AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00450_mtub_reg_300.orf -o00450_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 purT 300 purT #2 ggtA 50 ggtA #3 Rv0774c 28 hypothetical protein Rv0774c #4 lpqS 148 lpqS #5 cysM3 202 cysM3 #6 metS 85 metS #7 lipU 300 lipU #8 cysM2 56 cysM2 #9 pra 201 pra #10 metB 31 metB #11 Rv1284 206 hypothetical protein Rv1284 #12 cysD 93 cysD #13 Rv1335 21 hypothetical protein Rv1335 #14 mIHF 300 mIHF #15 gmk 134 gmk #16 Rv1390 65 hypothetical protein Rv1390 #17 metK 127 metK #18 cysK 300 cysK #19 nirA 300 nirA #20 ggtB 36 ggtB #21 sahH 104 sahH #22 Rv3252c 108 hypothetical protein Rv3252c #23 Rv3253c 90 hypothetical protein Rv3253c #24 metC 282 metC #25 ponA' 300 ponA' #26 Rv3683 68 hypothetical protein Rv3683 #27 Rv3684 62 hypothetical protein Rv3684 Motif number 1 GCGCTGCGTGGCTGGGTCGTC 1 2 1 CGCTGCGTGG 0.916027 -299 ACGAACCCTGCGCGGACCGGACAGCTTCGG 1 56 0 CGCGGACCGG 0.949878 -245 CCAGTCGCCTGGCTCGCGGCAGCGACGAAC 1 80 0 GGCTCGCGGC 0.905831 -221 AATAGGTATGCGCCCAGTCGCCTGGCTCGC 1 93 0 CGCCCAGTCG 0.754643 -208 ACATGGTTGCCGCCACCCGAATAGGTATGC 1 112 0 CGCCACCCGA 0.540809 -189 CCGGATGGATGGCTAAGCGGTCATCAAGTT 1 147 1 GGCTAAGCGG 0.615965 -154 CTCACCCTCTCGCTCGGTCGTTGCTCGGCT 1 278 0 CGCTCGGTCG 0.846787 -23 GGCGTGAGCACGCCGTTTGGTTGGACCTTC 2 13 1 CGCCGTTTGG 0.655432 -38 CCTTCCCCTACGCTTGGCCGCGC 2 38 1 CGCTTGGCCG 0.717271 -13 GGCGGATGATGGCGTGGTGATCATCAACCG 4 77 0 GGCGTGGTGA 0.56533 -72 GTATATAGTGGGCCACGTGGAAAGCGGGCA 4 128 1 GGCCACGTGG 0.919645 -21 GGGGTCAGCGCCAGGCGGTGGTGGCCAT 5 9 1 CGCCAGGCGG 0.959168 -194 AGCGGTCACCGGCGATGGCGAATGGCCACC 5 30 0 GGCGATGGCG 0.449496 -173 CGCCGGTGACCGCTGACCCCCATCCAGTGC 5 46 1 CGCTGACCCC 0.615942 -157 TGGCCAACCGGGCGCACCGCACCTTG 5 187 1 GGCGCACCGC 0.888678 -16 CGAGATCCACCGCCCGCTCCGGAACCCCTG 6 17 0 CGCCCGCTCC 0.903388 -69 GATCTCGTCTGGCTGGGCGGTCGGAGCTCA 6 40 1 GGCTGGGCGG 0.970933 -46 ATTGTGTGCGGGTGAGCTCCGACCGCCCAG 6 52 0 GGTGAGCTCC 0.476808 -34 CACACAATAGGGTGGTGTCGAA 6 74 1 GGTGGTGTCG 0.547877 -12 AAGCTAAGTTCGCGGGGTTGGCTGAGCCAG 7 48 1 CGCGGGGTTG 0.831679 -253 CTGAGCCAGAGGCTCAGCCGCTTCGTCACA 7 69 1 GGCTCAGCCG 0.60024 -232 GACAACTCTGGGTGAGCCGGATACCTTACT 7 149 0 GGTGAGCCGG 0.823249 -152 GCCTTCAACACGTCGCGCGGCGAAATGACA 7 175 0 CGTCGCGCGG 0.855564 -126 GATCAGCGACGGCGCCCCGGTGGAGGTCGT 7 232 1 GGCGCCCCGG 0.974025 -69 CGATTAGCTGCGCTGGCGTCACGA 7 287 1 CGCTGGCGTC 0.507717 -14 CAGGCACACGCGCTCCGTCGGCATCCCG 8 9 0 CGCTCCGTCG 0.730751 -48 TCGTCTCAGGCGCCTGCCGGCCAGGCACAC 8 30 0 CGCCTGCCGG 0.96362 -27 CGCGCAGGCAGGCGCGCCGCAATTTAGTTC 9 12 1 GGCGCGCCGC 0.977841 -190 GTGCGGCACTGGCCGCCTGCCGTAATTGTT 9 49 0 GGCCGCCTGC 0.971 -153 GTGCCGCACAGGTCGTGGGCACTGACCCAT 9 70 1 GGTCGTGGGC 0.592292 -132 TGACCCATTGGGCCCCGTGGCTCATCTCAC 9 92 1 GGCCCCGTGG 0.962484 -110 TTCACCGGAACGCCCGGCGGTGAGATGAGC 9 111 0 CGCCCGGCGG 0.981337 -91 CGGACGGTCGGGTGGGCAGTGCAGT 10 17 0 GGTCGGGTGG 0.922878 -15 GGCACGCCATCGCCGGGCTCGCTACCCTGT 11 35 0 CGCCGGGCTC 0.799457 -172 CCCATCAACCGGCGCGCTGGCGGCACGCCA 11 56 0 GGCGCGCTGG 0.984135 -151 TGGGGTCACCCGTGATCCGGATGGTTCCGC 11 82 1 CGTGATCCGG 0.512323 -125 CGGATGGTTCCGCTCGGGCCGATTCTGATG 11 99 1 CGCTCGGGCC 0.662236 -108 TAAAATTCACCGCGGCGTCGATCTGAGTAG 11 153 1 CGCGGCGTCG 0.898089 -54 CCTCGGGTATCGCGGTGTGGACTTTGCTAC 11 179 0 CGCGGTGTGG 0.945708 -28 GCGGGCCTCCTCGGGTATCGCGG 11 194 0 GGCCTCCTCG 0.83928 -13 GTGCGCCCTAGGCTGACGGCTCGGGCTG 12 9 0 GGCTGACGGC 0.744281 -85 GTCAGCCTAGGGCGCACTGGCGCACCGGCA 12 22 1 GGCGCACTGG 0.918201 -72 GCCCCATCTCGGCGGGCTGCCGGTGCGCCA 12 39 0 GGCGGGCTGC 0.983628 -55 GCCGAGATGGGGCTGCGTTGACAGCGATAG 12 56 1 GGCTGCGTTG 0.510015 -38 CGACCTATCGCGCGTGTCGCGCCATGGTTG 14 176 0 CGCGTGTCGC 0.490521 -125 GGGGATCACTCGCGGTTGGGCGACCTATCG 14 196 0 CGCGGTTGGG 0.561273 -105 CGAGTTGCGACGCCACCTGCCGCCACCAGT 14 233 1 CGCCACCTGC 0.879493 -68 CGTCGGCCGTCGTCGACCGGTTGAGCAGGT 14 263 1 CGTCGACCGG 0.745951 -38 TGGATTTCGGCTTTCCGGACCTGCTCAA 14 283 0 GGCTTTCCGG 0.733996 -18 CCGCATCGTCGGCCGGCGGGG 15 2 0 GGCCGGCGGG 0.982719 -133 GCCCACCACAGGCCTTCCGGCCCGCATCGT 15 23 0 GGCCTTCCGG 0.899123 -112 GCCTGTGGTGGGCGTACCCCCGCATACGGG 15 40 1 GGCGTACCCC 0.552695 -95 ACGGGGGAGAGGCGGCCTGACAGGGCCAGC 15 65 1 GGCGGCCTGA 0.794733 -70 GGCCTGACAGGGCCAGCTCACAATTCAGGC 15 78 1 GGCCAGCTCA 0.498073 -57 TCAGGCCGAACGCCCCGTGGGGGGAACCCG 15 102 1 CGCCCCGTGG 0.95453 -33 GGCGCTCCTGGGCGGGTTCCCCCCACGGGG 15 114 0 GGCGGGTTCC 0.641669 -21 TGGCGCTCCTGGGCGGGTTCC 15 124 0 GGCGCTCCTG 0.62233 -11 CGGGTCCGGCGGCCGGTTCTGT 17 3 1 GGTCCGGCGG 0.897921 -125 ATAGGCCATGGGCCAGCGGGA 18 2 0 GGCCAGCGGG 0.956518 -299 GCAGCTGTATGGCCTGTTGCATGGGCCCAC 18 33 0 GGCCTGTTGC 0.520033 -268 CCCACGGCGAGGCGGCGCGGGAGGATAAAG 18 64 0 GGCGGCGCGG 0.979 -237 CGCGCCGCCTCGCCGTGGGCTGTTGTTGTT 18 75 1 CGCCGTGGGC 0.890932 -226 CAGCAATCCTCGCGCTCTTGCCCGCAAACG 18 123 1 CGCGCTCTTG 0.522877 -178 GATTTCCACCCGTTTGCGGGCAAGAGCGCG 18 133 0 CGTTTGCGGG 0.409715 -168 AATCGGTGTTCGCCCGCGGCGTACAGCCGC 18 159 1 CGCCCGCGGC 0.936864 -142 TCGACTTCGACGTCAGCTGGGAGGCCAACT 18 250 1 CGTCAGCTGG 0.778475 -51 TCAGCTGGGAGGCCAACTGGGCCTGGACCG 18 262 1 GGCCAACTGG 0.850167 -39 TGGATGGATAGGCCGACCCGG 19 2 0 GGCCGACCCG 0.913673 -299 CGTGCAGCTGCGCGACCTGGTCAAATTTCT 19 67 0 CGCGACCTGG 0.917599 -234 GCGGGTTCTTGGCGGCGGTCACGGTGACAT 19 111 0 GGCGGCGGTC 0.555557 -190 GCCAAGAACCCGCGCCCCGATCTGCGAATC 19 128 1 CGCGCCCCGA 0.699728 -173 TCGCGCTGGTGGCTCGGCGGCACATCGACC 19 156 1 GGCTCGGCGG 0.952253 -145 CTGCAGCTGTGGCTGTCGGCCTTGACGCCG 19 196 1 GGCTGTCGGC 0.816214 -105 TGCAGATACAGGTGGGCTGGGTTTACGGCG 19 221 0 GGTGGGCTGG 0.934309 -80 CAGATCCGGTCGCCGGCTGCAGATACAGGT 19 238 0 CGCCGGCTGC 0.982391 -63 TCTTCTCGAAGGTCTGCTGGAACGGATGTC 20 12 1 GGTCTGCTGG 0.78207 -25 AGCCGCCGTCGGTCAGCCCCGCAGG 21 6 0 GGTCAGCCCC 0.560028 -99 CAAATCCCAACGTGGTGTGGCTCATGAGGA 22 79 1 CGTGGTGTGG 0.70407 -30 GGCGTGGTCCTTCGGGTTCC 23 1 1 GGCGTGGTCC 0.801126 -90 GCACCCGTCCTCTCGCACTCGTTGT 23 76 0 CGTCCTCTCG 0.475363 -15 GGCCGCTAGGGGCCCGCGCGGGCTGCTAGT 24 29 0 GGCCCGCGCG 0.519925 -254 GCACAACTCCGGCGGTCTCAACTGGCCCTT 24 63 0 GGCGGTCTCA 0.475301 -220 CGGTCATGAGCGCCAGCGTCAAGCCCCGGC 24 136 1 CGCCAGCGTC 0.466336 -147 GTCAAGCCCCGGCTTGCTGGCCGGCAACCC 24 153 1 GGCTTGCTGG 0.890548 -130 ACCCTCCAACCGCGGTGGGGTGCCCCGGGT 24 179 1 CGCGGTGGGG 0.923065 -104 GAGTAGCCATCGCCGGCTGCGCGGCAAGCG 24 221 1 CGCCGGCTGC 0.982391 -62 GGCGGACCCGCGCTTGCCGCGCAGCCGGCG 24 231 0 CGCTTGCCGC 0.825718 -52 GGCCCGTCATGGCGGACCCGCGCTTGCCGC 24 241 0 GGCGGACCCG 0.902598 -42 TTCCCCGTCTGGTCAGGGGCCCGTCATGGC 24 258 0 GGTCAGGGGC 0.583815 -25 TAAGTCAGGTGGTCGTGTGCCAATTGCGCA 25 65 1 GGTCGTGTGC 0.655654 -236 TGTCTGGATCGGCCGGGGGAAATGCCGCCG 25 134 1 GGCCGGGGGA 0.83501 -167 GGGGAAATGCCGCCGCTTCGGTCCCGTTTA 25 149 1 CGCCGCTTCG 0.58573 -152 GCGGGATCGGGGCGGGCGCGATATTTGCGG 25 201 0 GGCGGGCGCG 0.538847 -100 AGAATCTTTCCGCGGGCGGGTGAGTCACTG 25 230 0 CGCGGGCGGG 0.970442 -71 TCCACCGTGCCGCTCGGTCCAATAGAATCT 25 253 0 CGCTCGGTCC 0.761517 -48 CCTCCCAATCGGCCTCGTGCCGCTGCAGAC 26 13 1 GGCCTCGTGC 0.846822 -56 ACCGGCAGTAGGCTGCGTGC 26 59 1 GGCTGCGTGC 0.884998 -10 CCGCGATACAGGCCCCGCCGC 27 2 0 GGCCCCGCCG 0.902888 -61 GGGCCTGTATCGCGGTCCGCAGCCTATCCC 27 17 1 CGCGGTCCGC 0.943511 -46 GGACGGACAACGCGATCCGG 27 53 1 CGCGATCCGG 0.88497 -10 ********** Masking position 2 Map Score: 123.163 Number of sites scoring better than the average of aligned sites = 116334 Number in coding regions = 108453 Number in noncoding regions = 7881 Number of orfs with sites within 600 bp upstream = 1767 Fraction of orfs with sites within 600 bp upstream = 0.28381 Motif number 2 TTCGTGACGACCCAGCCACGCAGCGC 1 7 0 CCCAGCCACG 0.463918 -294 CCGAAGCTGTCCGGTCCGCGCAGGGTTCGT 1 56 1 CCGGTCCGCG 0.821737 -245 CAGGGTTCGTCGCTGCCGCGAGCCAGGCGA 1 76 1 CGCTGCCGCG 0.870697 -225 CATACCTATTCGGGTGGCGGCAACCATGTC 1 113 1 CGGGTGGCGG 0.454484 -188 GCAACCATGTCGGAGCCGGATGGATGGCTA 1 132 1 CGGAGCCGGA 0.818904 -169 CAGTTGCCCCCACCTCCTCATAGCAAAAGT 1 203 1 CACCTCCTCA 0.376536 -98 AGCAAAAGTACACAGGCAGATGTGAGCGGA 1 224 1 CACAGGCAGA 0.277167 -77 GGGGTCAGCGCCAGGCGGTGGTGGC 5 6 1 CAGCGCCAGG 0.924091 -197 GACCCCCATCCAGTGCCGCGTGTGACTTCC 5 60 1 CAGTGCCGCG 0.922585 -143 GCTTCTGCATCGGGGCCGGAAGTCACACGC 5 77 0 CGGGGCCGGA 0.741748 -126 CCGGATTTGCCAGCGGCAGGTTGTTGTTCA 5 118 0 CAGCGGCAGG 0.939346 -85 CGGCGCCAGGGGTTCCGGAG 6 1 1 CGGCGCCAGG 0.938552 -85 GATCCACCGCCCGCTCCGGAACCCCTGGCG 6 14 0 CCGCTCCGGA 0.842971 -72 GGATCTCGTCTGGCTGGGCGGTCGGAGCTC 6 39 1 TGGCTGGGCG 0.359782 -47 GGTCGGAGCTCACCCGCACACAATAGGGTG 6 58 1 CACCCGCACA 0.53061 -28 TTGGCTGAGCCAGAGGCTCAGCCGCTTCGT 7 65 1 CAGAGGCTCA 0.347104 -236 AGTTGTCATTTCGCCGCGCGACGTGTTGAA 7 172 1 TCGCCGCGCG 0.557384 -129 CGATCAGCGACGGCGCCCCGGTGGAGGTCG 7 231 1 CGGCGCCCCG 0.572628 -70 TCGTGACGCCAGCGCAGCTAATCGCG 7 285 0 CGCCAGCGCA 0.756587 -16 TCGTCTCAGGCGCCTGCCGGCCAGGCACAC 8 30 0 CGCCTGCCGG 0.900258 -27 GCGGCGCGCCTGCCTGCGCGA 9 2 0 TGCCTGCGCG 0.673758 -200 CAAACAATTACGGCAGGCGGCCAGTGCCGC 9 47 1 CGGCAGGCGG 0.455752 -155 GGCAGGCGGCCAGTGCCGCACAGGTCGTGG 9 58 1 CAGTGCCGCA 0.805684 -144 CCATTGGGCCCCGTGGCTCATCTCACCGCC 9 96 1 CCGTGGCTCA 0.408087 -106 TGGCTCATCTCACCGCCGGGCGTTCCGGTG 9 109 1 CACCGCCGGG 0.962497 -93 GTGGGCAGTGCAGTCCCGGA 10 1 0 CAGTCCCGGA 0.536791 -31 CGGACGGTCGGGTGGGCAGTGCAGTCCC 10 14 0 CGGGTGGGCA 0.469359 -18 GCCCAACCACCGCGTCGCATTGGGACA 11 8 1 CACCGCGTCG 0.467072 -199 GGCGGCACGCCATCGCCGGGCTCGCTACCC 11 38 0 CATCGCCGGG 0.491744 -169 GATGGCGTGCCGCCAGCGCGCCGGTTGATG 11 54 1 CGCCAGCGCG 0.893598 -153 TGTTAAAATTCACCGCGGCGTCGATCTGAG 11 150 1 CACCGCGGCG 0.814867 -57 GCCTAGGGCGCACTGGCGCACCGGCAGCCC 12 26 1 CACTGGCGCA 0.752283 -68 ACTGGCGCACCGGCAGCCCGCCGAGATGGG 12 37 1 CGGCAGCCCG 0.856897 -57 TCGCTGTCAACGCAGCCCCATCTCGGCGGG 12 53 0 CGCAGCCCCA 0.538523 -41 GACTGGGCAGTGGCTGGCAAACAGCTG 14 8 1 CAGTGGCTGG 0.66502 -293 GCCCCAAACGCGGGTGCTCAGCATCATCGG 14 72 0 CGGGTGCTCA 0.459912 -229 GGATCACTCGCGGTTGGGCGACCTATCGCG 14 194 0 CGGTTGGGCG 0.576856 -107 TCGCAACTCGCAGTGCCGGGGATCACTCGC 14 213 0 CAGTGCCGGG 0.912627 -88 CGACGACTGGTGGCGGCAGGTGGCGTCGCA 14 238 0 TGGCGGCAGG 0.683868 -63 ACCGGTTGAGCAGGTCCGGAAAGCCGAAAT 14 278 1 CAGGTCCGGA 0.67908 -23 CCCCGCCGGCCGACGATGCGGGC 15 4 1 CGCCGGCCGA 0.855783 -131 CACAGGCCTTCCGGCCCGCATCGTCGGCCG 15 17 0 CCGGCCCGCA 0.500222 -118 GTGGTGGGCGTACCCCCGCATACGGGGGAG 15 44 1 TACCCCCGCA 0.239742 -91 GCCGAACGCCCCGTGGGGGGAACCCGCCCA 15 106 1 CCGTGGGGGG 0.638475 -29 GTGGGGGGAACCCGCCCAGGAGCGCCA 15 118 1 CCCGCCCAGG 0.337955 -17 AGCCGCTCTACGCCGCCAGGAGAAATTTCA 16 45 1 CGCCGCCAGG 0.884929 -21 CGGGTCCGGCGGCCGGTTCTGTACGG 17 7 1 CGGCGGCCGG 0.767435 -121 CGGTTCTGTACGGGTCCTGGACAGGTGCTG 17 24 1 CGGGTCCTGG 0.627964 -104 GGGTCCTGGACAGGTGCTGGACGATCCCTT 17 35 1 CAGGTGCTGG 0.536416 -93 TCCCGCTGGCCCATGGCCTATAG 18 4 1 CGCTGGCCCA 0.689434 -297 TATCCTCCCGCGCCGCCTCGCCGTGGGCTG 18 67 1 CGCCGCCTCG 0.889678 -234 CGGCTGTACGCCGCGGGCGAACACCGATTT 18 158 0 CCGCGGGCGA 0.542237 -143 CGGCGTACAGCCGCCGCGCACTCACGAGTC 18 175 1 CCGCCGCGCA 0.856463 -126 GGATGGCGTGCAGCTGCGCGACCTGGTCAA 19 73 0 CAGCTGCGCG 0.962498 -228 CGCCAAGAACCCGCGCCCCGATCTGCGAAT 19 127 1 CCGCGCCCCG 0.572376 -174 GCCGCCGAGCCACCAGCGCGATTCGCAGAT 19 147 0 CACCAGCGCG 0.828561 -154 GCTGGTGGCTCGGCGGCACATCGACCTCAA 19 160 1 CGGCGGCACA 0.918399 -141 CCGACAGCCACAGCTGCAGACCCGCTTGAG 19 185 0 CAGCTGCAGA 0.625172 -116 ATCCGGTCGCCGGCTGCAGATACAGGTGGG 19 235 0 CGGCTGCAGA 0.755754 -66 ACCGGATCTGCCCCTCCCGGAACAAGCGGC 19 258 1 CCCCTCCCGG 0.768517 -43 CGCCGTCGGTCAGCCCCGCAGG 21 3 0 CAGCCCCGCA 0.877832 -102 TTACTAGCAGCCCGCGCGGGCCCCTAGCGG 24 27 1 CCCGCGCGGG 0.480186 -256 CGCGGGCCCCTAGCGGCCGGTAAAGGGCCA 24 41 1 TAGCGGCCGG 0.685794 -242 AGCCCCGGCTTGCTGGCCGGCAACCCTCCA 24 157 1 TGCTGGCCGG 0.297976 -126 ACCCGGGGCACCCCACCGCGGTTGGAGGGT 24 179 0 CCCCACCGCG 0.755142 -104 TAGCCATCGCCGGCTGCGCGGCAAGCGCGG 24 224 1 CGGCTGCGCG 0.976781 -59 CCCGTCATGGCGGACCCGCGCTTGCCGCGC 24 239 0 CGGACCCGCG 0.799633 -44 CCCGTCTGGTCAGGGGCCCGTCATGGCGGA 24 255 0 CAGGGGCCCG 0.897204 -28 TTGTCTGGATCGGCCGGGGGAAATGCCGCC 25 133 1 CGGCCGGGGG 0.61093 -168 TGACCAGTGACGCAGCCGCAAATATCGCGC 25 186 1 CGCAGCCGCA 0.745577 -115 CACTGCGGGATCGGGGCGGGCGCGATATTT 25 205 0 TCGGGGCGGG 0.49625 -96 AGAATCTTTCCGCGGGCGGGTGAGTCACTG 25 230 0 CGCGGGCGGG 0.54737 -71 CGCGCGTCTGCAGCGGCACGAGGCCGATTG 26 18 0 CAGCGGCACG 0.946451 -51 CGTGCCGCTGCAGACGCGCGATCAGACCTC 26 28 1 CAGACGCGCG 0.765756 -41 GTTGTCCGTCCAGCTCCGGGATAGGCTGCG 27 34 0 CAGCTCCGGG 0.946461 -29 ********** Masking position 1 Map Score: 89.7946 Number of sites scoring better than the average of aligned sites = 103755 Number in coding regions = 96955 Number in noncoding regions = 6800 Number of orfs with sites within 600 bp upstream = 1692 Fraction of orfs with sites within 600 bp upstream = 0.271764 Motif number 3 GGTCCGCGCAGGGTTCGTCGCTGCCGCGAGCCAGG 1 68 1 GGTGTGCGCC 0.62197 -233 ATCCGGCTCCGACATGGTTGCCGCCACCCGAATAG 1 118 0 GCTGTGCGCC 0.843833 -183 GTTATCAGGTCACTCAGTTGCCCCCACCTCCTCAT 1 189 1 CCCGTGCCCC 0.739306 -112 GCGGCGTGAGCACGCCGTTTGGTTGG 2 2 1 CGGGACAGCC 0.607055 -49 CTTTCCACGTGGCCCACTATATACCCTATAGGGGT 4 117 0 GCCCTTAACC 0.297511 -32 GGGTCAGCGCCAGGCGGTGGTGGCCATTCGCCATC 5 12 1 CGCGTGTGCC 0.586627 -191 GGGGTCAGCGGTCACCGGCGATGGCGAATGGCCAC 5 31 0 GCCGGGAGGC 0.480106 -172 CCAGTGCCGCGTGTGACTTCCGGCCCCGATGCAGA 5 69 1 GGGCTCCGCC 0.970151 -134 AAGCGGCTGAGCCTCTGGCTCAGCCAACCCCGCGA 7 57 0 GCCGGTCGCC 0.58152 -244 CAGCGACGGCGCCCCGGTGGAGGTCGTCGAGTCTG 7 235 1 GCCGTGAGTC 0.901407 -66 GACGGAGCGCGTGTGCCTGGCCGGCAGGCGCCTGA 8 20 1 GGGCTGCGGC 0.903813 -37 CTAAATTGCGGCGCGCCTGCCTGCGCGA 9 4 0 GGGCTCCGCG 0.579316 -198 CACGACCTGTGCGGCACTGGCCGCCTGCCGTAATT 9 52 0 GGCCTGCGCC 0.992577 -150 GCACGCCATCGCCGGGCTCGCTACCCTGTCCCAAT 11 29 0 GCGCTGCACC 0.863083 -178 CCCATCAACCGGCGCGCTGGCGGCACGCCATCGCC 11 51 0 GCCCTGCGCA 0.738595 -156 AGGGCGCACTGGCGCACCGGCAGCCCGCCGAGATG 12 30 1 GCCCCGCGCC 0.963717 -64 GCCGAGATGGGGCTGCGTTGACAGCGATAGGGAAG 12 56 1 GCGGTGAAGC 0.264664 -38 GACTGGGCAGTGGCTGGCAAACAGCTGA 14 4 1 TGCGTGCGGC 0.255677 -297 ACCCGCGTTTGGGGCACTAGCAGCCACGATGATCC 14 87 1 GGCCTGCGCC 0.992676 -214 ACTGCGAGTTGCGACGCCACCTGCCGCCACCAGTC 14 229 1 GGCCCCCGCC 0.909012 -72 TGCGGGGGTACGCCCACCACAGGCCTTCCGGCCCG 15 29 0 CCCCCCAGCC 0.677066 -106 CCCCGCATACGGGGGAGAGGCGGCCTGACAGGGCC 15 57 1 GGGGAGCGCC 0.729803 -78 ACAGGGCCAGCTCACAATTCAGGCCGAACGCCCCG 15 84 1 CCCATCAGCC 0.471932 -51 TGGCGCTCCTGGGCGGGTTCCCCCCACGGGGCGTT 15 110 0 GGGGTCCCCC 0.594917 -25 CTGTTGCATGGGCCCACTATAGGCCATGGGCCAGC 18 15 0 GCCCTTAGCC 0.87119 -286 CGTGAGTGCGCGGCGGCTGTACGCCGCGGGCGAAC 18 166 0 CGGCTTAGCC 0.576309 -135 CATGACCGTGCCCACGGATGCAGCCATCGACTTCG 18 224 1 CCCGAGCGCC 0.938413 -77 CCCAGTTGGCCTCCCAGCTGACGTCGAAGTCGATG 18 248 0 CCCGCGAGTC 0.402508 -53 ACGCCCAACAGTGTCGGTCCAGGCCCAGTTGGCCT 18 271 0 GGCGTCAGCC 0.958727 -30 TGACCAGGTCGCGCAGCTGCACGCCATCCATGGCA 19 74 1 GGACTCAGCC 0.417483 -227 ATGGCAGAATGTCACCGTGACCGCCGCCAAGAACC 19 103 1 GCCGTACGCC 0.87334 -198 CACAGCTGCAGACCCGCTTGAGGTCGATGTGCCGC 19 172 0 GCCCTGAGTC 0.905792 -129 AGCTGTGGCTGTCGGCCTTGACGCCGTAAACCCAG 19 200 1 GCGCTGAGCC 0.980607 -101 TGTTCCGGGAGGGGCAGATCCGGTCGCCGGCTGCA 19 247 0 GGCGACCGTC 0.610473 -54 GCCGACCTAGGACGCGCTAAACGCCGCTTGTTCCG 19 275 0 GCCCTAAGCC 0.783791 -26 CGCTCTTGCAGTCACTGTAGCCGCCGTCGGTCAGC 21 19 0 GCCGTGCGCC 0.993516 -86 CAGCCCGCGCGGGCCCCTAGCGGCCGGTAAAGGGC 24 34 1 GGCCTGCGCC 0.992592 -249 GGCCGGTAAAGGGCCAGTTGAGACCGCCGGAGTTG 24 55 1 GGCGTGAACC 0.802139 -228 TTTGAGTTGGCACTGAGTAGCTGCCATGCGCTAGG 24 93 1 CCGGTGCGCC 0.973251 -190 TGGCGCTCATGACCGACTCGAAGCCTAGCGCATGG 24 116 0 GCGCTGAGCC 0.960272 -167 TTGGAGGGTTGCCGGCCAGCAAGCCGGGGCTTGAC 24 153 0 GCGCACAGCC 0.583496 -130 TCATGGCGGACCCGCGCTTGCCGCGCAGCCGGCGA 24 230 0 CCCCTGCGCG 0.734531 -53 TGGATCGGCCGGGGGAAATGCCGCCGCTTCGGTCC 25 138 1 GGGAAGCGCC 0.66359 -163 ACGGGGTCTGACCAGTGACGCAGCCGCAAATATCG 25 178 1 ACGGAGCGCC 0.401344 -123 CGGCACGGTGGAGTGACAGGAGGTCGCTACTGTAG 25 271 1 GGGCAGAGTC 0.601206 -30 CGCGCGTCTGCAGCGGCACGAGGCCGATTGGGAGG 26 13 0 CGGCAGAGCC 0.817837 -56 ACGCAGCCTACTGCCGGTCGAGGTCTGATCGCGCG 26 42 0 CGCGTGAGTC 0.735527 -27 GCGGCGGGGCCTGTATCGCGGTCCGCAGCCTAT 27 9 1 GCGATGCGTC 0.475704 -54 * * * ** ** *** Masking position 15 Map Score: 61.7681 Number of sites scoring better than the average of aligned sites = 36969 Number in coding regions = 35051 Number in noncoding regions = 1918 Number of orfs with sites within 600 bp upstream = 993 Fraction of orfs with sites within 600 bp upstream = 0.159492 Motif number 4 GTGATCATCAACCGTTGCGTACTGCCCGAT 4 61 0 ACCGTTGCGT 0.7235 -88 ACCCCCATCCAGTGCCGCGTGTGACTTCCG 5 61 1 AGTGCCGCGT 0.397885 -142 GGAGGTGATGCTTGTTGGGTTTACCGGATT 5 141 0 CTTGTTGGGT 0.838273 -62 TGCGGTGCGCCCGGTTGGCCAGGAGTATCT 5 178 0 CCGGTTGGCC 0.628628 -25 TGGATCTCGTCTGGCTGGGCGGTCGGAGCT 6 38 1 CTGGCTGGGC 0.796167 -48 CGGCGTAGGAAGTGTTGGGCATGACTGCAC 7 117 1 AGTGTTGGGC 0.788219 -184 GTGCCTTCAACACGTCGCGCGGCGAAATGA 7 177 0 CACGTCGCGC 0.601918 -124 TGGTCCAAGTCTTGTTGCGCGATTAGCTGC 7 268 1 CTTGTTGCGC 0.936565 -33 CGGACGGTCGGGTGGGCAGTGCA 10 19 0 ACGGTCGGGT 0.817584 -13 ATGCGACGCGGTGGTTGGGC 11 1 0 GTGGTTGGGC 0.702938 -206 GCCCAACCACCGCGTCGCATTGGGACAGGG 11 11 1 CGCGTCGCAT 0.302741 -196 ATAGGGAAGCCTGGTTGCATAG 12 82 1 CTGGTTGCAT 0.63538 -12 CACGATGATCCTTGTTGGGTTGCACCGCGG 14 111 1 CTTGTTGGGT 0.838273 -190 GAAAATTGGCAGGGTTGCGTTGACGCAACC 14 151 1 AGGGTTGCGT 0.894344 -150 GTGTCGCGCCATGGTTGCGTCAACGCAACC 14 163 0 ATGGTTGCGT 0.857065 -138 ACCTATCGCGCGTGTCGCGCCATGGTTGCG 14 174 0 CGTGTCGCGC 0.938312 -127 GGGATCACTCGCGGTTGGGCGACCTATCGC 14 195 0 GCGGTTGGGC 0.810234 -106 CCGTCGTCGACCGGTTGAGCAGGTCCGGAA 14 269 1 CCGGTTGAGC 0.733878 -32 AGCTGTATGGCCTGTTGCATGGGCCCACTA 18 31 0 CCTGTTGCAT 0.60101 -270 CTGGACCGACACTGTTGGGCGTAGCAG 18 284 1 ACTGTTGGGC 0.826303 -17 TCCATCCAGGCTTGTTGCGTAGTTTTGATC 19 28 1 CTTGTTGCGT 0.901297 -273 GAAATTTGACCAGGTCGCGCAGCTGCACGC 19 68 1 CAGGTCGCGC 0.862107 -233 GCGAGGATGACGGGTCGCGTAGGGAACCCG 23 23 0 CGGGTCGCGT 0.951543 -68 GTAGCCATCGCCGGCTGCGCGGCAAGCGCG 24 223 1 CCGGCTGCGC 0.925462 -60 GCGTTATCGTACTGTTGCGCAATTGGCACA 25 80 0 ACTGTTGCGC 0.893398 -221 CCGGATCGCGTTGTCCGTCCA 27 52 0 CGGATCGCGT 0.384956 -11 ********** Masking position 7 Map Score: 23.9936 Number of sites scoring better than the average of aligned sites = 9954 Number in coding regions = 9227 Number in noncoding regions = 727 Number of orfs with sites within 600 bp upstream = 571 Fraction of orfs with sites within 600 bp upstream = 0.0917122 Motif number 5 TCGTGACGACCCAGCCACGCAGCGC 1 6 0 CCAGCCACGC 0.658819 -295 CGAAGCTGTCCGGTCCGCGCAGGGTTCGTC 1 57 1 CGGTCCGCGC 0.955933 -244 GTCGCTGCCGCGAGCCAGGCGACTGGGCGC 1 84 1 CGAGCCAGGC 0.886583 -217 TGCTATGAGGAGGTGGGGGCAACTGAGTGA 1 198 0 AGGTGGGGGC 0.616763 -103 CCCTCTCGCTCGGTCGTTGCTCGGCTCAAT 1 274 0 CGGTCGTTGC 0.445793 -27 CAGCGCCAGGCGGTGGTGGCCATTCGCCAT 5 16 1 CGGTGGTGGC 0.95008 -187 TCGCCATCGCCGGTGACCGCTGACCCCCAT 5 39 1 CGGTGACCGC 0.465864 -164 CAAGGTGCGGTGCGCCCGGTTGGCCAG 5 186 0 CGGTGCGCCC 0.614999 -17 CCAGGGGTTCCGGAGCGGGCGGTGGATCTC 6 16 1 CGGAGCGGGC 0.882302 -70 TCTGGCTGGGCGGTCGGAGCTCACCCGCAC 6 47 1 CGGTCGGAGC 0.585841 -39 GCTAAGTTCGCGGGGTTGGCTGAGCCAGAG 7 50 1 CGGGGTTGGC 0.643938 -251 CACGTAGACTCGAGGCACGCAAGTTTGCGA 7 204 1 CGAGGCACGC 0.88496 -97 GACGGCGCCCCGGTGGAGGTCGTCGAGTCT 7 239 1 CGGTGGAGGT 0.552081 -62 CAGGCGCCTGCCGGCCAGGCACACGCGCTC 8 24 0 CCGGCCAGGC 0.920592 -33 GCGCCTGAGACGATGAACGC 8 47 1 CGATGAACGC 0.69171 -10 CACGCCATCGCCGGGCTCGCTACCCTGTCC 11 33 0 CCGGGCTCGC 0.858243 -174 TTTGCTACTCAGATCGACGCCGCGGTGAAT 11 157 0 AGATCGACGC 0.171769 -50 ACCGCGATACCCGAGGAGGCCCGC 11 193 1 CCGAGGAGGC 0.68847 -14 TTCCCTATCGCTGTCAACGCAGCCCCATCT 12 60 0 CTGTCAACGC 0.233149 -34 GCGTGTCGCGCCATGGTTGCGTCAACGCAA 14 165 0 CCATGGTTGC 0.0832082 -136 CCTGCTCAACCGGTCGACGACGGCCGACGA 14 262 0 CGGTCGACGA 0.263989 -39 CGCCGGCCGACGATGCGGGCCGGAAGGCCT 15 14 1 CGATGCGGGC 0.908343 -121 GGGAACCCGCCCAGGAGCGCCA 15 123 1 CCAGGAGCGC 0.425992 -12 ACAACAGCCCACGGCGAGGCGGCGCGGGAG 18 71 0 ACGGCGAGGC 0.306172 -230 GCGAGGATTGCTGTGGACGCCAGGAATCAA 18 106 0 CTGTGGACGC 0.528465 -195 GGGTGGAAATCGGTGTTCGCCCGCGGCGTA 18 152 1 CGGTGTTCGC 0.557639 -149 TCCGTGGGCACGGTCATGGCTGTTGATCTT 18 212 0 CGGTCATGGC 0.837734 -89 CCAACAGTGTCGGTCCAGGCCCAGTTGGCC 18 272 0 CGGTCCAGGC 0.970337 -29 GCCTATCCATCCATCCAGGCTTGTTGCGTA 19 19 1 CCATCCAGGC 0.72718 -282 ATTCGCAGATCGGGGCGCGGGTTCTTGGCG 19 127 0 CGGGGCGCGG 0.469382 -174 CTGCGAATCGCGCTGGTGGCTCGGCGGCAC 19 149 1 CGCTGGTGGC 0.413003 -152 CCGCTTGTTCCGGGAGGGGCAGATCCGGTC 19 257 0 CGGGAGGGGC 0.657273 -44 CCTGCGGGGCTGACCGACGGCGGC 21 5 1 CGGGGCTGAC 0.457277 -100 TCACAGGGATCCGAGCGGGCTACTTAGCCT 21 59 0 CCGAGCGGGC 0.722674 -46 TACTAGCAGCCCGCGCGGGCCCCTAGCGGC 24 28 1 CCGCGCGGGC 0.683579 -255 GGTCATCACCCGGGGCACCCCACCGCGGTT 24 186 0 CGGGGCACCC 0.635692 -97 GCCGCGCAGCCGGCGATGGCTACTCAACCT 24 216 0 CGGCGATGGC 0.512398 -67 GGTCAGGGGCCCGTCATGGCGGACCCGCGC 24 248 0 CCGTCATGGC 0.642178 -35 CCTGACCAGACGGGGAAAGCTC 24 271 1 CGGGGAAAGC 0.445613 -12 GCGAGCGACGCCACACCATGC 25 2 1 CGAGCGACGC 0.814715 -299 TTCCCCCGGCCGATCCAGACAAGACGGCAC 25 125 0 CGATCCAGAC 0.208583 -176 ACTGCGGGATCGGGGCGGGCGCGATATTTG 25 204 0 CGGGGCGGGC 0.977327 -97 AGCCTACTGCCGGTCGAGGTCTGATCGCGC 26 43 0 CGGTCGAGGT 0.470913 -26 CTGCGGACCGCGATACAGGCCCCGCCGC 27 9 0 CGATACAGGC 0.37375 -54 CGGAGCTGGACGGACAACGCGATCCGG 27 46 1 CGGACAACGC 0.550674 -17 ********** Masking position 1 Map Score: 38.1521 Number of sites scoring better than the average of aligned sites = 36737 Number in coding regions = 34417 Number in noncoding regions = 2320 Number of orfs with sites within 600 bp upstream = 1171 Fraction of orfs with sites within 600 bp upstream = 0.188082 Motif number 6 ACGACCGAGCGAGAGGGTGAGCTG 1 287 1 GAGAGGGTGA 0.923827 -14 TAGGGTGTAAGGGCGGATGATGGCGTGGTG 4 88 0 GGGCGGATGA 0.989418 -61 ACCCTATTGTGTGCGGGTGAGCTCCGACCG 6 57 0 GTGCGGGTGA 0.93981 -29 ACTATTTATCGGAAGGATGACGATA 17 113 1 GGAAGGATGA 0.959681 -15 GAGGCGGCGCGGGAGGATAAAGCGCAGCTG 18 56 0 GGGAGGATAA 0.876844 -245 GAGCCCCCAAAGAAGGATGAAAGCCCCT 21 87 1 AGAAGGATGA 0.700009 -18 TGGGTACTCTGCGAGGATGACGGGTCGCGT 23 33 0 GCGAGGATGA 0.933163 -58 GAGTGCGAGAGGACGGGTGC 23 81 1 GGACGGGTGC 0.902115 -10 ATCTTTCCGCGGGCGGGTGAGTCACTGCGG 25 227 0 GGGCGGGTGA 0.991761 -74 ********** Masking position 8 Map Score: 7.25383 Number of sites scoring better than the average of aligned sites = 647 Number in coding regions = 587 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 7 CGACATGGTTGCCGCCACCCGAATAGGTATG 1 113 0 GCCGCCACCG 0.459374 -188 GGGGTCAGCGCCAGGCGGTGGTGGCCA 5 7 1 AGCGCCAGGG 0.94179 -196 CGGATTTGCCAGCGGCAGGTTGTTGTTCATA 5 116 0 AGCGGCAGGT 0.876409 -87 CAAGGTGCGGTGCGCCCGGTTGGCCAGGAGT 5 182 0 TGCGCCCGGT 0.475399 -21 CGGCGCCAGGGGTTCCGGAGCG 6 2 1 GGCGCCAGGG 0.986335 -84 CGTCTGGCTGGGCGGTCGGAGCTCACCCGCA 6 45 1 GGCGGTCGGG 0.891925 -41 CATGTGACGAAGCGGCTGAGCCTCTGGCTCA 7 70 0 AGCGGCTGAC 0.112933 -231 GATCAGCGACGGCGCCCCGGTGGAGGTCGTC 7 232 1 GGCGCCCCGT 0.947885 -69 TCGTGACGCCAGCGCAGCTAATCGC 7 286 0 GACGCCAGCC 0.316229 -15 CGTGTGCCTGGCCGGCAGGCGCCTGAGACGA 8 29 1 GCCGGCAGGG 0.967881 -28 TCGCGCAGGCAGGCGCGCCGCAATT 9 5 1 GCAGGCAGGG 0.394169 -197 AATTACGGCAGGCGGCCAGTGCCGCACAGGT 9 52 1 GGCGGCCAGG 0.884113 -150 GATTCACCGGAACGCCCGGCGGTGAGATGAG 9 112 0 AACGCCCGGG 0.900712 -90 CGGACGGTCGGGTGGGCAGTGCA 10 19 0 GACGGTCGGT 0.409621 -13 CCGGCGCGCTGGCGGCACGCCATCGCCGGGC 11 47 0 GGCGGCACGC 0.949405 -160 ACGCATCAGAATCGGCCCGAGCGGAACCATC 11 101 0 ATCGGCCCGG 0.683456 -106 TACTCAGATCGACGCCGCGGTGAATTTTAAC 11 151 0 GACGCCGCGT 0.459442 -56 GCCCTAGGCTGACGGCTCGGGCTG 12 4 0 GACGGCTCGG 0.786132 -90 CATCTCGGCGGGCTGCCGGTGCGCCAGTGCG 12 34 0 GGCTGCCGGG 0.819961 -60 ACGCAACCATGGCGCGACACGCGCGATAGGT 14 173 1 GGCGCGACAG 0.167672 -128 GACGACTGGTGGCGGCAGGTGGCGTCGCAAC 14 236 0 GGCGGCAGGG 0.991938 -65 ACCGGTCGACGACGGCCGACGACTGGTGGCG 14 253 0 GACGGCCGAG 0.895361 -48 CCCCGCCGGCCGACGATGCGGGCCG 15 5 1 GCCGGCCGAG 0.864984 -130 ACGGGGGAGAGGCGGCCTGACAGGGCCAGCT 15 65 1 GGCGGCCTGC 0.680134 -70 ATTCAGGCCGAACGCCCCGTGGGGGGAACCC 15 100 1 AACGCCCCGG 0.861062 -35 GCCGCTCTACGCCGCCAGGAGAAATTTCAC 16 46 1 GCCGCCAGGG 0.946462 -20 CGGGTCCGGCGGCCGGTTCTGTACGGGT 17 8 1 GGCGGCCGGT 0.978867 -120 CCCACGGCGAGGCGGCGCGGGAGGATAAAGC 18 63 0 GGCGGCGCGG 0.944403 -238 GATTGCTGTGGACGCCAGGAATCAACAACAA 18 100 0 GACGCCAGGA 0.60104 -201 CTGGTGGCTCGGCGGCACATCGACCTCAAGC 19 161 1 GGCGGCACAC 0.744412 -140 ATCTGCAGCCGGCGACCGGATCTGCCCCTCC 19 244 1 GGCGACCGGT 0.6429 -57 GCGGGCCCCTAGCGGCCGGTAAAGGGCCAGT 24 42 1 AGCGGCCGGA 0.750797 -241 GGCCAGTTGAGACCGCCGGAGTTGTGCTTTG 24 66 1 GACCGCCGGG 0.688283 -217 ACCGCGGTGGGGTGCCCCGGGTGATGACCAG 24 187 1 GGTGCCCCGG 0.646482 -96 GCGAGCGACGCCACACCATGCACATCG 25 7 1 GACGCCACAC 0.358583 -294 ATCCAGACAAGACGGCACGCTCGTCCCAAAA 25 112 0 GACGGCACGT 0.874287 -189 TCTTGTCTGGATCGGCCGGGGGAAATGCCGC 25 131 1 ATCGGCCGGG 0.759542 -170 TATTGGACCGAGCGGCACGGTGGAGTGACAG 25 259 1 AGCGGCACGT 0.828773 -42 GCGCGTCTGCAGCGGCACGAGGCCGATTGGG 26 16 0 AGCGGCACGG 0.949695 -53 ********* * Masking position 3 Map Score: 57.3475 Number of sites scoring better than the average of aligned sites = 20847 Number in coding regions = 19431 Number in noncoding regions = 1416 Number of orfs with sites within 600 bp upstream = 869 Fraction of orfs with sites within 600 bp upstream = 0.139576 Motif number 8 CGGCAGCGACGAACCCTGCGCGGACCGGACAG 1 62 0 GAACCGCGCG 0.914704 -239 CTCGCTCTTCGTACCCTGCCCAGACATCGGGC 4 36 1 GTACCGCCCA 0.987113 -113 ACCCAGTAAGGTATCCGGCTCACCCAGAGTTG 7 145 1 GTACCGCTCA 0.921871 -156 TTGGGACAGGGTAGCGAGCCCGGCGATGGCGT 11 30 1 GTACGGCCCG 0.984831 -177 TTCACGCATCAGAATCGGCCCGAGCGGAACCA 11 103 0 AGATCGCCCG 0.82497 -104 CCCCGTGGGGGGAACCCGCCCAGGAGCGCCA 15 114 1 GGACCGCCCA 0.981987 -21 CCCATGGCCTATAGTGGGCCCATGCAACAGGC 18 20 1 ATATGGCCCA 0.618821 -281 TCAACAGCCATGACCGTGCCCACGGATGCAGC 18 216 1 TGACGGCCCA 0.735217 -85 TTGACGCCGTAAACCCAGCCCACCTGTATCTG 19 217 1 AAACCGCCCA 0.898921 -84 CCTAGGCTAAGTAGCCCGCTCGGATCCCTGTG 21 56 1 GTACCGCTCG 0.955978 -49 CAGATTACTAGCAGCCCGCGCGGGCCCCTAGC 24 23 1 GCACCGCGCG 0.900072 -260 GCAGCCGCAAATATCGCGCCCGCCCCGATCCC 25 197 1 ATACGGCCCG 0.959766 -104 CCCGCAGTGACTCACCCGCCCGCGGAAAGATT 25 226 1 CTCCCGCCCG 0.788014 -75 *** ** ***** Masking position 9 Map Score: 9.32333 Number of sites scoring better than the average of aligned sites = 2548 Number in coding regions = 2333 Number in noncoding regions = 215 Number of orfs with sites within 600 bp upstream = 205 Fraction of orfs with sites within 600 bp upstream = 0.0329264 Motif number 9 TTGTCTATTTTCGCAACTCCGCTCACATCT 1 241 0 TCGCAACTCC 0.814505 -60 TCTCGCTCGGTCGTTGCTCGGCTCAATTAT 1 271 0 TCGTTGCTCG 0.938427 -30 CGATCGCTCCTCGTCTGGATTTG 4 4 1 TCGCTCCTCG 0.982933 -145 GGATTTGGTCTCGCTCTTCGTACCCTGCCC 4 27 1 TCGCTCTTCG 0.940158 -122 CGGGGCGCCGTCGCTGATCGCAAACTTGCG 7 221 0 TCGCTGATCG 0.973844 -80 GCAGGTGGCGTCGCAACTCGCAGTGCCGGG 14 223 0 TCGCAACTCG 0.967969 -78 CAGGCATCAATCTCAGCTCGTCCAATCGAG 17 66 0 TCTCAGCTCG 0.915685 -62 CGGGTGGAAATCGGTGTTCGCCCGCGGCGT 18 151 1 TCGGTGTTCG 0.860377 -150 CCAGCGCGATTCGCAGATCGGGGCGCGGGT 19 135 0 TCGCAGATCG 0.967969 -166 ********** Masking position 8 Map Score: 6.78859 Number of sites scoring better than the average of aligned sites = 1042 Number in coding regions = 980 Number in noncoding regions = 62 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 10 GCCATCCATCCGGCTCCGACATGGTTGCCG 1 130 0 CGGCTCCGAC 0.58158 -171 GTGCCCGCTTTCCACGTGGCCCACT 4 134 0 CGCTTTCCAC 0.798067 -15 CAACAAGCATCACCTCCAACCCGCAGATAC 5 154 1 CACCTCCAAC 0.880754 -49 AGACGAGATCCACCGCCCGCTCCGGAACCC 6 20 0 CACCGCCCGC 0.918061 -66 TCATGCCCAACACTTCCTACGCCGTTGTAG 7 111 0 CACTTCCTAC 0.765105 -190 CCCAATGGGTCAGTGCCCACGACCTGTGCG 9 74 0 CAGTGCCCAC 0.961519 -128 GGGCACACCTTCCACTGAGGTTCAG 9 187 0 CACCTTCCAC 0.798067 -15 TCCGGGACTGCACTGCCCACCCGACCGTCC 10 11 1 CACTGCCCAC 0.986431 -21 GCTTCCCTATCGCTGTCAACGCAGCCCCAT 12 62 0 CGCTGTCAAC 0.796167 -32 GTTTGCCAGCCACTGCCCAGTC 14 3 0 CACTGCCCAG 0.918162 -298 GGCGTACAGCCGCCGCGCACTCACGAGTCG 18 176 1 CGCCGCGCAC 0.89375 -125 ACAGCCATGACCGTGCCCACGGATGCAGCC 18 219 1 CCGTGCCCAC 0.91485 -82 TCACCGTGACCGCCGCCAAGAACCCGCGCC 19 114 1 CGCCGCCAAG 0.82649 -187 ACGCCGTAAACCCAGCCCACCTGTATCTGC 19 220 1 CCCAGCCCAC 0.896789 -81 GGCAGCTACTCAGTGCCAACTCAAAGCACA 24 88 0 CAGTGCCAAC 0.877786 -195 GCACGCAGCCTACTGCCGGTCGA 26 56 0 CGCAGCCTAC 0.790951 -13 ********** Masking position 1 Map Score: 13.9985 Number of sites scoring better than the average of aligned sites = 6356 Number in coding regions = 5949 Number in noncoding regions = 407 Number of orfs with sites within 600 bp upstream = 344 Fraction of orfs with sites within 600 bp upstream = 0.0552522 Motif number 11 GCTGCCGCGAGCCAGGCGACTGGGCGCATA 1 87 1 GCCAGGCGAC 0.921785 -214 CTGCATCGGGGCCGGAAGTCACACGCGGCA 5 73 0 GCCGGAAGTC 0.811355 -130 CGCCCGGTTGGCCAGGAGTATCTGCGGGTT 5 171 0 GCCAGGAGTA 0.897553 -32 CGGCGCCAGGGGTTCCGGAGCGGG 6 5 1 GCCAGGGGTT 0.961149 -81 GGTGAGATGAGCCACGGGGCCCAATGGGTC 9 93 0 GCCACGGGGC 0.815283 -109 TCATCTCACCGCCGGGCGTTCCGGTGAATC 9 113 1 GCCGGGCGTT 0.852398 -89 AACTCGCAGTGCCGGGGATCACTCGCGGTT 14 209 0 GCCGGGGATC 0.952959 -92 GACGATGCGGGCCGGAAGGCCTGTGGTGGG 15 22 1 GCCGGAAGGC 0.648858 -113 GCTCTACGCCGCCAGGAGAAATTTCAC 16 49 1 GCCAGGAGAA 0.777267 -17 GTCCAATCGAGCAAGGGATCGTCCAGCACC 17 47 0 GCAAGGGATC 0.539201 -81 CCCACTATAGGCCATGGGCCAGCGGGA 18 8 0 GCCATGGGCC 0.81494 -293 TGCTGTGGACGCCAGGAATCAACAACAACA 18 98 0 GCCAGGAATC 0.879861 -203 TTTACCGGCCGCTAGGGGCCCGCGCGGGCT 24 35 0 GCTAGGGGCC 0.814943 -248 CGGCCAGCAAGCCGGGGCTTGACGCTGGCG 24 146 0 GCCGGGGCTT 0.702891 -137 TCCCCGTCTGGTCAGGGGCCCGTCATGGCG 24 257 0 GTCAGGGGCC 0.804451 -26 GTCTGGATCGGCCGGGGGAAATGCCGCCGC 25 135 1 GCCGGGGGAA 0.906128 -166 ********** Masking position 1 Map Score: 9.90576 Number of sites scoring better than the average of aligned sites = 4010 Number in coding regions = 3693 Number in noncoding regions = 317 Number of orfs with sites within 600 bp upstream = 290 Fraction of orfs with sites within 600 bp upstream = 0.0465789 Motif number 12 GCCATCCGAACTTGATGACCGCTTAGCCATC 1 154 0 CTTGATACCG 0.583697 -147 AACTGAGTGACCTGATAACCCAAGCCATCCG 1 177 0 CCTGATACCC 0.84874 -124 GACTACAGTACCTGAGGACCGGATTCACCGG 9 133 0 CCTGAGACCG 0.937866 -69 GTCCGATGATGCTGAGCACCCGCGTTTGGGG 14 70 1 GCTGAGACCC 0.976524 -231 GGGGGAACCCGCCCAGGAGCGCCA 15 121 1 GCCCAGAGCG 0.883989 -14 TCCAGGACCCGTACAGAACCGGCCGCCGGAC 17 14 0 GTACAGACCG 0.769425 -114 TCCAGCACCTGTCCAGGACCCGTACAGAACC 17 25 0 GTCCAGACCC 0.870243 -103 CGTGACCGCCGCCAAGAACCCGCGCCCCGAT 19 118 1 GCCAAGACCC 0.805257 -183 GCGTACCTAGGCTAAGTAGCCCGCTCGGATC 21 51 1 GCTAAGAGCC 0.791624 -54 TGCCAAACCTCCTCATGAGCCACACCACGTT 22 87 0 CCTCATAGCC 0.722414 -22 CGTCATCCTCGCAGAGTACCCAGTACTGTGC 23 41 1 GCAGAGACCC 0.930335 -50 TGACGCTGGCGCTCATGACCGACTCGAAGCC 24 126 0 GCTCATACCG 0.904445 -157 TACTCAACCTGGTCATCACCCGGGGCACCCC 24 195 0 GGTCATACCC 0.585547 -88 TGATGACCAGGTTGAGTAGCCATCGCCGGCT 24 208 1 GTTGAGAGCC 0.86037 -75 GCGTACTACAGTAGCGACCTCCTGTC 25 285 0 CTACAGAGCG 0.417874 -16 TCCGGGATAGGCTGCGGACCGCGATACAGGC 27 19 0 GCTGCGACCG 0.80496 -44 ****** **** Masking position 8 Map Score: 8.80745 Number of sites scoring better than the average of aligned sites = 3176 Number in coding regions = 2950 Number in noncoding regions = 226 Number of orfs with sites within 600 bp upstream = 193 Fraction of orfs with sites within 600 bp upstream = 0.030999 Motif number 13 GCTGGCAAATCCGGTAAACCCAACAAGCAT 5 134 1 CCGGTAAACC 0.735509 -69 ACCGCCCGCTCCGGAACCCCTGGCGCCG 6 9 0 CCGGAACCCC 0.947337 -77 TCTGGGTGAGCCGGATACCTTACTGGGTGC 7 143 0 CCGGATACCT 0.757906 -158 ACGCGCTCCGTCGGCATCCCG 8 2 0 TCGGCATCCC 0.889065 -55 TACCTGAGGACCGGATTCACCGGAACGCCC 9 126 0 CCGGATTCAC 0.812699 -76 ATTTTAACAACCGGTTACCCAGTTTTCACG 11 129 0 CCGGTTACCC 0.96975 -78 CACTGGCGCACCGGCAGCCCGCCGAGATGG 12 36 1 CCGGCAGCCC 0.95861 -58 CTATGCAACCAGGCTTCCCTATCGCTGTC 12 75 0 CAGGCTTCCC 0.848168 -19 TTGAGCAGGTCCGGAAAGCCGAAATCCA 14 283 1 CCGGAAAGCC 0.868627 -18 GCGCTCCTGGGCGGGTTCCCCCCACGGGGC 15 113 0 GCGGGTTCCC 0.727773 -22 GGCCTTGACGCCGTAAACCCAGCCCACCTG 19 213 1 CCGTAAACCC 0.804798 -88 GCGTGGTCCTTCGGGTTCCCTACGCGACCC 23 12 1 TCGGGTTCCC 0.760805 -79 GGCTTGCTGGCCGGCAACCCTCCAACCGCG 24 163 1 CCGGCAACCC 0.988662 -120 CAGTGAGATACAGGTAACACCGATGTGCAT 25 28 0 CAGGTAACAC 0.362868 -273 ********** Masking position 3 Map Score: 7.60683 Number of sites scoring better than the average of aligned sites = 2779 Number in coding regions = 2571 Number in noncoding regions = 208 Number of orfs with sites within 600 bp upstream = 186 Fraction of orfs with sites within 600 bp upstream = 0.0298747 Motif number 14 ********** No masking Map Score: -3.26606e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: -3.26606e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0