 48 0 CGCGGCCGCG 0.515291 -119 GACCGATGTTTCCGGCCTGCCAGACTGGACG 36 93 0 TCCGGCCGCC 0.962066 -74 ATCCTCCTCACCCGGCTCGCCGGTTCACATC 36 144 0 CCCGGCTGCC 0.658498 -23 CTGGGGTGACCGCGGCCGAGACCTGCCGGGT 38 77 1 CGCGGCCAGA 0.610192 -140 CTGCCGGGTTCCCGGCCGGACAACTCGCCCG 38 99 1 CCCGGCCGAC 0.715578 -118 ATCGACCAACCGCGGCGCAGCGGTACGAGAG 38 189 1 CGCGGCGAGC 0.415846 -28 GAGCGTAACGCCACGGCGAGCTTGCGTGCAC 41 27 0 CCACGGCAGC 0.461725 -109 GGCTGGCGCGCCCCGGCTACCTGCCGACCAA 41 63 1 CCCCGGCACC 0.852307 -73 ACGAGGCCGAATCCGCCCGCCAAGGCGTTAG 43 79 1 ATCCGCCGCC 0.208854 -30 CCCACCGACATTCGGCCCGGAAGCTGACTGA 44 37 0 TTCGGCCGGA 0.298935 -30 CCCCCTACATTGAGGCCAGGCTCCAACCGAA 46 34 0 TGAGGCCGGC 0.812391 -168 TTTGCGTCTGCTCGGCCAACCTAGCCCAACT 47 12 0 CTCGGCCACC 0.924522 -133 ATCCAGCCAGTTCGACCAACCGCTACGGCGT 47 86 0 TTCGACCACC 0.114958 -59 CTTGTTCTAACCCGGGCCACCTTTGATGCGG 48 43 1 CCCGGGCACC 0.906992 -88 GACGGTAGCACTCGGCCAGCCGTCGACCCCG 51 32 1 CTCGGCCGCC 0.955085 -183 TGCCAGACTCCGCCGGCGGGCCGTTGCAGAC 51 86 0 CGCCGGCGGC 0.883052 -129 GTTTGTAGGACCAGGCCTGCCGCCAGCCTGA 51 126 1 CCAGGCCGCC 0.896318 -89 GGTGACATACTGCTGGCCGCCTGCGTCCGGT 52 31 1 TGCTGGCGCC 0.421683 -270 GCTTATCCCGCGCGGCCCGCGGGGAGATCTG 52 100 0 CGCGGCCGCG 0.515291 -201 CAAACTCCCATCCCACCCGGCCATGGTAGGA 52 180 1 TCCCACCGGC 0.238739 -121 TGAGCCGTTATTACGCCGAGCGTGAACTCAG 52 220 1 TTACGCCAGC 0.311534 -81 TGCACCATCCTTTCGCCGAGCGTGTACCCAG 52 277 0 TTTCGCCAGC 0.226277 -24 TTCCGCCCAGCTCGGCGGCCC 58 1 1 TTCCGCCAGC 0.746733 -191 CTGCTTCCGGTGCGGTCCGGCGGACACTTAT 58 137 1 TGCGGTCGGC 0.567763 -55 CTGTCGCCGCCGCGGCCAGCATCTCCGGGTT 60 82 0 CGCGGCCGCA 0.723904 -155 CCGGGCTTGTTGCGGACTGGCAGGA 61 5 0 TGCGGACGGC 0.570043 -33 CGTCGAGTGTCTTGGGCCGCCAGGTCCCGTA 62 27 0 CTTGGGCGCC 0.408917 -195 CGCACAATCACGTGGCCTGGCGGTGGCATCC 62 137 1 CGTGGCCGGC 0.859061 -85 ACTTGTGCGTTCCGGCCCGGAAATTGTAACC 62 187 0 TCCGGCCGGA 0.438491 -35 GGTTGCCACGGCCGCCACCTCTTTCT 65 58 0 CCACGGCGCC 0.606303 -16 ATTTCCCACCTCCCGACAGCCGAGACGACGA 69 134 1 TCCCGACGCC 0.396913 -138 GCCCGATTGCCGCCGGCAACCGACACTGTTG 70 38 1 CGCCGGCACC 0.866489 -147 CCATCTTCGGCCCGGTCCGGCCGCCAACGCT 72 15 1 CCCGGTCGGC 0.716921 -229 GTCCGCCGACCTTTCGCGGCG 72 233 0 GTCCGCCACC 0.183296 -11 GCACACCGCACCAGGCTCGCCGCCCCCATTA 73 14 1 CCAGGCTGCC 0.228578 -95 TCTGGTGCCGCGCCGCCACGCCAACACCTGC 73 71 1 CGCCGCCCGC 0.851841 -38 CGACAACCTCCGCGGCCCCGCATCCTCACCG 75 34 1 CGCGGCCCGC 0.913636 -52 CCCTTAACCGCGTCGCCTACCATCGAGCCTC 75 65 1 CGTCGCCACC 0.663162 -21 ******* *** Masking position 5 Map Score: 80.1143 Number of sites scoring better than the average of aligned sites = 28006 Number in coding regions = 26134 Number in noncoding regions = 1872 Number of orfs with sites within 600 bp upstream = 945 Fraction of orfs with sites within 600 bp upstream = 0.151783 Motif number 11 GCCACGATCAAGAGGAGGGGCAGCGACGTAT 3 81 1 AGAGGAGGGC 0.967293 -100 CGTAACCGTTTGACGAGCCGCGGCCTCGCTG 4 101 1 TGACGAGCGC 0.899926 -181 CCTGCCAACCTGAGGAGCAGATAAGATTGAC 5 25 1 TGAGGAGCGA 0.858505 -49 CGCAAGAGTTTGTGGAGCTTCCACGACAACC 12 125 0 TGTGGAGCTC 0.754115 -176 AGCGCAGCGATGAGGAGGAGCGGCGCAT 17 81 1 TGAGGAGGGC 0.989261 -18 TGGCACCCACTGCGGACGGGCCGCTACCAAA 27 176 0 TGCGGACGGC 0.831948 -85 GCGAGCCGGGTGAGGAGGATCT 36 155 1 TGAGGAGGTC 0.963608 -12 TCTGGTGATTGAGGAGTGGCGCAG 42 10 1 TGAGGAGTGC 0.922771 -15 CGGGGTGAGGAGGAGCCGGGCGATTC 46 6 1 TGAGGAGGGC 0.989261 -196 AGGTCACCGCAGAGGACGCGCATAGGCGGCG 60 141 0 AGAGGACGGC 0.902517 -96 GCTGTCCTAGTGAGGACCTTCTGCCAGTAAA 66 89 0 TGAGGACCTC 0.892348 -23 ACTTGCTTTGTTAGGAGCGTCCG 68 3 0 TTAGGAGCTC 0.635573 -45 ACCGCCCGGAAGAGGAGCTGCCCGCTACATG 69 71 0 AGAGGAGCGC 0.967293 -201 ******** ** Masking position 6 Map Score: 13.1128 Number of sites scoring better than the average of aligned sites = 422 Number in coding regions = 303 Number in noncoding regions = 119 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 12 CCGATGTGATCGGTACATCTGTGGCGAATGT 2 127 1 CGGTCACTGC 0.974142 -21 CTTCGTCGTCCGGCGCAGTGCTTGCTGCCGATACG 3 107 0 CGGCCATTGC 0.809494 -74 GAATCCCGCCCGGCTCAGCTCTCGCTGTTAGCGCG 3 151 0 CGGCCACTGC 0.988464 -30 CGACGATCAGCAGCGCAACCATGGCCCAGGTCTGG 8 33 1 CAGCCACTGC 0.964746 -69 ACTTGCGGGTCAGTTGAACGGTGGCACGAAACGAC 12 182 1 CAGTGACTGC 0.938945 -119 AATTTCGCCTCGGTACAGCGATGGCTTTGGCAGGC 14 32 1 CGGTCACTGC 0.974142 -61 TCTTGCGGGGCCGCAGTGCAGTAGCGTCACCCTCG 19 38 1 CCGCGTCTGC 0.929236 -57 CCCATTTCGCCGGCCATCCGCTAGCCAACGTTAAT 20 20 1 CGGCATCTGC 0.842225 -94 ATTGACGTGGCGGTAGACCTTTCGCGCGTGTGGCG 33 52 1 CGGTGACTGC 0.979655 -249 GCGCCGCGGTTGGTCGATCGGTCGCATATCGATGG 38 172 0 TGGTGACTGC 0.717925 -45 CTCATGCCAGCAGTCCTACCATGGCCGGGTGGGAT 52 189 0 CAGTCTCTGC 0.870345 -112 GCGGCACTGCCGTTGCGATAGTCTCC 56 2 1 CGGCCTCTGC 0.979509 -29 TGGCCGTCAGCAGCCGTCCACTAGCTGTCGACAAC 63 152 0 CAGCGTCTGC 0.951254 -63 CTCCTCTTCCGGGCGGTTCGTTTGCAAACGATACG 69 85 1 GGGCGTCTGC 0.827188 -187 TTCGACTTGACGGTTGATCGTTAGCACTATTAGAA 69 185 1 CGGTGACTGC 0.979655 -87 TTCGGGTCGACAGCGGAGCGTTGGCGGCCGGACCG 72 27 0 CAGCGACTGC 0.972205 -217 GTCCGCCGACCTTTCGCGGCGCTTCGG 72 227 0 CCGCGACTGC 0.959245 -17 **** ** * * ** Masking position 12 Map Score: 31.1747 Number of sites scoring better than the average of aligned sites = 1256 Number in coding regions = 1173 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 87 Fraction of orfs with sites within 600 bp upstream = 0.0139737 Motif number 13 CACTCTGCGTGGTGCGCCACCTCGACGCGGA 1 71 1 GGTGCGCACC 0.883803 -207 GGCGATAGCAGGTGGGCGACTCCGATGAGCT 2 65 0 GGTGGGCACT 0.563373 -83 ACGATCAAGAGGAGGGGCAGCGACGTATCGG 3 84 1 GGAGGGGAGC 0.441973 -97 CTGTCTAAGTGGTGCGTAACCGTTTGACGAG 4 87 1 GGTGCGTACC 0.877623 -195 AAGGTGTGCTGCAGCGCGACGCGGGTAGTGC 7 60 1 GCAGCGCACG 0.450865 -27 CGGGCTGCACTACCCGCGTCGCGC 7 73 0 GCTGCACACC 0.30266 -14 CCGACGATCAGCAGCGCAACCATGGCCCAGG 8 32 1 GCAGCGCACC 0.927576 -70 CGGTGCCGTAGCTGCGATACCACTGGCCGTT 12 56 1 GCTGCGAACC 0.519232 -245 TCGACTATTCGCTACGCAAGAGTTTGTGGAG 12 139 0 GCTACGCAGA 0.14656 -162 CCCGCAAGTGGCAGCGCGAGCTCGACTATTC 12 160 0 GCAGCGCAGC 0.822383 -141 GGGTCAATACGGAGGGCGACAAAAG 13 42 1 GGAGGGCACA 0.44538 -15 CCTACGGCCCGCTAGGCTATCGACCA 18 6 0 GCTAGGCATC 0.320353 -30 CAACAGCATGGGAAGGCGAGCA 20 102 1 GGAAGGCAGC 0.79252 -12 CGGATGGCTCGCAAGGCGACCGAGCCGACAG 25 121 0 GCAAGGCACC 0.851431 -85 GATGCGCGCCGCAGCGATACCTTGCCCAACC 26 35 1 GCAGCGAACC 0.400278 -122 TTAGGGTGCCGGTACGGGACCTAGTCTTGAA 26 88 1 GGTACGGACC 0.697279 -69 CACTGCGGACGGGCCGCTACCAAAGTCACGG 27 169 0 GGGCCGCACC 0.822475 -92 GATAGGTAGTGGTAGGCAACCTTCGTGATTC 27 222 1 GGTAGGCACC 0.909831 -39 CCAACCAACCGGTAGGTTAGCACTGCCCTGT 29 127 0 GGTAGGTAGC 0.538657 -71 CTTGGGATCGGCGACGCTACCAACCAACCGG 29 146 0 GCGACGCACC 0.893142 -52 CGCGGGCACCGCTGGGCGAGCCACGATCTAG 30 131 1 GCTGGGCAGC 0.83449 -56 ATATACGCAAAGGGCGCCACCGCAGCGCGCC 32 46 0 AGGGCGCACC 0.364119 -179 GCTGACCTGTGCGAGGTTACCCGTCCCTTAG 32 179 0 GCGAGGTACC 0.56248 -46 GCGGTGTCAAGCCACGCCACCATGCTGACCT 33 224 0 GCCACGCACC 0.763721 -77 ACTGTTACCAGGTGCGCGGCCCGCGGGTAGG 36 52 0 GGTGCGCGCC 0.656458 -115 AGGTAGCCGGGGCGCGCCAGCCGCTGCGAGC 41 54 0 GGCGCGCAGC 0.794888 -82 TTTCTTCCCCGGAGGGCATCC 41 125 1 GGAGGGCTCC 0.398387 -11 GAATGTCGGTGGGAGGTCACCT 44 55 1 GGGAGGTACC 0.703461 -12 ACCTTCAGATGGGGCCCAACCGGTACGGCCC 50 13 0 GGGGCCCACC 0.464939 -25 TAAGCTACCAGCCAGGTCACCGCAGAGGACG 60 154 0 GCCAGGTACC 0.33361 -83 GGTGGCTCACGGTACGGGACCTGGCGGCCCA 62 15 1 GGTACGGACC 0.697279 -207 ATCTTCCTGTGGTAGGTGATCATCGCCGTCA 62 97 0 GGTAGGTATC 0.140374 -125 GCACTTGCTTGGTACGCTAGCACA 67 4 0 GGTACGCAGC 0.856115 -51 CACTCCTGCGGGTTCGCTACCTAAGCAAGCA 67 32 0 GGTTCGCACC 0.582254 -23 GCAAGTGCTTGGTAGGTTAGCCTACAGGGC 68 28 1 GGTAGGTAGC 0.538657 -20 TGGTGCGTCGGGAGCGCTACTGGTGTTCGTG 69 29 1 GGAGCGCACT 0.494844 -243 CCCGGGTACCGGACGGTCACCAAGACTGTAG 70 121 0 GGACGGTACC 0.376381 -64 AGTCTAATGGGGGCGGCGAGCCTGGTGCGGT 73 18 0 GGGCGGCAGC 0.578857 -91 GAGGCTCGATGGTAGGCGACGCGGTTAAGGG 75 65 0 GGTAGGCACG 0.526061 -21 ATCGTCGAACGGGGCGCTACCGCTAACGGA 77 10 0 GGGGCGCACC 0.964964 -70 ******* *** Masking position 1 Map Score: 34.3698 Number of sites scoring better than the average of aligned sites = 6899 Number in coding regions = 6369 Number in noncoding regions = 530 Number of orfs with sites within 600 bp upstream = 450 Fraction of orfs with sites within 600 bp upstream = 0.0722775 Motif number 14 GTTTAGATGTGACCGCGTCGGATTCCCCGA 3 49 0 GACCGCGTCG 0.874609 -132 CCCTCCTCTTGATCGTGGCGAGTTTAGATG 3 70 0 GATCGTGGCG 0.92521 -111 CAGCGGCGGTGATCGCGTACGTCCAGACCT 8 60 0 GATCGCGTAC 0.741689 -42 GGGTGACTAGGATCGCGGTTATCACCG 11 78 1 GATCGCGGTT 0.870566 -17 CGAGGATCGGGATGGTGGCCTG 14 81 1 GATGGTGGCC 0.750803 -12 GCAAGACACCGATTGCGGCCTAGCATCAGT 19 14 0 GATTGCGGCC 0.885386 -81 CACACCCTCGGATCACGTCCGGCCAGCCGC 22 141 0 GATCACGTCC 0.824813 -54 TCGCGACGGAGATCGCTTCCTGAGTCGAAG 29 96 0 GATCGCTTCC 0.814769 -102 CAGCAATCTAGATCGTGGCTCGCCCAGCGG 30 139 0 GATCGTGGCT 0.862949 -48 TTGGTATTGCGATCACGGTGCCAGGCCTAC 36 27 1 GATCACGGTG 0.570354 -140 GAGCTGGGGTGACCGCGGCCGAGACCTGCC 38 74 1 GACCGCGGCC 0.897345 -143 CCAGTGATGATCCCGGCGATGGTGACAT 52 9 1 GATCCCGGCG 0.878885 -292 TACTCATACTGATCGCGGTCCTAGCGGTAT 52 144 0 GATCGCGGTC 0.886673 -157 TCGCCACGTGGATCGCGTCGAGTGTCTTGG 62 43 0 GATCGCGTCG 0.967643 -179 ACCACAGGAAGATGGCGGCTGTCGCACAAT 62 115 1 GATGGCGGCT 0.871749 -107 CCGATTGAATGATCGCGTCTTTATCACTGG 63 184 0 GATCGCGTCT 0.938353 -31 CCCGTTCGACGATCGCTGCCTAGAGCTAGA 77 28 1 GATCGCTGCC 0.927133 -52 ********** Masking position 2 Map Score: 17.7606 Number of sites scoring better than the average of aligned sites = 4499 Number in coding regions = 4250 Number in noncoding regions = 249 Number of orfs with sites within 600 bp upstream = 226 Fraction of orfs with sites within 600 bp upstream = 0.0362994 Motif number 15 TAGTGCGCACCTCGTTGCGCGCGCCAGATCG 4 186 0 CTCGTGCGCG 0.864675 -96 GGCTGCACTACCCGCGTCGCGCTGCAGCACA 7 64 0 CCCGCTCGCG 0.725982 -23 CCCTCTGGTTCTCGTGATGCCGGTG 10 5 0 CTCGTATGCC 0.731224 -38 GCATAAGTCCCTCGACACGCCGACGAGAAGG 12 237 0 CTCGAACGCC 0.932382 -64 GGAACACGTTCTCGTTTCGCGTTCGGCTTGG 17 15 1 CTCGTTCGCG 0.897232 -84 ACGGCAGCATCCCGTGCCGCGGCTGGCCGGA 22 123 1 CCCGTCCGCG 0.855111 -72 GAAATAGAAACTGGAGACGCCGACCCGCGTT 27 67 0 CTGGAACGCC 0.519514 -194 TTGTGTGATCCTCGACACACGTACAAAACCG 33 12 0 CTCGAACACG 0.850556 -289 TTGACACCGCCTCGTTATGGGTCGACGCCCA 33 245 1 CTCGTATGGG 0.726612 -56 AAACGGCGCCATCGATATGCGACCGATCGAC 38 164 1 ATCGAATGCG 0.467317 -53 CCATTTCGGGCCCGAAATGGGGGCTTTTGCG 47 37 0 CCCGAATGGG 0.773818 -108 CCATTTCGGGCCCGAAATGGGGGCTTTTGCG 47 48 1 CCCGAATGGG 0.773818 -97 AGCCGTCGACCCCGATTCGCGCGGGCGGAAA 51 49 1 CCCGATCGCG 0.850857 -166 CTGGGCTCGTAACGCGTCAGTGGTTA 57 11 0 CTCGTACGCG 0.959003 -16 TGCCAGAGAACTCGAGACGCGGCACAGGTCG 60 211 1 CTCGAACGCG 0.978007 -26 CCAGGTCCTTCCCGATACACGCAGCTGGAAA 71 27 0 CCCGAACACG 0.847097 -40 ***** ***** Masking position 4 Map Score: 11.2564 Number of sites scoring better than the average of aligned sites = 1905 Number in coding regions = 1703 Number in noncoding regions = 202 Number of orfs with sites within 600 bp upstream = 170 Fraction of orfs with sites within 600 bp upstream = 0.0273049