AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00550_mtub_reg_300.orf -o00550_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 argS 300 argS #2 thrB 217 thrB #3 rho 256 rho #4 rpmE 150 rpmE #5 prfA 89 prfA #6 rfe 83 rfe #7 bfrA 300 bfrA #8 Rv1877 84 hypothetical protein Rv1877 #9 glnA3 54 glnA3 #10 Rv2136c 63 hypothetical protein Rv2136c #11 murE 22 murE #12 hypothetical 267 hypothetical protein Rv2160c #13 Rv2161c 102 hypothetical protein Rv2161c #14 PE_PGRS 209 PE_PGRS #15 Rv2166c 300 hypothetical protein Rv2166c #16 glnA1 300 glnA1 #17 glnA2 94 glnA2 #18 Rv2223c 61 hypothetical protein Rv2223c #19 Rv2224c 300 hypothetical protein Rv2224c #20 glnA4 159 glnA4 #21 map 41 map #22 Rv2862c 300 hypothetical protein Rv2862c #23 ddlA 77 ddlA #24 gpdA2 118 gpdA2 Motif number 1 ********** No masking Map Score: 1.83563e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 ********** No masking Map Score: 1.83563e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 3 GGTTCTTACCCCGACGAATTTGAGAGCG 1 9 1 CCCCGACGAA 0.581813 -292 CACCCGCGAGGGCGGCCGCATAGTTGGCTT 1 47 0 GGCGGCCGCA 0.680355 -254 ACAATGTGATCGGCGCCACCCGCGAGGGCG 1 63 0 CGGCGCCACC 0.895338 -238 TCGAATCCTGCCGGGGGCACAAGGGTTGAT 1 114 0 CCGGGGGCAC 0.813833 -187 CAGGATTCGAACCTGCGGCCTTCTGCTCCG 1 134 1 ACCTGCGGCC 0.593075 -167 CCTGAGCTACGGGGGCGCACGACGACACGT 1 182 1 GGGGGCGCAC 0.792942 -119 GCGCTACTCTGGCGGGGCCCCATGGCGCAA 1 211 0 GGCGGGGCCC 0.810166 -90 AGTAGCGCATCGCGGCTACCCACTGACCAC 1 233 1 CGCGGCTACC 0.90009 -68 GAATCCGTTGCGGTGGTCAGTGGGTAGCCG 1 245 0 CGGTGGTCAG 0.58216 -56 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 2 14 1 CGCGGCGGAG 0.700841 -204 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 2 26 0 CGCCGCACCC 0.504525 -192 CCAATCCAAACCGTGCCGACCCGCCGCACC 2 37 0 CCGTGCCGAC 0.93466 -181 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 2 71 1 CGCGGCGGAG 0.700841 -147 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 2 83 0 CGCCGCACCC 0.504525 -135 CCAATCCAAACCGTGCCGACCCGCCGCACC 2 94 0 CCGTGCCGAC 0.93466 -124 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 2 128 1 CGCGGCGGAG 0.700841 -90 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 2 140 0 CGCCGCACCC 0.504525 -78 CCAATCCAAACCGTGCCGACCCGCCGCACC 2 151 0 CCGTGCCGAC 0.93466 -67 CGATCGCAAGCGCGGCGGAGCCGGGTGCGG 2 185 1 CGCGGCGGAG 0.700841 -33 CGTGCCGACCCGCCGCACCCGGCTCCGCCG 2 197 0 CGCCGCACCC 0.504525 -21 GCGTGCCGACCCGCCGCACC 2 208 0 GCGTGCCGAC 0.917613 -10 GCAAGCAAACCCCCGCAACCTTGCGGA 3 8 0 CCCCGCAACC 0.830855 -249 GACGTGATCAGCGGGGGAAGGAAAGGAAAT 3 235 1 GCGGGGGAAG 0.510693 -22 CGGACATTCCCGGCGAGCCGTCTCGCCGGA 4 11 0 CGGCGAGCCG 0.800579 -140 ACACCGAGATGCGTGCGGACATTCCCGGCG 4 26 0 GCGTGCGGAC 0.851118 -125 GCCCGTCGTGGCGTGCCGAGAACCTGGTCC 4 108 0 GCGTGCCGAG 0.903809 -43 CGCCACGACGGGCGGCCACCGATCACAGAG 4 125 1 GGCGGCCACC 0.760971 -26 CGTCCTGTACCGCTGGTGCACAGTTCGGGC 5 24 0 CGCTGGTGCA 0.474499 -66 CTTCCCGCGAGCGCGGACCCTAACGCGAAC 5 61 0 GCGCGGACCC 0.742454 -29 CTTGATCGTTCGCCGACGCAGCATCTGCTG 7 25 0 CGCCGACGCA 0.788199 -276 TTGGACTTTGCGCCGGCGAGACGCGCCGAC 7 119 1 CGCCGGCGAG 0.98183 -182 CGGCGAGACGCGCCGACGCCGCAACAAACC 7 132 1 CGCCGACGCC 0.895899 -169 ACAAACCCTGCGCCGACCCGTACTCGCTGC 7 155 1 CGCCGACCCG 0.891013 -146 CAGCACGTTTGCGTGCCGCGTCTCAATCTA 7 187 0 GCGTGCCGCG 0.905737 -114 CCCAAGACGAGCCCGACACCGGTGCGCTCC 7 224 1 GCCCGACACC 0.813574 -77 TGCGCTCCAGCCCTGCCCACCTGGCGCGGT 7 246 1 CCCTGCCCAC 0.931639 -55 CCACTCCGGGCGCCGCTGACAAGCTCTAGC 8 35 1 CGCCGCTGAC 0.974739 -50 GATCAGCTCGCGCGGCTACGCGCGGCAAGC 9 15 0 CGCGGCTACG 0.883541 -40 GCGAGCTGATCCGCGCTGCAGAATGACTGC 9 34 1 CCGCGCTGCA 0.710362 -21 GCATCCGTCTACCGGCCGCCGGTAACCGGG 10 13 1 ACCGGCCGCC 0.864984 -51 TCGTCGTGACCGCGGCTCCGGCG 10 51 1 CGCGGCTCCG 0.731383 -13 CCTACCGACAGGGCGCGCACAC 11 3 0 GGGCGCGCAC 0.868216 -20 GCCCGGGTTTGGCGGCCGACGTCGGCG 12 8 0 GGCGGCCGAC 0.770808 -260 GCCGCCAAACCCGGGCGCAGATCCTGCGCG 12 22 1 CCGGGCGCAG 0.881513 -246 CGCAGATCCTGCGCGCCGCGATGGATATCG 12 37 1 GCGCGCCGCG 0.868812 -231 ATGCCCAGCCGCCCGGCAAGCTCGCCGATG 12 95 0 GCCCGGCAAG 0.849861 -173 TCCGGCATTTCGGCGCCAAGGAGCAGCTGC 12 142 1 CGGCGCCAAG 0.922565 -126 GAGCAGCTGCAGCTGGCGACCGTCGAGGCC 12 162 1 AGCTGGCGAC 0.527472 -106 CGACCGTCGAGGCCGCCGTGAGCGTGTTCG 12 178 1 GGCCGCCGTG 0.595547 -90 GCGCTGCCATCGCGGGAGCCACGACCTCGG 12 211 0 CGCGGGAGCC 0.855824 -57 CCACCCCGGGCGGCGCTGCCATCGCGGGAG 12 223 0 CGGCGCTGCC 0.851972 -45 GCGCCGCCCGGGGTGGACCGGGTGCGCGCC 12 237 1 GGGTGGACCG 0.499284 -31 GCATGCATGAGGGCGCGCACCCGGTCCACC 12 248 0 GGGCGCGCAC 0.868216 -20 CCCGGGCCCCGAGCGAGCGGT 13 2 1 CCGGGCCCCG 0.85918 -101 ACGATGGTCCGCCTGGGGCGTGCTGTCAAT 13 45 0 GCCTGGGGCG 0.886976 -58 GCTTAATGAAAGCCGCCGCCG 13 92 1 AGCCGCCGCC 0.788474 -11 CCGTTACCGGCGCCGCCGCC 14 1 0 CGCCGCCGCC 0.503595 -209 AAACGAACCGGCGCGCGCCGTTACCGGCGC 14 18 0 GCGCGCGCCG 0.845511 -192 CGCAACATGTGCGCGCTGACGATCGGGTTG 14 66 1 GCGCGCTGAC 0.922439 -144 GGATCGAAAGCCCTGCCGACGGTGTCGCAG 14 146 1 CCCTGCCGAC 0.96252 -64 GGGTGAACCGCCCCGGTGAGTCCGGAGACT 15 26 0 CCCCGGTGAG 0.919641 -275 CGCCGACAGCCGGTGACGACCCGGCTGGGT 15 52 0 CGGTGACGAC 0.785323 -249 CCGGGCAAATGGGTGGCAAGTGGGGCCAAG 15 117 0 GGGTGGCAAG 0.565775 -184 CCACCCATTTGCCCGGCGACATGCGGTTTT 15 131 1 GCCCGGCGAC 0.972144 -170 GCGCGGCTAGCCCGGCTACGACCTCAGAAA 15 158 0 CCCGGCTACG 0.841234 -143 AGAGCCGCCAGCCGGCGCCCCATCGGAGCC 16 12 1 GCCGGCGCCC 0.754216 -289 CGCTGGGCTTGCCGGACACCGGACCGGGTT 16 46 0 GCCGGACACC 0.73853 -255 TATCGGGTCTGCCCGATGACGGCGAAATCG 16 98 0 GCCCGATGAC 0.789243 -203 CCCACAATAGGGCCGGGGAGACCCGGCGTC 16 178 1 GGCCGGGGAG 0.955966 -123 ACGTTACTGACCGTGCCGCCCACCACTGAC 16 205 0 CCGTGCCGCC 0.936075 -96 TTACTGTATCCGCGGCCGACGCTATGGAGC 16 270 0 CGCGGCCGAC 0.793469 -31 CAAGGGGAGTGCGCGGTGAGT 17 2 0 GCGCGGTGAG 0.831829 -93 TCCCCTTGCGGGCCGCCCCGCAACGCTTCT 17 24 1 GGCCGCCCCG 0.502439 -71 TGTTACCGATGCCCGGCCAGAAGCGTTGCG 17 42 0 GCCCGGCCAG 0.939664 -53 CGGGGCGAAGAAACGAAGGT 18 1 1 CGGGGCGAAG 0.798164 -61 CACAGGTATTCGCCGGTGAGACG 18 49 1 CGCCGGTGAG 0.943574 -13 CGAGGGCGATCCCCGATGCCGTCCACCCCT 19 25 0 CCCCGATGCC 0.898197 -276 ATCAGGTTGGCGCTGGCACCCCGTCCACGC 19 81 0 CGCTGGCACC 0.867547 -220 GCGTCGGCCTCGGCGGTGCACAACTGCGAC 19 111 0 CGGCGGTGCA 0.638543 -190 GCACCGCCGAGGCCGACGCGCCCGTGCCGG 19 122 1 GGCCGACGCG 0.853414 -179 ACGCGCCCGTGCCGGATCCGGTCGACGGGT 19 137 1 GCCGGATCCG 0.664878 -164 TATGGGGGATGGCCGACGAGTTCGCCATCG 19 197 1 GGCCGACGAG 0.938043 -104 CCGACTAACCGGCCGCTGCCAGCAGTCCTG 19 234 0 GGCCGCTGCC 0.770213 -67 CGACGGTGGCCGCTGGCCAGGATCTCGGGT 19 265 1 CGCTGGCCAG 0.892346 -36 ACATGATGGGCGCTGGTGCCCATCATGTTC 20 28 0 CGCTGGTGCC 0.911469 -132 CACCGCGAACCGCCGGAGCCGGCGAGTAGA 20 67 0 CGCCGGAGCC 0.910437 -93 TGCTGGCTGTCGCGGGCACCGCGAACCGCC 20 83 0 CGCGGGCACC 0.936773 -77 TCTATAGGCTCCGGGCCCACATGCTGGCTG 20 104 0 CCGGGCCCAC 0.944978 -56 TAGCCGGGCGCGGCCAAAATTTGCC 21 6 1 GGGCGCGGCC 0.500052 -36 CCAAAATTTGCCCGGCTAAGCTAGCGGG 21 24 1 CCCGGCTAAG 0.742842 -18 TTGCGTCACGGCCCGACGAGACAGGGGCAG 22 27 0 GCCCGACGAG 0.9126 -274 CGCAATTCCTGGGCGGTGCGCAGGGGACGT 22 65 1 GGGCGGTGCG 0.929412 -236 CTGCGTCAAGCGGGGCTCAGGCAGCTCGAG 22 106 0 CGGGGCTCAG 0.865075 -195 TCCGGCAGCAAGCCGCAGCCCAGCAGATGT 22 150 0 AGCCGCAGCC 0.635165 -151 CCGACGAAGAGCGGGAGGCGTTCCGGCAGC 22 171 0 GCGGGAGGCG 0.778661 -130 GCTGTTGAAAGGCCGCCGAAAACCTAGCAG 22 216 0 GGCCGCCGAA 0.899746 -85 GCCTCGCACGGGCCGGCACGACCGAAAACT 23 11 1 GGCCGGCACG 0.937753 -67 GAGCCCGTCTGCCTGACCCGGTAGCCTCTG 23 52 1 GCCTGACCCG 0.741839 -26 CGTCGATCCACGCGGCACACTTCGACGGCA 24 27 1 CGCGGCACAC 0.815167 -92 CCACGGTCGTGGCCGGGGCCCAGGCACGGT 24 63 1 GGCCGGGGCC 0.848793 -56 CGACGGCAACCGCGGCGCAGATTAGTGTGT 24 95 1 CGCGGCGCAG 0.754453 -24 ********** Masking position 5 Map Score: 173.164 Number of sites scoring better than the average of aligned sites = 133477 Number in coding regions = 125534 Number in noncoding regions = 7943 Number of orfs with sites within 600 bp upstream = 1620 Fraction of orfs with sites within 600 bp upstream = 0.260199 Motif number 4 TGTGATCGGCGCCACCCGCGAGGGCGGCCG 1 59 0 GCCACCCGCG 0.945742 -242 TTGCGCCATGGGGCCCCGCCAGAGTAGCGC 1 211 1 GGGCCCCGCC 0.847614 -90 GTGGTCAGTGGGTAGCCGCGATGCGCTACT 1 233 0 GGTAGCCGCG 0.924368 -68 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGT 2 19 1 CGGAGCCGGG 0.991547 -199 CCAAACCGTGCCGACCCGCCGCACCCGGCT 2 32 0 CCGACCCGCC 0.984223 -186 GCCACCCAATCCAAACCGTGCCGACCCGCC 2 42 0 CCAAACCGTG 0.497552 -176 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGT 2 76 1 CGGAGCCGGG 0.991547 -142 CCAAACCGTGCCGACCCGCCGCACCCGGCT 2 89 0 CCGACCCGCC 0.984223 -129 GCCACCCAATCCAAACCGTGCCGACCCGCC 2 99 0 CCAAACCGTG 0.497552 -119 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGT 2 133 1 CGGAGCCGGG 0.991547 -85 CCAAACCGTGCCGACCCGCCGCACCCGGCT 2 146 0 CCGACCCGCC 0.984223 -72 GCCACCCAATCCAAACCGTGCCGACCCGCC 2 156 0 CCAAACCGTG 0.497552 -62 GCAAGCGCGGCGGAGCCGGGTGCGGCGGGT 2 190 1 CGGAGCCGGG 0.991547 -28 GCGTGCCGACCCGCCGCACCCGGCT 2 203 0 CCGACCCGCC 0.984223 -15 GGGCTATCCTCGGAGCCGTCCAGCAATCGC 3 53 1 CGGAGCCGTC 0.946455 -204 CCATCAGCGGCGAATACGGCGAACCTCGTC 3 137 0 CGAATACGGC 0.232974 -120 TCCGGCGAGACGGCTCGCCGGGAA 4 5 1 GCGAGACGGC 0.914298 -146 TGCGTGCGGACATTCCCGGCGAGCCGTCTC 4 17 0 CATTCCCGGC 0.620635 -134 CGAGTTGGAACCGGACCAGGTTCTCGGCAC 4 96 1 CCGGACCAGG 0.384309 -55 GCCCGTCGTGGCGTGCCGAGAACCTGGTCC 4 108 0 GCGTGCCGAG 0.897067 -43 CTCTGTGATCGGTGGCCGCCCGTCGTGGCG 4 125 0 GGTGGCCGCC 0.657815 -26 CTGGCTTACCGACGCCCGAACTG 5 4 1 GCTTACCGAC 0.33994 -86 GGACCCTAACGCGAACCGACGCCCGTCCTG 5 47 0 GCGAACCGAC 0.83683 -43 GGCGCAAAGTCCAAGCCGCGGGTCATTGTT 7 103 0 CCAAGCCGCG 0.959316 -198 CTTTGCGCCGGCGAGACGCGCCGACGCCGC 7 124 1 GCGAGACGCG 0.864796 -177 CAGCACGTTTGCGTGCCGCGTCTCAATCTA 7 187 0 GCGTGCCGCG 0.967666 -114 TGTTATCAGCCCAAGACGAGCCCGACACCG 7 215 1 CCAAGACGAG 0.401129 -86 GGCTGTCGTGGCGAACCGCGCCAGGTGGGC 7 260 0 GCGAACCGCG 0.938072 -41 CGATGCTTGCCGCGCGTAGCCGCG 9 5 1 GCTTGCCGCG 0.865506 -50 GCTTGCCGCGCGTAGCCGCGCGAGCTGATC 9 15 1 CGTAGCCGCG 0.946467 -40 GCGCATCCGTCTACCGGCCGC 10 2 1 CGCATCCGTC 0.430191 -62 GCATCCGTCTACCGGCCGCCGGTAACCGGG 10 13 1 ACCGGCCGCC 0.524124 -51 ACCGGCCGCCGGTAACCGGGTACCGTCGTC 10 23 1 GGTAACCGGG 0.805475 -41 CGCCGGAGCCGCGGTCACGACGA 10 51 0 CGGAGCCGCG 0.988066 -13 CGTCGGCCGCCAAACCCGGGCGCAGATCCT 12 17 1 CAAACCCGGG 0.775963 -251 CGCAGATCCTGCGCGCCGCGATGGATATCG 12 37 1 GCGCGCCGCG 0.90602 -231 CTTGCTCATGCCCAGCCGCCCGGCAAGCTC 12 102 0 CCCAGCCGCC 0.934198 -166 AATGCCGGAACAGGCCCGACTTGCTCATGC 12 121 0 CAGGCCCGAC 0.679407 -147 TGGCGACCGTCGAGGCCGCCGTGAGCGTGT 12 175 1 CGAGGCCGCC 0.905641 -93 TGAGCGTGTTCGAAGCCGAGGTCGTGGCTC 12 196 1 CGAAGCCGAG 0.857567 -72 CCGAGGTCGTGGCTCCCGCGATGGCAGCGC 12 211 1 GGCTCCCGCG 0.876044 -57 CGATGGCAGCGCCGCCCGGGGTGGACCGGG 12 229 1 GCCGCCCGGG 0.850853 -39 CCGCTCGCTCGGGGCCCGGG 13 1 0 GGGGCCCGGG 0.966952 -102 GAGCGGTCACGCAATCCGGCATTGACAGCA 13 25 1 GCAATCCGGC 0.708558 -78 CGTGCTTAATGAAAGCCGCCGCCG 13 89 1 GAAAGCCGCC 0.777197 -14 CCGTTACCGGCGCCGCCGCC 14 1 0 CGCCGCCGCC 0.843084 -209 GCGGCGGCGCCGGTAACGGCGCGCGCCGGT 14 12 1 CGGTAACGGC 0.592246 -198 TGGAGCCGAAACGAACCGGCGCGCGCCGTT 14 26 0 ACGAACCGGC 0.592936 -184 GGATCGAAAGCCCTGCCGACGGTGTCGCAG 14 146 1 CCCTGCCGAC 0.876025 -64 GGGCGGTTCACCCAGCCGGGTCGTCACCGG 15 43 1 CCCAGCCGGG 0.910856 -258 TTTCTGAGGTCGTAGCCGGGCTAGCCGCGC 15 158 1 CGTAGCCGGG 0.961151 -143 TTCAGTGGTACAGAGACGGCAAAACGCCGC 15 190 1 CAGAGACGGC 0.739793 -111 CAGAGCCGCCAGCCGGCGCCCCATCGG 16 8 1 GCCAGCCGGC 0.920127 -293 GGCGCCCCATCGGAGCCAGCGAACCCGGTC 16 25 1 CGGAGCCAGC 0.81222 -276 TTGCCGGACACCGGACCGGGTTCGCTGGCT 16 38 0 CCGGACCGGG 0.952464 -263 CGGCGAAATCGCCGCCCGACTATCCCGGCA 16 79 0 GCCGCCCGAC 0.791262 -222 CGGGTCTGCCCGATGACGGCGAAATCGCCG 16 95 0 CGATGACGGC 0.609504 -206 CCGGTGGCATGCCGAACGGGAACCTGGTTA 16 126 0 GCCGAACGGG 0.388394 -175 TAGGGCCGGGGAGACCCGGCGTCAGTGGTG 16 185 1 GAGACCCGGC 0.918028 -116 ACGTTACTGACCGTGCCGCCCACCACTGAC 16 205 0 CCGTGCCGCC 0.980746 -96 TAACGTCTGCGCAACACGGGGTTGACTGAC 16 229 1 GCAACACGGG 0.559574 -72 ACACGGGGTTGACTGACGGGCAATATCGGC 16 242 1 GACTGACGGG 0.268186 -59 TTACTGTATCCGCGGCCGACGCTATGGAGC 16 270 0 CGCGGCCGAC 0.827261 -31 CACTCCCCTTGCGGGCCGCCCCGCAACGCT 17 21 1 GCGGGCCGCC 0.92337 -74 CCGTGTTACCGATGCCCGGCCAGAAGCGTT 17 45 0 GATGCCCGGC 0.610135 -50 GGGCGATCCCCGATGCCGTCCACCCCTTCG 19 22 0 CGATGCCGTC 0.669272 -279 CCAAGGTGCACCATGCCGGCGTGGACGGGG 19 63 1 CCATGCCGGC 0.947721 -238 GGCGTGGACGGGGTGCCAGCGCCAACCTGA 19 80 1 GGGTGCCAGC 0.577775 -221 TGTGCACCGCCGAGGCCGACGCGCCCGTGC 19 119 1 CGAGGCCGAC 0.818484 -182 ACCCGTCGACCGGATCCGGCACGGGCGCGT 19 137 0 CGGATCCGGC 0.925881 -164 GGGCAAGACACCGACCCGTCGACCGGATCC 19 150 0 CCGACCCGTC 0.918509 -151 CGTCCGGTAACAGATCCGGGCAAGACACCG 19 167 0 CAGATCCGGG 0.690043 -134 ACTAACCGGCCGCTGCCAGCAGTCCTGCCA 19 231 0 CGCTGCCAGC 0.478364 -70 CCGTCGGCCGACTAACCGGCCGCTGCCAGC 19 241 0 ACTAACCGGC 0.241203 -60 GCTGCCAGAGCAGACCCGAGATCCTGGCCA 19 278 0 CAGACCCGAG 0.738663 -23 CGCGAACCGCCGGAGCCGGCGAGTAGACGC 20 64 0 CGGAGCCGGC 0.992789 -96 GGCGGTTCGCGGTGCCCGCGACAGCCAGCA 20 83 1 GGTGCCCGCG 0.816461 -77 AAATTTTGGCCGCGCCCGGCTA 21 3 0 CGCGCCCGGC 0.916869 -39 CGAGTTCTTTGCGTCACGGCCCGACGAGAC 22 35 0 GCGTCACGGC 0.733333 -266 AACGTCCCCTGCGCACCGCCCAGGAATTGC 22 66 0 GCGCACCGCC 0.723465 -235 AGAGCGGGAGGCGTTCCGGCAGCAAGCCGC 22 164 0 GCGTTCCGGC 0.818106 -137 GGCCCATTCCCGAGAGTTCTGGCA 22 287 0 CATTCCCGAG 0.221084 -14 TTCGGTCGTGCCGGCCCGTGCGAGGC 23 7 0 CCGGCCCGTG 0.860574 -71 TACCGGGTCAGGCAGACGGGCTCCCACGAG 23 45 0 GGCAGACGGG 0.787714 -33 AACCTGCAGAGGCTACCGGGTCAGGCAGAC 23 58 0 GGCTACCGGG 0.806398 -20 ACTTCGACGGCATTGCCGCCACGGTCGTGG 24 45 1 CATTGCCGCC 0.671864 -74 CCGCCACGGTCGTGGCCGGGGCCCAGGCAC 24 60 1 CGTGGCCGGG 0.645533 -59 GGCCCAGGCACGGTCCCGACGGCAACCGCG 24 79 1 CGGTCCCGAC 0.879502 -40 CGGTCCCGACGGCAACCGCGGCGCAGATTA 24 89 1 GGCAACCGCG 0.863901 -30 ********** Masking position 7 Map Score: 136.34 Number of sites scoring better than the average of aligned sites = 65292 Number in coding regions = 61031 Number in noncoding regions = 4261 Number of orfs with sites within 600 bp upstream = 1463 Fraction of orfs with sites within 600 bp upstream = 0.234982 Motif number 5 GGTTGATCTAGCCTCACGCATGGCTACAACAAT 1 88 0 GCTCACGCGG 0.387824 -213 GGAGCAGAAGGCCGCAGGTTCGAATCCTGCCGG 1 130 0 GCGCAGGTGA 0.745708 -171 CGTTGCGGTGGTCAGTGGGTAGCCGCGATGCGC 1 237 0 GCAGTGGGGC 0.674531 -64 AACCACCTCAGCCCATAGGATGGACGTTC 1 282 1 GCCATAGGGG 0.387218 -19 TGGCGATCGCAAGCGCGGCGGAGC 2 2 1 GCGATCGCGC 0.981577 -216 TGGATTGGGTGGCGATCGCAAGCGCGGCGGAGC 2 59 1 GCGATCGCGC 0.981577 -159 TGGATTGGGTGGCGATCGCAAGCGCGGCGGAGC 2 116 1 GCGATCGCGC 0.981577 -102 TGGATTGGGTGGCGATCGCAAGCGCGGCGGAGC 2 173 1 GCGATCGCGC 0.981577 -45 CCGCTTCCTGGCCGGAAGCAAGCAAACCCCCGC 3 22 0 GCGGAAGCGC 0.892949 -235 CCGTTGCAAAGTCGATGATTGGCGCACTCGGCG 3 173 1 GCGATGATGC 0.777149 -84 GCCCTCTGTGATCGGTGGCCGCCCGTCGTGGCG 4 125 0 ACGGTGGCCC 0.540153 -26 CCGCCGAACGTGCACGCACTGCGAA 6 3 1 GCGAACGTAC 0.144166 -81 CCGGCGCAAAGTCCAAGCCGCGGGTCATTGTTA 7 102 0 GCCAAGCCGG 0.61793 -199 GCTGGAGCGCACCGGTGTCGGGCTCGTCTTGGG 7 224 0 ACGGTGTCGC 0.689207 -77 CACTCCGGGCGCCGCTGACAAGCTCTAGCATCG 8 36 1 GCGCTGACGC 0.907193 -49 CGACTCGAACAGCGATGGGAGGGCGGAT 8 67 1 ACGATGGGGG 0.777516 -18 TCTACCGGCCGCCGGTAACCGGGTACCGTCGTC 10 20 1 GCGGTAACGG 0.429231 -44 CGCCGGAGCCGCGGTCACGACGAC 10 50 0 GCGGAGCCGG 0.899927 -14 CGGGTTTGGCGGCCGACGTCGGCG 12 2 0 GCCGACGTGC 0.722625 -266 CGGCAAGCTCGCCGATGGACAGCCCCGAGAGCC 12 79 0 GCGATGGAGC 0.767386 -189 CGGCGAGCTTGCCGGGCGGCTGGGCATGAGCAA 12 98 1 GCGGGCGGGG 0.652093 -170 GCTCCTTGGCGCCGAAATGCCGGAACAGGCCCG 12 133 0 GCGAAATGGG 0.151054 -135 CGGCGGCCTCGACGGTCGCCAGCTGCAGCTGCT 12 163 0 GCGGTCGCGC 0.986205 -105 CGACCGTCGAGGCCGCCGTGAGCGTGTTCGAAG 12 178 1 GCCGCCGTGC 0.396485 -90 CGTGTTCGAAGCCGAGGTCGTGGCTCCCGCGAT 12 200 1 GCGAGGTCGG 0.472787 -68 GGATTGCGTGACCGCTCGCTCGGGGCCCGGG 13 9 0 ACGCTCGCGG 0.800917 -94 GTTCGTGTTTAACGATGGTCCGCCTGGGGCGTG 13 53 0 ACGATGGTGC 0.835369 -50 CTTCCGCCAACCCGATCGTCAGCGCGCACATGT 14 70 0 CCGATCGTGC 0.327185 -140 TGCCGACGGTGTCGCAGGTCTGGGATTCGTGAA 14 159 1 GCGCAGGTGG 0.935695 -51 TGCTGAGCTGGTCGGAGGTGCGGG 14 196 1 GCGGAGGTGG 0.951639 -14 TGGCAAGTGGGGCCAAGTGGGGCACAACTGGGG 15 101 0 GCCAAGTGGC 0.42265 -200 GCTCCGATGGGGCGCCGGCTGGCGGCTCTG 16 8 0 GCGCCGGCGC 0.919334 -293 CGCTGGGCTTGCCGGACACCGGACCGGGTTCGC 16 43 0 GCGGACACGA 0.287498 -258 CAAGATCGTAACCGGTGGCATGCCGAACGGGAA 16 134 0 ACGGTGGCGC 0.950544 -167 CCTATTGTGGGGCCATGGTCGGCAAGATCGTAA 16 156 0 GCCATGGTGC 0.899046 -145 GAGACCCGGCGTCAGTGGTGGGCGGCACGGTCA 16 195 1 GCAGTGGTGC 0.64813 -106 ATCCGCGGCCGACGCTATGGAGCCGATATTGCC 16 260 0 GCGCTATGGC 0.331322 -41 AAACCGTGTTACCGATGCCCGGCCAGAAGCGTT 17 45 0 ACGATGCCGC 0.697748 -50 GGGGCGAAGAAACGAAGGTGTGATCATTTCGCG 18 12 1 ACGAAGGTGA 0.267259 -50 GATGGGTTCGTCGAAGGGGTGGACGGCATCGG 19 10 1 GCGAAGGGGG 0.942526 -291 GGTGCACCTTGGCCATCGCCCGAGGGCGATCCC 19 42 0 GCCATCGCGA 0.614785 -259 ACATCAGGTTGGCGCTGGCACCCCGTCCACGCC 19 80 0 GCGCTGGCCC 0.875495 -221 CCAACCTGATGTCGCAGTTGTGCACCGCCGAGG 19 101 1 GCGCAGTTGC 0.735053 -200 CGGTCGACGGGTCGGTGTCTTGCCCGGATCTGT 19 155 1 GCGGTGTCGC 0.948053 -146 CGGATCTGTTACCGGACGTATGGGGGATGGCCG 19 179 1 ACGGACGTGG 0.527949 -122 GTTCGCCATCGGCGATGGCAGGACTGCTGGCAG 19 216 1 GCGATGGCGA 0.934904 -85 GCCGACGGTGGCCGCTGGCCAGGATCTCGGGTC 19 263 1 GCGCTGGCGG 0.986047 -38 GAACATGATGGGCGCTGGTGCCCATCATGTTCT 20 27 0 GCGCTGGTCC 0.713755 -133 CCCACATGCTGGCTGTCGCGGGCACCGCGAACC 20 86 0 GCTGTCGCGC 0.691953 -74 GTTGACTAGCGGCCATGGTGTGGGAGGAAGTGC 20 136 1 GCCATGGTGG 0.85923 -24 GCAATTCCTGGGCGGTGCGCAGGGGACGTTGTC 22 66 1 GCGGTGCGGG 0.860311 -235 CCGGCAGCAAGCCGCAGCCCAGCAGATGTCCCT 22 146 0 GCGCAGCCGC 0.914221 -155 AATCCTTTCCGACGAAGAGCGGGAGGCGTTCCG 22 176 0 GCGAAGAGGG 0.582784 -125 GGTCGTGCCGGCCCGTGCGAGGC 23 1 0 GCCGTGCGGC 0.696354 -77 CGCGTGGATCGACGCTGGCAGGATGACTTC 24 8 0 GCGCTGGCGA 0.934491 -111 TCGTGGCCGGGGCCCAGGCACGGTCCCGACGGC 24 69 1 GCCCAGGCGG 0.908347 -50 * ******* ** Masking position 3 Map Score: 65.4088 Number of sites scoring better than the average of aligned sites = 32233 Number in coding regions = 30131 Number in noncoding regions = 2102 Number of orfs with sites within 600 bp upstream = 1110 Fraction of orfs with sites within 600 bp upstream = 0.178285 Motif number 6 ACGAATTTGAGAGCGAGACCACGAAGCCAACTA 1 24 1 GAGCGAACCG 0.956432 -277 ACAACAATGTGATCGGCGCCACCCGCGAGGGCG 1 63 0 GATCGGGCCC 0.794139 -238 TGGCGATCGCAAGCGCGGCGGAGCCGG 2 5 1 GATCGCACCG 0.993522 -213 ATTGGGTGGCGATCGCAAGCGCGGCGGAGCCGG 2 62 1 GATCGCACCG 0.993522 -156 ATTGGGTGGCGATCGCAAGCGCGGCGGAGCCGG 2 119 1 GATCGCACCG 0.993522 -99 ATTGGGTGGCGATCGCAAGCGCGGCGGAGCCGG 2 176 1 GATCGCACCG 0.993522 -42 ATTCGCCGCTGATGGCGATCACCGTTGCAAAGT 3 152 1 GATGGCACCC 0.993596 -105 TCCGGCGAGACGGCTCGCCGGGAATGTCCGC 4 9 1 GACGGCCCGG 0.923691 -142 ATGCCAGGTCAACCGCTATCACCCCAAACACCG 4 50 0 AACCGCACCC 0.857636 -101 TTCTTCCCGCGAGCGCGGACCCTAACGCGAACC 5 60 0 GAGCGCGCCT 0.674276 -30 TGCGCGCCGCGATGGATATCGCCTCGGTGAAGG 12 46 1 GATGGAACCC 0.972176 -222 CAAGCTCGCCGATGGACAGCCCCGAGAGCCCCT 12 76 0 GATGGAACCC 0.972176 -192 CGGCCTCGACGGTCGCCAGCTGCAGCTGCTCCT 12 160 0 GGTCGCACGC 0.838609 -108 GCATGCATGAGGGCGCGCACCCGGTCCACCC 12 247 0 GAGGGCCCCC 0.960193 -21 CGGATTGCGTGACCGCTCGCTCGGGGCCCGGG 13 10 0 GACCGCCCCG 0.974098 -93 CCGCCAACCCGATCGTCAGCGCGCACATGTTGC 14 67 0 GATCGTACCG 0.877506 -143 ATTGTTATAGGATCGAAAGCCCTGCCGACGGTG 14 137 1 GATCGAACCT 0.813636 -73 GTGGTACAGAGACGGCAAAACGCCGCTTTGATA 15 194 1 GACGGCAAGC 0.773713 -107 TCTGCCCGATGACGGCGAAATCGCCGCCCGACT 16 88 0 GACGGCAACG 0.885609 -213 GCCATCGCCCGAGGGCGATCCCCGATGCCGTCC 19 31 0 GAGGGCACCC 0.989976 -270 TGCCATCGCCGATGGCGAACTCGTCGGCCATCC 19 203 0 GATGGCACCG 0.992467 -98 AAAAGAACATGATGGGCACCAGCGCCCATCATG 20 24 1 GATGGGACGC 0.88095 -136 CTGTCGCGGGCACCGCGAACCGCCGGAGCCGGC 20 74 0 CACCGCACGC 0.769869 -86 GCCAGTTACTGAGGGACATCTGCTGGGCTGCGG 22 135 1 GAGGGAACGC 0.892805 -166 GGGCCGGCACGACCGAAAACTGCAGCTCGTGGG 23 20 1 GACCGAACGC 0.938648 -58 GCACGGTCCCGACGGCAACCGCGGCGCAGATTA 24 86 1 GACGGCACCG 0.992452 -33 ****** * * ** Masking position 5 Map Score: 45.2979 Number of sites scoring better than the average of aligned sites = 7453 Number in coding regions = 7072 Number in noncoding regions = 381 Number of orfs with sites within 600 bp upstream = 274 Fraction of orfs with sites within 600 bp upstream = 0.044009 Motif number 7 TCTATCCCCTGAGCTACGGGGGCGCACGACGACA 1 175 1 GGCTAGGGCG 0.7827 -126 TGGCGATCGCAAGCGCGGCGGAGCCGGGTG 2 7 1 TGCAACGGCG 0.950242 -211 TGGGTGGCGATCGCAAGCGCGGCGGAGCCGGGTG 2 64 1 TGCAACGGCG 0.950242 -154 TGGGTGGCGATCGCAAGCGCGGCGGAGCCGGGTG 2 121 1 TGCAACGGCG 0.950242 -97 TGGGTGGCGATCGCAAGCGCGGCGGAGCCGGGTG 2 178 1 TGCAACGGCG 0.950242 -40 GGCAGTACGTATGCAGATGCTGCGATTGCTGGAC 3 70 0 AGCAGCTGCG 0.711341 -187 TCGCCATCAGCGGCGAATACGGCGAACCTCGTCC 3 136 0 CGCGACGGCG 0.911046 -121 AGATGCGTGCGGACATTCCCGGCGAGCCGTCTCG 4 16 0 GACATCGGCG 0.895539 -135 TACCGCTGGTGCACAGTTCGGGCGTCGGTAAGCC 5 13 0 GACAGGGGCG 0.972462 -77 TGCACCAGCGGTACAGGACGGGCGTCGGTTCGCG 5 34 1 GACAGGGGCG 0.972462 -56 CCGCCGAACGTGCACGCACTGCGAAGATTCGGC 6 10 1 GGCACCTGCG 0.943264 -74 CTCGCCGAACGTGCAACAGCTGCGAACAATTGGC 6 42 0 GGCAACTGCG 0.985522 -42 AGCAAACCCCCAGCAGATGCTGCGTCGGCGAACG 7 15 1 CGCAGCTGCG 0.969017 -286 GCCGACGCCGCAACAAACCCTGCGCCGACCCGTA 7 143 1 CACAACTGCG 0.861404 -158 TCTCAATCTAGTGCAGCGAGTACGGGTCGGCGCA 7 163 0 GGCAGGTACG 0.69821 -138 CGCGCCAGGTGGGCAGGGCTGGAGCGCACCGGTG 7 240 0 GGCAGTGGAG 0.245784 -61 GTCGTCGTGACCGCGGCTCCGGCG 10 50 1 CGCGGCGGCG 0.930495 -14 CCTACCGACAGGGCGCGCACAC 11 8 0 CACCGGGGCG 0.63231 -15 CCAAACCCGGGCGCAGATCCTGCGCGCCGCGATG 12 26 1 GGCAGCTGCG 0.988961 -242 CCCAGCCGCCCGGCAAGCTCGCCGATGGACAGCC 12 88 0 CGCAACGCCG 0.69055 -180 GGCTGGGCATGAGCAAGTCGGGCCTGTTCCGGCA 12 115 1 GGCAAGGGCC 0.766493 -153 CGGCGCCAAGGAGCAGCTGCAGCTGGCGACCGTC 12 152 1 GGCAGCAGCT 0.644568 -116 GCCGCCCGGGGTGGACCGGGTGCGCGCCCTCATG 12 239 1 GGGACGTGCG 0.295541 -29 AACAACTTTTGCGCAACATGTGCGCGCTGACGAT 14 55 1 GGCAAGTGCG 0.970667 -155 GCCAAGTGGGGCACAACTGGGGCTCAAACCGGAC 15 89 0 GACAAGGGCT 0.701317 -212 GCATGTCGCCGGGCAAATGGGTGGCAAGTGGGGC 15 121 0 GGCAAGGTGG 0.512912 -180 CGCTTCAGTGGTACAGAGACGGCAAAACGCCGCT 15 187 1 GACAGCGGCA 0.610639 -114 CCCAGTTATGGGGCAAAGTGGGGGATTGTGGGGT 15 228 1 GGCAAGGGGG 0.965991 -73 GTCCGGTGTCCGGCAAGCCCAGCGTCTTGCCGGG 16 52 1 CGCAACAGCG 0.846072 -249 CAATAGGGCCGGGGAGACCCGGCGTCAGTGGTGG 16 182 1 GGGAGCGGCG 0.935137 -119 AGTAACGTCTGCGCAACACGGGGTTGACTGACGG 16 227 1 GGCAAGGGGT 0.713118 -74 GTTGACTGACGGGCAATATCGGCTCCATAGCGTC 16 249 1 GGCAACGGCT 0.948631 -52 TCGAAGGGGTGGACGGCATCGGGGATCGCCCTCG 19 21 1 GACGGCGGGG 0.737198 -280 TGGCCAAGGTGCACCATGCCGGCGTGGACGGGGT 19 60 1 GACCACGGCG 0.885041 -241 TGTCGCAGTTGTGCACCGCCGAGGCCGACGCGCC 19 110 1 GGCACCGAGG 0.431209 -191 AGACGCGAAAGAACATGATGGGCGCTGGTGCCCA 20 36 0 GACATGGGCG 0.806487 -124 GACGAGACAGGGGCAGAACCTGATTGGCAGGC 22 9 0 GGCAGCTGAT 0.250623 -292 CAAAGAACTCGCGCAATTCCTGGGCGGTGCGCAG 22 54 1 GGCAACTGGG 0.949618 -247 GCAGCTCGAGGCACAGCGACAACGTCCCCTGCGC 22 82 0 GACAGCAACG 0.223556 -219 AGTTACTGAGGGACATCTGCTGGGCTGCGGCTTG 22 138 1 GACATCTGGG 0.433659 -163 CGACCGAAAACTGCAGCTCGTGGGAGCCCGTCTG 23 29 1 CGCAGGTGGG 0.808054 -49 ACGACCGTGGCGGCAATGCCGTCGAAGTGTGCCG 24 39 0 CGCAACGTCG 0.729778 -80 GTTGCCGTCGGGACCGTGCCTGGGCCCCGGCCAC 24 71 0 GACCGCTGGG 0.475095 -48 ACGGTCCCGACGGCAACCGCGGCGCAGATTAGTG 24 88 1 CGCAACGGCG 0.986595 -31 * **** ***** Masking position 4 Map Score: 63.2113 Number of sites scoring better than the average of aligned sites = 21728 Number in coding regions = 20406 Number in noncoding regions = 1322 Number of orfs with sites within 600 bp upstream = 763 Fraction of orfs with sites within 600 bp upstream = 0.122551 Motif number 8 TATGGGCTGAGGTGGTTGGGCTTCGAATCC 1 269 0 GGTGGTTGGG 0.950809 -32 GCAAGGTTGCGGGGGTTTGCTTGCTTCCGG 3 14 1 GGGGGTTTGC 0.971678 -243 AAGAAGAATTGGTGGCTGTCCTAGCGGCAA 3 104 0 GGTGGCTGTC 0.753023 -153 CACGTCATACGGGGTTTTGTTGCAGTCAGC 3 211 0 GGGGTTTTGT 0.762826 -46 CACGCATCTCGGTGTTTGGGGTGATAGCGG 4 41 1 GGTGTTTGGG 0.900476 -110 AGCATCTGCTGGGGGTTTGCTGATG 7 6 0 GGGGGTTTGC 0.971678 -295 GGAGCGCACCGGTGTCGGGCTCGTCTTGGG 7 224 0 GGTGTCGGGC 0.81033 -77 GATCTGCGCCCGGGTTTGGCGGCCGACGTC 12 15 0 CGGGTTTGGC 0.749869 -253 GAGCTTGCCGGGCGGCTGGGCATGAGCAAG 12 102 1 GGCGGCTGGG 0.903358 -166 GTATCAAAGCGGCGTTTTGCCGTCTCTGTA 15 198 0 GGCGTTTTGC 0.775355 -103 GGGGCAAAGTGGGGGATTGTGGGGTATGGT 15 237 1 GGGGGATTGT 0.796703 -64 GGGGGATTGTGGGGTATGGTGGCTGAGGTG 15 247 1 GGGGTATGGT 0.853157 -54 TGGTGGCTGAGGTGTTTGGGTGAGATGGAT 15 263 1 GGTGTTTGGG 0.900476 -38 AACCCGGTCCGGTGTCCGGCAAGCCCAGCG 16 46 1 GGTGTCCGGC 0.887162 -255 GATCGTAACCGGTGGCATGCCGAACGGGAA 16 134 0 GGTGGCATGC 0.774192 -167 TCGTCGAAGGGGTGGACGGCATCGGGGATC 19 18 1 GGTGGACGGC 0.883757 -283 GATCGCCCTCGGGCGATGGCCAAGGTGCAC 19 44 1 GGGCGATGGC 0.876125 -257 TCGACGGGTCGGTGTCTTGCCCGGATCTGT 19 158 1 GGTGTCTTGC 0.918907 -143 CCGGACGTATGGGGGATGGCCGACGAGTTC 19 190 1 GGGGGATGGC 0.984121 -111 AGAACATGATGGGCGCTGGTGCCCATCATG 20 31 0 GGGCGCTGGT 0.75783 -129 GTAAGTTGCGGGGGGTAGGCGAAGTTCGCC 22 247 1 GGGGGTAGGC 0.938986 -54 ********** Masking position 2 Map Score: 26.0329 Number of sites scoring better than the average of aligned sites = 4184 Number in coding regions = 3860 Number in noncoding regions = 324 Number of orfs with sites within 600 bp upstream = 288 Fraction of orfs with sites within 600 bp upstream = 0.0462576 Motif number 9 ACTATGCGGCCGCCCTCGCGGGTGGCGCCGAT 1 53 1 CGCCTCGGGG 0.872335 -248 TGTCGTCGTGCGCCCCCGTAGCTCAGGGGATA 1 177 0 CGCCCCGAGC 0.728604 -124 CTCTGGCGGGGCCCCATGGCGCAACGTGTCGT 1 203 0 GCCCATGCGC 0.490087 -98 CGCCAGAGTAGCGCATCGCGGCTACCCACTGA 1 227 1 GCGATCGGGC 0.535093 -74 TGGCGATCGCAAGCGCGGCGGAGCCGGGT 2 8 1 CGCAGCGGGC 0.904364 -210 GTGCCGACCCGCCGCACCCGGCTCCGCCGCGC 2 23 0 GCCCACCGGC 0.484829 -195 GGGTGGCGATCGCAAGCGCGGCGGAGCCGGGT 2 65 1 CGCAGCGGGC 0.904364 -153 GTGCCGACCCGCCGCACCCGGCTCCGCCGCGC 2 80 0 GCCCACCGGC 0.484829 -138 GGGTGGCGATCGCAAGCGCGGCGGAGCCGGGT 2 122 1 CGCAGCGGGC 0.904364 -96 GTGCCGACCCGCCGCACCCGGCTCCGCCGCGC 2 137 0 GCCCACCGGC 0.484829 -81 GGGTGGCGATCGCAAGCGCGGCGGAGCCGGGT 2 179 1 CGCAGCGGGC 0.904364 -39 GTGCCGACCCGCCGCACCCGGCTCCGCCGCGC 2 194 0 GCCCACCGGC 0.484829 -24 CCAGGAAGCGGGCTATCCTCGGAGCCGTCCAG 3 44 1 GGCATCCCGG 0.491916 -213 GGAGCCGTCCAGCAATCGCAGCATCTGCATAC 3 64 1 AGCATCGAGC 0.402736 -193 AAGAATTGGTGGCTGTCCTAGCGGCAAGGCAG 3 99 0 GGCGTCCAGC 0.838527 -158 CGATGATTGGCGCACTCGGCGATTTGGCTGAC 3 185 1 CGCCTCGCGA 0.80777 -72 GATGCGTGCGGACATTCCCGGCGAGCCGTCTC 4 17 0 GACTTCCGGC 0.300609 -134 ATCGGTGGCCGCCCGTCGTGGCGTGCCGAGAA 4 116 0 GCCGTCGGGC 0.957539 -35 ACCGCTGGTGCACAGTTCGGGCGTCGGTAAGC 5 14 0 CACGTTCGGC 0.606355 -76 CGTTAGGGTCCGCGCTCGCGGGAAGAAGGTTG 5 66 1 CGCCTCGGGG 0.872335 -24 CTGAGAGCTGAACACTCGCCGAACGTGCAACA 6 58 0 AACCTCGCGA 0.12416 -26 CTTGATCGTTCGCCGACGCAGCATCTGCTGGG 7 23 0 CGCGACGAGC 0.61318 -278 CTCGCCGGCGCAAAGTCCAAGCCGCGGGTCAT 7 107 0 CAAGTCCAGC 0.126712 -194 CGGCGAGACGCGCCGACGCCGCAACAAACCCT 7 132 1 CGCGACGCGC 0.858443 -169 TGCAGCGAGTACGGGTCGGCGCAGGGTTTGTT 7 154 0 ACGGTCGCGC 0.165521 -147 TCCAGCCCTGCCCACCTGGCGCGGTTCGCCAC 7 251 1 CCCCCTGCGC 0.655458 -50 TGGGATATAAGGCTGTCGTGGCGAACCGCGCC 7 268 0 GGCGTCGGGC 0.985718 -33 TGCCCGCTTGAGGATTCTCCGATA 8 3 1 CCCCTTGGGA 0.564757 -82 ATTCTCCGATACCACTCCGGGCGCCGCTGACA 8 24 1 ACCCTCCGGC 0.794775 -61 CGATGCTTGCCGCGCGTAGCCGCGCGAGCT 9 9 1 GCCCGCGAGC 0.63025 -46 TCGTCGTGACCGCGGCTCCGGCG 10 51 1 CGCGCTCGGC 0.620599 -13 CCGAGGCGATATCCATCGCGGCGCGCAGGATC 12 41 0 ATCATCGGGC 0.223717 -227 TCGGTGAAGGGGCTCTCGGGGCTGTCCATCGG 12 69 1 GGCCTCGGGC 0.984075 -199 AGCCGCCCGGCAAGCTCGCCGATGGACAGCCC 12 87 0 CAACTCGCGA 0.107895 -181 AGCAAGTCGGGCCTGTTCCGGCATTTCGGCGC 12 126 1 GCCGTTCGGC 0.846647 -142 AGCTGCAGCTGCTCCTTGGCGCCGAAATGCCG 12 144 0 GCTCTTGCGC 0.0899257 -124 CTCGACGGTCGCCAGCTGCAGCTGCTCCTTGG 12 157 0 GCCGCTGAGC 0.356053 -111 TGCAGCTGGCGACCGTCGAGGCCGCCGTGAGC 12 169 1 GACGTCGGGC 0.946918 -99 CGGCTTCGAACACGCTCACGGCGGCCTCGACG 12 182 0 CACCTCAGGC 0.204472 -86 TGTTCGAAGCCGAGGTCGTGGCTCCCGCGATG 12 202 1 CGAGTCGGGC 0.88879 -66 CCCGGTCCACCCCGGGCGGCGCTGCCATCGCG 12 227 0 CCCGGCGCGC 0.89387 -41 TGCGTGACCGCTCGCTCGGGGCCCGGG 13 6 0 CTCCTCGGGC 0.812022 -97 GGTCGTCACCGGCTGTCGGCGATATTGAGTCC 15 61 1 GGCGTCGCGA 0.823707 -240 CGGTTTGAGCCCCAGTTGTGCCCCACTTGGCC 15 92 1 CCCGTTGGCC 0.173077 -209 GCAAATGGGTGGCAAGTGGGGCCAAGTGGGGC 15 111 0 GGCAGTGGGC 0.651805 -190 TCAGAAAACCGCATGTCGCCGGGCAAATGGGT 15 133 0 GCAGTCGCGG 0.337597 -168 TGAAGCGCGCGGCTAGCCCGGCTACGACCTCA 15 162 0 GGCAGCCGGC 0.81737 -139 CCAGCCGGCGCCCCATCGGAGCCAGCGAACCC 16 19 1 CCCATCGAGC 0.828465 -282 ATCGCCGCCCGACTATCCCGGCAAGACGCTGG 16 70 0 GACATCCGGC 0.790753 -231 CCGATGACGGCGAAATCGCCGCCCGACTATCC 16 84 0 CGAATCGCGC 0.68772 -217 CCACCGGTTACGATCTTGCCGACCATGGCCCC 16 149 1 CGACTTGCGA 0.0851124 -152 TTACTGTATCCGCGGCCGACGCTATGGAGCCG 16 268 0 CGCGCCGCGC 0.917293 -33 GCCGCCCCGCAACGCTTCTGGCCGGGCATCGG 17 35 1 AACCTTCGGC 0.161524 -60 ATGCCGTCCACCCCTTCGACGAACCCATC 19 8 0 CCCTTCGCGA 0.185904 -293 ATCGCCCGAGGGCGATCCCCGATGCCGTCCAC 19 29 0 GGCATCCCGA 0.497073 -272 GGCGCTGGCACCCCGTCCACGCCGGCATGGTG 19 71 0 CCCGTCCCGC 0.949014 -230 CGCAGTTGTGCACCGCCGAGGCCGACGCGCCC 19 113 1 CACGCCGGGC 0.82155 -188 ACGTCCGGTAACAGATCCGGGCAAGACACCGA 19 166 0 ACAATCCGGC 0.180765 -135 CCGACGAGTTCGCCATCGGCGATGGCAGGACT 19 209 1 CGCATCGCGA 0.674959 -92 CGACTAACCGGCCGCTGCCAGCAGTCCTGCCA 19 231 0 GCCCTGCAGC 0.155696 -70 TTAGTCGGCCGACGGTGGCCGCTGGCCAGGAT 19 256 1 GACGTGGCGC 0.299074 -45 AGAGCAGACCCGAGATCCTGGCCAGCGGCCAC 19 270 0 CGAATCCGGC 0.628332 -31 GCGTCTACTCGCCGGCTCCGGCGGTTCGCGGT 20 64 1 GCCGCTCGGC 0.542799 -96 CCCACATGCTGGCTGTCGCGGGCACCGCGAAC 20 87 0 GGCGTCGGGG 0.883357 -73 TAGCCGGGCGCGGCCAAAATTTGC 21 3 1 GCCGGCGGGC 0.512572 -39 GGTGCGCAGGGGACGTTGTCGCTGTGCCTCGA 22 79 1 GGAGTTGCGC 0.487854 -222 CGGGGCTCAGGCAGCTCGAGGCACAGCGACAA 22 94 0 GCACTCGGGC 0.880318 -207 CTGCCTGAGCCCCGCTTGACGCAGCCAGTTAC 22 112 1 CCCCTTGCGC 0.877824 -189 AGGCGAAGTTCGCCGTTGAAGCCGTGCCAGAA 22 263 1 CGCGTTGAGC 0.677152 -38 GGCCCATTCCCGAGAGTTCTGGC 22 288 0 GCCATTCCGA 0.155193 -13 ACCGAAAACTGCAGCTCGTGGGAGCCCGTCTG 23 31 1 GCACTCGGGG 0.43948 -47 TCCTGCCAGCGTCGATCCACGCGGCACACTTC 24 18 1 GTCATCCCGC 0.3795 -101 GCATTGCCGCCACGGTCGTGGCCGGGGCCCAG 24 54 1 CACGTCGGGC 0.945474 -65 CGGTCCCGACGGCAACCGCGGCGCAGATTAGT 24 89 1 GGCACCGGGC 0.896787 -30 *** **** *** Masking position 11 Map Score: 87.5627 Number of sites scoring better than the average of aligned sites = 52956 Number in coding regions = 49499 Number in noncoding regions = 3457 Number of orfs with sites within 600 bp upstream = 1371 Fraction of orfs with sites within 600 bp upstream = 0.220206 Motif number 10 TTGCGATCGCCACCCAATCCAAACCGTGCCG 2 49 0 CACCCATCCA 0.993908 -169 TTGCGATCGCCACCCAATCCAAACCGTGCCG 2 106 0 CACCCATCCA 0.993908 -112 TTGCGATCGCCACCCAATCCAAACCGTGCCG 2 163 0 CACCCATCCA 0.993908 -55 CAACCGCTATCACCCCAAACACCGAGATGCG 4 43 0 CACCCCAACA 0.891586 -108 CTTGAGGATTCTCCGATACCACTCCGGGCGC 8 17 1 CTCCGAACCA 0.797145 -68 TGAGGGCGCGCACCCGGTCCACCCCGGGCGG 12 240 0 CACCCGTCCA 0.983514 -28 CGATGCCGTCCACCCCTTCGACGAACCCATC 19 11 0 CACCCCTCGA 0.958739 -290 TTGGCGCTGGCACCCCGTCCACGCCGGCATG 19 74 0 CACCCCTCCA 0.993786 -227 CGCACTTCCTCCCACACCATGGCCGCTAG 20 141 0 CTCCCAACCA 0.964343 -19 ****** **** Masking position 11 Map Score: 14.3713 Number of sites scoring better than the average of aligned sites = 384 Number in coding regions = 360 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604 Motif number 11 CTTGCGATCGCCACCCAATCCAAACCGTGC 2 51 0 CCACCCAATC 0.989356 -167 CTTGCGATCGCCACCCAATCCAAACCGTGC 2 108 0 CCACCCAATC 0.989356 -110 CTTGCGATCGCCACCCAATCCAAACCGTGC 2 165 0 CCACCCAATC 0.989356 -53 GAGCGAGCGGTCACGCAATCCGGCATTGAC 13 21 1 TCACGCAATC 0.813494 -82 AGCCACCATACCCCACAATCCCCCACTTTG 15 241 0 CCCCACAATC 0.849214 -60 CAAATCCATCTCACCCAAACACCTCAGCCA 15 266 0 TCACCCAAAC 0.850833 -35 ACTCACCGCGCACTCCCCTTGCGGG 17 6 1 CCGCGCACTC 0.890676 -89 CGCACTTCCTCCCACACCATGGCCGCT 20 143 0 CCTCCCACAC 0.947816 -17 GCCTGCCAATCAGGTTCTGCC 22 2 1 CCTGCCAATC 0.850616 -299 TGCCGGAACGCCTCCCGCTCTTCGTCGGAA 22 173 1 CCTCCCGCTC 0.895695 -128 CCACACACACTAATCTGCGC 24 109 0 CCACACACAC 0.872092 -10 ********** Masking position 6 Map Score: 10.9663 Number of sites scoring better than the average of aligned sites = 492 Number in coding regions = 440 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 12 GTAGCGCATCGCGGCTACCCACTGACCACC 1 234 1 GCGGCTACCC 0.886562 -67 GGACGGCTCCGAGGATAGCCCGCTTCCTGG 3 44 0 GAGGATAGCC 0.834318 -213 TCTTGTGGACGAGGTTCGCCGTATTCGCCG 3 130 1 GAGGTTCGCC 0.975671 -127 TCCGGCGAGACGGCTCGCCGGGAATGTCC 4 10 1 ACGGCTCGCC 0.914176 -141 TGGGGTGATAGCGGTTGACCTGGCATAATC 4 57 1 GCGGTTGACC 0.752261 -94 CATATTAGTGGAGTCTAGCCTAAGCTGATT 7 58 1 GAGTCTAGCC 0.881496 -243 CTGATTAGTGGAGTCTAACCTAACAATGAC 7 82 1 GAGTCTAACC 0.553162 -219 CGGCGTCGGCGCGTCTCGCCGGCGCAAAGT 7 123 0 GCGTCTCGCC 0.983224 -178 CCCACCTGGCGCGGTTCGCCACGACAGCCT 7 261 1 GCGGTTCGCC 0.992098 -40 ACTCACCGGGGCGGTTCACCCAGCCGGGTC 15 35 1 GCGGTTCACC 0.954333 -266 ACTGAAGCGCGCGGCTAGCCCGGCTACGAC 15 166 0 GCGGCTAGCC 0.987666 -135 TATCAAAGCGGCGTTTTGCCGTCTCTGTAC 15 197 0 GCGTTTTGCC 0.863267 -104 GGCAAGCCCAGCGTCTTGCCGGGATAGTCG 16 63 1 GCGTCTTGCC 0.910168 -238 GGACGGCATCGGGGATCGCCCTCGGGCGAT 19 31 1 GGGGATCGCC 0.817912 -270 GCCGGCTCCGGCGGTTCGCGGTGCCCGCGA 20 74 1 GCGGTTCGCG 0.907728 -86 GGGGGTAGGCGAAGTTCGCCGTTGAAGCCG 22 257 1 GAAGTTCGCC 0.679476 -44 ********** Masking position 6 Map Score: 25.0352 Number of sites scoring better than the average of aligned sites = 3055 Number in coding regions = 2788 Number in noncoding regions = 267 Number of orfs with sites within 600 bp upstream = 233 Fraction of orfs with sites within 600 bp upstream = 0.0374237 Motif number 13 TGTGATCGGCGCCACCCGCGAGGGCGGCCG 1 59 0 GCCACCCGCG 0.921487 -242 CGCCGCACCCGGCTCCGCCGCGCTTGCGAT 2 16 0 GGCTCCGCCG 0.959418 -202 CGCCGCACCCGGCTCCGCCGCGCTTGCGAT 2 73 0 GGCTCCGCCG 0.959418 -145 CGCCGCACCCGGCTCCGCCGCGCTTGCGAT 2 130 0 GGCTCCGCCG 0.959418 -88 CGCCGCACCCGGCTCCGCCGCGCTTGCGAT 2 187 0 GGCTCCGCCG 0.959418 -31 AACGGTGATCGCCATCAGCGGCGAATACGG 3 148 0 GCCATCAGCG 0.610354 -109 GCTTGGACTTTGCGCCGGCGAGACGCGCCG 7 117 1 TGCGCCGGCG 0.707519 -184 GGCGAGACGCGCCGACGCCGCAACAAACCC 7 133 1 GCCGACGCCG 0.922388 -168 AGCTCGCGCGGCTACGCGCGGCAAGCATCG 9 11 0 GCTACGCGCG 0.396254 -44 ACGGTACCCGGTTACCGGCGGCCGGTAGAC 10 19 0 GTTACCGGCG 0.359541 -45 CCGGTAACCGGGTACCGTCGTCGTCGTGAC 10 31 1 GGTACCGTCG 0.908632 -33 TCGTGACCGCGGCTCCGGCG 10 54 1 GGCTCCGGCG 0.973329 -10 GGGTTTGGCGGCCGACGTCGGCG 12 4 0 GCCGACGTCG 0.9282 -264 CCAGCCGCCCGGCAAGCTCGCCGATGGACA 12 91 0 GGCAAGCTCG 0.458492 -177 GCTGCAGCTGGCGACCGTCGAGGCCGCCGT 12 167 1 GCGACCGTCG 0.722631 -101 CGTGTTCGAAGCCGAGGTCGTGGCTCCCGC 12 200 1 GCCGAGGTCG 0.857491 -68 CCCGGGCGGCGCTGCCATCGCGGGAGCCAC 12 219 0 GCTGCCATCG 0.635046 -49 CCCGGGCCCCGAGCGAGCGGTCACG 13 6 1 GCCCCGAGCG 0.482969 -97 CTTAATGAAAGCCGCCGCCG 13 93 1 GCCGCCGCCG 0.984483 -10 CGCCGTTACCGGCGCCGCCGCC 14 3 0 GGCGCCGCCG 0.986758 -207 CGGCGGCGCCGGTAACGGCGCGCGCCGGTT 14 13 1 GGTAACGGCG 0.7256 -197 CCAGACCTGCGACACCGTCGGCAGGGCTTT 14 152 0 GACACCGTCG 0.766992 -58 GCTCCGATGGGGCGCCGGCTGGCGGCTCTG 16 11 0 GGCGCCGGCT 0.718524 -290 CGGCGATTTCGCCGTCATCGGGCAGACCCG 16 95 1 GCCGTCATCG 0.519377 -206 GGCCATGGTCGGCAAGATCGTAACCGGTGG 16 149 0 GGCAAGATCG 0.602311 -152 AGTGGTGGGCGGCACGGTCAGTAACGTCTG 16 208 1 GGCACGGTCA 0.460842 -93 TTGACTGACGGGCAATATCGGCTCCATAGC 16 250 1 GGCAATATCG 0.0907069 -51 GCGTGGACGGGGTGCCAGCGCCAACCTGAT 19 81 1 GGTGCCAGCG 0.743662 -220 GTTGTGCACCGCCGAGGCCGACGCGCCCGT 19 117 1 GCCGAGGCCG 0.8469 -184 GACCGGATCCGGCACGGGCGCGTCGGCCTC 19 130 0 GGCACGGGCG 0.982037 -171 CGACGAGTTCGCCATCGGCGATGGCAGGAC 19 210 1 GCCATCGGCG 0.881854 -91 CTGGCCAGCGGCCACCGTCGGCCGACTAAC 19 255 0 GCCACCGTCG 0.986009 -46 GAACATGATGGGCACCAGCGCCCATCATGT 20 28 1 GGCACCAGCG 0.961025 -132 TCTACTCGCCGGCTCCGGCGGTTCGCGGTG 20 67 1 GGCTCCGGCG 0.973329 -93 CGCACGGGCCGGCACGACCGAAAACTGCAG 23 15 1 GGCACGACCG 0.881417 -63 AAGTCATCCTGCCAGCGTCGATCCACGCGG 24 12 1 GCCAGCGTCG 0.755166 -107 CGGCATTGCCGCCACGGTCGTGGCCGGGGC 24 52 1 GCCACGGTCG 0.970416 -67 CCGGGGCCCAGGCACGGTCCCGACGGCAAC 24 75 1 GGCACGGTCC 0.558852 -44 ACTAATCTGCGCCGCGGTTGCCGTCGGGAC 24 91 0 GCCGCGGTTG 0.403103 -28 ********** Masking position 9 Map Score: 72.2582 Number of sites scoring better than the average of aligned sites = 34483 Number in coding regions = 33011 Number in noncoding regions = 1472 Number of orfs with sites within 600 bp upstream = 840 Fraction of orfs with sites within 600 bp upstream = 0.134918 Motif number 14 TATGCGGCCGCCCTCGCGGGTGGCGCCGAT 1 55 1 CCCTCGCGGG 0.731461 -246 CATTGTTGTAGCCATGCGTGAGGCTAGATC 1 87 1 GCCATGCGTG 0.586939 -214 CGATGCGCTACTCTGGCGGGGCCCCATGGC 1 215 0 CTCTGGCGGG 0.415731 -86 GTGGGTAGCCGCGATGCGCTACTCTGGCGG 1 226 0 GCGATGCGCT 0.592649 -75 GGCTTCGAATCCGTTGCGGTGGTCAGTGGG 1 251 0 CCGTTGCGGT 0.593182 -50 TGGCGATCGCAAGCGCGGCGGAGCCGG 2 8 1 CGCAAGCGCG 0.71101 -210 CGCAAGCGCGGCGGAGCCGGGTGCGGCGGG 2 18 1 GCGGAGCCGG 0.882021 -200 GGGTGGCGATCGCAAGCGCGGCGGAGCCGG 2 65 1 CGCAAGCGCG 0.71101 -153 CGCAAGCGCGGCGGAGCCGGGTGCGGCGGG 2 75 1 GCGGAGCCGG 0.882021 -143 GGGTGGCGATCGCAAGCGCGGCGGAGCCGG 2 122 1 CGCAAGCGCG 0.71101 -96 CGCAAGCGCGGCGGAGCCGGGTGCGGCGGG 2 132 1 GCGGAGCCGG 0.882021 -86 GGGTGGCGATCGCAAGCGCGGCGGAGCCGG 2 179 1 CGCAAGCGCG 0.71101 -39 CGCAAGCGCGGCGGAGCCGGGTGCGGCGGG 2 189 1 GCGGAGCCGG 0.882021 -29 CGCTGATCACGTCATACGGGGTTTTGTTGC 3 218 0 GTCATACGGG 0.17071 -39 CCCAAACACCGAGATGCGTGCGGACATTCC 4 31 0 GAGATGCGTG 0.191578 -120 GAGCCCGACACCGGTGCGCTCCAGCCCTGC 7 232 1 CCGGTGCGCT 0.70758 -69 GGCTGTCGTGGCGAACCGCGCCAGGTGGGC 7 260 0 GCGAACCGCG 0.352917 -41 TCGGAGAATCCTCAAGCGGGCA 8 3 0 CTCAAGCGGG 0.821794 -82 CGGGGTGGACCGGGTGCGCGCCCTCATGCA 12 245 1 CGGGTGCGCG 0.821384 -23 CCCGGGCCCCGAGCGAGCGGTCACGCA 13 8 1 CCCGAGCGAG 0.623156 -95 CCGAAACGAACCGGCGCGCGCCGTTACCGG 14 21 0 CCGGCGCGCG 0.615892 -189 GAGCTGGTCGGAGGTGCGGG 14 200 1 GAGGTGCGGG 0.858783 -10 TCCGGACTCACCGGGGCGGTTCACCCAGCC 15 30 1 CCGGGGCGGT 0.52779 -271 GGCAAGTGGGGCCAAGTGGGGCACAACTGG 15 103 0 GCCAAGTGGG 0.261478 -198 TTTGCCCGGCGACATGCGGTTTTCTGAGGT 15 138 1 GACATGCGGT 0.316648 -163 CTCTGTACCACTGAAGCGCGCGGCTAGCCC 15 175 0 CTGAAGCGCG 0.707208 -126 CAAGCCCAGCGTCTTGCCGGGATAGTCGGG 16 65 1 GTCTTGCCGG 0.418424 -236 CCGGTGGCATGCCGAACGGGAACCTGGTTA 16 126 0 GCCGAACGGG 0.492204 -175 CCGCGCACTCCCCTTGCGGGCCGCCCCGCA 17 16 1 CCCTTGCGGG 0.928281 -79 CCGGCCAGAAGCGTTGCGGGGCGGCCCGCA 17 30 0 GCGTTGCGGG 0.919832 -65 AACCGTGTTACCGATGCCCGGCCAGAAGCG 17 47 0 CCGATGCCCG 0.813402 -48 AGGGCGATCCCCGATGCCGTCCACCCCTTC 19 23 0 CCGATGCCGT 0.478384 -278 GGCCGACGCGCCCGTGCCGGATCCGGTCGA 19 132 1 CCCGTGCCGG 0.726936 -169 CGTCCGGTAACAGATCCGGGCAAGACACCG 19 167 0 CAGATCCGGG 0.218468 -134 CACATGCTGGCTGTCGCGGGCACCGCGAAC 20 87 0 CTGTCGCGGG 0.415478 -73 GCTCCGGGCCCACATGCTGGCTGTCGCGGG 20 97 0 CACATGCTGG 0.108421 -63 TAGCCGGGCGCGGCCAAAATTT 21 3 1 GCCGGGCGCG 0.822876 -39 CAATTCCTGGGCGGTGCGCAGGGGACGTTG 22 67 1 GCGGTGCGCA 0.3035 -234 AACTGGCTGCGTCAAGCGGGGCTCAGGCAG 22 112 0 GTCAAGCGGG 0.79957 -189 CAACAGCGGTAAGTTGCGGGGGGTAGGCGA 22 239 1 AAGTTGCGGG 0.0741279 -62 GTCGTGCCGGCCCGTGCGAGGC 23 3 0 CCCGTGCGAG 0.654277 -75 GCAGTTTTCGGTCGTGCCGGCCCGTGCGAG 23 13 0 GTCGTGCCGG 0.69569 -65 ********** Masking position 7 Map Score: 41.7722 Number of sites scoring better than the average of aligned sites = 24238 Number in coding regions = 22286 Number in noncoding regions = 1952 Number of orfs with sites within 600 bp upstream = 1028 Fraction of orfs with sites within 600 bp upstream = 0.165114 Motif number 15 GCCGATCACATTGTTGTAGCCATGCGTGAGG 1 79 1 TTGTTGAGCC 0.977192 -222 GGCACAAGGGTTGATCTAGCCTCACGCATGG 1 98 0 TTGATCAGCC 0.851811 -203 ATACGGGGTTTTGTTGCAGTCAGCCAAATCG 3 204 0 TTGTTGAGTC 0.95401 -53 AAGCCGCATATTAGTGGAGTCTAGCCTAAGC 7 52 1 TTAGTGAGTC 0.859329 -249 CCTAAGCTGATTAGTGGAGTCTAACCTAACA 7 76 1 TTAGTGAGTC 0.859329 -225 TGCGCAAAAGTTGTTGGAGCCGAAACGAACC 14 39 0 TTGTTGAGCC 0.977192 -171 TGAGCCCCGCTTGACGCAGCCAGTTACTGAG 22 117 1 TTGACGAGCC 0.901963 -184 ****** **** Masking position 8 Map Score: 0.681408 Number of sites scoring better than the average of aligned sites = 149 Number in coding regions = 137 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863