AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00500_mtub_reg_100.orf -o00500_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ppp 88 ppp #2 Rv0019c 123 hypothetical protein Rv0019c #3 ssb 103 ssb #4 rpsR 41 rpsR #5 rplI 32 rplI #6 Rv0057 28 hypothetical protein Rv0057 #7 ctpA 131 ctpA #8 ctpB 143 ctpB #9 ctpI 300 ctpI #10 Rv0126 108 hypothetical protein Rv0126 #11 lpqI 300 lpqI #12 ctpH 51 ctpH #13 Rv0426c 200 hypothetical protein Rv0426c #14 echA6 26 echA6 #15 Rv0907 73 hypothetical protein Rv0907 #16 pknD 21 pknD #17 pstS 215 pstS #18 pgi 300 pgi #19 uvrD 296 uvrD #20 Rv0967 49 hypothetical protein Rv0967 #21 Rv0968 56 hypothetical protein Rv0968 #22 ctpV 55 ctpV #23 galU 100 galU #24 glgC 174 glgC #25 Rv1327c_glgP 30 Rv1327c: hypothetical protein Rv1327c, glgP: glgP #26 ctpD 241 ctpD #27 glgX 38 glgX #28 Rv1565c 98 hypothetical protein Rv1565c #29 Rv1566c 239 hypothetical protein Rv1566c #30 Rv1781c 263 hypothetical protein Rv1781c #31 Rv1993c 52 hypothetical protein Rv1993c #32 Rv1994c 156 hypothetical protein Rv1994c #33 ctpF 201 ctpF #34 Rv2975c 300 hypothetical protein Rv2975c #35 pgmA 69 pgmA #36 uvrD2 300 uvrD2 #37 Rv3202c 300 hypothetical protein Rv3202c #38 Rv3269 124 hypothetical protein Rv3269 #39 Rv3295 300 hypothetical protein Rv3295 #40 lhr 43 lhr #41 Rv3371 191 hypothetical protein Rv3371 #42 otsB2 41 otsB2 #43 Rv3488 300 hypothetical protein Rv3488 #44 Rv3489 81 hypothetical protein Rv3489 Motif number 1 CCCGCGCTGGCGACGATGCAGA 1 3 1 CGCGCTGGCG 0.596927 -86 CGCAGAGAAGCGGTGGGGGCGCGCCCCCAC 1 34 1 CGGTGGGGGC 0.972662 -55 CCCCCGCAAGCGGGTGGGGGTACCCCCCAC 1 66 0 CGGGTGGGGG 0.94499 -23 GATACTTTGACGGTGGTCGGCGCGGGTCAA 2 37 0 CGGTGGTCGG 0.677922 -87 CCGTCTGCTCCGGCCCCGCGCTGCCGAGCA 2 82 0 CGGCCCCGCG 0.51158 -42 GGTGCGGTTACGTAGGCTCGGCGAAGAAGA 3 42 1 CGTAGGCTCG 0.407886 -62 CGCCTGGGTTCGGCGGCTGGTCGTGTTCTT 3 68 0 CGGCGGCTGG 0.947855 -36 GAATGTCCAACGGAGAGTGCAAAATACC 5 15 1 CGGAGAGTGC 0.603023 -18 ACGCGGTGAACGCACCGGCGGATAGTCGTC 7 12 0 CGCACCGGCG 0.528358 -120 CTCACCTCACCGAAGCCGCCTGACGCGGTG 7 34 0 CGAAGCCGCC 0.853892 -98 CGCTCAACATCGGCGGCGGCATGACCAAGT 7 78 0 CGGCGGCGGC 0.990532 -54 GGCCCTCCTCGGATCGGCGTATTTGCACC 8 125 0 CGGATCGGCG 0.695463 -19 TCAGTGGATGCGGTGGGGTCCGTGAATCAG 9 17 0 CGGTGGGGTC 0.839762 -284 GCCTGGCTAACGGCTCACGGATCGAATCAG 9 43 0 CGGCTCACGG 0.601327 -258 GTTAGCCAGGCGTTGCCGCGTCGTTGGGAT 9 62 1 CGTTGCCGCG 0.776913 -239 CGTGACGCGCCGGTGGCGGGCACGTGAAAC 9 103 0 CGGTGGCGGG 0.981338 -198 CGGCGCGTCACGGGCCCGCCCGTACTCAAG 9 121 1 CGGGCCCGCC 0.930366 -180 AGATCCGACACGGCGTCTGCATTCATCGCT 9 153 1 CGGCGTCTGC 0.697604 -148 CTGCCTTCACCGGCGACCTCACCCGGCGAA 9 204 1 CGGCGACCTC 0.668443 -97 GGATACCACCCGCCGGCCGGCCAATTGGAT 10 20 1 CGCCGGCCGG 0.954685 -89 GCGGCAATCACGGCTGGCGCCAATCCAATT 10 42 0 CGGCTGGCGC 0.945814 -67 CACGATGCCACGCGCACGGGAGACGGAACT 10 83 0 CGCGCACGGG 0.812799 -26 CGGGTCGCGGGGCTAGCTAC 11 1 1 CGGGTCGCGG 0.895755 -300 GACGACGGATCGCCCCCGGGGAGTGGCGGT 11 63 1 CGCCCCCGGG 0.947119 -238 CTCCGAAGATCGCGGCCGCGCCCAGCAACA 11 121 1 CGCGGCCGCG 0.499404 -180 ACCACGCTTGCGGCGGCGGGCGCGACGATC 11 159 1 CGGCGGCGGG 0.98416 -142 ACCGATGAACCGGATCGTCGCGCCCGCCGC 11 171 0 CGGATCGTCG 0.612854 -130 TCCGGTTCATCGGTGGCTCCTCGACGGCTG 11 187 1 CGGTGGCTCC 0.815799 -114 GGCTCCTCGACGGCTGTGGGTGCGGCTTGA 11 201 1 CGGCTGTGGG 0.762284 -100 GCATACGCTCCGGGTTGGGGGGCCAGGCCC 11 259 0 CGGGTTGGGG 0.750645 -42 CAACCCGGAGCGTATGCGCCACCGTGACAG 11 272 1 CGTATGCGCC 0.568684 -29 GCGGCGTACGGCGGTAGTCGGCAG 13 5 1 CGTACGGCGG 0.620296 -196 GCAGTCGCGCCGCACGCGGCAGTTGCGCGT 13 31 1 CGCACGCGGC 0.945505 -170 AAGCCTGCCACGCCGCCCTGACTGAGACAA 13 60 0 CGCCGCCCTG 0.82701 -141 ACCCTGCATTCGCACCGCTGACGAGATTTC 13 111 0 CGCACCGCTG 0.598246 -90 CTCGTTAACCCGCACCCTGCATTCGCACCG 13 124 0 CGCACCCTGC 0.695894 -77 ATTAGCCGGGCGCTGCGGGGAA 15 3 0 CGCTGCGGGG 0.959137 -71 TTGATCGCCTCGGCTCGCCCCCTAGCACCA 15 32 0 CGGCTCGCCC 0.913758 -42 CGGCGCAGGGTACTACATGC 17 1 1 CGGCGCAGGG 0.874395 -215 TACTGAGGGTCGACGGCGCGCTTTGTCCAA 17 46 0 CGACGGCGCG 0.583436 -170 TCAGTATCAGCGGCCCCTCCTGAACGCTAG 17 70 1 CGGCCCCTCC 0.842668 -146 CGATGCACAACGGTGACGGCTCGAATACCG 17 123 1 CGGTGACGGC 0.906108 -93 GCTCGAATACCGACCCCGGGTCGGTGGCTC 17 141 1 CGACCCCGGG 0.903686 -75 GACCCCGGGTCGGTGGCTCGGCGACCACCG 17 152 1 CGGTGGCTCG 0.770615 -64 CACTCGCCACCGGTGGTCGCCGAGCCACCG 17 162 0 CGGTGGTCGC 0.618652 -54 CAACTCCTCTCGAGGGGGTCGTGGTGGCGG 17 195 0 CGAGGGGGTC 0.474451 -21 GTTGAACCGCCGTTGCGCCGCTTGGTACTT 18 31 0 CGTTGCGCCG 0.622398 -270 CACGCCAGTACGCCCAGGTGTGGGTTTCGC 18 71 0 CGCCCAGGTG 0.540525 -230 TGATCTGCAGCGGGTGCTGGGCGACGGTCA 18 123 1 CGGGTGCTGG 0.755495 -178 TGCTGGGCGACGGTCAGCGGCCTCGGCGGG 18 137 1 CGGTCAGCGG 0.75841 -164 TCAGCGGCCTCGGCGGGGGCCGAGGCCGCG 18 150 1 CGGCGGGGGC 0.988892 -151 CGGCGGGGGCCGAGGCCGCGAGAGCGCAGG 18 160 1 CGAGGCCGCG 0.509184 -141 GCCGCGAGAGCGCAGGCCCGCATCGCCGAG 18 174 1 CGCAGGCCCG 0.591159 -127 CCGCGACAAACGGCGAGTGCCGCCGAGCAC 18 214 1 CGGCGAGTGC 0.741149 -87 GGTCCGCTTCCGGATTCGGGGCTCGTCTCT 19 31 0 CGGATTCGGG 0.798728 -266 TAGCTGCTTTCGCAGAGCCCCGTGGTCCGC 19 54 0 CGCAGAGCCC 0.736532 -243 CCACGGGCACCGCTGGCCGGTACCCGTAGA 19 86 1 CGCTGGCCGG 0.946752 -211 GTGCTCAACGCGCAGCGCCGATTTTTCTAC 19 111 0 CGCAGCGCCG 0.514213 -186 ATGGCACACTCGGTTCGTGCTCAACGCGCA 19 127 0 CGGTTCGTGC 0.618804 -170 CAAGTTTTTGCGCGGGCGCGTCCGTTGATG 19 154 0 CGCGGGCGCG 0.507155 -143 GGCTATGCCGCGGTCCGCCGACTCGTCGCC 19 253 1 CGGTCCGCCG 0.52701 -44 GCCGACTCGTCGCCGCGCGGCGGTAAGTTT 19 269 1 CGCCGCGCGG 0.889492 -28 ATACCATGAACGGGTGAGGGATTAGGGGCA 20 26 1 CGGGTGAGGG 0.572624 -24 CGAGAAACACCGGAGTCCGGCGCTCG 21 7 0 CGGAGTCCGG 0.866469 -50 CGCGGATGCTCCTTTCGTATGT 21 45 0 CGGATGCTCC 0.670993 -12 TGGTCTCCAACGCGTCGGGGCGG 22 43 1 CGCGTCGGGG 0.899312 -13 TCGCGCGGGACGGCCGGGGCTGTGTCATCG 23 19 0 CGGCCGGGGC 0.978946 -82 GCTGTCCCGGCGCTCGCGCGGGACGGCCGG 23 32 0 CGCTCGCGCG 0.634104 -69 TCTTCGTTGGCGCTGTCCCGGCGCTCGCGC 23 43 0 CGCTGTCCCG 0.685382 -58 ACAGCGCCAACGAAGAGGCGGGCAATCAGC 23 57 1 CGAAGAGGCG 0.533553 -44 CACGATAACCCGCAGCGTGCTGATTGCCCG 23 75 0 CGCAGCGTGC 0.788818 -26 CACCGCACTACGGTGCGGGGT 24 2 0 CGGTGCGGGG 0.975314 -173 AGTGCGGTGACGGGGCGGCCCGCGTGGCGG 24 23 1 CGGGGCGGCC 0.931023 -152 CGGGGCGGCCCGCGTGGCGGGCCGAGGAGG 24 33 1 CGCGTGGCGG 0.852257 -142 GAGGAGGAGGCGGAGGCGGCACAGCACCCG 24 56 1 CGGAGGCGGC 0.982322 -119 CAGCACCCGTCGAACGGGGCCAAACACCTT 24 77 1 CGAACGGGGC 0.78216 -98 AACACCTTGACGGACAGCCCGTCAGAGCAG 24 99 1 CGGACAGCCC 0.710154 -76 AAGGGGAATCCGCCCCTGGCTACTGCTCTG 24 121 0 CGCCCCTGGC 0.680628 -54 TCAAACCTATCGGCCCCCGCAAACCACTGC 24 152 0 CGGCCCCCGC 0.967015 -23 CTCTTCATTGCGGAGGTGCCAG 26 3 0 CGGAGGTGCC 0.743893 -239 ACGGGTGAAGCGGCCGCTGGATCGCGATAA 26 50 0 CGGCCGCTGG 0.906119 -192 CCGCTTCACCCGTTTCGGGGTAACGCACCC 26 67 1 CGTTTCGGGG 0.577416 -175 TTCGGGGTAACGCACCCCGCCAGAATGGTT 26 80 1 CGCACCCCGC 0.903073 -162 CCAATTCAATCGCATACCGCAATGCAATCG 26 146 1 CGCATACCGC 0.600519 -96 CTGACGAATTCGCACCCCTGTCGTGAGGCC 26 216 1 CGCACCCCTG 0.638527 -26 TCCGGCGGCCTCACGACAGGGG 26 230 0 CGGCGGCCTC 0.89718 -12 CTCCCAAACCCGCCTCCTGCTTCCCGCTGC 28 32 1 CGCCTCCTGC 0.740905 -67 CGTGACCGGACGGTGACTGCCGCGCTCAAT 29 46 0 CGGTGACTGC 0.572782 -194 CAGCTATGGACGCGGCCGGCATCTGTTGTC 29 107 1 CGCGGCCGGC 0.965614 -133 TGCCACTGCGCGGATCCCCCAAGGATTCGT 30 63 1 CGGATCCCCC 0.886953 -201 GGCGAATGACCGAGTCCGCCTGTGGAACTG 30 117 1 CGAGTCCGCC 0.642725 -147 CAGATTCCTGCGCTCGCCCGCACACGGGTG 30 224 1 CGCTCGCCCG 0.563605 -40 CGCCCGCACACGGGTGCCGGACGCAAGATG 30 238 1 CGGGTGCCGG 0.92269 -26 CCGAGCCCGCCAGCTATCGGC 32 2 1 CGAGCCCGCC 0.727667 -155 AGCTTCCGGCCGCAGAGCCGCCAACTCACG 32 54 0 CGCAGAGCCG 0.494846 -103 CCGAGCAGATCGCACAGGCCC 33 2 0 CGCACAGGCC 0.721467 -200 GGGCTTTCCGCGCGGGTGGGCACCACCCGA 33 28 0 CGCGGGTGGG 0.711703 -174 AATCACGGTTCGGACGGGGCTTTCCGCGCG 33 44 0 CGGACGGGGC 0.961083 -158 TGGGCAACGTCGGGCCGGGCCAGCAGCGCT 33 73 1 CGGGCCGGGC 0.95425 -129 CAGGGACCTACGGTCCAGCGCTGCTGGCCC 33 89 0 CGGTCCAGCG 0.414973 -113 CCCTGCCTAACGGTCGCCGGTGTGGATCAG 33 138 0 CGGTCGCCGG 0.940341 -64 GCTCAACCGACGGTTGGCTCAACCCTGCCT 33 160 0 CGGTTGGCTC 0.506308 -42 AGCCAACCGTCGGTTGAGCGTCTGGCTGCG 33 171 1 CGGTTGAGCG 0.428686 -31 ACCGACTTGCCGAAGCCGGGGCCTTTCCCG 34 17 1 CGAAGCCGGG 0.90868 -284 AGGAGCTTGACGAATGGCCGCTGTGTGCGA 34 53 0 CGAATGGCCG 0.520907 -248 TACACGTAGGCGTCCCGGCCAGGTCGCCGG 34 97 0 CGTCCCGGCC 0.751811 -204 GACATGTCCGCGAAGGGCTGATCGTTTTGG 34 168 0 CGAAGGGCTG 0.42719 -133 TGTCAGCACCCGCCTTGGCCGGGAGAGCGG 34 194 1 CGCCTTGGCC 0.690955 -107 GCCGGGAGAGCGGCGTCGTGACCGTGCTGT 34 211 1 CGGCGTCGTG 0.761012 -90 TGGTTAGGCTCGGGGCGCGGGCTGGCGCGG 34 250 1 CGGGGCGCGG 0.908046 -51 CGGAGTTCGTCGGCTCGGTCAATGGCGGCA 36 31 0 CGGCTCGGTC 0.811858 -270 CGAACACAACCGTGCGGCCGCGGAGTTCGT 36 51 0 CGTGCGGCCG 0.479159 -250 GTAAGCGATTCGGTTGGCCGTGAGCGCTGT 36 95 1 CGGTTGGCCG 0.678573 -206 AGATGGTGAGCGCAGCGGTGATCATGACAC 36 163 1 CGCAGCGGTG 0.833378 -138 CCGCCCGGGTCGTCGCCGCGCTAGGTTAGC 36 193 0 CGTCGCCGCG 0.855866 -108 ACGACCCGGGCGGTGTGGCGGCTCGGCAGT 36 210 1 CGGTGTGGCG 0.844306 -91 TTGTTCATGTCGCACGCCCCACGGCGTGGC 36 239 1 CGCACGCCCC 0.880367 -62 GCACGCCCCACGGCGTGGCGACACGCCCGG 36 250 1 CGGCGTGGCG 0.873708 -51 TCTTCGTCGTCGGCGACCGGAACGACGAAG 37 29 1 CGGCGACCGG 0.937849 -272 GCTTGGTCGACGACGTCGGCTTCGCTGGCG 37 59 1 CGACGTCGGC 0.707103 -242 ACGTCGGCTTCGCTGGCGTCTCGGTCGCCG 37 71 1 CGCTGGCGTC 0.786413 -230 ACCTCAGCGGCGGCGCCGGCGACCGAGACG 37 87 0 CGGCGCCGGC 0.990023 -214 ATTTCGACGACGAAGCCGGGTTGGACACCG 37 120 0 CGAAGCCGGG 0.90868 -181 TCCACCGCATCGGCTTCGGGTATTTCGTCC 37 167 1 CGGCTTCGGG 0.882068 -134 CCGCCGCCTACGACCGCCGCCATGGTAGCC 37 203 1 CGACCGCCGC 0.818007 -98 CTGACAAGCTCGGATACTGGAGCTGGCAAG 37 259 0 CGGATACTGG 0.445476 -42 CGCAGGCCGCGTCCAGCAGG 38 1 1 CGCAGGCCGC 0.949518 -124 CTGATGCCTTCGCCTGCTGGACGCGGCCTG 38 13 0 CGCCTGCTGG 0.796121 -112 GGCTAGAAGTCGGATGAGGCGCGGCAGGTC 39 13 1 CGGATGAGGC 0.537231 -288 CAATCTCCAACGCATCGCCGACCTGCCGCG 39 32 0 CGCATCGCCG 0.539327 -269 TTGGAGACGTCGGCCGCGTCACGTTTGACG 39 59 1 CGGCCGCGTC 0.889496 -242 TCACGTTTGACGACGCGGTCGACGTTCCTA 39 77 1 CGACGCGGTC 0.644578 -224 GGCTTTGTCGCGAATCGGCGAAAGCTAGGA 39 102 0 CGAATCGGCG 0.620906 -199 TGCCGCGTATCGGCGACGGCTTTGTCGCGA 39 119 0 CGGCGACGGC 0.960307 -182 GCGACACCACCGGCTCCGCCAGATATCGCG 39 186 0 CGGCTCCGCC 0.959421 -115 CCGGTGGTGTCGCAGCAGGGACGTCGGGGC 39 203 1 CGCAGCAGGG 0.711403 -98 GTGGTTCTTTCGGTGGGGTGGGTCTGCCCC 39 228 0 CGGTGGGGTG 0.871048 -73 ACCACACGTTCGGCTAGGCGAGCAGGTGGT 39 259 0 CGGCTAGGCG 0.533745 -42 CGACAAAAACCGCCTACCGC 40 1 0 CGCCTACCGC 0.739138 -43 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 41 13 1 CGGCGGCCCG 0.515534 -179 TGTTCTTAACCGTTTGGGCCTTCTGCTTCC 41 115 1 CGTTTGGGCC 0.457763 -77 GCTTCCGGTGCGGTCCGGCGGACACTTATA 41 139 1 CGGTCCGGCG 0.57161 -53 GGTCGCAAAACGACGGTGGGGACTTGTC 41 174 1 CGACGGTGGG 0.575122 -18 TCAACGCCGACGGAGATGGCG 42 2 0 CGGAGATGGC 0.468455 -40 ATCAATCATTCGGTGGCGCGAAGTTCACCA 43 103 1 CGGTGGCGCG 0.734206 -198 GTCCCGGACACGCTCACGCGAACTACCTGC 43 135 1 CGCTCACGCG 0.560394 -166 AGTGCGAATTCGCCGCCGGCTACCCGCACC 43 235 1 CGCCGCCGGC 0.983435 -66 TGCGATTCTACGGGGTGCGGGTAGCCGGCG 43 248 0 CGGGGTGCGG 0.831018 -53 AAGCCGATATCGGCTTGGTCACCTGAGGTG 43 277 1 CGGCTTGGTC 0.418827 -24 CGATGGGTACCGTCGACGCGGT 44 3 0 CGTCGACGCG 0.671638 -79 CGGTACCCATCGCCGGGGCCAAACCGTGAC 44 21 1 CGCCGGGGCC 0.946011 -61 AAGCCAAGCCCGCATTGCGCTGCAGACGTC 44 51 0 CGCATTGCGC 0.467699 -31 ********** Masking position 2 Map Score: 197.15 Number of sites scoring better than the average of aligned sites = 115886 Number in coding regions = 108598 Number in noncoding regions = 7288 Number of orfs with sites within 600 bp upstream = 1686 Fraction of orfs with sites within 600 bp upstream = 0.2708 Motif number 2 CACTTGTGGGGGCGCGCCCCCACCGCTTCT 1 39 0 GGCGCGCCCC 0.521581 -50 CTCCCCCGCAAGCGGGTGGGGGTACCCCCC 1 68 0 AGCGGGTGGG 0.542074 -21 CCCACCCGCTTGCGGGGGAGA 1 78 1 TGCGGGGGAG 0.719728 -11 GCGCGGGTCAACCCCGGCAGCTTCGAGCCC 2 18 0 ACCCCGGCAG 0.8903 -106 TGCCGGGGTTGACCCGCGCCGACCACCGTC 2 29 1 GACCCGCGCC 0.76228 -95 TGCTCGGCAGCGCGGGGCCGGAGCAGACGG 2 82 1 CGCGGGGCCG 0.873908 -42 TCGGCCTGCCAGGCACTGGCTG 3 3 1 GGCCTGCCAG 0.369983 -101 GACGACTATCCGCCGGTGCGTTCACCGCGT 7 12 1 CGCCGGTGCG 0.741152 -120 CGGTGCGTTCACCGCGTCAGGCGGCTTCGG 7 25 1 ACCGCGTCAG 0.841388 -107 CCGCTCAACATCGGCGGCGGCATGACCAAG 7 79 0 TCGGCGGCGG 0.696967 -53 GGCGTATTTGCACCCGTCAGCCTACAAGTC 8 109 0 CACCCGTCAG 0.805719 -35 CGGTTTCACGTGCCCGCCACCGGCGCGTCA 9 101 1 TGCCCGCCAC 0.902217 -200 GCCCGCCACCGGCGCGTCACGGGCCCGCCC 9 112 1 GGCGCGTCAC 0.928028 -189 GCGCGTCACGGGCCCGCCCGTACTCAAGCT 9 123 1 GGCCCGCCCG 0.559345 -178 GGACTGCCTTCACCGGCGACCTCACCCGGC 9 201 1 CACCGGCGAC 0.621105 -100 CGCATACTTCGCCGGGTGAGGTCGCCGGTG 9 211 0 GCCGGGTGAG 0.809022 -90 TCCAATTGGCCGGCCGGCGGGTGGTATCCG 10 19 0 CGGCCGGCGG 0.492609 -90 AGCCGTGATTGCCGCGTGAGCCCCCGAGTT 10 57 1 GCCGCGTGAG 0.90411 -52 CCGTCTCCCGTGCGCGTGGCATCGTGGAAG 10 87 1 TGCGCGTGGC 0.617033 -22 ACCGTAGCTAGCCCCGCGACCCG 11 4 0 GCCCCGCGAC 0.900082 -297 GACGGATCGCCCCCGGGGAGTGGCGGTTTC 11 66 1 CCCCGGGGAG 0.814694 -235 TCTGTTGCTGGGCGCGGCCGCGATCTTCGG 11 123 0 GGCGCGGCCG 0.536447 -178 CGGATCGTCGCGCCCGCCGCCGCAAGCGTG 11 161 0 CGCCCGCCGC 0.517596 -140 GCTCCGGGTTGGGGGGCCAGGCCCACGCTT 11 253 0 GGGGGGCCAG 0.908123 -48 GAGTTGCTCAACGCCGCCAGA 12 2 0 ACGCCGCCAG 0.850728 -50 AGCCCGTGCGATGGATGCAG 12 42 0 AGCCCGTGCG 0.756256 -10 AGTCGCGCCGCACGCGGCAGTTGCGCGTTG 13 33 1 CACGCGGCAG 0.868756 -168 CTCAGTCAGGGCGGCGTGGCAGGCTTGCAT 13 64 1 GCGGCGTGGC 0.551052 -137 TAGCACCATTAGCCGGGCGCTGCGGGGAA 15 10 0 AGCCGGGCGC 0.66512 -64 TAATGGTGCTAGGGGGCGAGCCGAGGCGAT 15 29 1 AGGGGGCGAG 0.656097 -45 TAGCGTTCAGGAGGGGCCGCTGATACTGAG 17 69 0 GAGGGGCCGC 0.573586 -147 GTCGGTATTCGAGCCGTCACCGTTGTGCAT 17 125 0 GAGCCGTCAC 0.648925 -91 GAATACCGACCCCGGGTCGGTGGCTCGGCG 17 145 1 CCCGGGTCGG 0.769163 -71 CCTGCAATGGCGCACGCCAGTACGCCCAGG 18 83 0 CGCACGCCAG 0.352799 -218 CAGCGGCCTCGGCGGGGGCCGAGGCCGCGA 18 151 1 GGCGGGGGCC 0.790766 -150 GCGGGGGCCGAGGCCGCGAGAGCGCAGGCC 18 162 1 AGGCCGCGAG 0.806869 -139 GTTATCGTGCTCGGCGGCACTCGCCGTTTG 18 220 0 TCGGCGGCAC 0.703285 -81 TTTCTACGGGTACCGGCCAGCGGTGCCCGT 19 88 0 TACCGGCCAG 0.66463 -209 TTTTTGCGCGGGCGCGTCCGTTGATGGCAC 19 150 0 GGCGCGTCCG 0.877483 -147 GGCAGGTCCTTCGGCGCCACCACCCAATTT 19 202 0 TCGGCGCCAC 0.780011 -95 GGCTCATCGCCACGCGGCAGGTCCTTCGGC 19 217 0 CACGCGGCAG 0.868756 -80 CCAGGCTATGCCGCGGTCCGCCGACTCGTC 19 250 1 CCGCGGTCCG 0.64706 -47 CCGACTCGTCGCCGCGCGGCGGTAAGTTTG 19 270 1 GCCGCGCGGC 0.495685 -27 GGATACCATGAACGGGTGAGGGATTAGGGG 20 24 1 AACGGGTGAG 0.349679 -26 GGTGGTCTCCAACGCGTCGGGGCGG 22 41 1 AACGCGTCGG 0.583121 -15 CGATGACACAGCCCCGGCCGTCCCGCGCGA 23 19 1 GCCCCGGCCG 0.562912 -82 CCCCGGCCGTCCCGCGCGAGCGCCGGGACA 23 30 1 CCCGCGCGAG 0.887235 -71 CCCGCCACGCGGGCCGCCCCGTCACCGCAC 24 24 0 GGGCCGCCCC 0.50451 -151 CCTCCTCCTCGGCCCGCCACGCGGGCCGCC 24 36 0 GGCCCGCCAC 0.947429 -139 GGAGGAGGCGGAGGCGGCACAGCACCCGTC 24 58 1 GAGGCGGCAC 0.746913 -117 CTTGACGGACAGCCCGTCAGAGCAGTAGCC 24 104 1 AGCCCGTCAG 0.866304 -71 GCAGTGGTTTGCGGGGGCCGATAGGTTTGA 24 152 1 GCGGGGGCCG 0.801731 -23 TATCGCGATCCAGCGGCCGCTTCACCCGTT 26 51 1 CAGCGGCCGC 0.471645 -191 GGGGTAACGCACCCCGCCAGAATGGTTAAT 26 83 1 ACCCCGCCAG 0.923902 -159 CACAAGGCAAGCGGGGCCACTAACGGATTA 26 109 0 GCGGGGCCAC 0.836069 -133 CCCTGTCGTGAGGCCGCCGGA 26 231 1 AGGCCGCCGG 0.811643 -11 CGCCTACACCCGCCGGAGAACCTGGA 27 7 1 CACCCGCCGG 0.844031 -32 TCGCGCGTGACTGAAATCACA 29 2 1 CGCGCGTGAC 0.836611 -238 TCAAAGATTGAGCGCGGCAGTCACCGTCCG 29 40 1 AGCGCGGCAG 0.911892 -200 GCCAGCTATGGACGCGGCCGGCATCTGTTG 29 105 1 GACGCGGCCG 0.859237 -135 GGCACCCGTGTGCGGGCGAGCGCAGGAATC 30 226 0 TGCGGGCGAG 0.7935 -38 CTCGCCCGCACACGGGTGCCGGACGCAAGA 30 236 1 CACGGGTGCC 0.368945 -28 CCGAGCCCGCCAGCTATCGGCTC 32 4 1 AGCCCGCCAG 0.938089 -153 ATATGATCGGCGCGCGTCACAAGCTTCCGG 32 75 0 CGCGCGTCAC 0.897328 -82 GACGGGGCTTTCCGCGCGGGTGGGCACCAC 33 32 0 TCCGCGCGGG 0.798067 -170 CGCGCGGAAAGCCCCGTCCGAACCGTGATT 33 44 1 GCCCCGTCCG 0.889888 -158 CAGCGCTGCTGGCCCGGCCCGACGTTGCCC 33 74 0 GGCCCGGCCC 0.529701 -128 CCCTGATCCACACCGGCGACCGTTAGGCAG 33 136 1 CACCGGCGAC 0.621105 -66 GACTTGCCGAAGCCGGGGCCTTTCCCGCAG 34 20 1 AGCCGGGGCC 0.582983 -281 CACGTAGGCGTCCCGGCCAGGTCGCCGGAC 34 95 0 TCCCGGCCAG 0.836729 -206 GCCTACGTGTAGCCCGCGGCTAGCACAGGA 34 116 1 AGCCCGCGGC 0.766608 -185 GCACCCGCCTTGGCCGGGAGAGCGGCGTCG 34 199 1 TGGCCGGGAG 0.725327 -102 TCCGCGCCAGCCCGCGCCCCGAGCCTAACC 34 251 0 CCCGCGCCCC 0.505257 -50 ACACACCTCCTCCGCGCCAGCCCGCGCCCC 34 261 0 TCCGCGCCAG 0.921429 -40 GCCGACGAACTCCGCGGCCGCACGGTTGTG 36 47 1 TCCGCGGCCG 0.848525 -254 GCGATTCGGTTGGCCGTGAGCGCTGTTTTG 36 99 1 TGGCCGTGAG 0.628164 -202 CGCTAACCTAGCGCGGCGACGACCCGGGCG 36 192 1 GCGCGGCGAC 0.74567 -109 GCGCGGCGACGACCCGGGCGGTGTGGCGGC 36 202 1 GACCCGGGCG 0.783643 -99 AACAACTGCCGAGCCGCCACACCGCCCGGG 36 214 0 GAGCCGCCAC 0.812068 -87 GCCACGCCGTGGGGCGTGCGACATGAACAA 36 239 0 GGGGCGTGCG 0.674153 -62 CGCACGCCCCACGGCGTGGCGACACGCCCG 36 249 1 ACGGCGTGGC 0.390577 -52 TACCTCAGCGGCGGCGCCGGCGACCGAGAC 37 88 0 GCGGCGCCGG 0.517083 -213 GCGGCGGTCGTAGGCGGCGGTCCACAGGAC 37 193 0 TAGGCGGCGG 0.492561 -108 AGTCGGATGAGGCGCGGCAGGTCGGCGATG 39 20 1 GGCGCGGCAG 0.949325 -281 GGAGACGTCGGCCGCGTCACGTTTGACGAC 39 61 1 GCCGCGTCAC 0.911922 -240 CCGTCGCCGATACGCGGCACTATCTTCGCC 39 130 1 TACGCGGCAC 0.661516 -171 GACACCACCGGCTCCGCCAGATATCGCGAA 39 184 0 GCTCCGCCAG 0.323364 -117 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 41 13 1 CGGCGGCCCG 0.829085 -179 TCGGCGTTGACCCCCGTGAGAGGGTGGGTC 42 22 1 CCCCCGTGAG 0.86243 -20 TTGATAAATCGGGCGGTGACG 43 2 0 GGGCGGTGAC 0.610025 -299 AAGTGCGAATTCGCCGCCGGCTACCCGCAC 43 234 1 TCGCCGCCGG 0.772168 -67 CGGTACCCATCGCCGGGGCCAAACCGTGAC 44 21 1 CGCCGGGGCC 0.721718 -61 ********** Masking position 6 Map Score: 119.401 Number of sites scoring better than the average of aligned sites = 71985 Number in coding regions = 66829 Number in noncoding regions = 5156 Number of orfs with sites within 600 bp upstream = 1526 Fraction of orfs with sites within 600 bp upstream = 0.245101 Motif number 3 GCAGCTTCGAGCCCAGTAGGT 2 2 0 GCCCAGTAGG 0.80427 -122 GTTGACCCGCGCCGACCACCGTCAAAGTAT 2 36 1 GCCGACCACC 0.710877 -88 GCCCCGCGCTGCCGAGCACGTCAGCAAAGT 2 70 0 GCCGAGCACG 0.987514 -54 GGAGCAGACGGTGCAGGACGGAAAGGACGC 2 101 1 GTGCAGGACG 0.863411 -23 ACCCAGGCGGACGCAGGAGGAAATT 3 89 1 ACGCAGGAGG 0.335575 -15 AATACGCCGATCCGAGGAGGGCC 8 131 1 TCCGAGGAGG 0.582651 -13 ACGCGCCGGTGGCGGGCACGTGAAACCGAC 9 99 0 GGCGGGCACG 0.685285 -202 GCTCAACCGGGTCGAGTACGGTAACCGTAG 11 27 0 GTCGAGTACG 0.539047 -274 GACCCTGATGGTGCAGCAGGACAAGAAACC 11 90 0 GTGCAGCAGG 0.925943 -211 TCGCGGCCGCGCCCAGCAACAGACCAACCA 11 130 1 GCCCAGCAAC 0.796332 -171 ACCCACAGCCGTCGAGGAGCCACCGATGAA 11 192 0 GTCGAGGAGC 0.832473 -109 TCTGGCGGCGTTGAGCAACTCTTGAGCAT 12 10 1 GTTGAGCAAC 0.14547 -42 GTCGGCAGTCGCGCCGCACGCGGCAGTTGC 13 27 1 GCGCCGCACG 0.678992 -174 AAATCCTAGCGTTCAGGAGGGGCCGCTGAT 17 75 0 GTTCAGGAGG 0.526242 -141 GACAGGCTTTGCAAAGCAAGTACCAAGCGG 18 14 1 GCAAAGCAAG 0.130322 -287 GCTGACCGTCGCCCAGCACCCGCTGCAGAT 18 125 0 GCCCAGCACC 0.963831 -176 CTCGGCCCCCGCCGAGGCCGCTGACCGTCG 18 144 0 GCCGAGGCCG 0.912318 -157 CTCGGCGGGGGCCGAGGCCGCGAGAGCGCA 18 158 1 GCCGAGGCCG 0.912318 -143 GGCCGCGAGAGCGCAGGCCCGCATCGCCGA 18 173 1 GCGCAGGCCC 0.752985 -128 GGCGAGTGCCGCCGAGCACGATAACTAAAG 18 225 1 GCCGAGCACG 0.987514 -76 CTTGTGTGAGGCCCAGTACCGG 19 3 0 GCCCAGTACC 0.634258 -294 GAATCCGGAAGCGGACCACGGGGCTCTGCG 19 44 1 GCGGACCACG 0.823157 -253 CGTGCTCAACGCGCAGCGCCGATTTTTCTA 19 112 0 GCGCAGCGCC 0.515432 -185 GGCGCTGCGCGTTGAGCACGAACCGAGTGT 19 122 1 GTTGAGCACG 0.716167 -175 CCCGGCGCTCGCGCGGGACGGCCGGGGCTG 23 27 0 GCGCGGGACG 0.80411 -74 CGCGTGGCGGGCCGAGGAGGAGGCGGAGGC 24 43 1 GCCGAGGAGG 0.979389 -132 GGCGGAGGCGGCACAGCACCCGTCGAACGG 24 64 1 GCACAGCACC 0.699904 -111 TCCTCAGTAAGGTAAGGACGC 25 2 0 GGTAAGGACG 0.144185 -29 GCTCTTCATTGCGGAGGTGCCAG 26 4 0 GCGGAGGTGC 0.509389 -238 GCTGAGCAGCGGGAAGCAGGAGGCGGGTTT 28 37 0 GGGAAGCAGG 0.673982 -62 TGCTTCGCGCGCTGAGCAGCGGGAAGCAGG 28 47 0 GCTGAGCAGC 0.844384 -52 TGCTCAGCGCGCGAAGCAGGAGGCTGGTTT 28 59 1 GCGAAGCAGG 0.91725 -40 ACCCGAGAGTGCCAAGGAGGTTACAACCCC 29 220 1 GCCAAGGAGG 0.875264 -20 CCTTCCGTCAGCACAGCACGGTTGGCTACC 30 192 0 GCACAGCACG 0.835247 -72 CCCATCTTGCGTCCGGCACCCGTGTGCGGG 30 240 0 GTCCGGCACC 0.472209 -24 CGTCGGGCCGGGCCAGCAGCGCTGGACCGT 33 80 1 GGCCAGCAGC 0.844175 -122 GGTCGCCGGTGTGGATCAGGGCCGTAAGTC 33 127 0 GTGGATCAGG 0.225002 -75 GCGGGCTGGCGCGGAGGAGGTGTGTTGCGG 34 266 1 GCGGAGGAGG 0.976396 -35 GAGGTGTGTTGCGGAGGAGGTGTGTTGTA 34 282 1 GCGGAGGAGG 0.976396 -19 ATGAACAACTGCCGAGCCGCCACACCGCCC 36 217 0 GCCGAGCCGC 0.903456 -84 CGTTCCGGTCGCCGACGACGAAGAAATCGA 37 23 0 GCCGACGACG 0.746619 -278 AGCCGATGCGGTGGAGCAAGGGCGTGCTGT 37 152 0 GTGGAGCAAG 0.696582 -149 CGCAGGCCGCGTCCAGCAGGCGAAGGCATC 38 11 1 GTCCAGCAGG 0.9349 -114 GTCGGATGAGGCGCGGCAGGTCGGCGATGC 39 21 1 GCGCGGCAGG 0.890336 -280 GCGATATCTGGCGGAGCCGGTGGTGTCGCA 39 187 1 GCGGAGCCGG 0.947119 -114 GCCGGTGGTGTCGCAGCAGGGACGTCGGGG 39 202 1 TCGCAGCAGG 0.617728 -99 CGTTCGGCTAGGCGAGCAGGTGGTGGTGGT 39 253 0 GGCGAGCAGG 0.941451 -48 GCAACGGGCCGCCGAGCTGGGCGGAA 41 7 0 GCCGAGCTGG 0.824785 -185 GGAATGTGGGGTGGAGCAACGGGCCGCCGA 41 22 0 GTGGAGCAAC 0.513658 -170 TGATTGATGGGGGGAGGAGCCCGAATTGGG 43 81 0 GGGGAGGAGC 0.779716 -220 ATAACTGTAAGCCAAGCCCGCATTGCGCTG 44 59 0 GCCAAGCCCG 0.735996 -23 ********** Masking position 1 Map Score: 55.312 Number of sites scoring better than the average of aligned sites = 13794 Number in coding regions = 12930 Number in noncoding regions = 864 Number of orfs with sites within 600 bp upstream = 600 Fraction of orfs with sites within 600 bp upstream = 0.0963701 Motif number 4 TTGACCCGCGCCGACCACCGTCAAAGTATC 2 37 1 CCGACCACCG 0.65874 -87 TCGGCCTGCCAGGCACTGGC 3 1 1 TCGGCCTGCC 0.423345 -103 GTGTTCTTCTTCGCCGAGCCTACGTAACCG 3 46 0 TCGCCGAGCC 0.951829 -58 ACACGACCAGCCGCCGAACCCAGGCGGACG 3 72 1 CCGCCGAACC 0.735749 -32 AATTTCCTCCTGCGTCCGCCTGGGTTCG 3 86 0 CCTGCGTCCG 0.818893 -18 TCCTCACTTCCGGCCGACCTGTGGCCTCCG 7 106 0 CGGCCGACCT 0.546953 -26 ACCCCTTTGGTCTGCGAGCGATGAATGCAG 9 169 0 TCTGCGAGCG 0.672153 -132 ACTGCCTTCACCGGCGACCTCACCCGGCGA 9 203 1 CCGGCGACCT 0.953215 -98 GCCATGTCTACCGACTTGCGCATACTTCGC 9 229 0 CCGACTTGCG 0.593929 -72 CGGATACCACCCGCCGGCCGGCCAATTGGA 10 19 1 CCGCCGGCCG 0.879074 -90 CGTAGCTAGCCCCGCGACCCG 11 2 0 CCCGCGACCC 0.751031 -299 GGCGCGACTGCCGACTACCGCCGTACGCCG 13 12 0 CCGACTACCG 0.820197 -189 TTTGATCGCCTCGGCTCGCCCCCTAGCACC 15 33 0 TCGGCTCGCC 0.453405 -41 ACAAAGCGCGCCGTCGACCCTCAGTATCAG 17 50 1 CCGTCGACCC 0.798428 -166 CCACCGGTGGTCGCCGAGCCACCGACCCGG 17 156 0 TCGCCGAGCC 0.951829 -60 CCTGGGCGTACTGGCGTGCGCCATTGCAGG 18 83 1 CTGGCGTGCG 0.470532 -218 GCCTCGGCCCCCGCCGAGGCCGCTGACCGT 18 146 0 CCGCCGAGGC 0.781666 -155 CAGGCCCGCATCGCCGAGCCTGTAGATACC 18 186 1 TCGCCGAGCC 0.951829 -115 ACGGCGAGTGCCGCCGAGCACGATAACTAA 18 223 1 CCGCCGAGCA 0.719353 -78 GCCGCTGTCTTCGCCGAGCCTTTAGTTATC 18 244 0 TCGCCGAGCC 0.951829 -57 CTAGCTGCTTTCGCAGAGCCCCGTGGTCCG 19 55 0 TCGCAGAGCC 0.439174 -242 TCTACGGGTACCGGCCAGCGGTGCCCGTGG 19 86 0 CCGGCCAGCG 0.857676 -211 ATGCCGCGGTCCGCCGACTCGTCGCCGCGC 19 257 1 CCGCCGACTC 0.811951 -40 TCCAAACTTACCGCCGCGCGGCGACGAGTC 19 272 0 CCGCCGCGCG 0.930226 -25 CCGAGAAACACCGGAGTCCGGCGCTCG 21 8 0 CCGGAGTCCG 0.61276 -49 CTTTCTGACACCGACGTCTCGCTGAAGGTG 22 15 1 CCGACGTCTC 0.326557 -41 GACACAGCCCCGGCCGTCCCGCGCGAGCGC 23 23 1 CGGCCGTCCC 0.735376 -78 TTTGGTCGTTCCTGCGTCCCTACACTCGGT 26 181 1 CCTGCGTCCC 0.843396 -61 TCCGGCGGCCTCACGACAGGG 26 231 0 CCGGCGGCCT 0.679549 -11 AAACCCGCCTCCTGCTTCCCGCTGCTCAGC 28 37 1 CCTGCTTCCC 0.509055 -62 CACCCGTGTGCGGGCGAGCGCAGGAATCTG 30 224 0 CGGGCGAGCG 0.826682 -40 AAGCTTCCGGCCGCAGAGCCGCCAACTCAC 32 55 0 CCGCAGAGCC 0.761169 -102 GCAGATATGATCGGCGCGCGTCACAAGCTT 32 79 0 TCGGCGCGCG 0.783717 -78 CTGATCCACACCGGCGACCGTTAGGCAGGG 33 138 1 CCGGCGACCG 0.987838 -64 TGCGACACCGACTTGCCGAAGCCGGGG 34 8 1 CCGACTTGCC 0.634882 -293 TCTCTTAGGTCCGGCGACCTGGCCGGGACG 34 87 1 CCGGCGACCT 0.953215 -214 CAACACACCTCCTCCGCGCCAGCCCGCGCC 34 263 0 CCTCCGCGCC 0.643616 -38 ACCTAGCGCGGCGACGACCCGGGCGGTGTG 36 197 1 GCGACGACCC 0.467582 -104 ACATGAACAACTGCCGAGCCGCCACACCGC 36 219 0 CTGCCGAGCC 0.698308 -82 GCCTGCTACCGGTCGATTTCT 37 2 1 CCTGCTACCG 0.67651 -299 TTCTTCGTCGTCGGCGACCGGAACGACGAA 37 28 1 TCGGCGACCG 0.959414 -273 AGCGGCGGCGCCGGCGACCGAGACGCCAGC 37 82 0 CCGGCGACCG 0.987838 -219 GGGTTGGACACCGCCTACCTCAGCGGCGGC 37 103 0 CCGCCTACCT 0.781892 -198 TGGACCGCCGCCTACGACCGCCGCCATGGT 37 199 1 CCTACGACCG 0.727658 -102 CTCCAACGCATCGCCGACCTGCCGCGCCTC 39 28 0 TCGCCGACCT 0.820637 -273 CGTGACGCGGCCGACGTCTCCAATCTCCAA 39 52 0 CCGACGTCTC 0.326557 -249 GTGCCGCGTATCGGCGACGGCTTTGTCGCG 39 120 0 TCGGCGACGG 0.512649 -181 TGGGTCTGCCCCGACGTCCCTGCTGCGACA 39 210 0 CCGACGTCCC 0.920802 -91 CACCACCTGCTCGCCTAGCCGAACGTGTGG 39 258 1 TCGCCTAGCC 0.791843 -43 CCGACAAAAACCGCCTACCGC 40 2 0 CCGCCTACCG 0.944268 -42 GAGCAACGGGCCGCCGAGCTGGGCGGAA 41 9 0 CCGCCGAGCT 0.934655 -183 GTTTGGGCCTTCTGCTTCCGGTGCGGTCCG 41 126 1 TCTGCTTCCG 0.176491 -66 GAATTCGCCGCCGGCTACCCGCACCCCGTA 43 240 1 CCGGCTACCC 0.956629 -61 CAAGCCGATATCGGCTTGCGATTCTACGGG 43 264 0 TCGGCTTGCG 0.5936 -37 ********** Masking position 5 Map Score: 84.6578 Number of sites scoring better than the average of aligned sites = 21383 Number in coding regions = 19936 Number in noncoding regions = 1447 Number of orfs with sites within 600 bp upstream = 857 Fraction of orfs with sites within 600 bp upstream = 0.137649 Motif number 5 TGGGGGCGCGCCCCCACCGCTTCTCTGCGC 1 33 0 CCCCCACCGC 0.909385 -56 CGGTGGGGGCGCGCCCCCACAAGTGGGGGG 1 44 1 GCGCCCCCAC 0.940869 -45 CGGGTGGGGGTACCCCCCACTTGTGGGGGC 1 56 0 TACCCCCCAC 0.446114 -33 TGGGGGGTACCCCCACCCGCTTGCGGGGGA 1 67 1 CCCCACCCGC 0.868627 -22 GGTTGACCCGCGCCGACCACCGTCAAAGTA 2 35 1 CGCCGACCAC 0.676347 -89 GCCTACGTAACCGCACCGACAGCGAACAGC 3 29 0 CCGCACCGAC 0.832856 -75 GACCAAATTACTCACCTCACCGAAGCCGCC 7 44 0 CTCACCTCAC 0.265928 -88 AAACCTAGCACGCCAACCGCAGAAATCGGA 8 17 1 CGCCAACCGC 0.673116 -127 GGCTGATTCACGGACCCCACCGCATCCACT 9 15 1 CGGACCCCAC 0.960331 -286 GCCTTCACCGGCGACCTCACCCGGCGAAGT 9 206 1 GCGACCTCAC 0.483957 -95 TTTCGTCGCGGATACCACCCGCCGGCCG 10 9 1 CGGATACCAC 0.231411 -100 GGGGCTCACGCGGCAATCACGGCTGGCGCC 10 51 0 CGGCAATCAC 0.545813 -58 AGCAACAGACCAACCACCACGCTTGCGGCG 11 144 1 CAACCACCAC 0.59443 -157 GCCTCTCAAGCCGCACCCACAGCCGTCGAG 11 206 0 CCGCACCCAC 0.960611 -95 GCCTGCCACGCCGCCCTGACTGAGACAACG 13 58 0 CCGCCCTGAC 0.739668 -143 GTCGGTGGCTCGGCGACCACCGGTGGCGAG 17 160 1 CGGCGACCAC 0.68795 -56 GCGAGTGGATCCGCCACCACGACCCCCTCG 17 185 1 CCGCCACCAC 0.973695 -31 TCCCGGATGGCGAAACCCACACCTGGGCGT 18 62 1 CGAAACCCAC 0.532551 -239 CGCTGACCGTCGCCCAGCACCCGCTGCAGA 18 126 0 CGCCCAGCAC 0.638354 -175 CTCGCGGCCTCGGCCCCCGCCGAGGCCGCT 18 152 0 CGGCCCCCGC 0.948949 -149 AGGTCCTTCGGCGCCACCACCCAATTTTGG 19 199 0 GCGCCACCAC 0.870157 -98 TTCATGGTATCCCACCCCACTGGGG 20 6 0 CCCACCCCAC 0.968782 -44 CCGCCCCGACGCGTTGGAGA 22 46 0 CCGCCCCGAC 0.94725 -10 GCCACGCGGGCCGCCCCGTCACCGCACTAC 24 21 0 CCGCCCCGTC 0.399836 -154 TATCGGCCCCCGCAAACCACTGCCAAGGGG 24 145 0 CGCAAACCAC 0.728397 -30 TTCGGGGTAACGCACCCCGCCAGAATGGTT 26 80 1 CGCACCCCGC 0.867786 -162 ACTTTATTCACACCAATCACTACAGACACT 29 139 0 CACCAATCAC 0.264523 -101 CGTGCTGAGGCACACACCACCCGAGAGTGC 29 202 1 CACACACCAC 0.753181 -38 GGTTGGCTACCGAACACCACTACGTTGCAG 30 173 0 CGAACACCAC 0.633593 -91 CCGCAGAGCCGCCAACTCACGATATCGTTA 32 45 0 GCCAACTCAC 0.197867 -112 GCCCGACGTTGCCCAATCACGGTTCGGACG 33 58 0 GCCCAATCAC 0.218079 -144 CGCTGCTGGCCCGGCCCGACGTTGCCCAAT 33 71 0 CCGGCCCGAC 0.609556 -131 TGCGACACCGACTTGCCGAAGC 34 3 1 CGACACCGAC 0.384571 -298 GCGGACATGTCAGCACCCGCCTTGGCCGGG 34 187 1 CAGCACCCGC 0.619564 -114 GTTCATGTCGCACGCCCCACGGCGTGGCGA 36 241 1 CACGCCCCAC 0.628387 -60 CCATGGTAGCCACCCCTCACATCGCGTTTT 37 222 1 CACCCCTCAC 0.754749 -79 CGTCCCTGCTGCGACACCACCGGCTCCGCC 39 196 0 GCGACACCAC 0.713993 -105 TGGGGTGGGTCTGCCCCGACGTCCCTGCTG 39 215 0 CTGCCCCGAC 0.569865 -86 TCGGGGCAGACCCACCCCACCGAAAGAACC 39 226 1 CCCACCCCAC 0.968782 -75 ACCGAAAGAACCACCACCACCTGCTCGCCT 39 244 1 CCACCACCAC 0.862594 -57 GGCCCGTTGCTCCACCCCACATTCCACAGT 41 27 1 TCCACCCCAC 0.562378 -165 AAGTGTCCGCCGGACCGCACCGGAAGCAGA 41 136 0 CGGACCGCAC 0.622216 -56 ********** Masking position 10 Map Score: 43.7088 Number of sites scoring better than the average of aligned sites = 14871 Number in coding regions = 13841 Number in noncoding regions = 1030 Number of orfs with sites within 600 bp upstream = 655 Fraction of orfs with sites within 600 bp upstream = 0.105204 Motif number 6 CCGCTTCTCTGCGCTCTGCATCGTCGCCAGCGCGGG 1 9 0 GCCGTCTCGC 0.969187 -80 CCGGCCCCGCGCTGCCGAGCACGTCAGCAAAGTCACGA 2 65 0 GCCAACTCAC 0.192325 -59 GGCGTCCTTTCCGTCCTGCACCGTCTGCTCCGGCCCCG 2 94 0 CCCGCCTCTC 0.706468 -30 CCTGTGGCCTCCGCTCAACATCGGCGGCGGCATGACCA 7 81 0 CCCATCGCGC 0.860268 -51 TCTGCGGTTGGCGTGCTAGGTTTCCGACT 8 2 0 GCCATTCCGC 0.539679 -142 AGAAATCGGACCAAAAGAATCCATCGCCAGTGCATCCA 8 37 1 CCAACCTCGC 0.345516 -107 CGTATTTGCACCCGTCAGCCTACAAGTCGTAAGCAGGC 8 99 0 CCCGTAAAGC 0.0659981 -45 TGCCGGCTGATTCACGGACCCCACCGCAT 9 2 1 GCCGTCCGGC 0.873457 -299 TGAAACCGACCCAAACGATCCCAACGACGCGGCAACGC 9 71 0 CCCACCACGC 0.958936 -230 ACGGCTGGCGCCAATCCAATTGGCCGGCCGGCGGGTGG 10 25 0 CCCATGCCGC 0.961605 -84 CGCAACTGCCGCGTGCGGCGCGACTGCCGACTACCGCC 13 20 0 GCCGCGCTGC 0.7498 -181 TCTGTTCAGCGCTCTCGAAATGCAAGCCTGCCACGCCG 13 75 0 GCCATGAAGC 0.47111 -126 CGCCACCGGTGGTCGCCGAGCCACCGACCCGGGGTCGG 17 150 0 GGCGCCCCGC 0.856298 -66 CCATTGCAGGCCATGCTGCCTGATCTGCAGCGGGTGCT 18 103 1 CCCGTGTCTC 0.537511 -198 GGCCTCGGCCCCCGCCGAGGCCGCTGACCGTCGCCCAG 18 139 0 CCCACCCTGC 0.727826 -162 GGCGATGCGGGCCTGCGCTCTCGCGGCCTCGGCCCCCG 18 163 0 GCCCTCCGGC 0.278557 -138 CTCATCGCCACGCGGCAGGTCCTTCGGCGCCACCACCC 19 207 0 CGCGCCTCGC 0.748238 -90 GCGGCATAGCCTGGCCAGGCTCATCGCCACGCGGCAGG 19 226 0 CTCGTCTCGC 0.624103 -71 CTATGCCGCGGTCCGCCGACTCGTCGCCGCGCGGCGGT 19 255 1 GTCGTCTCGC 0.524471 -42 ACAGCCCCGGCCGTCCCGCGCGAGCGCCGGGACAGCGC 23 26 1 CCCGCGGCGC 0.896592 -75 ATAACCCGCAGCGTGCTGATTGCCCGCCTCTTCGTTGG 23 63 0 GCCGTGCCGC 0.975033 -38 CGGTGACGGGGCGGCCCGCGTGGCGGGCCGAGGAGGAG 24 27 1 GCCGTGCGGC 0.718963 -148 TGGCTACTGCTCTGACGGGCTGTCCGTCAAGGTGTTTG 24 97 0 TCCGTGCCGC 0.535771 -78 GAATTCGCACCCCTGTCGTGAGGCCGCCGGA 26 221 1 CCTGAGCCGC 0.242655 -21 TGCTTTCTCGCCTCCCAAACCCGCCTCCTGCTTCCCGC 28 21 1 CCCACCCCTC 0.756853 -78 GATCTGGCCAGCTATGGACGCGGCCGGCATCTGTTGTC 29 99 1 GCGACGCCGC 0.649732 -141 TCACCGTCTGCCATTCCAGCCGGAAGTCACTTTATTCA 29 159 0 CCCACGAAGC 0.529936 -81 GTGTGCCTCAGCACGTGACTTCACCGTCTGCCATTCCA 29 179 0 GCTATCCCGC 0.557757 -61 AGACTGCGGAGCGGACAGTTCCACAGGCGGACTCGGTC 30 124 0 GCCGCCCAGC 0.844161 -140 TGTCCGCTCCGCAGTCTACCTCGTTGACCTGCAACGTA 30 145 1 GCCATCTTGC 0.552273 -119 AGCACGGTTGGCTACCGAACACCACTACGTTGCAGGTC 30 170 0 GCCAACACTC 0.257098 -94 GTTGGCTCAACCCTGCCTAACGGTCGCCGGTGTGGATC 33 140 0 CCCTCGTCGC 0.510501 -62 CGTAGGCGTCCCGGCCAGGTCGCCGGACCTAAGAGATT 34 85 0 CCCGCGCGGC 0.867506 -216 GGCGTCGTGACCGTGCTGTCACCACGTCTGGTTAGGCT 34 222 1 CCCGACACGC 0.867474 -79 CATTGACCGAGCCGACGAACTCCGCGGCCGCACGGTTG 36 37 1 GCCATCGCGC 0.587204 -264 CAACCGAATCGCTTACGACGAGGTCGACATCGAACACA 36 73 0 GCCAAGTCGC 0.843436 -228 TCACCGCTGCGCTCACCATCTATACGACATCATGGTGT 36 146 0 GCCATAACGC 0.481065 -155 TGAACAACTGCCGAGCCGCCACACCGCCCGGGTCGTCG 36 208 0 CCCGACCCGC 0.935879 -93 ACGCCGTGGGGCGTGCGACATGAACAACTGCCGAGCCG 36 228 0 GCCATGACAC 0.29752 -73 GTCATCTACCGCTGCCAAGATGGACGTC 36 283 1 GCCATGACGC 0.929571 -18 GCCTGCTACCGGTCGATTTCTTCGTCGTCGGCGACC 37 9 1 CCCATCTCGC 0.953437 -292 AGCCGACGTCGTCGACCAAGCCTTCGTCGTTCCGGTCG 37 42 0 GTCACCTCGC 0.680374 -259 CGACCGAGACGCCAGCGAAGCCGACGTCGTCGACCAAG 37 60 0 GCCACCACGC 0.918996 -241 GCAAGGGCGTGCTGTCGATTTCGACGACGAAGCCGGGT 37 129 0 GCCATCACGC 0.916671 -172 TTCGCCGATTCGCGACAAAGCCGTCGCCGATACGCGGC 39 110 1 CGCACCTCGC 0.691488 -191 CCGAAAGAACCACCACCACCTGCTCGCCTAGCCGAACG 39 245 1 CACATGTCGC 0.214221 -56 TATTACTCACGTAGACCACACGTTCGGCTAGGCGAGCA 39 265 0 GTCACGTCGC 0.595772 -36 TTCCGCCCAGCTCGGCGGCCCGTTGCTCCA 41 3 1 CCCGCGCGGC 0.867505 -189 CGAATTCGCCGCCGGCTACCCGCACCCCGTAGAATCGC 43 239 1 GCCACGACCC 0.342391 -62 TTTGGCCCCGGCGATGGGTACCGTCGACGCGGT 44 6 0 GCGGCCTCGC 0.689065 -76 ATCGCCGGGGCCAAACCGTGACGACGTCTGCAGCGCAA 44 29 1 CCCGACACGC 0.867474 -53 ** * * ** *** * Masking position 18 Map Score: 47.0518 Number of sites scoring better than the average of aligned sites = 29982 Number in coding regions = 28501 Number in noncoding regions = 1481 Number of orfs with sites within 600 bp upstream = 884 Fraction of orfs with sites within 600 bp upstream = 0.141985 Motif number 7 TCTCTGCGCTCTGCATCGTCGCCAGCGCGGG 1 10 0 CTGCATCTCC 0.203167 -79 AGAAGCGGTGGGGGCGCGCCCCCACAAGTGGG 1 39 1 GGGGCGCCCC 0.43853 -50 ACCTACTGGGCTCGAAGCTGCCGGGGTT 2 7 1 TGGGCTCAAC 0.255493 -117 ATACTTTGACGGTGGTCGGCGCGGGTCAACCC 2 34 0 GGTGGTCGCC 0.565294 -90 CTGCCAGGCACTGGCTGTTCGCTGTCGGTGCG 3 16 1 CTGGCTGTCC 0.470622 -88 TGCGGTTACGTAGGCTCGGCGAAGAAGAACAC 3 44 1 TAGGCTCGCA 0.474078 -60 CAAACTGTTGTGGCCTCAGCTCGCC 6 4 0 TGGCCTCGCC 0.967926 -25 GGCCGACCTGTGGCCTCCGCTCAACATCGGCG 7 93 0 TGGCCTCGCC 0.967636 -39 CGTGGCTCCTCACTTCCGGCCGA 7 119 0 GTGGCTCTCC 0.948794 -13 CTGCCTTCACCGGCGACCTCACCCGGCGAAGT 9 204 1 CGGCGACTCC 0.46968 -97 CGGTTCATCGGTGGCTCCTCGACGGCTGTGGG 11 189 1 GTGGCTCTCA 0.64502 -112 ATGCTCAAGAGTTGCTCAACGCCGCCAGA 12 8 0 GTTGCTCACC 0.559093 -44 TCAGCCTATATAGCCTCATCGC 14 1 0 TAGCCTCTCC 0.721315 -26 GGTGGTTTGATCGCCTCGGCTCGCCCCCTAGC 15 36 0 TCGCCTCGCC 0.839458 -38 CCCCGGGTCGGTGGCTCGGCGACCACCGGTGG 17 154 1 GTGGCTCGCA 0.81801 -62 CGACGGTCAGCGGCCTCGGCGGGGGCCGAGGC 18 144 1 CGGCCTCGCG 0.692849 -157 TGCGCTCTCGCGGCCTCGGCCCCCGCCGAGGC 18 156 0 CGGCCTCGCC 0.981034 -145 TCGGCGATGCGGGCCTGCGCTCTCGCGGCCTC 18 171 0 GGGCCTGGCC 0.819234 -130 GCGGTATCTACAGGCTCGGCGATGCGGGCCTG 18 186 0 CAGGCTCGCA 0.652977 -115 TTCCGGATTCGGGGCTCGTCTCTTGTGTGAGG 19 22 0 GGGGCTCTCC 0.97809 -275 AGCGGACCACGGGGCTCTGCGAAAGCAGCTAG 19 53 1 GGGGCTCGCA 0.915698 -244 ACACTCGGTTCGTGCTCAACGCGCAGCGCCGA 19 120 0 CGTGCTCACC 0.713522 -177 AGGTCCTTCGGCGCCACCACCCAATTTTGGGT 19 197 0 GCGCCACACC 0.526284 -100 ATAGCCTGGCCAGGCTCATCGCCACGCGGCAG 19 227 0 CAGGCTCTCC 0.885565 -70 GGAGGCGGAGGCGGCACAGCACCCGTCGAACG 24 61 1 GCGGCACGCC 0.812389 -114 CGCGATCCAGCGGCCGCTTCACCCGTTTCGGG 26 54 1 CGGCCGCTCC 0.859802 -188 CGGGTGGTGTGTGCCTCAGCACGTGACTTCAC 29 193 0 GTGCCTCGCC 0.969552 -47 ACCTGGGTATTTGCCACTGCGCGGATCCCCCA 30 52 1 TTGCCACGCC 0.736184 -212 TCCGCGCGGGTGGGCACCACCCGAGCAGATCG 33 20 0 TGGGCACACC 0.779877 -182 TCCAGCGCTGCTGGCCCGGCCCGACGTTGCCC 33 74 0 CTGGCCCGCC 0.717746 -128 CAACCGACGGTTGGCTCAACCCTGCCTAACGG 33 155 0 TTGGCTCACC 0.868302 -47 CACGTCTGGTTAGGCTCGGGGCGCGGGCTGGC 34 244 1 TAGGCTCGGC 0.227307 -57 TAACCTAGCGCGGCGACGACCCGGGCGGTGTG 36 195 1 CGGCGACACC 0.446686 -106 AACAACTGCCGAGCCGCCACACCGCCCGGGTC 36 212 0 GAGCCGCACC 0.585332 -89 TTGGAGACGTCGGCCGCGTCACGTTTGACGAC 39 59 1 CGGCCGCTCC 0.857086 -242 TTTCGGTGGGGTGGGTCTGCCCCGACGTCCCT 39 219 0 GTGGGTCGCC 0.877696 -82 TCGGCGGCCCGTTGCTCCACCCCACATTCCAC 41 22 1 GTTGCTCACC 0.559092 -170 ACCCTCTCACGGGGGTCAACGCCGACGGAGAT 42 15 0 GGGGGTCACC 0.864285 -27 CAGCCCAATTCGGGCTCCTCCCCCCATCAATC 43 78 1 CGGGCTCTCC 0.97326 -223 ******* ** * Masking position 7 Map Score: 34.1331 Number of sites scoring better than the average of aligned sites = 9216 Number in coding regions = 8486 Number in noncoding regions = 730 Number of orfs with sites within 600 bp upstream = 545 Fraction of orfs with sites within 600 bp upstream = 0.0875361 Motif number 8 CAAGTCGGTAGACATGGCGCTGATACGCCA 9 241 1 GACATGGCGC 0.90072 -60 TTCAACTACCGATACCGCGCCTAATCCTGA 9 271 0 GATACCGCGC 0.976373 -30 CCCTGACTGAGACAACGCGCAACTGCCGCG 13 45 0 GACAACGCGC 0.969385 -156 ATGCTCCTTGGACAAAGCGCGCCGTCGACC 17 39 1 GACAAAGCGC 0.800249 -177 CGAGCCTGTAGATACCGCGACAAACGGCGA 18 200 1 GATACCGCGA 0.957639 -101 CGTTCACACGATAACCCGCAGCGTGCTGA 23 82 0 GATAACCCGC 0.848469 -19 GCCCAGTGAAGACACGACGAATCCTTGGGG 30 79 0 GACACGACGA 0.517027 -185 ATCGTTAACCGATATCCCGAGCCGATAGCT 32 22 0 GATATCCCGA 0.817667 -135 CTTTCCCGCAGATATCGCACACAGCGGCCA 34 39 1 GATATCGCAC 0.683366 -262 CGTCGAAATCGACAGCACGCCCTTGCTCCA 37 141 1 GACAGCACGC 0.739568 -160 CAAGAAAACCGAAAACGCGATGTGAGGGGT 37 233 0 GAAAACGCGA 0.692002 -68 AGCCGCATGACATCACGAGGGTCTGACA 37 283 0 GACATCACGA 0.834677 -18 AATACATATTGATATCGCGATATATAGATG 38 46 1 GATATCGCGA 0.954267 -79 GGCTCCGCCAGATATCGCGAATCGGTGAGG 39 175 0 GATATCGCGA 0.954267 -126 ACAATTGTTCGATACAGCGCAGTTGTTCAG 41 64 1 GATACAGCGC 0.839449 -128 ********** Masking position 4 Map Score: 11.1312 Number of sites scoring better than the average of aligned sites = 1671 Number in coding regions = 1542 Number in noncoding regions = 129 Number of orfs with sites within 600 bp upstream = 117 Fraction of orfs with sites within 600 bp upstream = 0.0187922 Motif number 9 CGTCTGCTCCGGCCCCGCGCTGCCGAGCACG 2 80 0 GGCCCCGCGT 0.813556 -44 GTTGAGCGGAGGCCACAGGTCGGCCGGAAGT 7 100 1 GGCCACAGGC 0.983946 -32 GCATCCAGCGGGCCATAGGGAACCGATTACC 8 68 1 GGCCATAGGA 0.580741 -76 GAACTCGGGGGCTCACGCGGCAATCACGGCT 10 57 0 GCTCACGCGC 0.56573 -52 ACGACGGATCGCCCCCGGGGAGTGGCGGTTT 11 64 1 GCCCCCGGGA 0.731214 -237 CTCGAATACCGACCCCGGGTCGGTGGCTCGG 17 142 1 GACCCCGGGC 0.855125 -74 GGCGACAGGCTTTGCAAAGCA 18 1 1 GGCGACAGGT 0.892416 -300 TCCGGAAGCGGACCACGGGGCTCTGCGAAAG 19 47 1 GACCACGGGC 0.972283 -250 AAAGCAGCTAGACCACGGGCACCGCTGGCCG 19 74 1 GACCACGGGA 0.935359 -223 CCAGGCTCATCGCCACGCGGCAGGTCCTTCG 19 219 0 CGCCACGCGC 0.713145 -78 ACCGCCGCGCGGCGACGAGTCGGCGGACCGC 19 262 0 GGCGACGAGC 0.717498 -35 ACCGTAGTGCGGTGACGGGGCGGCCCGCGTG 24 18 1 GGTGACGGGC 0.855906 -157 TCCGGCGGCCTCACGACAGGGGTGCGA 26 225 0 GGCCTCACGC 0.85832 -17 GCAGCAGACGACACGACTTGTGGTTAC 31 7 1 GACGACACGC 0.889529 -46 CACGACTTGTGGTTACAGGACAAAGCAAAGG 31 22 1 GGTTACAGGC 0.465792 -31 GCTAGCCGCGGGCTACACGTAGGCGTCCCGG 34 109 0 GGCTACACGA 0.655563 -192 TACCAATTCTGCCCACAGGCCCTACAGTGCG 35 46 0 GCCCACAGGC 0.928953 -24 CGAACTCCGCGGCCGCACGGTTGTGTTCGAT 36 52 1 GGCCGCACGT 0.453003 -249 CCCACGGCGTGGCGACACGCCCGGTCTGTCA 36 256 1 GGCGACACGC 0.954914 -45 CTTCGTCGTCGGCGACCGGAACGACGAAGGC 37 30 1 GGCGACCGGA 0.663686 -271 CCACCGCATCGGCTTCGGGTATTTCGTCCTG 37 168 1 GGCTTCGGGA 0.440374 -133 GTAGGCGGCGGTCCACAGGACGAAATACCCG 37 183 0 GTCCACAGGC 0.770999 -118 CGTCACGTTTGACGACGCGGTCGACGTTCCT 39 75 1 GACGACGCGT 0.735313 -226 TCGCAGCAGGGACGTCGGGGCAGACCCACCC 39 212 1 GACGTCGGGC 0.754798 -89 TACTCACGTAGACCACACGTTCGGCTAGGCG 39 269 0 GACCACACGT 0.764943 -32 GTCGTTTTGCGACCCCAGGTATAAGTGTCCG 41 157 0 GACCCCAGGA 0.763918 -35 GCATTTAGGGGATCACAGGCACCTTGAAATG 43 163 1 GATCACAGGA 0.512461 -138 GTTTGGCCCCGGCGATGGGTACCGTCGACGC 44 14 0 GGCGATGGGA 0.541797 -68 ********* * Masking position 9 Map Score: 22.6226 Number of sites scoring better than the average of aligned sites = 7143 Number in coding regions = 6576 Number in noncoding regions = 567 Number of orfs with sites within 600 bp upstream = 446 Fraction of orfs with sites within 600 bp upstream = 0.0716351 Motif number 10 GCGCAGAGAAGCGGTGGGGGCGCGCCCCCAC 1 33 1 GCGGTGGGGC 0.971809 -56 GCCGCCTGACGCGGTGAACGCACCGGCGGAT 7 19 0 GCGGTGACGC 0.835026 -113 GGATGCACTGGCGATGGATTCTTTTGGTCCG 8 43 0 GCGATGATTC 0.668981 -101 TCCCTATGGCCCGCTGGATGCACTGGCGATG 8 58 0 CCGCTGATGC 0.924318 -86 ATACGCCGATCCGAGGAGGGCC 8 132 1 CCGAGGGGGC 0.73195 -12 ATCAGTGGATGCGGTGGGGTCCGTGAATCAG 9 17 0 GCGGTGGGTC 0.833616 -284 GGCCCGTGACGCGCCGGTGGCGGGCACGTGA 9 106 0 GCGCCGTGGC 0.819617 -195 TGGTCTGCGAGCGATGAATGCAGACGCCGTG 9 161 0 GCGATGATGC 0.932943 -140 GGTGAGGTCGCCGGTGAAGGCAGTCCGGACC 9 196 0 CCGGTGAGGC 0.89355 -105 ACCTCACCCGGCGAAGTATGCGCAAGTCGGT 9 219 1 GCGAAGATGC 0.637113 -82 AGCCCGTGCGATGGATGCAGCAATGCTC 12 34 0 GCGATGATGC 0.932956 -18 GTCGGCAGTCGCGCCGCACGCGGCAGTTGCG 13 27 1 GCGCCGACGC 0.698535 -174 CATTAGCCGGGCGCTGCGGGGAA 15 3 0 GCGCTGGGGG 0.799383 -71 CGGCGCAGGGTACTACATGCTCC 17 3 1 GCGCAGGTAC 0.413932 -213 TACAGGCTCGGCGATGCGGGCCTGCGCTCTC 18 179 0 GCGATGGGGC 0.967443 -122 TCGATCAGAGCCGCTGTCTTCGCCGAGCCTT 18 252 0 CCGCTGCTTC 0.233413 -49 GCGGGCGCGTCCGTTGATGGCACACTCGGTT 19 142 0 CCGTTGTGGC 0.331037 -155 AACCCGCAGCGTGCTGATTGCCCGCCTCTTC 23 68 0 GTGCTGTTGC 0.468328 -33 CAAAGATTGAGCGCGGCAGTCACCGTCCGGT 29 41 1 GCGCGGAGTC 0.716162 -199 GCACTCTCGGGTGGTGTGTGCCTCAGCACGT 29 201 0 GTGGTGGTGC 0.566123 -39 GTGCCCACCCGCGCGGAAAGCCCCGTCCGAA 33 35 1 GCGCGGAAGC 0.554856 -167 CTACGGTCCAGCGCTGCTGGCCCGGCCCGAC 33 81 0 GCGCTGTGGC 0.958744 -121 TGACGAATGGCCGCTGTGTGCGATATCTGCG 34 45 0 CCGCTGGTGC 0.941827 -256 TTTGGCCCCGGCGATGGGTACCGTCGACGCG 44 13 0 GCGATGGTAC 0.67295 -69 AGCCCGCATTGCGCTGCAGACGTCGTCACGG 44 44 0 GCGCTGAGAC 0.87207 -38 ****** **** Masking position 6 Map Score: 21.5933 Number of sites scoring better than the average of aligned sites = 10072 Number in coding regions = 9548 Number in noncoding regions = 524 Number of orfs with sites within 600 bp upstream = 409 Fraction of orfs with sites within 600 bp upstream = 0.0656923 Motif number 11 GCGCCCCCACCGCTTCTCTGCGCTCTGCATCGTCGCC 1 19 0 CGTCGGTCTG 0.704033 -70 TGCACCGTCTGCTCCGGCCCCGCGCTGCCGAGCACGT 2 79 0 GCCGCGGCTG 0.719262 -45 CTGGCGTCCTTTCCGTCCTGCACCGTCTGC 2 104 0 GCTCCGCCTG 0.948909 -20 CGTGGCTCCTCACTTCCGGCCGACCTGTGGCCTCCGC 7 105 0 CATCCGCCTG 0.593016 -27 GCCGCCGCAAGCGTGGTGGTTGGTCTGTTGCTGGGCG 11 139 0 GCTGTGTCTG 0.536414 -162 TCACGGTGGCGCATACGCTCCGGGTTGGGGGGCCAGG 11 262 0 GCTCCGGTTG 0.769787 -39 GAAATGCAAGCCTGCCACGCCGCCCTGACTGAGACAA 13 60 0 CCGCCGCCTG 0.877329 -141 CCCCCTAGCACCATTAGCCGGGCGCTGCGGGGAA 15 8 0 CCTAGGGCTG 0.729589 -66 TCACCGTTGTGCATCGAAAGAGGTCTGATCATTGAAA 17 102 0 GCTGGGTCTG 0.911986 -114 CCATTGCAGGCCATGCTGCCTGATCTGCAGCGGGTGC 18 103 1 CCTCCGTCTG 0.987594 -198 GTGTTTGGCCCCGTTCGACGGGTGCTGTGCCGCCTCC 24 67 0 CCTCGGGCTG 0.979451 -108 GGGAATCCGCCCCTGGCTACTGCTCTGACGGGCTGTC 24 111 0 CCTGCGTCTG 0.975822 -64 GGGCGGATTCCCCTTGGCAGTGGTTTGCGGGGGCCGA 24 136 1 CCTGGGTTTG 0.589158 -39 GTTCCTGCGTCCCTACACTCGGTTCATCCTGACGAAT 26 188 1 CCTCCGTCAT 0.265269 -54 CAAACCAGCCTCCTGCTTCGCGCGCTGAGCAGCGGGA 28 53 0 TCTCGGGCTG 0.729589 -46 GCTAGATCACCTTCCGGTCTGCTCAGAACACCTGGA 30 10 1 CCTCCGTCAG 0.90502 -254 TGTTCGGTAGCCAACCGTGCTGTGCTGACGGAAGGCT 30 187 1 CCACCGGCTG 0.87068 -77 CAACGTCGGGCCGGGCCAGCAGCGCTGGACCGTAGGT 33 77 1 CCGCCGGCTG 0.948227 -125 CGGGAGAGCGGCGTCGTGACCGTGCTGTCACCACGTC 34 213 1 GCTGCGGCTG 0.960256 -88 CACCGTGGGAACAGTTCTGTTGCCGCCAT 36 3 1 CCTGCGTCTG 0.975822 -298 TGCCTGTACCTTTCTTCCGGGTCTGTAATTGCAGC 38 100 0 CCTCCGTCTG 0.987601 -25 TGGGCCTTCTGCTTCCGGTGCGGTCCGGCGGACACTT 41 129 1 GCTCGGTCCG 0.672795 -63 ** * * * * **** Masking position 12 Map Score: 22.5991 Number of sites scoring better than the average of aligned sites = 2573 Number in coding regions = 2415 Number in noncoding regions = 158 Number of orfs with sites within 600 bp upstream = 146 Fraction of orfs with sites within 600 bp upstream = 0.02345 Motif number 12 TACGGTAACCGTAGCTAGCCCCGCGACCCG 11 10 0 GTAGCTACCC 0.94607 -291 GTGTAGAACTGTAGCTAAACCATTTGTAAAC 13 153 1 GTAGCTAACC 0.947083 -48 CTCTGCGAAAGCAGCTAGACCACGGGCACCG 19 67 1 GCAGCTAACC 0.936559 -230 GTGGTGTTCGGTAGCCAACCGTGCTGTGCTG 30 183 1 GTAGCCACCG 0.942208 -81 ACCTCACCTCGCAGCCAGACGCTCAACCGAC 33 179 0 GCAGCCAACG 0.932064 -23 GTCGAAGGCAATAGCCACACCATGATGTCGT 36 130 1 ATAGCCAACC 0.842608 -171 CAACTGCCGAGCCGCCACACCGCCCGGGTCG 36 211 0 GCCGCCAACC 0.956555 -90 GACCGGGCGTGTCGCCACGCCGTGGGGCGTG 36 251 0 GTCGCCAGCC 0.907065 -50 CGCCGCCATGGTAGCCACCCCTCACATCGCG 37 217 1 GTAGCCACCC 0.98166 -84 ******* *** Masking position 7 Map Score: 5.87419 Number of sites scoring better than the average of aligned sites = 571 Number in coding regions = 519 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 13 GCGGCTTCGGTGAGGTGAGTAATTTGGTCA 7 45 1 TGAGGTGAGT 0.750466 -87 GTGGATGCGGTGGGGTCCGTGAATCAGCCG 9 14 0 TGGGGTCCGT 0.775716 -287 CCCCAGTGGGGTGGGATACCATGAAC 20 7 1 TGGGGTGGGA 0.831873 -43 CGGGACGGCCGGGGCTGTGTCATCGTTGAG 23 14 0 GGGGCTGTGT 0.916728 -87 ACCATTCTGGCGGGGTGCGTTACCCCGAAA 26 79 0 CGGGGTGCGT 0.922431 -163 GCGGGAAGCAGGAGGCGGGTTTGGGAGGCG 28 29 0 GGAGGCGGGT 0.83672 -70 GGCACTCTCGGGTGGTGTGTGCCTCAGCAC 29 203 0 GGTGGTGTGT 0.851193 -37 CTGGCGCGGAGGAGGTGTGTTGCGGAGGAG 34 271 1 GGAGGTGTGT 0.949545 -30 GTGTTGCGGAGGAGGTGTGTTGTA 34 287 1 GGAGGTGTGT 0.949545 -14 GTTCTTTCGGTGGGGTGGGTCTGCCCCGAC 39 225 0 TGGGGTGGGT 0.977126 -76 ACCCCCGTGAGAGGGTGGGTC 42 31 1 GAGGGTGGGT 0.853581 -11 GAGCCCGAATTGGGCTGCGTCTGGTTGGAG 43 65 0 TGGGCTGCGT 0.874839 -236 ********** Masking position 4 Map Score: 6.73611 Number of sites scoring better than the average of aligned sites = 642 Number in coding regions = 582 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 14 TACCCCCCACTTGTGGGGGCGCGCCCCCAC 1 46 0 TTGTGGGGGC 0.742307 -43 CGCTCAACATCGGCGGCGGCATGACCAAGT 7 78 0 CGGCGGCGGC 0.973252 -54 ATCGAATCAGTGGATGCGGTGGGGTCCGTG 9 23 0 TGGATGCGGT 0.703012 -278 GGTCTGTTGCTGGGCGCGGCCGCGATCTTC 11 125 0 TGGGCGCGGC 0.930675 -176 ACCACCACGCTTGCGGCGGCGGGCGCGACG 11 156 1 TTGCGGCGGC 0.981955 -145 TCGACGGCTGTGGGTGCGGCTTGAGAGGCT 11 207 1 TGGGTGCGGC 0.819374 -94 TCTGGCGGCGTTGAGCAACTCT 12 3 1 TGGCGGCGTT 0.763218 -49 GAGGGGGTCGTGGTGGCGGATCCACTCGCC 17 184 0 TGGTGGCGGA 0.84033 -32 CACTCGCCGTTTGTCGCGGTATCTACAGGC 18 203 0 TTGTCGCGGT 0.766793 -98 CAAAATTGGGTGGTGGCGCCGAAGGACCTG 19 200 1 TGGTGGCGCC 0.829217 -97 GAGGAGGAGGCGGAGGCGGCACAGCACCCG 24 56 1 CGGAGGCGGC 0.904148 -119 GGATTCCCCTTGGCAGTGGTTTGCGGGGGC 24 140 1 TGGCAGTGGT 0.570089 -35 TGGCAGTGGTTTGCGGGGGCCGATAGGTTT 24 150 1 TTGCGGGGGC 0.867577 -25 TAGCTCTTCATTGCGGAGGTGCCAG 26 6 0 TTGCGGAGGT 0.50959 -236 TGGCCAGCTATGGACGCGGCCGGCATCTGT 29 103 1 TGGACGCGGC 0.941838 -137 TCACTGGGCATGGTAGCGGCGAATGACCGA 30 100 1 TGGTAGCGGC 0.945401 -164 GACCCGGGCGGTGTGGCGGCTCGGCAGTTG 36 212 1 GTGTGGCGGC 0.706375 -89 ACGTCCATCTTGGCAGCGGTAGATGACAGA 36 280 0 TGGCAGCGGT 0.944558 -21 CGGCGGTCGTAGGCGGCGGTCCACAGGACG 37 192 0 AGGCGGCGGT 0.852313 -109 GTGGCTACCATGGCGGCGGTCGTAGGCGGC 37 205 0 TGGCGGCGGT 0.988381 -96 CTTCGCCTGCTGGACGCGGCCTGCG 38 6 0 TGGACGCGGC 0.941838 -119 GGGTCTGTAATTGCAGCGGCAGCTCGTTGC 38 87 0 TTGCAGCGGC 0.915954 -38 GGCGAGCAGGTGGTGGTGGTTCTTTCGGTG 39 243 0 TGGTGGTGGT 0.744325 -58 ********** Masking position 6 Map Score: 30.3931 Number of sites scoring better than the average of aligned sites = 7816 Number in coding regions = 7412 Number in noncoding regions = 404 Number of orfs with sites within 600 bp upstream = 307 Fraction of orfs with sites within 600 bp upstream = 0.0493093 Motif number 15 TCTCCCCCGCAAGCGGGTGGGGGTAC 1 73 0 CCGCAAGCGG 0.685892 -16 AGCCAGTGCCTGGCAGGCCGA 3 2 0 TGGCAGGCCG 0.79485 -102 CAGCCGCCGAACCCAGGCGGACGCAGGAGG 3 79 1 ACCCAGGCGG 0.941168 -25 ACCCAGGCGGACGCAGGAGGAAATT 3 89 1 ACGCAGGAGG 0.9255 -15 TACAAGTCGTAAGCAGGCGGTAATCGGTTC 8 87 0 AAGCAGGCGG 0.98275 -57 GTGAGCCGTTAGCCAGGCGTTGCCGCGTCG 9 55 1 AGCCAGGCGT 0.388846 -246 GCGGCTTGAGAGGCTAGAGGCAACTTAGCA 11 222 1 AGGCTAGAGG 0.309428 -79 GCAAAGCAAGTACCAAGCGGCGCAACGGCG 18 24 1 TACCAAGCGG 0.673451 -277 CACTGGCACAAGGCAAGCGGGGCCACTAAC 26 115 0 AGGCAAGCGG 0.940194 -127 GGAGGCGAGAAAGCAAGCGGGACCG 28 6 0 AAGCAAGCGG 0.935517 -93 GAGCAGCGGGAAGCAGGAGGCGGGTTTGGG 28 34 0 AAGCAGGAGG 0.919716 -65 TCAGCGCGCGAAGCAGGAGGCTGGTTTGGG 28 62 1 AAGCAGGAGG 0.919716 -37 CCGGCTGGAATGGCAGACGGTGAAGTCACG 29 174 1 TGGCAGACGG 0.714691 -66 CCCGAGCCGATAGCTGGCGGGCTCGG 32 7 0 TAGCTGGCGG 0.815914 -150 CGCGGCGACGACCCGGGCGGTGTGGCGGCT 36 203 1 ACCCGGGCGG 0.778025 -98 GCCGCCGCTGAGGTAGGCGGTGTCCAACCC 37 103 1 AGGTAGGCGG 0.820174 -198 ATGGCGGCGGTCGTAGGCGGCGGTCCACAG 37 196 0 TCGTAGGCGG 0.714685 -105 ACCGCACCGGAAGCAGAAGGCCCAAACGGT 41 123 0 AAGCAGAAGG 0.458051 -69 GCGATTGATAAATCGGGCGGTGACG 43 6 0 AATCGGGCGG 0.382395 -295 GGGGTGCGGGTAGCCGGCGGCGAATTCGCA 43 237 0 TAGCCGGCGG 0.78832 -64 CCCCGTAGAATCGCAAGCCGATATCGGCTT 43 263 1 TCGCAAGCCG 0.496534 -38 ********** Masking position 10 Map Score: 18.2424 Number of sites scoring better than the average of aligned sites = 6404 Number in coding regions = 5990 Number in noncoding regions = 414 Number of orfs with sites within 600 bp upstream = 321 Fraction of orfs with sites within 600 bp upstream = 0.051558