AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00561_mtub_reg_100.orf -o00561_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: frr 171 frr Input sequences: #1 Rv0144 101 hypothetical protein Rv0144 #2 Rv0145 88 hypothetical protein Rv0145 #3 Rv0146 42 hypothetical protein Rv0146 #4 Rv0147 94 hypothetical protein Rv0147 #5 Rv0223c 98 hypothetical protein Rv0223c #6 Rv0224c 35 hypothetical protein Rv0224c #7 glpQ2 300 glpQ2 #8 psd 60 psd #9 Rv0439c 293 hypothetical protein Rv0439c #10 gpdA1 60 gpdA1 #11 Rv0565c 77 hypothetical protein Rv0565c #12 Rv0566c 281 hypothetical protein Rv0566c #13 adhB 98 adhB #14 Rv0767c 201 hypothetical protein Rv0767c #15 rpmE 150 rpmE #16 prfA 89 prfA #17 rfe 83 rfe #18 gap 300 gap #19 fadD11' 176 fadD11' #20 pgsA2 196 pgsA2 #21 Rv1861 300 hypothetical protein Rv1861 #22 adhA 73 adhA #23 murE 22 murE #24 hypothetical 267 hypothetical protein Rv2160c #25 Rv2182c 85 hypothetical protein Rv2182c #26 Rv2184c 119 hypothetical protein Rv2184c #27 Rv2250c 120 hypothetical protein Rv2250c #28 adhE2 300 adhE2 #29 yjcE 133 yjcE #30 Rv2484c 228 hypothetical protein Rv2484c #31 thrS 300 thrS #32 pgsA3 30 pgsA3 #33 cdsA 22 cdsA #34 ddlA 77 ddlA #35 gpdA2 118 gpdA2 #36 fecB 214 fecB #37 adhC 69 adhC #38 Rv3292 30 hypothetical protein Rv3292 #39 aldB 26 aldB #40 lpdA 202 lpdA #41 glpK 49 glpK #42 Rv3697c 250 hypothetical protein Rv3697c #43 Rv3816c 75 hypothetical protein Rv3816c #44 Rv3843c 300 hypothetical protein Rv3843c Motif number 1 ********** No masking Map Score: -1.8898e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 CTATCCGACGATCAGCAGCGCAACCATGGC 1 28 1 ATCAGCAGCG 0.774438 -74 GACGTACGCGATCACCGCCGCTGTGCGGCG 1 67 1 ATCACCGCCG 0.896355 -35 ATCACCGCCGCTGTGCGGCGAGGAGATCCG 1 77 1 CTGTGCGGCG 0.890336 -25 AGACCTAACCGGCGGCCCCGAAGCGTAGTG 2 14 1 GGCGGCCCCG 0.553159 -75 GCTCGGCATCGTCGCCGGCGGTCATGGCGT 5 54 0 GTCGCCGGCG 0.966149 -45 CGACGATGCCGAGCGCAGCGATGAGGAGGA 5 70 1 GAGCGCAGCG 0.698732 -29 AGCGATGAGGAGGAGCGGCGCAT 5 86 1 AGGAGCGGCG 0.90187 -13 CTGGCACACCCTACGGCCCGCTAGGCTA 6 18 0 CCCTACGGCC 0.730121 -18 TTGCCGCCGGGCCACCGACGTTCAGCATCA 7 77 0 GCCACCGACG 0.89186 -224 ATCGTTTTGGGCCTTCCCCGCCTTGCCGCC 7 99 0 GCCTTCCCCG 0.55139 -202 GCCCAAAACGATGGCCGGCCCATGCACCGT 7 117 1 ATGGCCGGCC 0.521912 -184 CGGCGCGGTCGGCGACGACGGTGCATGGGC 7 134 0 GGCGACGACG 0.91087 -167 CGTCGTCGCCGACCGCGCCGTATGGGAGCG 7 144 1 GACCGCGCCG 0.962741 -157 CGCGCCGTATGGGAGCGCCCATTACCACTG 7 157 1 GGGAGCGCCC 0.683603 -144 GCACCGCTCTGTCGGCGACGGTTCCTGTGC 7 206 0 GTCGGCGACG 0.968852 -95 CCACGCCGGGGGCAGCACCGCTCTGTCGGC 7 220 0 GGCAGCACCG 0.883203 -81 CGCCGGGGGCGTCCACGCCGGGGGCAGCAC 7 232 0 GTCCACGCCG 0.981833 -69 CGGCGTGGACGCCCCCGGCGGCCGAGGCTA 7 242 1 GCCCCCGGCG 0.98038 -59 GGTAGGTGCGCCACCGTCGCTCATC 7 286 0 GTGCGCCACC 0.79876 -15 GATCCTAGTGCCGTGCACCCAACCTGCGGC 8 18 1 CCGTGCACCC 0.462051 -43 CCGTCACCCGGTGACCCCCGTTTCATCCCC 9 33 0 GTGACCCCCG 0.846428 -261 ACCGGGTGACGGCAACCCCGCTACTTACGC 9 51 1 GGCAACCCCG 0.935672 -243 CGCGGGCACTGCGCCCGGCCAGCGTAAGTA 9 72 0 GCGCCCGGCC 0.878126 -222 CGGGCGCAGTGCCCGCGACGGACGGCTCAA 9 85 1 GCCCGCGACG 0.981947 -209 CGCTGCCACTCGCTGCGACGACGGGCCTGG 9 123 1 CGCTGCGACG 0.905483 -171 CGACGGGCCTGGCCTCACCGTCCCGACCTA 9 141 1 GGCCTCACCG 0.642106 -153 GTGCAAGAAGCCCCGCACCGGGTCATGCCC 9 223 1 CCCCGCACCG 0.92866 -71 GTTCGACCGTGTCCTCGGCCCTCCGATCCG 9 256 1 GTCCTCGGCC 0.712961 -38 GAAATCCTGGATCAGCGACCAGGGTAGCCA 11 44 0 ATCAGCGACC 0.739664 -34 ACGGTCGGTAGACAGCGGCGCGACACCCGC 12 38 0 GACAGCGGCG 0.947249 -244 GCGACGTTGGGGCACCAACGCGCGGGCGTG 12 70 1 GGCACCAACG 0.667093 -212 CGCCGGGCATGGCCACGCCCGCGCGTTGGT 12 83 0 GGCCACGCCC 0.747173 -199 CGTGGCCATGCCCGGCGCCCATGCCCGGAT 12 96 1 CCCGGCGCCC 0.913812 -186 CGAATCCTGCACCTGCCACCACGGTCAAGC 12 130 0 ACCTGCCACC 0.481535 -152 CGGATTTACAGTCCGCTCCCATTGGCCGCT 12 180 1 GTCCGCTCCC 0.569082 -102 GGCAGGTTGCCCGAGCGGCCAATGGGAGCG 12 193 0 CCGAGCGGCC 0.829929 -89 CGCTCGGGCAACCTGCCGCCTAGCAGGGTA 12 206 1 ACCTGCCGCC 0.720198 -76 CTGAGTGTAGGTCAACGGCGCTAGGGCGT 13 10 0 GTCAACGGCG 0.950535 -89 TAGCCTCGGCCGGAACGCCGACTGGCTGAG 13 35 0 CGGAACGCCG 0.848522 -64 TCCGCAAGGCCGCTACACCGTCCTGACCGA 14 83 1 CGCTACACCG 0.665338 -119 CCGATGCACCAGGGGCCACGTCGCGTCGCG 14 109 1 AGGGGCCACG 0.644955 -93 ACATGGGACTGTCCGCGACGCGACGTGGCC 14 122 0 GTCCGCGACG 0.983484 -80 TCCGGCGAGACGGCTCGCCGGGAATGTCCG 15 11 1 CGGCTCGCCG 0.628333 -140 GTTCTCGGCACGCCACGACGGGCGGCCACC 15 115 1 CGCCACGACG 0.907002 -36 CGCCACGACGGGCGGCCACCGATCACAGAG 15 125 1 GGCGGCCACC 0.85149 -26 CTGGCTTACCGACGCCCGAACTGTGCA 16 8 1 ACCGACGCCC 0.730538 -82 CCTAACGCGAACCGACGCCCGTCCTGTACC 16 43 0 ACCGACGCCC 0.730538 -47 ACATGAGCCCCGCCGCACCGGGCCGTTTCC 18 68 1 CGCCGCACCG 0.505598 -233 GCCGCCGCGTCCCTACCGCGGACATTGCGC 18 130 0 CCCTACCGCG 0.761145 -171 CACCGATCCCAGCCGCCGCGTCCCTACCGC 18 141 0 AGCCGCCGCG 0.884713 -160 GATCGGTGGGGTGAGCGCCCGGCTTCTCAA 18 163 1 GTGAGCGCCC 0.933294 -138 TCAAAGCGAGGGGAGCCCCGGGACTCTTAC 18 189 1 GGGAGCCCCG 0.833732 -112 GATCAGTGACACCCGCCGCCTTCGGCCGGT 18 217 0 ACCCGCCGCC 0.878864 -84 CCCGTCAGCCGGCCACACCCACCGGGCTTC 19 20 1 GGCCACACCC 0.734313 -157 GTTGGGGCCAGACAGCGCCGTGAAGCCCGG 19 41 0 GACAGCGCCG 0.959286 -136 GTCTGGCCCCAACCGCAGCGAAGCCTACGA 19 58 1 AACCGCAGCG 0.644957 -119 CCTGGATTTAACCTGCGCCCGTCCGAAGCG 19 98 0 ACCTGCGCCC 0.87898 -79 TGCGGCCATGGGCCGCCACGGGTCTCG 19 160 1 GGCCGCCACG 0.938728 -17 GCTGCCCAGCGTAAGCGCCGA 20 2 1 CTGCCCAGCG 0.636127 -195 CCCGAAATTTCGCAGTGGCGTTACGCTCGG 20 28 0 CGCAGTGGCG 0.331823 -169 GGCAGAAAATCGCAGTGGCGTTACGCTCGC 20 56 1 CGCAGTGGCG 0.331823 -141 TCGCGGCTAGGGGTGCCCCCACAGCCCGCC 20 82 1 GGGTGCCCCC 0.510996 -115 GGTGCCCCCACAGCCCGCCGTTTCGGCGCG 20 93 1 CAGCCCGCCG 0.76249 -104 CCTGGCGACGATGCGCGCCGAAACGGCGGG 20 106 0 ATGCGCGCCG 0.954535 -91 CCCGGCTCCTCAGCCCGCCGTTTCGGCGCG 20 149 1 CAGCCCGCCG 0.76249 -48 CCTGGCGACGATGCGCGCCGAAACGGCGGG 20 162 0 ATGCGCGCCG 0.954535 -35 TGTACAAGTCGCCAACCACGACCCAC 21 7 0 GCCAACCACG 0.744799 -294 CCCGCTGCCCGTCCCCGGCGCGACCTATGG 21 49 0 GTCCCCGGCG 0.98205 -252 CGTGCGAAACGCCGACACCGTTGAACTCCA 21 103 1 GCCGACACCG 0.816518 -198 ACAGCAGAAAAGCGCCCACGAAAACACCGT 21 150 1 AGCGCCCACG 0.620883 -151 AACGTGTGTGGCGCCCCACGGTGTTTTCGT 21 167 0 GCGCCCCACG 0.753777 -134 GCCACAACCCACCGACACCGTCACTACCCT 21 204 1 ACCGACACCG 0.541704 -97 AATTGAGTGTGACTGCGGCGGCCGGCGACG 22 35 1 GACTGCGGCG 0.925792 -39 GACTGCGGCGGCCGGCGACGGTAGCGGCAT 22 45 1 GCCGGCGACG 0.96599 -29 GTGTGCGCGCCCTGTCGGTAGG 23 3 1 GTGCGCGCCC 0.924826 -20 CGCCGACGTCGGCCGCCAAACCCGGGC 24 8 1 GTCGGCCGCC 0.917313 -260 GGCGCGCAGGATCTGCGCCCGGGTTTGGCG 24 24 0 ATCTGCGCCC 0.888327 -244 GGCGCAGATCCTGCGCGCCGCGATGGATAT 24 35 1 CTGCGCGCCG 0.919875 -233 CTCGCCGATGGACAGCCCCGAGAGCCCCTT 24 75 0 GACAGCCCCG 0.916138 -193 CTTGCTCATGCCCAGCCGCCCGGCAAGCTC 24 102 0 CCCAGCCGCC 0.861715 -166 CGAACACGCTCACGGCGGCCTCGACGGTCG 24 178 0 CACGGCGGCC 0.727823 -90 CCGAGGTCGTGGCTCCCGCGATGGCAGCGC 24 211 1 GGCTCCCGCG 0.916471 -57 CTCCCGCGATGGCAGCGCCGCCCGGGGTGG 24 223 1 GGCAGCGCCG 0.824678 -45 CGCGCACCCGGTCCACCCCGGGCGGCGCTG 24 235 0 GTCCACCCCG 0.961814 -33 GGTGGACCGGGTGCGCGCCCTCATGCATGC 24 248 1 GTGCGCGCCC 0.924826 -20 GACTACCTGCGCGGGCAGCGGC 25 3 0 GCGGGCAGCG 0.822641 -83 CCTCCCTCTCGCCCACACCGGATGGTGTCT 25 63 0 GCCCACACCG 0.895276 -23 GTGATTCCGGTACGCCGGCTCAGGCCC 26 8 1 CGGTACGCCG 0.746034 -112 CTCTGGCGTCCGCCACCGCGGTATGTGATG 26 80 1 CGCCACCGCG 0.653106 -40 CACTCGCTGGCCGGCCCCGGCATCACATA 26 101 0 GCCGGCCCCG 0.97474 -19 CGTGGTCTGCCCCCGACAGGGCGG 27 5 1 GTCTGCCCCC 0.929321 -116 GCGCAGGTGCAGCTGCGCCCGTCCGCCCTG 27 27 0 AGCTGCGCCC 0.891474 -94 GCAGCCCGAACTCGACCCCGCGCAGGTGCA 27 46 0 CTCGACCCCG 0.869547 -75 GTCGAGTTCGGGCTGCTCCGAGTCCGCTAG 27 60 1 GGCTGCTCCG 0.437499 -61 AGTCCGCTAGGCCCACAACCTGCTTCAGCA 27 80 1 GCCCACAACC 0.481915 -41 AACCTGCTTCAGCAACGACCGGACGCCATC 27 96 1 AGCAACGACC 0.483733 -25 ACTCATCTGCGCCGCTCCTCCTCA 28 5 1 ATCTGCGCCG 0.953038 -296 GCTCTGCATCGTCACCGGCGCGACTCATCT 28 42 1 GTCACCGGCG 0.961592 -259 GGCGCGACTCATCTGCGCCGCTCCTGCTCA 28 58 1 ATCTGCGCCG 0.953038 -243 GCTCTGCATCGTCACCGGCGCGACTCATCT 28 95 1 GTCACCGGCG 0.961592 -206 GGCGCGACTCATCTGCGCCGCTCCTGCTCA 28 111 1 ATCTGCGCCG 0.953038 -190 GCTCTGCATCGTCACCGGCGCGACTCATCT 28 148 1 GTCACCGGCG 0.961592 -153 GGCGCGACTCATCTGCGCCGCTCCTGCTCA 28 164 1 ATCTGCGCCG 0.953038 -137 GCTCTGCATCGTCACCGGCGCGACTCATCT 28 201 1 GTCACCGGCG 0.961592 -100 GGCGCGACTCATCTGCGCCGCTCCTCCTCA 28 217 1 ATCTGCGCCG 0.953038 -84 GCTCTGCATCGTCACCGGCGCGCATGGTCA 28 254 1 GTCACCGGCG 0.961592 -47 GGCGCGCATGGTCAGCGACGCTACACCGTA 28 270 1 GTCAGCGACG 0.964659 -31 ACATTGTGCCGTGCGCCACGTTGTCAGCGG 29 52 1 GTGCGCCACG 0.910118 -82 CGGCACCCTGGCGAACACCGCGAGATGTTG 29 94 0 GCGAACACCG 0.588858 -40 GCACCGATGCCGCGGCCACGACCGACGAAA 30 46 0 CGCGGCCACG 0.867665 -183 ATGATCCACCCGCAGCACCGATGCCGCGGC 30 60 0 CGCAGCACCG 0.774408 -169 CATCGGCTTTCACCACCGCGTCATCGCGAC 30 96 1 CACCACCGCG 0.703435 -133 GCTTCAAACCCGCCACCGCCACGCACCACA 30 143 0 CGCCACCGCC 0.542273 -86 CACAAACTCTGTCACCGCCGATCAGACCTC 30 175 0 GTCACCGCCG 0.970209 -54 GGCCACGACCCCGCGCGGGT 30 219 0 GGCCACGACC 0.883871 -10 GTAGCGGCCCGTCGGCGGCGACCGCCGCCA 31 29 1 GTCGGCGGCG 0.965467 -272 ACGGGGAGCGGTCAGCGACGCTGGCGGCGG 31 50 0 GTCAGCGACG 0.964659 -251 CCAGCAGGACGTCGACGACGGACAGTCGAT 31 93 0 GTCGACGACG 0.887796 -208 GGTACCGATCGCCCACACCGGTGATCGAAA 31 187 1 GCCCACACCG 0.895276 -114 CGGGGCGCACGTCGACGACCGTAAGCCGAG 31 230 0 GTCGACGACC 0.756176 -71 GGTCGTCGACGTGCGCCCCGATAGCATGGT 31 240 1 GTGCGCCCCG 0.960838 -61 GATTTTGTTGCTGAGCGGCCG 33 2 0 CTGAGCGGCC 0.842042 -21 TCGCACGGGCCGGCACGACCGAAAACTGCA 34 14 1 CGGCACGACC 0.586791 -64 CAGGCAGACGGGCTCCCACGAGCTGCAGTT 34 37 0 GGCTCCCACG 0.807623 -41 TGCCGTCGAAGTGTGCCGCGTGGATCGACG 35 27 0 GTGTGCCGCG 0.903125 -92 ACCGTGCCTGGGCCCCGGCCACGACCGTGG 35 63 0 GGCCCCGGCC 0.880738 -56 ACACACACTAATCTGCGCCGCGGTTGCCGT 35 97 0 ATCTGCGCCG 0.953038 -22 GTAGGACCAGGCCTGCCGCCAGCCTGATCG 36 76 0 GCCTGCCGCC 0.898216 -139 TGGTCTGCAACGGCCCGCCGGCGGAGTCTG 36 122 0 CGGCCCGCCG 0.890321 -93 TCGGCCAGCCGTCGACCCCGATTCGCGCGG 36 163 0 GTCGACCCCG 0.92927 -52 CGAACGCGTGCTGTCCGGCGGG 36 203 1 CTGTCCGGCG 0.783686 -12 TGAGGCGCAGCGCTAGGCTTTG 37 3 1 AGGCGCAGCG 0.725399 -67 CGTTGCGATAGTCTCCGGCC 38 1 0 GTCTCCGGCC 0.884002 -30 CTATCGCAACGGCAGTGCCGC 38 20 1 GGCAGTGCCG 0.597936 -11 TACCACCCGAGCCCCCGCCGTCTAAGCTTT 40 16 0 GCCCCCGCCG 0.984875 -187 ACCCGCACCGCAGCGCGGCGCGATGGGTAC 40 43 0 CAGCGCGGCG 0.768798 -160 CTTGACGATGACCCGCACCGCAGCGCGGCG 40 53 0 ACCCGCACCG 0.899411 -150 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 40 101 0 CGCAGCGGCG 0.600846 -102 CTCGGCGACGATGCACGCCGCGCAGCGGCG 40 111 0 ATGCACGCCG 0.842435 -92 TCCAACACAGCTCGGCGACGATGCACGCCG 40 121 0 CTCGGCGACG 0.940402 -82 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 40 159 0 CGCAGCGGCG 0.600846 -44 CTCGGCGACGATGCACGCCGCGCAGCGGCG 40 169 0 ATGCACGCCG 0.842435 -34 CATAACCTAGCTCGGCGACGATGCACGCCG 40 179 0 CTCGGCGACG 0.940402 -24 GATGGTCCACCGCAGCGGCGGGTCCGACGC 41 13 0 CGCAGCGGCG 0.600846 -37 GCGTTGAAACGACGCCAGCGCGAGGAGCGC 42 79 1 GACGCCAGCG 0.540826 -172 TTGGAGGAGGCTCGGCCGCCAGAGCTTGCG 42 143 0 CTCGGCCGCC 0.837776 -108 AACTGTGGATAACAGCGCCCGTCAATGCGT 44 58 0 AACAGCGCCC 0.711947 -243 CCACAGCTTTATCCACAGCGGTAAGAATCC 44 132 0 ATCCACAGCG 0.656723 -169 GTCGTGCTGGACGTGCCGCGACCGGGCGCG 44 189 1 ACGTGCCGCG 0.706842 -112 TGCCGCGACCGGGCGCGCCCAATCCAGCGC 44 202 1 GGGCGCGCCC 0.499707 -99 CGTTGAGGCAGGCTTCCGCGCTGGATTGGG 44 219 0 GGCTTCCGCG 0.570552 -82 GTACGGCATTGTCCGCGCCGTCAACAGGCG 44 247 0 GTCCGCGCCG 0.976695 -54 CTAGTGACTTCTCCGCCCCGCACCGGTACG 44 272 0 CTCCGCCCCG 0.956448 -29 ********** Masking position 9 Map Score: 233.124 Number of sites scoring better than the average of aligned sites = 106382 Number in coding regions = 100150 Number in noncoding regions = 6232 Number of orfs with sites within 600 bp upstream = 1613 Fraction of orfs with sites within 600 bp upstream = 0.259075 Motif number 3 GTCGGATAGCGCTGGCCAACTCTGGG 1 7 0 GCTGGCCAAC 0.570214 -95 AGACCTGGGCCATGGTTGCGCTGCTGATCG 1 36 0 CATGGTTGCG 0.768943 -66 TTTCGGATCTCCTCGCCGCACAGCGGCGGT 1 80 0 CCTCGCCGCA 0.835225 -22 TAACCGCGATCCTAGTCACCCGGTTGAACC 4 69 0 CCTAGTCACC 0.772839 -26 CTGCGCTCGGCATCGTCGCCGGCGGTCATG 5 58 0 CATCGTCGCC 0.980033 -41 CGCTCCTCCTCATCGCTGCGCTCGGCATCG 5 73 0 CATCGCTGCG 0.939961 -26 TGGTCGATAGCCTAGCGGGCCGTAG 6 6 1 GATAGCCTAG 0.164592 -30 CGATTCCCGTCATCGGCTCCGATGTGACAC 7 33 1 CATCGGCTCC 0.928604 -268 GCCTTCCCCGCCTTGCCGCCGGGCCACCGA 7 89 0 CCTTGCCGCC 0.944277 -212 GCCCATGCACCGTCGTCGCCGACCGCGCCG 7 134 1 CGTCGTCGCC 0.849349 -167 GTCAGTATCACATAGCCTCGGCCGCCGGGG 7 254 0 CATAGCCTCG 0.8091 -47 CTCAAGTTGTCCTCGCTGCCACTCGCTGCG 9 110 1 CCTCGCTGCC 0.968067 -184 TTGCACTCGGCATAGGCGAGTGCTAAGAAT 9 199 0 CATAGGCGAG 0.419366 -95 AGCCCCTCCAGATCGCCGCGA 11 2 0 GATCGCCGCG 0.977772 -76 GGCTGGATGTCCTGGCTACCCTGGTCGCTG 11 32 1 CCTGGCTACC 0.830409 -46 GTTGGTGCCCCAACGTCGCCTACGGTCGGT 12 59 0 CAACGTCGCC 0.843848 -223 GGGCGCCGGGCATGGCCACGCCCGCGCGTT 12 86 0 CATGGCCACG 0.932379 -196 GGTATCCGGGCATGGGCGCCGGGCATGGCC 12 99 0 CATGGGCGCC 0.971493 -183 GCCTCGGCCGGAACGCCGACTGGCTGAGTG 13 33 0 GAACGCCGAC 0.415551 -66 ACGAGTGGTCCCTAGCCTCGGCCGGAACGC 13 47 0 CCTAGCCTCG 0.843018 -52 GCACCAGGGGCCACGTCGCGTCGCGGACAG 14 114 1 CCACGTCGCG 0.817558 -88 TAGCAGACTGGCTTGCCTCCTGCCGCGACC 14 164 1 GCTTGCCTCC 0.653205 -38 CAAGCTATCGGATGGTCGCGGCAGGAGGCA 14 177 0 GATGGTCGCG 0.903418 -25 CAGGTTCTCGGCACGCCACGACGGGCGGCC 15 112 1 GCACGCCACG 0.623305 -39 CTCTGTGATCGGTGGCCGCCCGTCGTGGCG 15 125 0 GGTGGCCGCC 0.603889 -26 TTTGGAAACGGCCCGGTGCGGCGGGGCTCA 18 71 0 GCCCGGTGCG 0.669487 -230 CCCCACCGATCCCAGCCGCCGCGTCCCTAC 18 144 0 CCCAGCCGCC 0.948072 -157 CGTGGCGGCCCATGGCCGCAAGGAGGCTCC 19 150 0 CATGGCCGCA 0.706538 -27 TGGGGGCACCCCTAGCCGCGAGCGTAACGC 20 73 0 CCTAGCCGCG 0.958623 -124 TTTCGGCGCGCATCGTCGCCAGGCTAGATC 20 113 1 CATCGTCGCC 0.980033 -84 AGATCCGATTGCCCGGCTCCTCAGCCCGCC 20 138 1 GCCCGGCTCC 0.805069 -59 TTTCGGCGCGCATCGTCGCCAGGCTAAGGT 20 169 1 CATCGTCGCC 0.980033 -28 CGCTGCCCGTCCCCGGCGCGACCTATGGAG 21 47 0 CCCCGGCGCG 0.9605 -254 ACTCAATTTGCATGGCCGACAACAGTTTGG 22 13 0 CATGGCCGAC 0.889228 -61 CGCTACCGTCGCCGGCCGCCGCAGTCACAC 22 41 0 GCCGGCCGCC 0.957689 -33 CGCAGATCCTGCGCGCCGCGATGGATATCG 24 37 1 GCGCGCCGCG 0.776634 -231 CGGGGCTGTCCATCGGCGAGCTTGCCGGGC 24 85 1 CATCGGCGAG 0.780618 -183 CTTGCTCATGCCCAGCCGCCCGGCAAGCTC 24 102 0 CCCAGCCGCC 0.948072 -166 TGCAGCTGCTCCTTGGCGCCGAAATGCCGG 24 143 0 CCTTGGCGCC 0.873495 -125 CGGCGGCCTCGACGGTCGCCAGCTGCAGCT 24 166 0 GACGGTCGCC 0.880979 -102 CCCGCGATGGCAGCGCCGCCCGGGGTGGAC 24 225 1 CAGCGCCGCC 0.896535 -43 ACCCATCCGCGATGGCTGCGACTACCTGCG 25 22 0 GATGGCTGCG 0.819169 -64 CCTACCCCGCCCTTGCCGACAAAGAGACTG 26 42 0 CCTTGCCGAC 0.619379 -78 CGCTCCTCCTCATCGCTTCGCTCTGCATCG 28 23 1 CATCGCTTCG 0.782425 -278 CTTCGCTCTGCATCGTCACCGGCGCGACTC 28 38 1 CATCGTCACC 0.929713 -263 CGCTCCTGCTCATCGCTTCGCTCTGCATCG 28 76 1 CATCGCTTCG 0.782425 -225 CTTCGCTCTGCATCGTCACCGGCGCGACTC 28 91 1 CATCGTCACC 0.929713 -210 CGCTCCTGCTCATCGCTTCGCTCTGCATCG 28 129 1 CATCGCTTCG 0.782425 -172 CTTCGCTCTGCATCGTCACCGGCGCGACTC 28 144 1 CATCGTCACC 0.929713 -157 CGCTCCTGCTCATCGCTTCGCTCTGCATCG 28 182 1 CATCGCTTCG 0.782425 -119 CTTCGCTCTGCATCGTCACCGGCGCGACTC 28 197 1 CATCGTCACC 0.929713 -104 CGCTCCTCCTCATCGCTTCGCTCTGCATCG 28 235 1 CATCGCTTCG 0.782425 -66 CTTCGCTCTGCATCGTCACCGGCGCGCATG 28 250 1 CATCGTCACC 0.929713 -51 GCGGTGTTCGCCAGGGTGCCGAAACAGGTC 29 103 1 CCAGGGTGCC 0.450123 -31 TTTCGTCGGTCGTGGCCGCGGCATCGGTGC 30 46 1 CGTGGCCGCG 0.601223 -183 CCAACACAACGCTAGTCGCGATGACGCGGT 30 110 0 GCTAGTCGCG 0.799902 -119 TCAAACCCGCCACCGCCACGCACCACAGTG 30 140 0 CACCGCCACG 0.926924 -89 CGTCGGCGGCGACCGCCGCCAGCGTCGCTG 31 38 1 GACCGCCGCC 0.97207 -263 ATGTTGACGACCTGGCTACCCAGCAGGACG 31 112 0 CCTGGCTACC 0.830409 -189 CCGTAAAGCACCCGGTCACCTGCCCGGTAC 31 162 1 CCCGGTCACC 0.839326 -139 CGGTGTGGGCGATCGGTACCGGGCAGGTGA 31 177 0 GATCGGTACC 0.559708 -124 GCCCCGATAGCATGGTCGCGATCGTTTCGA 31 254 1 CATGGTCGCG 0.950812 -47 GGGTCAGGCAGACGGGCTCCCACGAGCTGC 34 41 0 GACGGGCTCC 0.662356 -37 ACTTCGACGGCATTGCCGCCACGGTCGTGG 35 45 1 CATTGCCGCC 0.930426 -74 GTGCCTGGGCCCCGGCCACGACCGTGGCGG 35 60 0 CCCGGCCACG 0.891878 -59 GTGGCCGGGGCCCAGGCACGGTCCCGACGG 35 71 1 CCCAGGCACG 0.570845 -48 GTAGGACCAGGCCTGCCGCCAGCCTGATCG 36 76 0 GCCTGCCGCC 0.809388 -139 GGGGTCGACGGCTGGCCGAGTGCTACCGTC 36 174 1 GCTGGCCGAG 0.763047 -41 CTGCCGTTGCGATAGTCTCCGGCC 38 5 0 GATAGTCTCC 0.525457 -26 AGCGCGGCGCGATGGGTACCACCCGAGCCC 40 32 0 GATGGGTACC 0.43347 -171 CGGTGCGGGTCATCGTCAAGCTGTGCTTGA 40 63 1 CATCGTCAAG 0.453903 -140 GTGCTTGACTGCTCGGCTCCTCCTCACGCC 40 85 1 GCTCGGCTCC 0.888582 -118 GCGCGGCGTGCATCGTCGCCGAGCTGTGTT 40 118 1 CATCGTCGCC 0.980033 -85 GTGTTGGACTGCTCGGCTCCTCCTCACGCC 40 143 1 GCTCGGCTCC 0.888582 -60 GCGCGGCGTGCATCGTCGCCGAGCTAGGTT 40 176 1 CATCGTCGCC 0.980033 -27 CGTTAGGGCAGCTCGCCTCCGAATTGCTTG 42 113 1 GCTCGCCTCC 0.951393 -138 GTTGACATCCGCTGGTCGACTGCCGACTTG 42 175 1 GCTGGTCGAC 0.634955 -76 GGTCCCGGCTGCAAGCCGCCCAAAGTGGCG 43 40 0 GCAAGCCGCC 0.655545 -36 CAGTTGTGGGCCTGGCTGACGGATGGAGCC 44 83 1 CCTGGCTGAC 0.636637 -218 ATGGCGTTAACACCGGCTCCATCCGTCAGC 44 97 0 CACCGGCTCC 0.870725 -204 TCCAGCACGACACAGCTACCTACGACTATC 44 170 0 CACAGCTACC 0.403774 -131 ATTGGGCGCGCCCGGTCGCGGCACGTCCAG 44 195 0 CCCGGTCGCG 0.926914 -106 CTCCGCCCCGCACCGGTACGGCATTGTCCG 44 262 0 CACCGGTACG 0.470977 -39 ********** Masking position 5 Map Score: 114.862 Number of sites scoring better than the average of aligned sites = 49264 Number in coding regions = 46383 Number in noncoding regions = 2881 Number of orfs with sites within 600 bp upstream = 1284 Fraction of orfs with sites within 600 bp upstream = 0.206232 Motif number 4 GCTATCCGACGATCAGCAGCGCAACCATGG 1 27 1 GATCAGCAGC 0.733943 -75 GGATCTCCTCGCCGCACAGCGGCGGTGATC 1 76 0 GCCGCACAGC 0.691244 -26 ACGAGAACCAGAGGGAGCACAGGATGAGCG 3 21 1 GAGGGAGCAC 0.125589 -22 CGCCGGCGACGATGCCGAGCGCAGCGATGA 5 64 1 GATGCCGAGC 0.792577 -35 GCGCAGCGATGAGGAGGAGCGGCGCAT 5 82 1 GAGGAGGAGC 0.965678 -17 TCCCCGCCTTGCCGCCGGGCCACCGACGTT 7 85 0 GCCGCCGGGC 0.51674 -216 GGCCCAAAACGATGGCCGGCCCATGCACCG 7 116 1 GATGGCCGGC 0.635863 -185 CAGTGCCCGCGACGGACGGCTCAAGTTGTC 9 91 1 GACGGACGGC 0.895843 -203 TCGTCGCAGCGAGTGGCAGCGAGGACAACT 9 114 0 GAGTGGCAGC 0.454695 -180 CACTCGCTGCGACGACGGGCCTGGCCTCAC 9 129 1 GACGACGGGC 0.909826 -165 GGCATGACCCGGTGCGGGGCTTCTTGCACT 9 222 0 GGTGCGGGGC 0.634673 -72 GATATCCGTCGACGAACCGCAGGAGCAA 10 9 0 GACGAACCGC 0.898406 -52 GAGTGCGGGTGTCGCGCCGCTGTCTACCGA 12 34 1 GTCGCGCCGC 0.611039 -248 CGGGCAACCTGCCGCCTAGCAGGGTACAAC 12 210 1 GCCGCCTAGC 0.609095 -72 TCCGGCGAGACGGCTCGCCGGGAATGTC 15 9 1 GACGGCTCGC 0.801195 -142 GGCACGCCACGACGGGCGGCCACCGATCAC 15 121 1 GACGGGCGGC 0.748402 -30 AGCGGTACAGGACGGGCGTCGGTTCGCGTT 16 40 1 GACGGGCGTC 0.533022 -50 ACGGCCCGGTGCGGCGGGGCTCATGTTCCC 18 64 0 GCGGCGGGGC 0.526099 -237 CCGCGGTAGGGACGCGGCGGCTGGGATCGG 18 139 1 GACGCGGCGG 0.537672 -162 CGAATCTCGCGAGGAGCCTCCTTGCGGCCA 19 138 1 GAGGAGCCTC 0.586467 -39 CGAGACCCGTGGCGGCCCATGGC 19 164 0 GACCCGTGGC 0.624041 -13 CGGCGCTTACGCTGGGCAGC 20 1 0 GCTGGGCAGC 0.529672 -196 CTAGCCTGGCGACGATGCGCGCCGAAACGG 20 110 0 GACGATGCGC 0.61528 -87 GAAACGGCGGGCTGAGGAGCCGGGCAATCG 20 143 0 GCTGAGGAGC 0.867334 -54 TTAGCCTGGCGACGATGCGCGCCGAAACGG 20 166 0 GACGATGCGC 0.61528 -31 TCGCGCCGGGGACGGGCAGCGGGTCGTGTG 21 56 1 GACGGGCAGC 0.832029 -245 TGAAAGCACCGCTGAACAGCAGAAAAGCGC 21 135 1 GCTGAACAGC 0.700139 -166 CCTACCGACAGGGCGCGCACAC 23 7 0 GACAGGGCGC 0.490242 -16 CCATCGCGGCGCGCAGGATCTGCGCCCGGG 24 31 0 GCGCAGGATC 0.165853 -237 TGCGCGCCGCGATGGATATCGCCTCGGTGA 24 46 1 GATGGATATC 0.0927222 -222 CAAGCTCGCCGATGGACAGCCCCGAGAGCC 24 79 0 GATGGACAGC 0.857173 -189 CGGCGAGCTTGCCGGGCGGCTGGGCATGAG 24 98 1 GCCGGGCGGC 0.521367 -170 TTTCGGCGCCAAGGAGCAGCTGCAGCTGGC 24 149 1 AAGGAGCAGC 0.207313 -119 TCCACCCCGGGCGGCGCTGCCATCGCGGGA 24 224 0 GCGGCGCTGC 0.377108 -44 GCATGCATGAGGGCGCGCACCCGGTCCA 24 250 0 GAGGGCGCGC 0.877938 -18 GTGTGGGCGAGAGGGAGGGCC 25 75 1 GAGGGAGGGC 0.898581 -11 TGATGCCGGGGCCGGCCAGCGAGTG 26 105 1 GCCGGCCAGC 0.524771 -15 CCCCGACAGGGCGGACGGGCGCAGCTGCAC 27 21 1 GCGGACGGGC 0.707914 -100 GCCCGAACTCGACCCCGCGCAGGTGCAGCT 27 43 0 GACCCCGCGC 0.664396 -78 GGGCCTAGCGGACTCGGAGCAGCCCGAACT 27 64 0 GACTCGGAGC 0.615211 -57 GCGAAGCGATGAGGAGGAGCGGCGCAGATG 28 14 0 GAGGAGGAGC 0.965678 -287 CGCCGGTGACGATGCAGAGCGAAGCGATGA 28 32 0 GATGCAGAGC 0.887985 -269 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 28 51 0 GATGAGTCGC 0.822754 -250 GCGAAGCGATGAGCAGGAGCGGCGCAGATG 28 67 0 GAGCAGGAGC 0.849741 -234 CGCCGGTGACGATGCAGAGCGAAGCGATGA 28 85 0 GATGCAGAGC 0.887985 -216 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 28 104 0 GATGAGTCGC 0.822754 -197 GCGAAGCGATGAGCAGGAGCGGCGCAGATG 28 120 0 GAGCAGGAGC 0.849741 -181 CGCCGGTGACGATGCAGAGCGAAGCGATGA 28 138 0 GATGCAGAGC 0.887985 -163 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 28 157 0 GATGAGTCGC 0.822754 -144 GCGAAGCGATGAGCAGGAGCGGCGCAGATG 28 173 0 GAGCAGGAGC 0.849741 -128 CGCCGGTGACGATGCAGAGCGAAGCGATGA 28 191 0 GATGCAGAGC 0.887985 -110 GAGCGGCGCAGATGAGTCGCGCCGGTGACG 28 210 0 GATGAGTCGC 0.822754 -91 GCGAAGCGATGAGGAGGAGCGGCGCAGATG 28 226 0 GAGGAGGAGC 0.965678 -75 CGCCGGTGACGATGCAGAGCGAAGCGATGA 28 244 0 GATGCAGAGC 0.887985 -57 GAAACCTCGTGTTGGGCAGCCGAGTTGGAA 30 20 0 GTTGGGCAGC 0.513648 -209 GGCCACGACCCCGCGCGGGTTGGGCA 30 213 0 GACCCCGCGC 0.664396 -16 GGTCGCCGCCGACGGGCCGCTACCGTAGCA 31 22 0 GACGGGCCGC 0.798441 -279 AGCGTCGCTGGACGGGGAGCGGTCAGCGAC 31 61 0 GACGGGGAGC 0.950954 -240 TCGACGTCCTGCTGGGTAGCCAGGTCGTCA 31 108 1 GCTGGGTAGC 0.755324 -193 GGATTTTGTTGCTGAGCGGCCG 33 3 0 GCTGAGCGGC 0.609443 -20 CCGCCAGCCTGATCGAGGGCTAAGATGCCT 36 61 0 GATCGAGGGC 0.540845 -154 GCCAGACTCCGCCGGCGGGCCGTTGCAGAC 36 120 1 GCCGGCGGGC 0.593133 -95 CCCGCCGGACAGCACGCGTTCGA 36 202 0 GCCGGACAGC 0.801116 -13 TGAGGCGCAGCGCTAGGCTTT 37 2 1 GAGGCGCAGC 0.649323 -68 AGCTTAGACGGCGGGGGCTCGGGTGGTACC 40 18 1 GCGGGGGCTC 0.443955 -185 ACAGCTTGACGATGACCCGCACCGCAGCGC 40 57 0 GATGACCCGC 0.813001 -146 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCA 40 90 0 GAGGAGGAGC 0.965678 -113 GACGATGCACGCCGCGCAGCGGCGTGAGGA 40 105 0 GCCGCGCAGC 0.511146 -98 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCC 40 148 0 GAGGAGGAGC 0.965678 -55 GACGATGCACGCCGCGCAGCGGCGTGAGGA 40 163 0 GCCGCGCAGC 0.511146 -40 CGGCGTCGGACCCGCCGCTGCGGTGGAC 41 9 1 GACCCGCCGC 0.58489 -41 CAGATGCATATCGAGTTAGCAT 42 3 1 GATGCATATC 0.0893255 -248 TCAACGTTTGGAGGAGGCTCGGCCGCCAGA 42 150 0 GAGGAGGCTC 0.685058 -101 GTAAGAATCCGACGAATGGCGTTAACACCG 44 112 0 GACGAATGGC 0.619632 -189 TGTCGTGCTGGACGTGCCGCGACCGGGCGC 44 188 1 GACGTGCCGC 0.549217 -113 GACGTGCCGCGACCGGGCGCGCCCAATCCA 44 198 1 GACCGGGCGC 0.873476 -103 ATGCCGTACCGGTGCGGGGCGGAGAAGTCA 44 268 1 GGTGCGGGGC 0.634673 -33 ********** Masking position 1 Map Score: 100.897 Number of sites scoring better than the average of aligned sites = 24839 Number in coding regions = 22897 Number in noncoding regions = 1942 Number of orfs with sites within 600 bp upstream = 979 Fraction of orfs with sites within 600 bp upstream = 0.157244 Motif number 5 CCCAGGTCTGGACGTACGCGATCACCGCCG 1 57 1 GACGTACGCG 0.393857 -45 CCCTACCCAAGCCGAACGCGAAACGAGAAC 5 22 0 GCCGAACGCG 0.974219 -77 CGGCGACGATGCCGAGCGCAGCGATGAGGA 5 67 1 GCCGAGCGCA 0.992012 -32 CACCGTCGTCGCCGACCGCGCCGTATGGGA 7 141 1 GCCGACCGCG 0.985567 -160 AGGAACCGTCGCCGACAGAGCGGTGCTGCC 7 210 1 GCCGACAGAG 0.702143 -91 CGATCCTAGTGCCGTGCACCCAACCTGCGG 8 17 1 GCCGTGCACC 0.557268 -44 ACTTACGCTGGCCGGGCGCAGTGCCCGCGA 9 73 1 GCCGGGCGCA 0.967688 -221 GACAACTTGAGCCGTCCGTCGCGGGCACTG 9 91 0 GCCGTCCGTC 0.815971 -203 GCCTCACCGTCCCGACCTAGCACTCACCGG 9 152 1 CCCGACCTAG 0.306236 -142 ACTCGCCTATGCCGAGTGCAAGAAGCCCCG 9 208 1 GCCGAGTGCA 0.91162 -86 CGAGGACACGGTCGAACGAGGGGCATGACC 9 243 0 GTCGAACGAG 0.488649 -51 GCCGCTGTCTACCGACCGTAGGCGACGTTG 12 49 1 ACCGACCGTA 0.31866 -233 CGGCAGGTTGCCCGAGCGGCCAATGGGAGC 12 194 0 CCCGAGCGGC 0.682038 -88 TCGCGAGATAGCCGTGTGTGCTCTGTCTAC 12 246 0 GCCGTGTGTG 0.724368 -36 ACCTTCTTCCCGCGAGCGCGGACCCTAACG 16 66 0 CGCGAGCGCG 0.701326 -24 CCGCCGAACGTGCACGCACTGC 17 3 1 GCCGAACGTG 0.899597 -81 CCGAATCTTCGCAGTGCGTGCACGTTCGGC 17 13 0 GCAGTGCGTG 0.792477 -71 CTGAACACTCGCCGAACGTGCAACAGCTGC 17 53 0 GCCGAACGTG 0.899597 -31 ACTCTTACCGGCCGAAGGCGGCGGGTGTCA 18 211 1 GCCGAAGGCG 0.53617 -90 ACAACCACTGGCCGTCAGCCTAGATCAGTG 18 239 0 GCCGTCAGCC 0.619624 -62 TTAACCTGCGCCCGTCCGAAGCGCCCGGCT 19 91 0 CCCGTCCGAA 0.726852 -86 GCTGCCCAGCGTAAGCGCCGAGC 20 4 1 GCCCAGCGTA 0.414794 -193 CAGCGTAAGCGCCGAGCGTAACGCCACTGC 20 17 1 GCCGAGCGTA 0.966995 -180 GGCACCCCTAGCCGCGAGCGTAACGCCACT 20 69 0 GCCGCGAGCG 0.791091 -128 CGGGCAGCGGGTCGTGTGCGCGTCTTTCAG 21 68 1 GTCGTGTGCG 0.405246 -233 CTTTCAGTGCACCGTGCGAAACGCCGACAC 21 91 1 ACCGTGCGAA 0.615422 -210 CGCTACCGTCGCCGGCCGCCGCAGTCACAC 22 41 0 GCCGGCCGCC 0.88714 -33 GGCCGCCAAACCCGGGCGCAGATCCTGCGC 24 21 1 CCCGGGCGCA 0.912119 -247 GATGGACAGCCCCGAGAGCCCCTTCACCGA 24 69 0 CCCGAGAGCC 0.790296 -199 CGTCGAGGCCGCCGTGAGCGTGTTCGAAGC 24 182 1 GCCGTGAGCG 0.91763 -86 TGCAGCTGCGCCCGTCCGCCCTGTCGGGGG 27 20 0 CCCGTCCGCC 0.861141 -101 CTCGGAGCAGCCCGAACTCGACCCCGCGCA 27 52 0 CCCGAACTCG 0.371852 -69 CGGTGACGATGCAGAGCGAAGCGATGAGGA 28 29 0 GCAGAGCGAA 0.861042 -272 CGGTGACGATGCAGAGCGAAGCGATGAGCA 28 82 0 GCAGAGCGAA 0.861042 -219 CGGTGACGATGCAGAGCGAAGCGATGAGCA 28 135 0 GCAGAGCGAA 0.861042 -166 CGGTGACGATGCAGAGCGAAGCGATGAGCA 28 188 0 GCAGAGCGAA 0.861042 -113 CGGTGACGATGCAGAGCGAAGCGATGAGGA 28 241 0 GCAGAGCGAA 0.861042 -60 ATGACATTGTGCCGTGCGCCACGTTGTCAG 29 49 1 GCCGTGCGCC 0.981191 -85 ACGACCGTAAGCCGAGTGACCGGATGGGTT 31 216 0 GCCGAGTGAC 0.818043 -85 TACGGTCGTCGACGTGCGCCCCGATAGCAT 31 237 1 GACGTGCGCC 0.683152 -64 GTCGTGCCGGCCCGTGCGAGGC 34 3 0 CCCGTGCGAG 0.943676 -75 ACGCTTTCCGCCCGCGCGAATCGGGGTCGA 36 152 1 CCCGCGCGAA 0.765181 -63 TCGACGGCTGGCCGAGTGCTACCGTCGAAC 36 178 1 GCCGAGTGCT 0.438394 -37 GAGTGCTACCGTCGAACGCGTGCTGTCCGG 36 191 1 GTCGAACGCG 0.698443 -24 GTGCATCGTCGCCGAGCTAGGTTATGGGCT 40 183 1 GCCGAGCTAG 0.821489 -20 GAGGTCGATCGTAGTGCGCATACATCAGAT 42 31 0 GTAGTGCGCA 0.331533 -220 TGAAACGACGCCAGCGCGAGGAGCGCAAAA 42 83 1 CCAGCGCGAG 0.439839 -168 AGCTCTGGCGGCCGAGCCTCCTCCAAACGT 42 147 1 GCCGAGCCTC 0.448661 -104 CTGGCAGGTACCCGAGCGAAATGGATTGTC 44 15 0 CCCGAGCGAA 0.946749 -286 ACGTGCCGCGACCGGGCGCGCCCAATCCAG 44 199 1 ACCGGGCGCG 0.775289 -102 ********** Masking position 4 Map Score: 42.4643 Number of sites scoring better than the average of aligned sites = 18005 Number in coding regions = 16603 Number in noncoding regions = 1402 Number of orfs with sites within 600 bp upstream = 836 Fraction of orfs with sites within 600 bp upstream = 0.134276 Motif number 6 CCCAGAGTTGGCCAGCGCTATCCGACGA 1 9 1 TGGCCAGCGC 0.810361 -93 TGGACGTACGCGATCACCGCCGCTGTGCGG 1 65 1 CGATCACCGC 0.856445 -37 AGGGAGCACAGGATGAGCGCC 3 32 1 GGATGAGCGC 0.879082 -11 AAGGTCAGTCGGATGCGCTCG 4 2 0 GGATGCGCTC 0.206529 -93 TCGTCGCCGGCGGTCATGGCGTCACCCTAC 5 46 0 CGGTCATGGC 0.315447 -53 CCTTGCCGCCGGGCCACCGACGTTCAGCAT 7 79 0 GGGCCACCGA 0.533616 -222 CCATACGGCGCGGTCGGCGACGACGGTGCA 7 139 0 CGGTCGGCGA 0.621684 -162 GATACTGACCTGATGAGCGACGGTGGCGCA 7 275 1 TGATGAGCGA 0.242554 -26 GGGGGTCACCGGGTGACGGCAACCCCGCTA 9 44 1 GGGTGACGGC 0.796654 -250 GCACTGCGCCCGGCCAGCGTAAGTAGCGGG 9 67 0 CGGCCAGCGT 0.671243 -227 GCCGGGCGCAGTGCCCGCGACGGACGGCTC 9 83 1 GTGCCCGCGA 0.49461 -211 CACTCGCGACCGGTGAGTGCTAGGTCGGGA 9 161 0 CGGTGAGTGC 0.608488 -133 GGGCATGACCCGGTGCGGGGCTTCTTGCAC 9 223 0 CGGTGCGGGG 0.721996 -71 CTCGGCCCTCCGATCCGGGTGAGTATGTTC 9 269 1 CGATCCGGGT 0.534601 -25 TTGAAATCCTGGATCAGCGACCAGGGTAGC 11 46 0 GGATCAGCGA 0.606173 -32 GGTCAAGCTGGTATCCGGGCATGGGCGCCG 12 108 0 GTATCCGGGC 0.551346 -174 CCTGGTGCATCGGTCAGGACGGTGTAGCGG 14 92 0 CGGTCAGGAC 0.252501 -110 TAACATGGGACTGTCCGCGACGCGACGTGG 14 124 0 CTGTCCGCGA 0.746617 -78 CCACGACGGGCGGCCACCGATCACAGAGGG 15 127 1 CGGCCACCGA 0.682596 -24 CTGGCTTACCGACGCCCGAACTGTGCACC 16 10 1 CGACGCCCGA 0.585016 -80 GTTCGCGTTAGGGTCCGCGCTCGCGGGAAG 16 61 1 GGGTCCGCGC 0.985823 -29 GGGATCGGTGGGGTGAGCGCCCGGCTTCTC 18 161 1 GGGTGAGCGC 0.95913 -140 TCGCGGCTAGGGGTGCCCCCACAGCCCGCC 20 82 1 GGGTGCCCCC 0.453849 -115 AGCCTGGCGACGATGCGCGCCGAAACGGCG 20 108 0 CGATGCGCGC 0.971622 -89 GGCGGGCTGAGGAGCCGGGCAATCGGATCT 20 138 0 GGAGCCGGGC 0.451846 -59 AGCCTGGCGACGATGCGCGCCGAAACGGCG 20 164 0 CGATGCGCGC 0.971622 -33 CGCCAGGCTAAGGTCACGGCTC 20 185 1 AGGTCACGGC 0.169937 -12 GCAGCGGGTCGTGTGCGCGTCTTTCAGTGC 21 71 1 GTGTGCGCGT 0.316761 -230 TGGAGTTCAACGGTGTCGGCGTTTCGCACG 21 103 0 CGGTGTCGGC 0.726056 -198 CTACCGTCGCCGGCCGCCGCAGTCACACTC 22 39 0 CGGCCGCCGC 0.679042 -35 GTGTGCGCGCCCTGTCGGTA 23 1 1 GTGTGCGCGC 0.880931 -22 GCGGCGCGCAGGATCTGCGCCCGGGTTTGG 24 26 0 GGATCTGCGC 0.755969 -242 GGGGTGGACCGGGTGCGCGCCCTCATGCAT 24 246 1 GGGTGCGCGC 0.983019 -22 GCCGCTGCCCGCGCAGGTAGTCGC 25 5 1 CTGCCCGCGC 0.911396 -81 ACACCGGATGGTGTCTGCGCCAACTGTACC 25 49 0 GTGTCTGCGC 0.557373 -37 AGACACCATCCGGTGTGGGCGAGAGGGAGG 25 63 1 CGGTGTGGGC 0.877854 -23 ACAAAGAGACTGATCCGGGCCTGAGCCGGC 26 24 0 TGATCCGGGC 0.706238 -96 AAGTCCACTCTGGCGTCCGCCACCGCGGTA 26 73 1 TGGCGTCCGC 0.323908 -47 ATGCCGGGGCCGGCCAGCGAGTG 26 107 1 CGGCCAGCGA 0.853621 -13 CGTGGTCTGCCCCCGACAGGGCGGAC 27 7 1 CTGCCCCCGA 0.404201 -114 CCGGCGCGCATGGTCAGCGACGCTACACCG 28 268 1 TGGTCAGCGA 0.550361 -33 TGGTGAAAGCCGATGCGGGCCATGATCCAC 30 81 0 CGATGCGGGC 0.939381 -148 CGCACAAACTCTGTCACCGCCGATCAGACC 30 177 0 CTGTCACCGC 0.708039 -52 GGCCCGTCGGCGGCGACCGCCGCCAGCGTC 31 34 1 CGGCGACCGC 0.910375 -267 GGACGGGGAGCGGTCAGCGACGCTGGCGGC 31 52 0 CGGTCAGCGA 0.903294 -249 TTTCGATCACCGGTGTGGGCGATCGGTACC 31 187 0 CGGTGTGGGC 0.877854 -114 TTACGGTCGTCGACGTGCGCCCCGATAGCA 31 236 1 CGACGTGCGC 0.754336 -65 TCGGTCGTGCCGGCCCGTGCGAGGC 34 6 0 CGGCCCGTGC 0.742154 -72 CTGCCAGCGTCGATCCACGCGGCACACTTC 35 20 1 CGATCCACGC 0.666272 -99 GACCGTGCCTGGGCCCCGGCCACGACCGTG 35 64 0 GGGCCCCGGC 0.87887 -55 GGTTTTGGCCCGGTCCGGGCTGGATGTTTG 36 21 0 CGGTCCGGGC 0.983398 -194 CCGTCGACCCCGATTCGCGCGGGCGGAAAG 36 155 0 CGATTCGCGC 0.502747 -60 CGCCGCGCTGCGGTGCGGGTCATCGTCAAG 40 53 1 CGGTGCGGGT 0.758023 -150 AGCTCGGCGACGATGCACGCCGCGCAGCGG 40 113 0 CGATGCACGC 0.627747 -90 AGCTCGGCGACGATGCACGCCGCGCAGCGG 40 171 0 CGATGCACGC 0.627747 -32 GACGCCAGCGCGAGGAGCGCAAAACGTTAG 42 89 1 CGAGGAGCGC 0.535752 -162 TTCAGCCTAGTGGTCCCGGCTGCAAGCCGC 43 51 0 TGGTCCCGGC 0.741097 -25 TGCCGCGACCGGGCGCGCCCAATCCAGCGC 44 202 1 GGGCGCGCCC 0.4154 -99 CGGTACGGCATTGTCCGCGCCGTCAACAGG 44 249 0 TTGTCCGCGC 0.683462 -52 AATGCCGTACCGGTGCGGGGCGGAGAAGTC 44 267 1 CGGTGCGGGG 0.721996 -34 ********** Masking position 9 Map Score: 60.6907 Number of sites scoring better than the average of aligned sites = 35924 Number in coding regions = 33503 Number in noncoding regions = 2421 Number of orfs with sites within 600 bp upstream = 1150 Fraction of orfs with sites within 600 bp upstream = 0.184709 Motif number 7 CGCAACCATGGCCCAGGTCTGGACGTACGCGA 1 46 1 GCCAGGTCGG 0.819021 -56 CGCGATCACCGCCGCTGTGCGGCGAGGAGATC 1 73 1 GCCCTGTGGG 0.92806 -29 GGCATCGTCGCCGGCGGTCATGGCGTCACCCT 5 48 0 CCGCGGTCTG 0.460606 -51 GATGCCGAGCGCAGCGATGAGGAGGAGCGGCG 5 74 1 GCACGATGGG 0.407778 -25 GTGGCCCGGCGGCAAGGCGGGGAAGGCCCAAA 7 92 1 GGCAGGCGGG 0.728222 -209 GACGGTGCATGGGCCGGCCATCGTTTTGGGCC 7 116 0 GGGCGGCCTC 0.850921 -185 GCTCCCATACGGCGCGGTCGGCGACGACGGTG 7 141 0 GGCCGGTCGC 0.965945 -160 GAGCGGTGCTGCCCCCGGCGTGGACGCCCCCG 7 227 1 GCCCCGGCTG 0.403039 -74 GTATCACATAGCCTCGGCCGCCGGGGGCGTCC 7 248 0 GCCCGGCCCC 0.911471 -53 GACCTGATGAGCGACGGTGGCGCACCTACC 7 281 1 GCGCGGTGCG 0.939221 -20 CACGGCACTAGGATCGGTCCGG 8 1 0 GGACGGTCGG 0.967787 -60 TGATTCCTCCGGATCGGGGATGAAACGGGGGT 9 18 1 GGACGGGGTG 0.793528 -276 GCCAGCGTAAGTAGCGGGGTTGCCGTCACCCG 9 53 0 GTACGGGGTG 0.322399 -241 GCGGGCACTGCGCCCGGCCAGCGTAAGTAGCG 9 69 0 CGCCGGCCGC 0.576169 -225 CGCAGTGCCCGCGACGGACGGCTCAAGTTGTC 9 89 1 GCGCGGACGC 0.599839 -205 GTGCTAGGTCGGGACGGTGAGGCCAGGCCCGT 9 143 0 GGGCGGTGGG 0.976729 -151 CGAGGGGCATGACCCGGTGCGGGGCTTCTTGC 9 225 0 GACCGGTGGG 0.744698 -69 ATACTCACCCGGATCGGAGGGCCGAGGACACG 9 263 0 GGACGGAGGC 0.33365 -31 TCGCGGCGATCTGGAGGGGCTGGC 11 3 1 GCGCGATCGG 0.617558 -75 GCGATCTGGAGGGGCTGGCTGGATGTCCTGGC 11 16 1 GGGCTGGCGG 0.873668 -62 CGGGTGTCGCGCCGCTGTCTACCGACCGTAGG 12 39 1 GCCCTGTCAC 0.451126 -243 CCGACCGTAGGCGACGTTGGGGCACCAACGCG 12 60 1 GCGCGTTGGG 0.33034 -222 GGGGCACCAACGCGCGGGCGTGGCCATGCCCG 12 78 1 CGCCGGGCTG 0.352043 -204 CCGGGCATGGGCGCCGGGCATGGCCACGCCCG 12 92 0 GCGCGGGCTG 0.920036 -190 TTCGAATCCTGCACCTGCCACCACGGTCAAGC 12 130 0 GCACTGCCCC 0.471399 -152 GTGGTCCCTAGCCTCGGCCGGAACGCCGACTG 13 41 0 GCCCGGCCGA 0.51313 -58 TCAGGACGGTGTAGCGGCCTTGCGGATACGGT 14 77 0 GTACGGCCTG 0.479592 -125 GGCCCCTGGTGCATCGGTCAGGACGGTGTAGC 14 94 0 GCACGGTCGG 0.974584 -108 CAGCTAACATGGGACTGTCCGCGACGCGACGT 14 126 0 GGGCTGTCGC 0.817451 -76 ACGGCTCGCCGGGAATGTCCGCACGCATCTCG 15 20 1 GGGATGTCGC 0.190618 -131 CACAGTTCGGGCGTCGGTAAGCCAG 16 4 0 GCGCGGTAGC 0.702349 -86 TACAGGACGGGCGTCGGTTCGCGTTAGGGTCC 16 45 1 GCGCGGTTGC 0.328787 -45 ATTTGGAAACGGCCCGGTGCGGCGGGGCTCAT 18 70 0 GGCCGGTGGG 0.981138 -231 GCGGCGGCTGGGATCGGTGGGGTGAGCGCCCG 18 152 1 GGACGGTGGG 0.958653 -149 AGCGAGGGGAGCCCCGGGACTCTTACCGGCCG 18 193 1 GCCCGGGATC 0.326427 -108 CGGGCTTCACGGCGCTGTCTGGCCCCAACCGC 19 42 1 GGCCTGTCGG 0.929106 -135 ACCCGTGGCGGCCCATGGCCGCAAGGAGGCTC 19 151 0 GCCATGGCGC 0.191942 -26 TTACGCTCGCGGCTAGGGGTGCCCCCACAGCC 20 76 1 GGCAGGGGGC 0.431487 -121 GGTCGCGCCGGGGACGGGCAGCGGGTCGTGTG 21 54 1 GGGCGGGCGC 0.937845 -247 TTTGAGGGTAGTGACGGTGTCGGTGGGTTGTG 21 206 0 GTGCGGTGCG 0.599826 -95 CCGATATCACGGCCCTGTGCTGGGCTAAGCCA 21 259 1 GGCCTGTGTG 0.719082 -42 GGCTAAGCCAGCGTCTGCAAGGAGAACCGC 21 281 1 GCGCTGCAGG 0.514617 -20 GAGTGTGACTGCGGCGGCCGGCGACGGTAGCG 22 39 1 GCGCGGCCGC 0.966396 -35 GATATCCATCGCGGCGCGCAGGATCTGCGCCC 24 34 0 GCGCGCGCGG 0.382786 -234 GATGGATATCGCCTCGGTGAAGGGGCTCTCGG 24 56 1 GCCCGGTGAG 0.885113 -212 AGGAGCAGCTGCAGCTGGCGACCGTCGAGGCC 24 160 1 GCACTGGCAC 0.193001 -108 CGTGTTCGAAGCCGAGGTCGTGGCTCCCGCGA 24 200 1 GCCAGGTCTG 0.533876 -68 CACCCCGGGCGGCGCTGCCATCGCGGGAGCCA 24 220 0 GGCCTGCCTC 0.579056 -48 GCCGCTGCCCGCGCAGGTAGTC 25 1 1 GCCCTGCCGC 0.873981 -85 TCTCTTTGTCGGCAAGGGCGGGGTAGGAAAGT 26 45 1 GGCAGGGCGG 0.699041 -75 TGTGATGCCGGGGCCGGCCAGCGAGTG 26 103 1 GGGCGGCCGC 0.957546 -17 AGGTGCAGCTGCGCCCGTCCGCCCTGTCGGGG 27 21 0 GCGCCGTCGC 0.562986 -100 GGGCGCAGCTGCACCTGCGCGGGGTCGAGTTC 27 37 1 GCACTGCGGG 0.84922 -84 GCGATGAGGAGGAGCGGCGCAGATGAGT 28 7 0 GGACGGCGAG 0.724776 -294 CAGATGAGTCGCGCCGGTGACGATGCAGAGCG 28 41 0 GCGCGGTGCG 0.939221 -260 GCGATGAGCAGGAGCGGCGCAGATGAGTCGCG 28 60 0 GGACGGCGAG 0.724776 -241 CAGATGAGTCGCGCCGGTGACGATGCAGAGCG 28 94 0 GCGCGGTGCG 0.939221 -207 GCGATGAGCAGGAGCGGCGCAGATGAGTCGCG 28 113 0 GGACGGCGAG 0.724776 -188 CAGATGAGTCGCGCCGGTGACGATGCAGAGCG 28 147 0 GCGCGGTGCG 0.939221 -154 GCGATGAGCAGGAGCGGCGCAGATGAGTCGCG 28 166 0 GGACGGCGAG 0.724776 -135 CAGATGAGTCGCGCCGGTGACGATGCAGAGCG 28 200 0 GCGCGGTGCG 0.939221 -101 GCGATGAGGAGGAGCGGCGCAGATGAGTCGCG 28 219 0 GGACGGCGAG 0.724776 -82 CTGACCATGCGCGCCGGTGACGATGCAGAGCG 28 253 0 GCGCGGTGCG 0.939221 -48 CAGCCGAGTTGGAACGGCCAAGC 30 2 0 GGACGGCCAG 0.773361 -227 ACACGAGGTTTCGTCGGTCGTGGCCGCGGCAT 30 38 1 TCGCGGTCTG 0.22393 -191 CGTGGCCGCGGCATCGGTGCTGCGGGTGGATC 30 56 1 GCACGGTGTG 0.882198 -173 TAGTCGCGATGACGCGGTGGTGAAAGCCGATG 30 96 0 GACCGGTGTG 0.424685 -133 GCGTTGTGTTGGCACTGTGGTGCGTGGCGGTG 30 128 1 GGCCTGTGTG 0.719083 -101 ACTGTGGTGCGTGGCGGTGGCGGGTTTGAAGC 30 141 1 GTGCGGTGCG 0.599824 -88 AGCGACGCTGGCGGCGGTCGCCGCCGACGGGC 31 35 0 GCGCGGTCCC 0.893965 -266 CGCTGGACGGGGAGCGGTCAGCGACGCTGGCG 31 54 0 GGACGGTCGC 0.927142 -247 TCGATAGAGCGTCGCTGGACGGGGAGCGGTCA 31 66 0 GTCCTGGAGG 0.0785846 -235 TGGGCGATCGGTACCGGGCAGGTGACCGGGTG 31 170 0 GTACGGGCGG 0.708987 -131 GGGTTTTCGATCACCGGTGTGGGCGATCGGTA 31 189 0 TCACGGTGGG 0.327103 -112 CGGGTCGGTCTCCAAGGCTTGGA 31 288 0 GGGCGGTCCC 0.869199 -13 GCCTCGCACGGGCCGGCACGACCGAA 34 5 1 CGCCGGGCGG 0.682236 -73 CGCGTGGATCGACGCTGGCAGGATGACTTC 35 9 0 GACCTGGCGG 0.324899 -110 CGGCATTGCCGCCACGGTCGTGGCCGGGGCCC 35 52 1 GCCCGGTCTG 0.956098 -67 CCGGGGCCCAGGCACGGTCCCGACGGCAACCG 35 75 1 GGCCGGTCCG 0.951102 -44 ACTGGGTTTTGGCCCGGTCCGGGCTGGATGTT 36 23 0 GGCCGGTCGG 0.985379 -192 ACGGTTTGTAGGACCAGGCCTGCCGCCAGCCT 36 81 0 GGACAGGCTG 0.0561673 -134 GCGTTGGTCTGCAACGGCCCGCCGGCGGAGTC 36 124 0 GCACGGCCGC 0.940839 -91 GGAGACTATCGCAACGGCAGTGCCGC 38 15 1 GCACGGCATG 0.43262 -16 ATCGCGCCGCGCTGCGGTGCGGGTCATCGTCA 40 49 1 GCTCGGTGGG 0.595689 -154 TCCTCCTCACGCCGCTGCGCGGCGTGCATCGT 40 102 1 GCCCTGCGGG 0.926686 -101 TCCTCCTCACGCCGCTGCGCGGCGTGCATCGT 40 160 1 GCCCTGCGGG 0.926686 -43 CGTCGGACCCGCCGCTGCGGTGGACCATCATG 41 14 1 GCCCTGCGTG 0.761835 -36 GTTTGGAGGAGGCTCGGCCGCCAGAGCTTGCG 42 143 0 GGCCGGCCCC 0.889708 -108 GCCGACTTGCGGCCCCGTGTGGATCTTGACGA 42 196 1 GGCCCGTGGG 0.711655 -55 TTTCGCTCGGGTACCTGCCAGGCTGTCGATGA 44 24 1 GTACTGCCGG 0.414487 -277 TGCTGGACGTGCCGCGACCGGGCGCGCCCAAT 44 193 1 GCCCGACCGG 0.662217 -108 TCTCCGCCCCGCACCGGTACGGCATTGTCCGC 44 261 0 GCACGGTAGG 0.754727 -40 *** ***** ** Masking position 5 Map Score: 138.778 Number of sites scoring better than the average of aligned sites = 39013 Number in coding regions = 36519 Number in noncoding regions = 2494 Number of orfs with sites within 600 bp upstream = 1157 Fraction of orfs with sites within 600 bp upstream = 0.185834 Motif number 8 CTACGCTTCGGGGCCGCCGGTTAGGTCTCGG 2 9 0 GGGGCCGGTA 0.847661 -80 AGAACCAGAGGGAGCACAGGATGAGCGCC 3 24 1 GGAACAGGTG 0.219728 -19 GGATATATAAGGTCAGTCGGATGCGCTCG 4 7 0 GGTGTCGGTG 0.774059 -88 TCTATTGCTGGTTCAACCGGGTGACTAGGATCG 4 60 1 GTTACCGGTG 0.823376 -35 ATAGCCTAGCGGGCCGTAGGGTGTGCCAG 6 17 1 GGGGTAGGTG 0.805816 -19 GCTGAACGTCGGTGGCCCGGCGGCAAGGCGGGG 7 81 1 GGTCCCGGGG 0.404665 -220 CCACTGCGATGCGAAAGCGGCTGGTGCACAGGA 7 181 1 GCGAGCGGTG 0.867047 -120 ACGGAGCTTCGTGCCGCAGGTTGGGTGCACGGC 8 27 0 GTGGCAGGTG 0.947654 -34 GATGAAACGGGGGTCACCGGGTGACGGCAACCC 9 36 1 GGGACCGGTG 0.981035 -258 GTGAGTGCTAGGTCGGGACGGTGAGGCCAGGCC 9 146 0 GGTGGACGTG 0.617261 -148 CAGCTTGACCGTGGTGGCAGGTGCAGGATTCGA 12 128 1 GTGGGCAGTG 0.508351 -154 GTACCCTGCTAGGCGGCAGGTTGCCCGAGCGGC 12 204 0 AGGGCAGGTG 0.570433 -78 CTGGTGCATCGGTCAGGACGGTGTAGCGGCCTT 14 88 0 GGTGGACGTG 0.617261 -114 GCGACGCGACGTGGCCCCTGGTGCATCGGTCAG 14 105 0 GTGCCCTGTG 0.436048 -97 GGTGTTTGGGGTGATAGCGGTTGACCTGGCATA 15 51 1 GTGAGCGGTG 0.930222 -100 CCGCGCTCGCGGGAAGAAGGTTGAC 16 75 1 GGGGAAGGTG 0.805816 -15 CCCTCGCTTTGAGAAGCCGGGCGCTCACCCCAC 18 168 0 GAGGCCGGCG 0.72233 -133 GCCTAGATCAGTGACACCCGCCGCCTTCGGCCG 18 219 0 GTGACCCGCG 0.690697 -82 AGCCCGGTGGGTGTGGCCGGCTGACGGGATGGT 19 15 0 GTGGCCGGTG 0.986991 -162 AGACAGCGCCGTGAAGCCCGGTGGGTGTGGCCG 19 29 0 GTGGCCCGTG 0.965359 -148 CGAGACCCGTGGCGGCCCATGGCCGCAAGGA 19 156 0 GTGGGCCCTG 0.43756 -21 CTGAGGAGCCGGGCAATCGGATCTAGCCTGGCG 20 129 0 GGGATCGGTC 0.219712 -68 CGGTGTCGGCGTTTCGCACGGTGCACTGAAAGA 21 90 0 GTTGCACGTG 0.56706 -211 AACGTGTGTGGCGCCCCACGGTGTTTTCGTGGG 21 164 0 GCGCCACGTG 0.578094 -137 TCTGCGCCCGGGTTTGGCGGCCGACGTCGGCG 24 10 0 GGTGGCGGCG 0.825415 -258 CGCCGCCCGGGGTGGACCGGGTGCGCGCCCTCA 24 238 1 GGTACCGGTG 0.910632 -30 CATCCGGTGTGGGCGAGAGGGAGGGCC 25 69 1 GGGAGAGGAG 0.188111 -17 GTGATTCCGGTACGCCGGCTCAGGCCCGGAT 26 9 1 GGTGCCGGTC 0.628189 -111 ATCACATACCGCGGTGGCGGACGCCAGAGTGGA 26 76 0 GCGGGCGGCG 0.843056 -44 GCCCCCGACAGGGCGGACGGGCGCAGCTGCACC 27 19 1 GGGGACGGCG 0.81711 -102 CCGGTCGTTGCTGAAGCAGGTTGTGGGCCTAGC 27 85 0 CTGGCAGGTG 0.484464 -36 ACATTGTGCCGTGCGCCACGTTGTCAGCGGACT 29 52 1 GTGCCACGTG 0.736907 -82 ATCTCGCGGTGTTCGCCAGGGTGCCGAAACAGG 29 98 1 GTTCCAGGTG 0.60036 -36 CCGCGGCATCGGTGCTGCGGGTGGATCATGGCC 30 61 1 GGTTGCGGTG 0.379205 -168 TGACGCGGTGGTGAAAGCCGATGCGGGCCATGA 30 86 0 GTGAGCCGTG 0.8304 -143 GTGGTGCGTGGCGGTGGCGGGTTTGAAGCAGGA 30 144 1 GCGGGCGGTT 0.284646 -85 GGTACCGGGCAGGTGACCGGGTGCTTTACGGCG 31 160 0 AGGACCGGTG 0.634486 -141 ACCGTAAGCCGAGTGACCGGATGGGTTTTCGAT 31 210 0 GAGACCGGTG 0.759506 -91 GGTCGTCGACGTGCGCCCCGATAGCATGGTCGC 31 240 1 GTGCCCCGTA 0.282608 -61 GTTTTCGGTCGTGCCGGCCCGTGCGAGGC 34 7 0 GTGGGCCCTG 0.437562 -71 TGCAGCTCGTGGGAGCCCGTCTGCCTGACCCGG 34 40 1 GGGCCCGTTG 0.559348 -38 CAGACTCCGCCGGCGGGCCGTTGCAGACCAACG 36 122 1 CGGGGCCGTG 0.639711 -93 GCGCGAATCGGGGTCGACGGCTGGCCGAGTGCT 36 165 1 GGGGACGGTG 0.945626 -50 CTTAGACGGCGGGGGCTCGGGTGGTACCCATCG 40 20 1 GGGCTCGGTG 0.8799 -183 GTTCAGCCTAGTGGTCCCGGCTGCAAGCCGCCC 43 49 0 GTGCCCGGTG 0.969662 -27 GTTGTGGGCCTGGCTGACGGATGGAGCCGGTGT 44 85 1 TGGGACGGTG 0.248674 -216 GCTGGATTGGGCGCGCCCGGTCGCGGCACGTCC 44 197 0 GCGCCCGGCG 0.80068 -104 *** ***** ** Masking position 10 Map Score: 38.7781 Number of sites scoring better than the average of aligned sites = 18939 Number in coding regions = 17827 Number in noncoding regions = 1112 Number of orfs with sites within 600 bp upstream = 746 Fraction of orfs with sites within 600 bp upstream = 0.11982 Motif number 9 TCACCATCAGCGTCGACGTGTCACATCGGAG 7 49 0 CGTCGACTGT 0.869701 -252 GCCGCCGGGCCACCGACGTTCAGCATCACCA 7 74 0 CACCGACTTC 0.248 -227 TCGGCCGGAACGCCGACTGGCTGAGTGTAGG 13 29 0 CGCCGACGGC 0.885968 -70 GATATTGCCTCATCGAGACCGTATCCGCAAG 14 60 1 CATCGAGCCG 0.581586 -142 TCACCCCAAACACCGAGATGCGTGCGGACAT 15 34 0 CACCGAGTGC 0.88043 -117 ATAGCCGTATCGAGTTCCTTTTCGACCA 18 8 1 TATCGAGTCC 0.133672 -293 CGACGATGCGCGCCGAAACGGCGGGCTGTGG 20 100 0 CGCCGAACGG 0.747085 -97 CGACGATGCGCGCCGAAACGGCGGGCTGAGG 20 156 0 CGCCGAACGG 0.747085 -41 CCGTGCGAAACGCCGACACCGTTGAACTCCA 21 102 1 CGCCGACCCG 0.904529 -199 CGCCACAACCCACCGACACCGTCACTACCCT 21 203 1 CACCGACCCG 0.682195 -98 CGCCAAACTGTTGTCGGCCAT 22 1 1 CGCCAAATGT 0.152917 -73 CGCCGACGTCGGCCGCCAAAC 24 1 1 CGCCGACTCG 0.942565 -267 AGATCCTGCGCGCCGCGATGGATATCGCCTC 24 40 1 CGCCGCGTGG 0.713023 -228 TGCTCCTTGGCGCCGAAATGCCGGAACAGGC 24 136 0 CGCCGAATGC 0.88173 -132 AGCTGGCGACCGTCGAGGCCGCCGTGAGCGT 24 172 1 CGTCGAGCCG 0.859868 -96 GGCACAATGTCATCGAGGTGTCGACTCGATC 29 31 0 CATCGAGTGT 0.58548 -103 ACCGCCGCGTTGACCTGTTTCGGCACCC 29 116 0 CGTTGACTGT 0.226946 -18 AGAGTTTGTGCGTCGAGTTGCCCAACCCGCG 30 195 1 CGTCGAGTGC 0.957504 -34 CGGCGGTCGCCGCCGACGGGCCGCTACCGTA 31 25 0 CGCCGACGGC 0.885966 -276 GACTGTCCGTCGTCGACGTCCTGCTGGGTAG 31 96 1 CGTCGACTCC 0.943111 -205 GTAGCCAGGTCGTCAACATCCTTTGGGCTCA 31 123 1 CGTCAACTCC 0.591934 -178 CCTTTGGGCTCATCGAGCCGCCGTAAAGCAC 31 142 1 CATCGAGCGC 0.745279 -159 GGCTTACGGTCGTCGACGTGCGCCCCGATAG 31 233 1 CGTCGACTGC 0.96019 -68 GCGGCAATGCCGTCGAAGTGTGCCGCGTGGA 35 33 0 CGTCGAATGT 0.588489 -86 CTCGGCCAGCCGTCGACCCCGATTCGCGCGG 36 163 0 CGTCGACCCG 0.867874 -52 GTACCCATCGCGCCGCGCTGCGGTGCGGGTC 40 43 1 CGCCGCGTGC 0.782362 -160 TGCGGGTCATCGTCAAGCTGTGCTTGACTGC 40 66 1 CGTCAAGTGT 0.352994 -137 CGTGCATCGTCGCCGAGCTGTGTTGGACTGC 40 124 1 CGCCGAGTGT 0.899954 -79 CGTGCATCGTCGCCGAGCTAGGTTATGGGCT 40 182 1 CGCCGAGTAG 0.484537 -21 AGTATGTCGTCATCGAGGTCGATCGTAGTGC 42 44 0 CATCGAGTCG 0.708003 -207 CTCCTCCAAACGTTGACATCCGCTGGTCGAC 42 164 1 CGTTGACTCC 0.421682 -87 GCTGGTCGACTGCCGACTTGCGGCCCCGTGT 42 185 1 TGCCGACTGC 0.604811 -66 GCGTCCTTGTCGTCAAGATCCACACGGGGCC 42 206 0 CGTCAAGTCC 0.575387 -45 AATGCGTTCTCATCGACAGCCTGGCAGGTAC 44 34 0 CATCGACGCC 0.45608 -267 ******* *** Masking position 6 Map Score: 39.9842 Number of sites scoring better than the average of aligned sites = 20432 Number in coding regions = 19382 Number in noncoding regions = 1050 Number of orfs with sites within 600 bp upstream = 674 Fraction of orfs with sites within 600 bp upstream = 0.108256 Motif number 10 CCGAGACCTAACCGGCGGCCCCGAA 2 5 1 GACCAACCGG 0.583557 -84 GATGACGGGAATCGAACCCGCGTATTCAGCT 7 16 0 ATCGACCCGC 0.4232 -285 ATCGTTTTGGGCCTTCCCCGCCTTGCCGCCG 7 98 0 GCCTCCCCGC 0.88202 -203 AGTGCCGTGCACCCAACCTGCGGCACGAAGC 8 24 1 ACCCACCTGC 0.334888 -37 CGGGCACTGCGCCCGGCCAGCGTAAGTAGCG 9 69 0 GCCCGCCAGC 0.843086 -225 CGAACGAGGGGCATGACCCGGTGCGGGGCTT 9 230 0 GCATACCCGG 0.464331 -64 TCAGCGTATTGCGGCAACCGGACATTTGATA 10 35 0 GCGGAACCGG 0.918123 -26 AGACAGCGGCGCGACACCCGCACTCCAACAA 12 28 0 GCGAACCCGC 0.643834 -254 CCTCATCGAGACCGTATCCGCAAGGCCGCTA 14 67 1 ACCGATCCGC 0.452529 -135 ACGAGTTGGAACCGGACCAGGTTCTCGGCAC 15 95 1 ACCGACCAGG 0.710763 -56 CATGAGCCCCGCCGCACCGGGCCGTTTCCAA 18 69 1 GCCGACCGGG 0.922079 -232 GCGCTGTCTGGCCCCAACCGCAGCGAAGCCT 19 53 1 GCCCAACCGC 0.982424 -124 GGCTAGGGGTGCCCCCACAGCCCGCCGTTTC 20 86 1 GCCCCACAGC 0.808546 -111 GACGATGCGCGCCGAAACGGCGGGCTGTGGG 20 99 0 GCCGAACGGC 0.884145 -98 GACGATGCGCGCCGAAACGGCGGGCTGAGGA 20 155 0 GCCGAACGGC 0.884145 -42 AAAGACGCGCACACGACCCGCTGCCCGTCCC 21 64 0 ACACACCCGC 0.440139 -237 GACGTCGGCCGCCAAACCCGGGCGCAGATCC 24 15 1 GCCAACCCGG 0.895769 -253 GCGCCGAAATGCCGGAACAGGCCCGACTTGC 24 127 0 GCCGAACAGG 0.904328 -141 CGCGATGGCAGCGCCGCCCGGGGTGGACCGG 24 227 1 GCGCGCCCGG 0.857569 -41 CCTCCCTCTCGCCCACACCGGATGGTGTCTG 25 62 0 GCCCCACCGG 0.95976 -24 ACTGATCCGGGCCTGAGCCGGCGTACCGGAA 26 15 0 GCCTAGCCGG 0.556773 -105 CACTCGCTGGCCGGCCCCGGCATCACATAC 26 100 0 GCCGCCCCGG 0.968394 -20 TCGCCAGGGTGCCGAAACAGGTCAACGCGGC 29 110 1 GCCGAACAGG 0.904336 -24 GCGTCGAGTTGCCCAACCCGCGCGGGGTCGT 30 204 1 GCCCACCCGC 0.988363 -25 CGGCCCGTCGGCGGCGACCGCCGCCAGCGTC 31 33 1 GCGGGACCGC 0.602198 -268 GGTACCGATCGCCCACACCGGTGATCGAAAA 31 187 1 GCCCCACCGG 0.95976 -114 GAGCCCGTCTGCCTGACCCGGTAGCCTCTGC 34 52 1 GCCTACCCGG 0.941295 -26 CACGGTCCCGACGGCAACCGCGGCGCAGATT 35 87 1 ACGGAACCGC 0.670942 -32 CAAACATCCAGCCCGGACCGGGCCAAAACCC 36 21 1 GCCCGACCGG 0.952334 -194 CTTGACGATGACCCGCACCGCAGCGCGGCGC 40 52 0 ACCCCACCGC 0.812419 -151 CGGCGTCGGACCCGCCGCTGCGGTG 41 5 1 GTCGACCCGC 0.810764 -45 GTCCAAAATCGCCCAAACAGCGTCCTTGTCG 42 225 0 GCCCAACAGC 0.903193 -26 TGCTGGACGTGCCGCGACCGGGCGCGCCCAA 44 193 1 GCCGGACCGG 0.954973 -108 **** ****** Masking position 8 Map Score: 54.6815 Number of sites scoring better than the average of aligned sites = 13288 Number in coding regions = 12527 Number in noncoding regions = 761 Number of orfs with sites within 600 bp upstream = 546 Fraction of orfs with sites within 600 bp upstream = 0.0876968 Motif number 11 AAGCTACGCAGGTTCGAATCCTGCACCTGC 12 144 0 GGTTCGAATC 0.732244 -138 TCGCGAAGGAGGGACGAACCGA 12 270 1 GGGACGAACC 0.845769 -12 GCCGAGGCTAGGGACCACTCGTAGCCGAAG 13 55 1 GGGACCACTC 0.927786 -44 TATCGGACAAGTGTCCAATCGATGATGAGA 14 34 0 GTGTCCAATC 0.915752 -168 CAGGTAACGCGTGACGAATCTCGCGAGGAG 19 124 1 GTGACGAATC 0.916058 -53 GGTGTCCAACCTACGGTGTAG 28 290 0 GTGTCCAACC 0.884177 -11 TGTCATCGAGGTGTCGACTCGATCAGCTGG 29 25 0 GTGTCGACTC 0.806132 -109 GCGAGATGTTGGGTCGACTCAGTCCGCTGA 29 75 0 GGGTCGACTC 0.665616 -59 AGGCTTGGACGTGTCGAAACGATCGCGACC 31 267 0 GTGTCGAAAC 0.572377 -34 CGGCGCGATGGGTACCACCCGAGCCCCCGC 40 28 0 GGTACCACCC 0.640874 -175 ********** Masking position 7 Map Score: 5.40462 Number of sites scoring better than the average of aligned sites = 518 Number in coding regions = 458 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 12 AAGTCGCCAACCACGACCCAC 21 2 0 CCACGACCCA 0.9452 -299 TTTGATCACGCCACAACCCACCGACACCGT 21 195 1 CCACAACCCA 0.979241 -106 CACCGGTGATCGAAAACCCATCCGGTCACT 31 202 1 CGAAAACCCA 0.967742 -99 CCGGACCGGGCCAAAACCCAGTATTGAGAG 36 33 1 CCAAAACCCA 0.958053 -182 CCCAAAGTGGCGAAAACCCAAATTGACGAA 43 22 0 CGAAAACCCA 0.967742 -54 GTGCGACAATCCATTTCGCTCGG 44 4 1 CGACAATCCA 0.944141 -297 CAGCTACCTACGACTATCCACAGTTTCCAC 44 158 0 CGACTATCCA 0.806571 -143 ********** Masking position 6 Map Score: 4.99185 Number of sites scoring better than the average of aligned sites = 109 Number in coding regions = 94 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 13 CCCAGAGTTGGCCAGCGCTATCCGAC 1 5 1 GAGTGGCAGC 0.552088 -97 GCGATCACCGCCGCTGTGCGGCGAGGAGATCC 1 74 1 CCGTGTCGGC 0.766686 -28 AAGGCCCAAAACGATGGCCGGCCCATGCACCG 7 114 1 ACGTGGCGGC 0.842014 -187 CGCAGTGCCCGCGACGGACGGCTCAAGTTGTC 9 89 1 GCGCGGCGGC 0.986708 -205 CGTCGTCGCAGCGAGTGGCAGCGAGGACAACT 9 114 0 GCGGTGCAGC 0.591255 -180 GGCGTTCAGCGTATTGCGGCAACCGGACAT 10 41 0 GCGATTCGGC 0.855051 -20 GGGCTTCACGGCGCTGTCTGGCCCCAACCGCA 19 43 1 GCGTGTTGGC 0.789669 -134 TAACGCCACTGCGATTTTCTGCCCGAAATTTC 20 47 0 GCGTTTCTGC 0.916257 -150 GTGGGTCGTGGTTGGCGACTTGTACAGCT 21 8 1 GTGTTGCGAC 0.356315 -293 GTTTTCGTGGGCGCTTTTCTGCTGTTCAGCGG 21 143 0 GCGTTTCTGC 0.916258 -158 GAGTGTGACTGCGGCGGCCGGCGACGGTAGCG 22 39 1 GCGCGGCGGC 0.986703 -35 ATCTGCGCCCGGGTTTGGCGGCCGACGTCGGC 24 12 0 GGGTTGCGGC 0.904251 -256 CGCGATGGCTGCGACTACCTGCGCGGGCAGCG 25 13 0 GCGCTACTGC 0.391336 -73 CACTCGCTGGCCGGCCCCGGCATCA 26 105 0 TCGTGGCGGC 0.842014 -15 CCAACATCTCGCGGTGTTCGCCAGGGTGCCGA 29 93 1 GCGTGTCGCC 0.766685 -41 ACGAAACCTCGTGTTGGGCAGCCGAGTTGGAA 30 20 0 GTGTGGCAGC 0.855847 -209 AGGTGACCGGGTGCTTTACGGCGGCTCGATGA 31 151 0 GTGTTTCGGC 0.874022 -150 AATCTGCGCCGCGGTTGCCGTCGGGACCGTGC 35 86 0 GCGTTGCGTC 0.722499 -33 CGGCCCGCCGGCGGAGTCTGGCATTTACGACG 36 110 0 GCGAGTTGGC 0.4043 -105 CGGGCGGAAAGCGTTGGTCTGCAACGGCCCGC 36 134 0 GCGTGGCTGC 0.981765 -81 CGCGCGAATCGGGGTCGACGGCTGGCCGAGTG 36 164 1 GGGTCGCGGC 0.618466 -51 CGTCGAACGCGTGCTGTCCGGCGGG 36 200 1 GTGTGTCGGC 0.93422 -15 GGTACCCATCGCGCCGCGCTGCGGTGCGGGTC 40 42 1 GCGCGCCTGC 0.661092 -161 TCGTCAAGCTGTGCTTGACTGCTCGGCTCCTC 40 75 1 GTGTTGCTGC 0.848302 -128 TCGCCGAGCTGTGTTGGACTGCTCGGCTCCTC 40 133 1 GTGTGGCTGC 0.91966 -70 GCCACTTTGGGCGGCTTGCAGCCGGGACCACT 43 41 1 GCGCTTCAGC 0.724081 -35 CCAATCCAGCGCGGAAGCCTGCCTCAACGCCT 44 220 1 GCGAAGCTGC 0.355119 -81 *** *** **** Masking position 3 Map Score: 29.863 Number of sites scoring better than the average of aligned sites = 9329 Number in coding regions = 8732 Number in noncoding regions = 597 Number of orfs with sites within 600 bp upstream = 459 Fraction of orfs with sites within 600 bp upstream = 0.0737231 Motif number 14 CCGAGACCTAACCGGCGGCCCCGAAGC 2 8 1 CTAACCGGCG 0.611475 -81 TGACGGGAATCGAACCCGCGTATTCAGCTT 7 15 0 CGAACCCGCG 0.695113 -286 TGCCGTGCACCCAACCTGCGGCACGAAGCT 8 26 1 CCAACCTGCG 0.62387 -35 ACCTGCGGCACGAAGCTCCGTAAGATGACC 8 39 1 CGAAGCTCCG 0.332859 -22 TTGCTCCTGCGGTTCGTCGAC 10 2 1 TGCTCCTGCG 0.869098 -59 GTTCGAATCCTGCACCTGCCACCACGGTCA 12 133 0 TGCACCTGCC 0.447078 -149 GTGCAGGATTCGAACCTGCGTAGCTTTCGC 12 148 1 CGAACCTGCG 0.939262 -134 TTCTCCGACTCTCATCATCGATTGGACACT 14 25 1 CTCATCATCG 0.121801 -177 GCCCGAACTGTGCACCAGCGGTACAGGACG 16 24 1 TGCACCAGCG 0.618113 -66 AACAATTGGCCGAATCTTCGCAGTGCGTGC 17 22 0 CGAATCTTCG 0.607412 -62 TTACCTGGATTTAACCTGCGCCCGTCCGAA 19 101 0 TTAACCTGCG 0.549893 -76 CCGAGCGTAACGCCACTGCGAAATTTCGGG 20 28 1 CGCCACTGCG 0.794787 -169 GCGAGCGTAACGCCACTGCGATTTTCTGCC 20 56 0 CGCCACTGCG 0.794787 -141 CGTTTCGGCGCGCATCGTCGCCAGGCTAGA 20 111 1 CGCATCGTCG 0.530821 -86 CGTTTCGGCGCGCATCGTCGCCAGGCTAAG 20 167 1 CGCATCGTCG 0.530821 -30 ATCGGTATACCGCTTCTGCGTAACGATTTG 21 234 0 CGCTTCTGCG 0.931464 -67 ACCCGGGCGCAGATCCTGCGCGCCGCGATG 24 30 1 AGATCCTGCG 0.26192 -238 GGTCGCCAGCTGCAGCTGCTCCTTGGCGCC 24 153 0 TGCAGCTGCT 0.45169 -115 CGGGCGCAGCTGCACCTGCGCGGGGTCGAG 27 36 1 TGCACCTGCG 0.946454 -85 ACTCATCTGCGCCGCTCCTCC 28 2 1 CTCATCTGCG 0.940226 -299 ACCGGCGCGACTCATCTGCGCCGCTCCTGC 28 55 1 CTCATCTGCG 0.940226 -246 TCATCTGCGCCGCTCCTGCTCATCGCTTCG 28 66 1 CGCTCCTGCT 0.807233 -235 ACCGGCGCGACTCATCTGCGCCGCTCCTGC 28 108 1 CTCATCTGCG 0.940226 -193 TCATCTGCGCCGCTCCTGCTCATCGCTTCG 28 119 1 CGCTCCTGCT 0.807233 -182 ACCGGCGCGACTCATCTGCGCCGCTCCTGC 28 161 1 CTCATCTGCG 0.940226 -140 TCATCTGCGCCGCTCCTGCTCATCGCTTCG 28 172 1 CGCTCCTGCT 0.807233 -129 ACCGGCGCGACTCATCTGCGCCGCTCCTCC 28 214 1 CTCATCTGCG 0.940226 -87 GCCGCGGCATCGGTGCTGCGGGTGGATCAT 30 60 1 CGGTGCTGCG 0.452238 -169 CCACACACACTAATCTGCGCCGCGGTTGC 35 100 0 CTAATCTGCG 0.806869 -19 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 40 101 1 CGCCGCTGCG 0.509322 -102 CTCCTCCTCACGCCGCTGCGCGGCGTGCAT 40 159 1 CGCCGCTGCG 0.509322 -44 GCGTCGGACCCGCCGCTGCGGTGGACCATC 41 13 1 CGCCGCTGCG 0.509322 -37 ********** Masking position 6 Map Score: 40.4109 Number of sites scoring better than the average of aligned sites = 7429 Number in coding regions = 6864 Number in noncoding regions = 565 Number of orfs with sites within 600 bp upstream = 372 Fraction of orfs with sites within 600 bp upstream = 0.0597494 Motif number 15 TGGTCGATAGCCTAGCGGGCCGTAGG 6 7 1 ATAGCCTAGC 0.234089 -29 CTGAACGTCGGTGGCCCGGCGGCAAGGCGG 7 82 1 GTGGCCCGGC 0.857671 -219 TCGCGGGCACTGCGCCCGGCCAGCGTAAGT 9 73 0 TGCGCCCGGC 0.877974 -221 ACGGCTCAAGTTGTCCTCGCTGCCACTCGC 9 106 1 TTGTCCTCGC 0.596428 -188 GCTGCGACGACGGGCCTGGCCTCACCGTCC 9 134 1 CGGGCCTGGC 0.977708 -160 CGTGAACCTCGCTTGAAATCCT 11 66 0 TGAACCTCGC 0.482227 -12 CACCAACGCGCGGGCGTGGCCATGCCCGGC 12 82 1 CGGGCGTGGC 0.731171 -200 CGAGTGGTCCCTAGCCTCGGCCGGAACGCC 13 46 0 CTAGCCTCGG 0.392985 -53 GTGATAGCGGTTGACCTGGCATAATCGATG 15 61 1 TTGACCTGGC 0.707813 -90 ATGGGGAACATGAGCCCCGCCGCACCGGGC 18 61 1 TGAGCCCCGC 0.93626 -240 CTCACCCCACCGATCCCAGCCGCCGCGTCC 18 148 0 CGATCCCAGC 0.487585 -153 GCAATCGGATCTAGCCTGGCGACGATGCGC 20 120 0 CTAGCCTGGC 0.926632 -77 AGCCGTGACCTTAGCCTGGCGACGATGCGC 20 176 0 TTAGCCTGGC 0.929841 -21 AGACGCTGGCTTAGCCCAGCACAGGGCCGT 21 267 0 TTAGCCCAGC 0.808499 -34 ACTCGCTGGCCGGCCCCGGCATCACATACC 26 99 0 CGGCCCCGGC 0.834739 -21 AAGCAGGTTGTGGGCCTAGCGGACTCGGAG 27 75 0 TGGGCCTAGC 0.908873 -46 GGACCGTGCCTGGGCCCCGGCCACGACCGT 35 65 0 TGGGCCCCGG 0.776189 -54 ATACTGGGTTTTGGCCCGGTCCGGGCTGGA 36 27 0 TTGGCCCGGT 0.627755 -188 AGCCCATAACCTAGCTCGGCGACGATGCAC 40 183 0 CTAGCTCGGC 0.437191 -20 TTCAGCCTAGTGGTCCCGGCTGCAAGCCGC 43 51 0 TGGTCCCGGC 0.900358 -25 TCCACAGTTGTGGGCCTGGCTGACGGATGG 44 79 1 TGGGCCTGGC 0.978735 -222 ********** Masking position 5 Map Score: 15.679 Number of sites scoring better than the average of aligned sites = 7464 Number in coding regions = 6904 Number in noncoding regions = 560 Number of orfs with sites within 600 bp upstream = 419 Fraction of orfs with sites within 600 bp upstream = 0.0672984