AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00561_mtub_reg_300.orf -o00561_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: cdsA 22 cdsA frr 171 frr Input sequences: #1 Rv0144 101 hypothetical protein Rv0144 #2 Rv0145 88 hypothetical protein Rv0145 #3 Rv0146 42 hypothetical protein Rv0146 #4 Rv0147 94 hypothetical protein Rv0147 #5 Rv0223c 98 hypothetical protein Rv0223c #6 Rv0224c 35 hypothetical protein Rv0224c #7 glpQ2 300 glpQ2 #8 psd 60 psd #9 Rv0439c 293 hypothetical protein Rv0439c #10 gpdA1 60 gpdA1 #11 Rv0565c 77 hypothetical protein Rv0565c #12 Rv0566c 281 hypothetical protein Rv0566c #13 adhB 98 adhB #14 Rv0767c 201 hypothetical protein Rv0767c #15 argS 300 argS #16 thrB 217 thrB #17 rho 256 rho #18 rpmE 150 rpmE #19 prfA 89 prfA #20 rfe 83 rfe #21 gap 300 gap #22 fadD11' 176 fadD11' #23 ilvG 70 ilvG #24 pgsA2 196 pgsA2 #25 Rv1861 300 hypothetical protein Rv1861 #26 adhA 73 adhA #27 murE 22 murE #28 hypothetical 267 hypothetical protein Rv2160c #29 Rv2161c 102 hypothetical protein Rv2161c #30 PE_PGRS 209 PE_PGRS #31 Rv2166c 300 hypothetical protein Rv2166c #32 Rv2182c 85 hypothetical protein Rv2182c #33 Rv2184c 119 hypothetical protein Rv2184c #34 Rv2185c 104 hypothetical protein Rv2185c #35 Rv2186c 165 hypothetical protein Rv2186c #36 Rv2250c 120 hypothetical protein Rv2250c #37 adhE2 300 adhE2 #38 yjcE 133 yjcE #39 Rv2484c 228 hypothetical protein Rv2484c #40 lipQ 300 lipQ #41 thrS 300 thrS #42 pgsA3 30 pgsA3 #43 pyrH 234 pyrH #44 ddlA 77 ddlA #45 gpdA2 118 gpdA2 #46 fecB 214 fecB #47 adhC 69 adhC #48 Rv3292 30 hypothetical protein Rv3292 #49 aldB 26 aldB #50 lpdA 202 lpdA #51 glpK 49 glpK #52 Rv3697c 250 hypothetical protein Rv3697c #53 Rv3816c 75 hypothetical protein Rv3816c #54 Rv3843c 300 hypothetical protein Rv3843c Motif number 1 GATCACCGCCGCTGTGCGGCGAGGAGATCC 1 76 1 GCTGTGCGGC 0.5061 -26 GAGACCTAACCGGCGGCCCCGAAGCGTAGT 2 13 1 CGGCGGCCCC 0.967328 -76 GGCTTGGGTAGGGTGACGCCATGACCGCCG 5 39 1 GGGTGACGCC 0.9091 -60 ACGCCATGACCGCCGGCGACGATGCCGAGC 5 54 1 CGCCGGCGAC 0.973962 -45 CGGCGACGATGCCGAGCGCAGCGATGAGGA 5 67 1 GCCGAGCGCA 0.793419 -32 ATGCGCCGCTCCTCCTCATCGC 5 87 0 GCGCCGCTCC 0.921556 -12 AACGTCGGTGGCCCGGCGGCAAGGCGGGGA 7 85 1 GCCCGGCGGC 0.993356 -216 GGCGGCAAGGCGGGGAAGGCCCAAAACGAT 7 99 1 CGGGGAAGGC 0.709926 -202 CCAAAACGATGGCCGGCCCATGCACCGTCG 7 119 1 GGCCGGCCCA 0.802143 -182 ACGGCGCGGTCGGCGACGACGGTGCATGGG 7 135 0 CGGCGACGAC 0.921687 -166 TGCACAGGAACCGTCGCCGACAGAGCGGTG 7 205 1 CCGTCGCCGA 0.668924 -96 GCGTCCACGCCGGGGGCAGCACCGCTCTGT 7 224 0 CGGGGGCAGC 0.922599 -77 GCTGCCCCCGGCGTGGACGCCCCCGGCGGC 7 234 1 GCGTGGACGC 0.465662 -67 GCGTGGACGCCCCCGGCGGCCGAGGCTATG 7 244 1 CCCCGGCGGC 0.993996 -57 TGATGAGCGACGGTGGCGCACCTACC 7 285 1 CGGTGGCGCA 0.88694 -16 CCGCAGGTTGGGTGCACGGCACTAGGATCG 8 17 0 GGTGCACGGC 0.604042 -44 CACCCAACCTGCGGCACGAAGCTCCGTAAG 8 33 1 GCGGCACGAA 0.665036 -28 GGGGGTCACCGGGTGACGGCAACCCCGCTA 9 44 1 GGGTGACGGC 0.923815 -250 ACTTACGCTGGCCGGGCGCAGTGCCCGCGA 9 73 1 GCCGGGCGCA 0.96219 -221 GGCGCAGTGCCCGCGACGGACGGCTCAAGT 9 87 1 CCGCGACGGA 0.905426 -207 AGTGCAAGAAGCCCCGCACCGGGTCATGCC 9 222 1 GCCCCGCACC 0.837041 -72 CCGGATCGGAGGGCCGAGGACACGGTCGAA 9 257 0 GGGCCGAGGA 0.497002 -37 TCCTGCGGTTCGTCGACGGATATCAAATGT 10 15 1 CGTCGACGGA 0.615761 -46 ATCAAATGTCCGGTTGCCGCAATACGCTGA 10 36 1 CGGTTGCCGC 0.497387 -25 GCCGCAATACGCTGAACGCC 10 51 1 GCTGAACGCC 0.597194 -10 CGGCGCGACACCCGCACTCCAACAATTTCG 12 23 0 CCCGCACTCC 0.741846 -259 TCGGTAGACAGCGGCGCGACACCCGCACTC 12 34 0 GCGGCGCGAC 0.937953 -248 GGCATGGCCACGCCCGCGCGTTGGTGCCCC 12 78 0 CGCCCGCGCG 0.586768 -204 GCGTGGCCATGCCCGGCGCCCATGCCCGGA 12 95 1 GCCCGGCGCC 0.992019 -187 GACTGTAAATCCGTCGCGAAAGCTACGCAG 12 163 0 CCGTCGCGAA 0.722779 -119 CGGCAGGTTGCCCGAGCGGCCAATGGGAGC 12 194 0 CCCGAGCGGC 0.961878 -88 ACGCCCTAGCGCCGTTGACCTAC 13 4 1 CCCTAGCGCC 0.874538 -95 CTAGCCTCGGCCGGAACGCCGACTGGCTGA 13 36 0 CCGGAACGCC 0.876911 -63 CGGTGTAGCGGCCTTGCGGATACGGTCTCG 14 73 0 GCCTTGCGGA 0.43899 -129 GATGCACCAGGGGCCACGTCGCGTCGCGGA 14 111 1 GGGCCACGTC 0.476629 -91 GGGCCACGTCGCGTCGCGGACAGTCCCATG 14 121 1 GCGTCGCGGA 0.885182 -81 GGTTCTTACCCCGACGAATTTGAGAGCG 15 9 1 CCCCGACGAA 0.701613 -292 CCACCCGCGAGGGCGGCCGCATAGTTGGCT 15 48 0 GGGCGGCCGC 0.970726 -253 CCGCCCTCGCGGGTGGCGCCGATCACATTG 15 62 1 GGGTGGCGCC 0.974081 -239 GGTTGATCTAGCCTCACGCATGGCTACAAC 15 91 0 GCCTCACGCA 0.57118 -210 CGAATCCTGCCGGGGGCACAAGGGTTGATC 15 113 0 CGGGGGCACA 0.643864 -188 CCCTGAGCTACGGGGGCGCACGACGACACG 15 181 1 CGGGGGCGCA 0.962219 -120 CGCTACTCTGGCGGGGCCCCATGGCGCAAC 15 210 0 GCGGGGCCCC 0.946297 -91 GGTGGTCAGTGGGTAGCCGCGATGCGCTAC 15 234 0 GGGTAGCCGC 0.627991 -67 CCACTGACCACCGCAACGGATTCGAAGCCC 15 252 1 CCGCAACGGA 0.589844 -49 GCGATCGCAAGCGCGGCGGAGCCGGGTGCG 16 13 1 GCGCGGCGGA 0.972101 -205 GCGGCGGAGCCGGGTGCGGCGGGTCGGCAC 16 25 1 CGGGTGCGGC 0.844481 -193 GCGATCGCAAGCGCGGCGGAGCCGGGTGCG 16 70 1 GCGCGGCGGA 0.972101 -148 GCGGCGGAGCCGGGTGCGGCGGGTCGGCAC 16 82 1 CGGGTGCGGC 0.844481 -136 GCGATCGCAAGCGCGGCGGAGCCGGGTGCG 16 127 1 GCGCGGCGGA 0.972101 -91 GCGGCGGAGCCGGGTGCGGCGGGTCGGCAC 16 139 1 CGGGTGCGGC 0.844481 -79 GCGATCGCAAGCGCGGCGGAGCCGGGTGCG 16 184 1 GCGCGGCGGA 0.972101 -34 GCGGCGGAGCCGGGTGCGGCGGGTCGGCAC 16 196 1 CGGGTGCGGC 0.844481 -22 AGCAAGCAAACCCCCGCAACCTTGCGGA 17 9 0 CCCCCGCAAC 0.70489 -248 TGCTGCGATTGCTGGACGGCTCCGAGGATA 17 57 0 GCTGGACGGC 0.921918 -200 GGCTGTCCTAGCGGCAAGGCAGTACGTATG 17 91 0 GCGGCAAGGC 0.477827 -166 TCGGCGATTTGGCTGACTGCAACAAAACCC 17 200 1 GGCTGACTGC 0.525109 -57 TCCTTTCCTTCCCCCGCTGATCACGTCATA 17 232 0 CCCCCGCTGA 0.695917 -25 TCCGGCGAGACGGCTCGCCGG 18 2 1 CCGGCGAGAC 0.725074 -149 GCGGACATTCCCGGCGAGCCGTCTCGCCGG 18 12 0 CCGGCGAGCC 0.788893 -139 CCTCTGTGATCGGTGGCCGCCCGTCGTGGC 18 126 0 CGGTGGCCGC 0.924378 -25 CTTCCCGCGAGCGCGGACCCTAACGCGAAC 19 61 0 GCGCGGACCC 0.678725 -29 CCGCCGAACGTGCACGCACTGCGAAGAT 20 9 1 CGTGCACGCA 0.493302 -75 GGGAACATGAGCCCCGCCGCACCGGGCCGT 21 64 1 GCCCCGCCGC 0.853588 -237 CCGATCCCAGCCGCCGCGTCCCTACCGCGG 21 139 0 CCGCCGCGTC 0.839588 -162 GGATCGGTGGGGTGAGCGCCCGGCTTCTCA 21 162 1 GGTGAGCGCC 0.807618 -139 GGTAAGAGTCCCGGGGCTCCCCTCGCTTTG 21 190 0 CCGGGGCTCC 0.954686 -111 GACTCTTACCGGCCGAAGGCGGCGGGTGTC 21 210 1 GGCCGAAGGC 0.622817 -91 CACTGATCTAGGCTGACGGCCAGTGGTTGT 21 239 1 GGCTGACGGC 0.906706 -62 CGGTGGGTGTGGCCGGCTGACGGGATGGTT 22 14 0 GGCCGGCTGA 0.701545 -163 CACCCACCGGGCTTCACGGCGCTGTCTGGC 22 35 1 GCTTCACGGC 0.676226 -142 CTGGCCCCAACCGCAGCGAAGCCTACGAAA 22 60 1 CCGCAGCGAA 0.632941 -117 CTACGAAAAAGCCGGGCGCTTCGGACGGGC 22 82 1 GCCGGGCGCT 0.651401 -95 TCCAGGTAACGCGTGACGAATCTCGCGAGG 22 122 1 GCGTGACGAA 0.478203 -55 CGAGACCCGTGGCGGCCCATGGCCGC 22 161 0 CCGTGGCGGC 0.985849 -16 CGGCGCTTACGCTGGGCAGC 24 1 0 GCTGGGCAGC 0.768242 -196 TAAGCGCCGAGCGTAACGCCACTGCGAAAT 24 22 1 GCGTAACGCC 0.669691 -175 AGTGGCGTTACGCTCGCGGCTAGGGGTGCC 24 69 1 CGCTCGCGGC 0.877105 -128 GCGGGCTGTGGGGGCACCCCTAGCCGCGAG 24 81 0 GGGGCACCCC 0.514539 -116 ATCGGATCTAGCCTGGCGACGATGCGCGCC 24 117 0 GCCTGGCGAC 0.940666 -80 AGATCCGATTGCCCGGCTCCTCAGCCCGCC 24 138 1 GCCCGGCTCC 0.93427 -59 GCGCCGAAACGGCGGGCTGAGGAGCCGGGC 24 148 0 GGCGGGCTGA 0.722021 -49 CGTGACCTTAGCCTGGCGACGATGCGCGCC 24 173 0 GCCTGGCGAC 0.940666 -24 GTGGGTCGTGGTTGGCGACTTGTACAGCT 25 10 1 GGTTGGCGAC 0.766889 -291 CTGCCCGTCCCCGGCGCGACCTATGGAGAA 25 45 0 CCGGCGCGAC 0.977863 -256 CCGTGCGAAACGCCGACACCGTTGAACTCC 25 102 1 CGCCGACACC 0.645959 -199 AGCAGAAAAGCGCCCACGAAAACACCGTGG 25 152 1 CGCCCACGAA 0.537879 -149 AAAACACCGTGGGGCGCCACACACGTTTGA 25 170 1 GGGGCGCCAC 0.845883 -131 TGACTGCGGCGGCCGGCGACGGTAGCGGCA 26 44 1 GGCCGGCGAC 0.971879 -30 CTACCGACAGGGCGCGCACAC 27 2 0 GGCGCGCACA 0.457529 -21 CGCCGACGTCGGCCGCCAAACCCGGG 28 7 1 CGTCGGCCGC 0.890216 -261 GGCCGCCAAACCCGGGCGCAGATCCTGCGC 28 21 1 CCCGGGCGCA 0.965155 -247 GGGCGCAGATCCTGCGCGCCGCGATGGATA 28 34 1 CCTGCGCGCC 0.869225 -234 GATGGACAGCCCCGAGAGCCCCTTCACCGA 28 69 0 CCCGAGAGCC 0.564407 -199 CGGCGAGCTTGCCGGGCGGCTGGGCATGAG 28 98 1 GCCGGGCGGC 0.879639 -170 TGCAGCTGCTCCTTGGCGCCGAAATGCCGG 28 143 0 CCTTGGCGCC 0.928522 -125 CCTCGACGGTCGCCAGCTGCAGCTGCTCCT 28 160 0 CGCCAGCTGC 0.675381 -108 CAGCTGGCGACCGTCGAGGCCGCCGTGAGC 28 171 1 CCGTCGAGGC 0.720578 -97 GCTTCGAACACGCTCACGGCGGCCTCGACG 28 182 0 CGCTCACGGC 0.864529 -86 GCGCTGCCATCGCGGGAGCCACGACCTCGG 28 211 0 CGCGGGAGCC 0.86452 -57 CCCGGTCCACCCCGGGCGGCGCTGCCATCG 28 229 0 CCCGGGCGGC 0.991444 -39 GGGTGGACCGGGTGCGCGCCCTCATGCATG 28 247 1 GGTGCGCGCC 0.529313 -21 CCCGGGCCCCGAGCGAGCGG 29 1 1 CCCGGGCCCC 0.969857 -102 ATGCCGGATTGCGTGACCGCTCGCTCGGGG 29 17 0 GCGTGACCGC 0.794305 -86 CGGCGGCGGCTTTCATTAAG 29 93 0 CGGCGGCGGC 0.993476 -10 GGCGGCGGCGCCGGTAACGGCG 30 3 1 CGGCGGCGCC 0.992093 -207 GAAACGAACCGGCGCGCGCCGTTACCGGCG 30 19 0 GGCGCGCGCC 0.499898 -191 CTGACGATCGGGTTGGCGGAAGCTCTTTTA 30 81 1 GGTTGGCGGA 0.665005 -129 TCCGGACTCACCGGGGCGGTTCACCCAGCC 31 30 1 CCGGGGCGGT 0.752729 -271 CGCCGACAGCCGGTGACGACCCGGCTGGGT 31 52 0 CGGTGACGAC 0.800231 -249 GACTCAATATCGCCGACAGCCGGTGACGAC 31 62 0 CGCCGACAGC 0.688904 -239 CCACCCATTTGCCCGGCGACATGCGGTTTT 31 131 1 GCCCGGCGAC 0.978987 -170 CGCGCGGCTAGCCCGGCTACGACCTCAGAA 31 159 0 GCCCGGCTAC 0.840035 -142 AGCCGGGCTAGCCGCGCGCTTCAGTGGTAC 31 171 1 GCCGCGCGCT 0.492814 -130 CTACCTGCGCGGGCAGCGGC 32 1 0 GGGCAGCGGC 0.954799 -85 CCCTCCCTCTCGCCCACACCGGATGGTGTC 32 64 0 CGCCCACACC 0.549017 -22 GTGATTCCGGTACGCCGGCTCAGGCC 33 7 1 CCGGTACGCC 0.785948 -113 ATACCGCGGTGGCGGACGCCAGAGTGGACT 33 74 0 GGCGGACGCC 0.952669 -46 CACTCGCTGGCCGGCCCCGGCATCACAT 33 102 0 GGCCGGCCCC 0.956546 -18 TCCCGATCTCCCGGGGAGAAACGGTACTCC 34 32 0 CCGGGGAGAA 0.420859 -73 CGATCATCTGCGGGAGCTCCCGATCTCCCG 34 49 0 CGGGAGCTCC 0.701283 -56 CCCGCAAGCGGGTCGGCCCCGATCATCTGC 34 68 0 GGTCGGCCCC 0.86058 -37 GCAAACCGGACCCGGAAGACGGCAACAGGT 35 28 0 CCCGGAAGAC 0.447629 -138 ACCCCTCTAGGCTTGACGACAGCAAACCGG 35 49 0 GCTTGACGAC 0.529606 -117 GGGGTTGATGCCGGTGCGGAATAGACCGAT 35 74 1 CCGGTGCGGA 0.773907 -92 CCGTGGGCAAGCCGGACCCCGAAGGGCACC 35 122 0 GCCGGACCCC 0.878384 -44 TCCGCCCTGTCGGGGGCAGACCACG 36 6 0 CGGGGGCAGA 0.68694 -115 ACAGGGCGGACGGGCGCAGCTGCACCTGCG 36 26 1 CGGGCGCAGC 0.798327 -95 CGCAGCTGCACCTGCGCGGGGTCGAGTTCG 36 40 1 CCTGCGCGGG 0.371559 -81 GGTCGAGTTCGGGCTGCTCCGAGTCCGCTA 36 59 1 GGGCTGCTCC 0.518011 -62 CAGGTTGTGGGCCTAGCGGACTCGGAGCAG 36 72 0 GCCTAGCGGA 0.589705 -49 ACTCATCTGCGCCGCTCCTCCTCATCGC 37 9 1 GCGCCGCTCC 0.921556 -292 TGCATCGTCACCGGCGCGACTCATCTGCGC 37 46 1 CCGGCGCGAC 0.977863 -255 CGACTCATCTGCGCCGCTCCTGCTCATCGC 37 62 1 GCGCCGCTCC 0.921556 -239 TGCATCGTCACCGGCGCGACTCATCTGCGC 37 99 1 CCGGCGCGAC 0.977863 -202 CGACTCATCTGCGCCGCTCCTGCTCATCGC 37 115 1 GCGCCGCTCC 0.921556 -186 TGCATCGTCACCGGCGCGACTCATCTGCGC 37 152 1 CCGGCGCGAC 0.977863 -149 CGACTCATCTGCGCCGCTCCTGCTCATCGC 37 168 1 GCGCCGCTCC 0.921556 -133 TGCATCGTCACCGGCGCGACTCATCTGCGC 37 205 1 CCGGCGCGAC 0.977863 -96 CGACTCATCTGCGCCGCTCCTCCTCATCGC 37 221 1 GCGCCGCTCC 0.921556 -80 TGCATCGTCACCGGCGCGCATGGTCAGCGA 37 258 1 CCGGCGCGCA 0.957399 -43 CGGCGCGCATGGTCAGCGACGCTACACCGT 37 269 1 GGTCAGCGAC 0.592157 -32 CTGACAACGTGGCGCACGGCACAATGTCAT 38 49 0 GGCGCACGGC 0.507582 -85 TGTTTCGGCACCCTGGCGAACACCGCGAGA 38 99 0 CCCTGGCGAA 0.759178 -35 ACCTCGTGTTGGGCAGCCGAGTTGGAACGG 39 17 0 GGGCAGCCGA 0.478101 -212 AGCACCGATGCCGCGGCCACGACCGACGAA 39 47 0 CCGCGGCCAC 0.936492 -182 CATGATCCACCCGCAGCACCGATGCCGCGG 39 61 0 CCGCAGCACC 0.643333 -168 TGCTTCAAACCCGCCACCGCCACGCACCAC 39 144 0 CCGCCACCGC 0.891303 -85 AGTTGCCCAACCCGCGCGGGGTCGTGGCC 39 210 1 CCCGCGCGGG 0.460927 -19 CACAGTGCCCCCGGCACGACTCGAACGTGC 40 45 1 CCGGCACGAC 0.92115 -256 TGGAAAAATTCCTCGACGGCCACCGTTAGA 40 142 0 CCTCGACGGC 0.921639 -159 GAAAGGTCTACCGCCACGTCAATTATTGGT 40 186 1 CCGCCACGTC 0.570583 -115 GTACAAAACCGGCTGGCAACCAGCCGTTTA 40 238 1 GGCTGGCAAC 0.45504 -63 CGAGTTGCTACGGTAGCGGCCCGTCGGCGG 41 17 1 CGGTAGCGGC 0.886158 -284 AGCGGCCCGTCGGCGGCGACCGCCGCCAGC 41 31 1 CGGCGGCGAC 0.978885 -270 CGGTCAGCGACGCTGGCGGCGGTCGCCGCC 41 42 0 CGCTGGCGGC 0.976503 -259 CCGCCAGCGTCGCTGACCGCTCCCCGTCCA 41 53 1 CGCTGACCGC 0.714697 -248 CCCAGCAGGACGTCGACGACGGACAGTCGA 41 94 0 CGTCGACGAC 0.726462 -207 CGGTACCGATCGCCCACACCGGTGATCGAA 41 186 1 CGCCCACACC 0.549017 -115 CGGTCGTCGACGTGCGCCCCGATAGCATGG 41 239 1 CGTGCGCCCC 0.748245 -62 CCCTCGCGGAGATGTCTGCC 43 1 1 CCCTCGCGGA 0.873357 -234 GAGATGTCTGCCGGTACCCCTGGGTACCCG 43 19 1 CCGGTACCCC 0.472015 -216 GCCTGGCCTCGGCCGGCCCCTCGTTGTTGC 43 114 1 GGCCGGCCCC 0.956546 -121 TAACGCACCCCGCCCACGCCGGAGCGCGGC 43 149 1 CGCCCACGCC 0.944735 -86 TGCCTCAATAGCCGCGCTCCGGCGTGGGCG 43 159 0 GCCGCGCTCC 0.77909 -76 CAGTGCCATCCCGGCACCACCAGGACGGCA 43 199 0 CCGGCACCAC 0.733966 -36 CGTGCCGGCCCGTGCGAGGC 44 1 0 CGTGCGAGGC 0.569358 -77 CTCGCACGGGCCGGCACGACCGAAAACTGC 44 13 1 CCGGCACGAC 0.92115 -65 AACTGCAGCTCGTGGGAGCCCGTCTGCCTG 44 37 1 CGTGGGAGCC 0.641872 -41 CCGGCCACGACCGTGGCGGCAATGCCGTCG 45 49 0 CCGTGGCGGC 0.985849 -70 CGTGCCTGGGCCCCGGCCACGACCGTGGCG 45 61 0 CCCCGGCCAC 0.922467 -58 CCGACGGCAACCGCGGCGCAGATTAGTGTG 45 94 1 CCGCGGCGCA 0.968819 -25 CCCTCGATCAGGCTGGCGGCAGGCCTGGTC 46 72 1 GGCTGGCGGC 0.967982 -143 TGCAACGGCCCGCCGGCGGAGTCTGGCATT 46 117 0 CGCCGGCGGA 0.957575 -98 CCCCGATTCGCGCGGGCGGAAAGCGTTGGT 46 148 0 CGCGGGCGGA 0.961446 -67 CGCGAATCGGGGTCGACGGCTGGCCGAGTG 46 166 1 GGTCGACGGC 0.889637 -49 CCCGCCGGACAGCACGCGTTCGA 46 202 0 GCCGGACAGC 0.749111 -13 CCAAAGCCTAGCGCTGCGCCTCA 47 4 0 GCGCTGCGCC 0.923097 -66 GGCCGGAGACTATCGCAACG 48 1 1 GGCCGGAGAC 0.664423 -30 GCGGCACTGCCGTTGCGATA 48 21 0 GCGGCACTGC 0.793585 -10 ATGGGTACCACCCGAGCCCCCGCCGTCTAA 50 21 0 CCCGAGCCCC 0.839972 -182 TACCCATCGCGCCGCGCTGCGGTGCGGGTC 50 44 1 GCCGCGCTGC 0.761119 -159 GTGCTTGACTGCTCGGCTCCTCCTCACGCC 50 85 1 GCTCGGCTCC 0.799005 -118 TCCTCACGCCGCTGCGCGGCGTGCATCGTC 50 105 1 GCTGCGCGGC 0.519818 -98 GTCCAACACAGCTCGGCGACGATGCACGCC 50 122 0 GCTCGGCGAC 0.928724 -81 GTGTTGGACTGCTCGGCTCCTCCTCACGCC 50 143 1 GCTCGGCTCC 0.799005 -60 TCCTCACGCCGCTGCGCGGCGTGCATCGTC 50 163 1 GCTGCGCGGC 0.519818 -40 CCATAACCTAGCTCGGCGACGATGCACGCC 50 180 0 GCTCGGCGAC 0.928724 -23 TGATGGTCCACCGCAGCGGCGGGTCCGACG 51 14 0 CCGCAGCGGC 0.968593 -36 GCGCTCCTCGCGCTGGCGTCGTTTCAACGC 52 79 0 CGCTGGCGTC 0.615059 -172 GCAATTCGGAGGCGAGCTGCCCTAACGTTT 52 110 0 GGCGAGCTGC 0.679701 -141 TTTGGAGGAGGCTCGGCCGCCAGAGCTTGC 52 144 0 GCTCGGCCGC 0.909897 -107 GACATCCGCTGGTCGACTGCCGACTTGCGG 52 178 1 GGTCGACTGC 0.476056 -73 CGGCTTGCAGCCGGGACCACTAGGCTGAAC 53 52 1 CCGGGACCAC 0.805318 -24 CTGGCAGGTACCCGAGCGAAATGGATTGTC 54 15 0 CCCGAGCGAA 0.605893 -286 TTGTGGGCCTGGCTGACGGATGGAGCCGGT 54 86 1 GGCTGACGGA 0.643105 -215 GCGCCCGGTCGCGGCACGTCCAGCACGACA 54 188 0 GCGGCACGTC 0.572613 -113 GTGCCGCGACCGGGCGCGCCCAATCCAGCG 54 201 1 CGGGCGCGCC 0.788348 -100 CCCAATCCAGCGCGGAAGCCTGCCTCAACG 54 219 1 CGCGGAAGCC 0.619308 -82 CGGAAGCCTGCCTCAACGCCTGTTGACGGC 54 231 1 CCTCAACGCC 0.592775 -70 CCGCCCCGCACCGGTACGGCATTGTCCGCG 54 260 0 CCGGTACGGC 0.811714 -41 CCGTACCGGTGCGGGGCGGAGAAGTCACTA 54 271 1 GCGGGGCGGA 0.974617 -30 ********** Masking position 7 Map Score: 271.134 Number of sites scoring better than the average of aligned sites = 132078 Number in coding regions = 123618 Number in noncoding regions = 8460 Number of orfs with sites within 600 bp upstream = 1772 Fraction of orfs with sites within 600 bp upstream = 0.284613 Motif number 2 CGCCGCACAGCGGCGGTGATCGCGTACGTC 1 67 0 CGGCGGTGAT 0.945009 -35 GCATCGTCGCCGGCGGTCATGGCGTCACCC 5 49 0 CGGCGGTCAT 0.861387 -50 TGTGACACGTCGACGCTGATGGTGATGCTG 7 55 1 CGACGCTGAT 0.628647 -246 TGATGCTGAACGTCGGTGGCCCGGCGGCAA 7 77 1 CGTCGGTGGC 0.896781 -224 GGCGGCAAGGCGGGGAAGGCCCAAAACGAT 7 99 1 CGGGGAAGGC 0.63882 -202 AAACGATGGCCGGCCCATGCACCGTCGTCG 7 122 1 CGGCCCATGC 0.764819 -179 CGCTCCCATACGGCGCGGTCGGCGACGACG 7 144 0 CGGCGCGGTC 0.972274 -157 GGGGCGTCCACGCCGGGGGCAGCACCGCTC 7 227 0 CGCCGGGGGC 0.982517 -74 TAGCCTCGGCCGCCGGGGGCGTCCACGCCG 7 242 0 CGCCGGGGGC 0.982517 -59 ACCTGATGAGCGACGGTGGCGCACCTACC 7 282 1 CGACGGTGGC 0.909626 -19 GGGGATGAAACGGGGGTCACCGGGTGACGG 9 33 1 CGGGGGTCAC 0.911901 -261 TTGAGCCGTCCGTCGCGGGCACTGCGCCCG 9 85 0 CGTCGCGGGC 0.928772 -209 GCTGCGACGACGGGCCTGGCCTCACCGTCC 9 134 1 CGGGCCTGGC 0.96523 -160 GCCCCTCGTTCGACCGTGTCCTCGGCCCTC 9 249 1 CGACCGTGTC 0.276777 -45 GCGGGTGTCGCGCCGCTGTCTACCGACCGT 12 38 1 CGCCGCTGTC 0.933193 -244 CACCAACGCGCGGGCGTGGCCATGCCCGGC 12 82 1 CGGGCGTGGC 0.944501 -200 CGGGCATGGGCGCCGGGCATGGCCACGCCC 12 93 0 CGCCGGGCAT 0.676945 -189 ACCAGCTTGACCGTGGTGGCAGGTGCAGGA 12 126 1 CCGTGGTGGC 0.72567 -156 ACGCCCTAGCGCCGTTGACCTACACTCAG 13 10 1 CGCCGTTGAC 0.489214 -89 GTCGGCGTTCCGGCCGAGGCTAGGGACCAC 13 43 1 CGGCCGAGGC 0.95208 -56 GGCCGCTACACCGTCCTGACCGATGCACCA 14 90 1 CCGTCCTGAC 0.348052 -112 GGCCACGTCGCGTCGCGGACAGTCCCATGT 14 122 1 CGTCGCGGAC 0.85608 -80 CGGCCGCCCTCGCGGGTGGCGCCGATCACA 15 59 1 CGCGGGTGGC 0.958327 -242 TCGAATCCTGCCGGGGGCACAAGGGTTGAT 15 114 0 CCGGGGGCAC 0.821058 -187 CCCGGCTCCGCCGCGCTTGCGATCGCCA 16 9 0 CCGCGCTTGC 0.929297 -209 CCCGGCTCCGCCGCGCTTGCGATCGCCACC 16 66 0 CCGCGCTTGC 0.929297 -152 CCCGGCTCCGCCGCGCTTGCGATCGCCACC 16 123 0 CCGCGCTTGC 0.929297 -95 CCCGGCTCCGCCGCGCTTGCGATCGCCACC 16 180 0 CCGCGCTTGC 0.929297 -38 TCGCCGTATTCGCCGCTGATGGCGATCACC 17 145 1 CGCCGCTGAT 0.911297 -112 CCTTTCCTTCCCCCGCTGATCACGTCATAC 17 231 0 CCCCGCTGAT 0.831926 -26 TCCGGCGAGACGGCTCGCCGG 18 2 1 CCGGCGAGAC 0.621781 -149 GATCGGTGGCCGCCCGTCGTGGCGTGCCGA 18 119 0 CGCCCGTCGT 0.575206 -32 GCGTTAGGGTCCGCGCTCGCGGGAAGAAGG 19 65 1 CCGCGCTCGC 0.979322 -25 CCCGGTGCGGCGGGGCTCATGTTCCCCATA 21 60 0 CGGGGCTCAT 0.792374 -241 CGCGTCCCTACCGCGGACATTGCGCTGGCT 21 125 0 CCGCGGACAT 0.568212 -176 CTTTGAGAAGCCGGGCGCTCACCCCACCGA 21 165 0 CCGGGCGCTC 0.696987 -136 CGGCCGAAGGCGGCGGGTGTCACTGATCTA 21 219 1 CGGCGGGTGT 0.776683 -82 ATCCCGTCAGCCGGCCACACCCACCGGGCT 22 18 1 CCGGCCACAC 0.492319 -159 CCGGGCTTCACGGCGCTGTCTGGCCCCAAC 22 41 1 CGGCGCTGTC 0.974434 -136 GCGTTACGCTCGGCGCTTACGCTGGGCAGC 24 11 0 CGGCGCTTAC 0.925622 -186 CCCGCCGTTTCGGCGCGCATCGTCGCCAGG 24 106 1 CGGCGCGCAT 0.903163 -91 CCCGCCGTTTCGGCGCGCATCGTCGCCAGG 24 162 1 CGGCGCGCAT 0.903163 -35 CCATAGGTCGCGCCGGGGACGGGCAGCGGG 25 49 1 CGCCGGGGAC 0.962458 -252 CGTCGCCGGCCGCCGCAGTCACACTCAATT 26 35 0 CGCCGCAGTC 0.859934 -39 CCGGGTTTGGCGGCCGACGTCGGCG 28 6 0 CGGCCGACGT 0.618889 -262 CGATATCCATCGCGGCGCGCAGGATCTGCG 28 37 0 CGCGGCGCGC 0.925819 -231 AAGGGGCTCTCGGGGCTGTCCATCGGCGAG 28 75 1 CGGGGCTGTC 0.93485 -193 ATGAGCAAGTCGGGCCTGTTCCGGCATTTC 28 123 1 CGGGCCTGTT 0.467985 -145 ACGGCGGCCTCGACGGTCGCCAGCTGCAGC 28 167 0 CGACGGTCGC 0.784469 -101 GTCGTGGCTCCCGCGATGGCAGCGCCGCCC 28 216 1 CCGCGATGGC 0.837395 -52 ATGGCAGCGCCGCCCGGGGTGGACCGGGTG 28 231 1 CGCCCGGGGT 0.775038 -37 ATTGACAGCACGCCCCAGGCGGACCATCGT 29 45 1 CGCCCCAGGC 0.922346 -58 CGGCGGCGGCTTTCATTAAG 29 93 0 CGGCGGCGGC 0.953704 -10 GGCGGCGGCGCCGGTAACGGCGCGC 30 6 1 CGGCGCCGGT 0.883657 -204 CGAAACGAACCGGCGCGCGCCGTTACCGGC 30 20 0 CGGCGCGCGC 0.989062 -190 CGCAACATGTGCGCGCTGACGATCGGGTTG 30 66 1 GCGCGCTGAC 0.390059 -144 AAAGCCCTGCCGACGGTGTCGCAGGTCTGG 30 152 1 CGACGGTGTC 0.585241 -58 CCGGACTCACCGGGGCGGTTCACCCAGCCG 31 31 1 CGGGGCGGTT 0.749 -270 GCCGGGCTAGCCGCGCGCTTCAGTGGTACA 31 172 1 CCGCGCGCTT 0.58 -129 GCCGCTGCCCGCGCAGGTAGTCGCAGCC 32 9 1 CCGCGCAGGT 0.928635 -77 CTGTACCCATCCGCGATGGCTGCGACTACC 32 26 0 CCGCGATGGC 0.837395 -60 TCCGGTACGCCGGCTCAGGCCCGGATCAGT 33 16 1 CGGCTCAGGC 0.518236 -104 CTTTCCTACCCCGCCCTTGCCGACAAAGAG 33 46 0 CCGCCCTTGC 0.780934 -74 GCATCACATACCGCGGTGGCGGACGCCAGA 33 81 0 CCGCGGTGGC 0.9877 -39 TATGTGATGCCGGGGCCGGCCAGCGAGTG 33 101 1 CGGGGCCGGC 0.926746 -19 ACCGTTTCTCCCCGGGAGATCGGGAGCTCC 34 37 1 CCCGGGAGAT 0.334269 -68 CGCAGATGATCGGGGCCGACCCGCTTGCGG 34 67 1 CGGGGCCGAC 0.852314 -38 CTGCGCCCGTCCGCCCTGTCGGGGGCAGAC 36 15 0 CCGCCCTGTC 0.83279 -106 GAACTCGACCCCGCGCAGGTGCAGCTGCGC 36 39 0 CCGCGCAGGT 0.928635 -82 TGAGGAGGAGCGGCGCAGATGAGT 37 5 0 CGGCGCAGAT 0.924929 -296 AGATGAGTCGCGCCGGTGACGATGCAGAGC 37 42 0 CGCCGGTGAC 0.965355 -259 TGAGCAGGAGCGGCGCAGATGAGTCGCGCC 37 58 0 CGGCGCAGAT 0.924929 -243 AGATGAGTCGCGCCGGTGACGATGCAGAGC 37 95 0 CGCCGGTGAC 0.965355 -206 TGAGCAGGAGCGGCGCAGATGAGTCGCGCC 37 111 0 CGGCGCAGAT 0.924929 -190 AGATGAGTCGCGCCGGTGACGATGCAGAGC 37 148 0 CGCCGGTGAC 0.965355 -153 TGAGCAGGAGCGGCGCAGATGAGTCGCGCC 37 164 0 CGGCGCAGAT 0.924929 -137 AGATGAGTCGCGCCGGTGACGATGCAGAGC 37 201 0 CGCCGGTGAC 0.965355 -100 TGAGGAGGAGCGGCGCAGATGAGTCGCGCC 37 217 0 CGGCGCAGAT 0.924929 -84 TGACCATGCGCGCCGGTGACGATGCAGAGC 37 254 0 CGCCGGTGAC 0.965355 -47 TACGGTGTAGCGTCGCTGACCATGCGCGCC 37 270 0 CGTCGCTGAC 0.866043 -31 ACCGCCGCGTTGACCTGTTTCGGC 38 120 0 CCGCGTTGAC 0.557347 -14 GAGGTTTCGTCGGTCGTGGCCGCGGCATCG 39 42 1 CGGTCGTGGC 0.598247 -187 CTGTGGTGCGTGGCGGTGGCGGGTTTGAAG 39 142 1 TGGCGGTGGC 0.679715 -87 GAGGTCTGATCGGCGGTGACAGAGTTTGTG 39 175 1 CGGCGGTGAC 0.987018 -54 GGCCACGACCCCGCGCGGGTTGGGCAACTC 39 209 0 CCGCGCGGGT 0.964529 -20 TCGAGTCGTGCCGGGGGCACTGTGGAAATA 40 39 0 CCGGGGGCAC 0.821058 -262 GCGACGCTGGCGGCGGTCGCCGCCGACGGG 41 36 0 CGGCGGTCGC 0.983679 -265 CCGCCGCCAGCGTCGCTGACCGCTCCCCGT 41 50 1 CGTCGCTGAC 0.866043 -251 GCGATCGGTACCGGGCAGGTGACCGGGTGC 41 169 0 CCGGGCAGGT 0.830482 -132 ACCATGCTATCGGGGCGCACGTCGACGACC 41 240 0 CGGGGCGCAC 0.939522 -61 AACGAGGGGCCGGCCGAGGCCAGGCCCGTC 43 109 0 CGGCCGAGGC 0.95208 -126 CTAACGCACCCCGCCCACGCCGGAGCGCGG 43 148 1 CCGCCCACGC 0.849527 -87 CCTGGTGGTGCCGGGATGGCACTGTCGTGC 43 205 1 CCGGGATGGC 0.659728 -30 TCGGTCGTGCCGGCCCGTGCGAGGC 44 6 0 CGGCCCGTGC 0.87192 -72 CCGCGTGGATCGACGCTGGCAGGATGACTT 45 12 0 CGACGCTGGC 0.942589 -107 CGTCGATCCACGCGGCACACTTCGACGGCA 45 27 1 CGCGGCACAC 0.731167 -92 GCCCCGGCCACGACCGTGGCGGCAATGCCG 45 52 0 CGACCGTGGC 0.731892 -67 CTAATCTGCGCCGCGGTTGCCGTCGGGACC 45 90 0 CCGCGGTTGC 0.889596 -29 TTGGCCCGGTCCGGGCTGGATGTTTGGAGG 46 17 0 CCGGGCTGGA 0.459311 -198 AACGGCCCGCCGGCGGAGTCTGGCATTTAC 46 114 0 CGGCGGAGTC 0.911266 -101 CCAACGCTTTCCGCCCGCGCGAATCGGGGT 46 149 1 CCGCCCGCGC 0.921389 -66 CCCGCCGGACAGCACGCGTT 46 205 0 CCCGCCGGAC 0.672919 -10 AAAGCTTAGACGGCGGGGGCTCGGGTGGTA 50 16 1 CGGCGGGGGC 0.993521 -187 TGGTACCCATCGCGCCGCGCTGCGGTGCGG 50 41 1 CGCGCCGCGC 0.77195 -162 CGCCGCGCTGCGGTGCGGGTCATCGTCAAG 50 53 1 CGGTGCGGGT 0.650653 -150 CACGCCGCTGCGCGGCGTGCATCGTCGCCG 50 109 1 CGCGGCGTGC 0.775947 -94 CACGCCGCTGCGCGGCGTGCATCGTCGCCG 50 167 1 CGCGGCGTGC 0.775947 -36 TTTGCGCTCCTCGCGCTGGCGTCGTTTCAA 52 82 0 TCGCGCTGGC 0.625168 -169 CAGTTGTGGGCCTGGCTGACGGATGGAGCC 54 83 1 CCTGGCTGAC 0.53974 -218 CGCGCCCGGTCGCGGCACGTCCAGCACGAC 54 189 0 CGCGGCACGT 0.574033 -112 CGTGCCGCGACCGGGCGCGCCCAATCCAGC 54 200 1 CCGGGCGCGC 0.942417 -101 AGGCAGGCTTCCGCGCTGGATTGGGCGCGC 54 214 0 CCGCGCTGGA 0.692911 -87 CGCCTGTTGACGGCGCGGACAATGCCGTAC 54 247 1 CGGCGCGGAC 0.991313 -54 GTGACTTCTCCGCCCCGCACCGGTACGGCA 54 269 0 CGCCCCGCAC 0.803982 -32 ********** Masking position 1 Map Score: 172.998 Number of sites scoring better than the average of aligned sites = 61399 Number in coding regions = 57882 Number in noncoding regions = 3517 Number of orfs with sites within 600 bp upstream = 1357 Fraction of orfs with sites within 600 bp upstream = 0.217957 Motif number 3 CATGGTTGCGCTGCTGATCGTCGGATAGCG 1 26 0 CTGCTGATCG 0.645559 -76 CCGCACAGCGGCGGTGATCGCGTACGTCCA 1 65 0 GCGGTGATCG 0.817382 -37 ATCGTCGCCGGCGGTCATGGCGTCACCCTA 5 47 0 GCGGTCATGG 0.799377 -52 CATCGCTGCGCTCGGCATCGTCGCCGGCGG 5 63 0 CTCGGCATCG 0.937601 -36 TGCGCCGCTCCTCCTCATCGCTGCGCTCGG 5 78 0 CTCCTCATCG 0.769115 -21 GGGTTCGATTCCCGTCATCGGCTCCGATGT 7 28 1 CCCGTCATCG 0.902014 -273 GCCTTGCCGCCGGGCCACCGACGTTCAGCA 7 80 0 CGGGCCACCG 0.875044 -221 GGTGCATGGGCCGGCCATCGTTTTGGGCCT 7 115 0 CCGGCCATCG 0.955368 -186 TCGGCGACGACGGTGCATGGGCCGGCCATC 7 126 0 CGGTGCATGG 0.585902 -175 CCACGCCGGGGGCAGCACCGCTCTGTCGGC 7 220 0 GGCAGCACCG 0.722406 -81 GCCGCAGGTTGGGTGCACGGCACTAGGATC 8 18 0 GGGTGCACGG 0.631872 -43 GAAGTGATTCCTCCGGATCGGGGATGAAAC 9 14 1 CTCCGGATCG 0.828654 -280 GGATGAAACGGGGGTCACCGGGTGACGGCA 9 35 1 GGGGTCACCG 0.857149 -259 GGCACTGCGCCCGGCCAGCGTAAGTAGCGG 9 68 0 CCGGCCAGCG 0.703664 -226 GGGCGCAGTGCCCGCGACGGACGGCTCAAG 9 86 1 CCCGCGACGG 0.878362 -208 GCCACTCGCTGCGACGACGGGCCTGGCCTC 9 127 1 GCGACGACGG 0.524266 -167 CGACGGGCCTGGCCTCACCGTCCCGACCTA 9 141 1 GGCCTCACCG 0.779354 -153 AACGTTGGCACTCGCGACCGGTGAGTGCTA 9 169 0 CTCGCGACCG 0.905434 -125 GCTTCTTGCACTCGGCATAGGCGAGTGCTA 9 204 0 CTCGGCATAG 0.150327 -90 GTGCAAGAAGCCCCGCACCGGGTCATGCCC 9 223 1 CCCCGCACCG 0.94969 -71 GGCATGGGCGCCGGGCATGGCCACGCCCGC 12 91 0 CCGGGCATGG 0.922017 -191 AAGCTGGTATCCGGGCATGGGCGCCGGGCA 12 104 0 CCGGGCATGG 0.922017 -178 TCCTGCACCTGCCACCACGGTCAAGCTGGT 12 126 0 GCCACCACGG 0.668401 -156 TTCTCCGACTCTCATCATCGATTGGACACT 14 25 1 CTCATCATCG 0.480344 -177 CCGCTACACCGTCCTGACCGATGCACCAGG 14 92 1 GTCCTGACCG 0.682561 -110 ACTCTGGCGGGGCCCCATGGCGCAACGTGT 15 206 0 GGCCCCATGG 0.751317 -95 CGGCTACCCACTGACCACCGCAACGGATTC 15 245 1 CTGACCACCG 0.740862 -56 GGTGCGGCGGGTCGGCACGGTTTGGATTGG 16 37 1 GTCGGCACGG 0.896202 -181 TTTGGATTGGGTGGCGATCGCAAGCGCGGC 16 57 1 GTGGCGATCG 0.865212 -161 GGTGCGGCGGGTCGGCACGGTTTGGATTGG 16 94 1 GTCGGCACGG 0.896202 -124 TTTGGATTGGGTGGCGATCGCAAGCGCGGC 16 114 1 GTGGCGATCG 0.865212 -104 GGTGCGGCGGGTCGGCACGGTTTGGATTGG 16 151 1 GTCGGCACGG 0.896202 -67 TTTGGATTGGGTGGCGATCGCAAGCGCGGC 16 171 1 GTGGCGATCG 0.865212 -47 GCCGTATTCGCCGCTGATGGCGATCACCGT 17 147 1 CCGCTGATGG 0.590514 -110 TTCTCGGCACGCCACGACGGGCGGCCACCG 18 116 1 GCCACGACGG 0.524286 -35 GCCACGACGGGCGGCCACCGATCACAGAGG 18 126 1 GCGGCCACCG 0.961984 -25 ACATGAGCCCCGCCGCACCGGGCCGTTTCC 21 68 1 CGCCGCACCG 0.912284 -233 TGGGTGTGGCCGGCTGACGGGATGGTTGTG 22 11 0 CGGCTGACGG 0.51383 -166 ACACCCACCGGGCTTCACGGCGCTGTCTGG 22 34 1 GGCTTCACGG 0.401489 -143 GAGCCTCCTTGCGGCCATGGGCCGCCACGG 22 151 1 GCGGCCATGG 0.90287 -26 GCGGCCATGGGCCGCCACGGGTCTCG 22 161 1 GCCGCCACGG 0.925028 -16 GCTGCCCAGCGTAAGCGCCGA 24 2 1 CTGCCCAGCG 0.494457 -195 CGCCGTTTCGGCGCGCATCGTCGCCAGGCT 24 108 1 GCGCGCATCG 0.927512 -89 CGCCGTTTCGGCGCGCATCGTCGCCAGGCT 24 164 1 GCGCGCATCG 0.927512 -33 ATAGGTCGCGCCGGGGACGGGCAGCGGGTC 25 51 1 CCGGGGACGG 0.813508 -250 ACGTGTGTGGCGCCCCACGGTGTTTTCGTG 25 166 0 CGCCCCACGG 0.817532 -135 ACTGCGGCGGCCGGCGACGGTAGCGGCATG 26 46 1 CCGGCGACGG 0.83468 -28 GATCCTGCGCGCCGCGATGGATATCGCCTC 28 41 1 GCCGCGATGG 0.835592 -227 CCCCGAGAGCCCCTTCACCGAGGCGATATC 28 60 0 CCCTTCACCG 0.736924 -208 GCTCTCGGGGCTGTCCATCGGCGAGCTTGC 28 80 1 CTGTCCATCG 0.751932 -188 GCAGCTGCAGCTGGCGACCGTCGAGGCCGC 28 164 1 CTGGCGACCG 0.904749 -104 GAGCCACGACCTCGGCTTCGAACACGCTCA 28 196 0 CTCGGCTTCG 0.16542 -72 GGTCGTGGCTCCCGCGATGGCAGCGCCGCC 28 215 1 CCCGCGATGG 0.851066 -53 GCGCCGCCCGGGGTGGACCGGGTGCGCGCC 28 237 1 GGGTGGACCG 0.662356 -31 CCCGGGCCCCGAGCGAGCGGT 29 2 1 CCGGGCCCCG 0.44952 -101 ACGCCCCAGGCGGACCATCGTTAAACACGA 29 54 1 CGGACCATCG 0.659425 -49 CATGTGCGCGCTGACGATCGGGTTGGCGGA 30 71 1 CTGACGATCG 0.541086 -139 ATCGAAAGCCCTGCCGACGGTGTCGCAGGT 30 148 1 CTGCCGACGG 0.732923 -62 ACCCAGCCGGGTCGTCACCGGCTGTCGGCG 31 52 1 GTCGTCACCG 0.869804 -249 GACTACCTGCGCGGGCAGCGGC 32 3 0 GCGGGCAGCG 0.732245 -83 GATGCCGGGGCCGGCCAGCGAGTG 33 106 1 CCGGCCAGCG 0.703664 -14 GCCCCCGACAGGGCGGACGGGCGCAGCTGC 36 19 1 GGGCGGACGG 0.713924 -102 TGCGCCGCTCCTCCTCATCGCTTCGCTCTG 37 18 1 CTCCTCATCG 0.769115 -283 CATCGCTTCGCTCTGCATCGTCACCGGCGC 37 33 1 CTCTGCATCG 0.775333 -268 TGCGCCGCTCCTGCTCATCGCTTCGCTCTG 37 71 1 CTGCTCATCG 0.769115 -230 CATCGCTTCGCTCTGCATCGTCACCGGCGC 37 86 1 CTCTGCATCG 0.775333 -215 TGCGCCGCTCCTGCTCATCGCTTCGCTCTG 37 124 1 CTGCTCATCG 0.769115 -177 CATCGCTTCGCTCTGCATCGTCACCGGCGC 37 139 1 CTCTGCATCG 0.775333 -162 TGCGCCGCTCCTGCTCATCGCTTCGCTCTG 37 177 1 CTGCTCATCG 0.769115 -124 CATCGCTTCGCTCTGCATCGTCACCGGCGC 37 192 1 CTCTGCATCG 0.775333 -109 TGCGCCGCTCCTCCTCATCGCTTCGCTCTG 37 230 1 CTCCTCATCG 0.769115 -71 CATCGCTTCGCTCTGCATCGTCACCGGCGC 37 245 1 CTCTGCATCG 0.775333 -56 ATCGTCACCGGCGCGCATGGTCAGCGACGC 37 261 1 GCGCGCATGG 0.861647 -40 CGATGCCGCGGCCACGACCGACGAAACCTC 39 42 0 GCCACGACCG 0.693657 -187 CGGTCGTGGCCGCGGCATCGGTGCTGCGGG 39 52 1 CGCGGCATCG 0.930965 -177 GTGGATCATGGCCCGCATCGGCTTTCACCA 39 81 1 GCCCGCATCG 0.927512 -148 CTTTCACCACCGCGTCATCGCGACTAGCGT 39 102 1 CGCGTCATCG 0.835597 -127 CTGCTTCAAACCCGCCACCGCCACGCACCA 39 145 0 CCCGCCACCG 0.962531 -84 GAAATAGCAGGTCAGCATGGTGGCGTGGCT 40 15 0 GTCAGCATGG 0.515117 -286 ATAAACTGACCTGCGCATCGCCTCCGTAGC 40 113 0 CTGCGCATCG 0.898426 -188 CGGCCCGTCGGCGGCGACCGCCGCCAGCGT 41 33 1 GCGGCGACCG 0.932656 -268 GATAGAGCGTCGCTGGACGGGGAGCGGTCA 41 66 0 CGCTGGACGG 0.407156 -235 AACATCCTTTGGGCTCATCGAGCCGCCGTA 41 137 1 GGGCTCATCG 0.726823 -164 ATCGCCCACACCGGTGATCGAAAACCCATC 41 194 1 CCGGTGATCG 0.83425 -107 CGATAGCATGGTCGCGATCGTTTCGACACG 41 258 1 GTCGCGATCG 0.865212 -43 ATCTCAAGGTGTGAGCATCGCTCGAGCAAC 43 75 0 GTGAGCATCG 0.685795 -160 TCCTGGTGGTGCCGGGATGGCACTGTCGTG 43 204 1 GCCGGGATGG 0.852608 -31 CGCACGGGCCGGCACGACCGAAAACTGCAG 44 15 1 GGCACGACCG 0.555592 -63 GAAGTGTGCCGCGTGGATCGACGCTGGCAG 45 20 0 GCGTGGATCG 0.73188 -99 CGACGGCATTGCCGCCACGGTCGTGGCCGG 45 49 1 GCCGCCACGG 0.925028 -70 GGGACCGTGCCTGGGCCCCGGCCACGACCG 45 66 0 CTGGGCCCCG 0.41474 -53 CGCGGTTGCCGTCGGGACCGTGCCTGGGCC 45 79 0 GTCGGGACCG 0.906533 -40 CAAACATCCAGCCCGGACCGGGCCAAAACC 46 21 1 GCCCGGACCG 0.902795 -194 GCGCGAATCGGGGTCGACGGCTGGCCGAGT 46 165 1 GGGTCGACGG 0.458104 -50 ACCGCAGCGCGGCGCGATGGGTACCACCCG 50 37 0 GGCGCGATGG 0.737268 -166 CGCTGCGGTGCGGGTCATCGTCAAGCTGTG 50 58 1 CGGGTCATCG 0.835596 -145 CCGCTGCGCGGCGTGCATCGTCGCCGAGCT 50 113 1 GCGTGCATCG 0.833118 -90 CCGCTGCGCGGCGTGCATCGTCGCCGAGCT 50 171 1 GCGTGCATCG 0.833118 -32 CCCGCAGTATGTCGTCATCGAGGTCGATCG 52 50 0 GTCGTCATCG 0.834227 -201 TGCTGGACGTGCCGCGACCGGGCGCGCCCA 54 193 1 GCCGCGACCG 0.93271 -108 GCCTCAACGCCTGTTGACGGCGCGGACAAT 54 240 1 CTGTTGACGG 0.314627 -61 GACTTCTCCGCCCCGCACCGGTACGGCATT 54 267 0 CCCCGCACCG 0.94969 -34 ********** Masking position 10 Map Score: 152.449 Number of sites scoring better than the average of aligned sites = 37287 Number in coding regions = 35165 Number in noncoding regions = 2122 Number of orfs with sites within 600 bp upstream = 1104 Fraction of orfs with sites within 600 bp upstream = 0.177321 Motif number 4 GCAACCATGGCCCAGGTCTGGACGTACGCG 1 47 1 CCCAGGTCTG 0.827063 -55 GCTTCGGGGCCGCCGGTTAGGTCTCGG 2 8 0 CGCCGGTTAG 0.822511 -81 AAGCTGAATACGCGGGTTCGATTCCCGTCA 7 15 1 CGCGGGTTCG 0.961999 -286 CTCCCATACGGCGCGGTCGGCGACGACGGT 7 142 0 GCGCGGTCGG 0.660734 -159 AGCTTCGTGCCGCAGGTTGGGTGCACGGCA 8 26 0 CGCAGGTTGG 0.953992 -35 TGGCCACGCCCGCGCGTTGGTGCCCCAACG 12 74 0 CGCGCGTTGG 0.928345 -208 GCGAAAGCTACGCAGGTTCGAATCCTGCAC 12 148 0 CGCAGGTTCG 0.927301 -134 ACCTACACTCAGCCAGTCGGCGTTCCGGCC 13 28 1 AGCCAGTCGG 0.644796 -71 CAACGATGAAAGCAGGTTTGCG 13 87 1 AGCAGGTTTG 0.639306 -12 AGCAGAAGGCCGCAGGTTCGAATCCTGCCG 15 131 0 CGCAGGTTCG 0.927301 -170 GAATCCGTTGCGGTGGTCAGTGGGTAGCCG 15 245 0 CGGTGGTCAG 0.508531 -56 AGCCGGGTGCGGCGGGTCGGCACGGTTTGG 16 32 1 GGCGGGTCGG 0.985277 -186 AGCCGGGTGCGGCGGGTCGGCACGGTTTGG 16 89 1 GGCGGGTCGG 0.985277 -129 AGCCGGGTGCGGCGGGTCGGCACGGTTTGG 16 146 1 GGCGGGTCGG 0.985277 -72 AGCCGGGTGCGGCGGGTCGGCACGC 16 203 1 GGCGGGTCGG 0.985277 -15 CGCAAGGTTGCGGGGGTTTGCTTGCTTCCG 17 13 1 CGGGGGTTTG 0.750276 -244 CGTGCCGAGAACCTGGTCCGGTTCCAACTC 18 97 0 ACCTGGTCCG 0.452818 -54 GTGCACAGTTCGGGCGTCGGTAAGCCAG 19 9 0 CGGGCGTCGG 0.913288 -81 CGGTACAGGACGGGCGTCGGTTCGCGTTAG 19 42 1 CGGGCGTCGG 0.913288 -48 ATTTAACCTGCGCCCGTCCGAAGCGCCCGG 22 93 0 CGCCCGTCCG 0.94874 -84 GGTTTGGCGGCCGACGTCGGCG 28 3 0 CCGACGTCGG 0.388445 -265 AGGATCTGCGCCCGGGTTTGGCGGCCGACG 28 17 0 CCCGGGTTTG 0.719472 -251 GCTGGGCATGAGCAAGTCGGGCCTGTTCCG 28 116 1 AGCAAGTCGG 0.592377 -152 TAACGGCGCGCGCCGGTTCGTTTCGGCTCC 30 25 1 CGCCGGTTCG 0.940946 -185 CCGACGGTGTCGCAGGTCTGGGATTCGTGA 30 161 1 CGCAGGTCTG 0.960114 -49 AGTTGTGCTGAGCTGGTCGGAGGTGCGGG 30 191 1 AGCTGGTCGG 0.871317 -19 GGGTCGTCACCGGCTGTCGGCGATATTGAG 31 60 1 CGGCTGTCGG 0.51969 -241 TTTCCCCGCAAGCGGGTCGGCCCCGATCAT 34 72 0 AGCGGGTCGG 0.97647 -33 AGACCGATATCGCGTGTCCGTTGGTTGGTG 35 96 1 CGCGTGTCCG 0.819628 -70 GGTGCAGCTGCGCCCGTCCGCCCTGTCGGG 36 22 0 CGCCCGTCCG 0.94874 -99 GCGTGGCGGTGGCGGGTTTGAAGCAGGAGG 39 149 1 GGCGGGTTTG 0.85013 -80 GGTTTGAAGCAGGAGGTCTGATCGGCGGTG 39 163 1 AGGAGGTCTG 0.604212 -66 CACGACCCCGCGCGGGTTGGGCAACTCGAC 39 206 0 CGCGGGTTGG 0.976276 -23 CTGTGGAAATAGCAGGTCAGCATGGTGGCG 40 20 0 AGCAGGTCAG 0.789082 -281 ATCCCTAGGTCGCACGTTCGAGTCGTGCCG 40 56 0 CGCACGTTCG 0.800233 -245 GGAGGCGATGCGCAGGTCAGTTTATCTAAC 40 118 1 CGCAGGTCAG 0.932109 -183 CTACGGTAGCGGCCCGTCGGCGGCGACCGC 41 24 1 GGCCCGTCGG 0.929877 -277 AGCTCGTGGGAGCCCGTCTGCCTGACCCGG 44 43 1 AGCCCGTCTG 0.720638 -35 TGCAGAGGCTACCGGGTCAGGCAGACGGGC 44 54 0 ACCGGGTCAG 0.595978 -24 CTGGGTTTTGGCCCGGTCCGGGCTGGATGT 46 24 0 GCCCGGTCCG 0.83734 -191 CCACCGCAGCGGCGGGTCCGACGCCG 51 7 0 GGCGGGTCCG 0.976285 -43 CACACGGGGCCGCAAGTCGGCAGTCGACCA 52 187 0 CGCAAGTCGG 0.842087 -64 GAAGTCACTAGGCTGGTCTG 54 291 1 GGCTGGTCTG 0.774022 -10 ********** Masking position 7 Map Score: 68.1326 Number of sites scoring better than the average of aligned sites = 7771 Number in coding regions = 7120 Number in noncoding regions = 651 Number of orfs with sites within 600 bp upstream = 515 Fraction of orfs with sites within 600 bp upstream = 0.0827176 Motif number 5 GCTATCCGACGATCAGCAGCGCAACCATGG 1 27 1 GATCAGCAGC 0.737512 -75 GGGAGCACAGGATGAGCGCC 3 33 1 GATGAGCGCC 0.909738 -10 AGGTCAGTCGGATGCGCTCG 4 1 0 GATGCGCTCG 0.616975 -94 CGCCGGCGACGATGCCGAGCGCAGCGATGA 5 64 1 GATGCCGAGC 0.68092 -35 CGAGCGCAGCGATGAGGAGGAGCGGCGCAT 5 79 1 GATGAGGAGG 0.873927 -20 GAAAGCGGCTGGTGCACAGGAACCGTCGCC 7 193 1 GGTGCACAGG 0.628214 -108 ATACTGACCTGATGAGCGACGGTGGCGCAC 7 276 1 GATGAGCGAC 0.333266 -25 CCGCAGGTTGGGTGCACGGCACTAGGATCG 8 17 0 GGTGCACGGC 0.765253 -44 TTTCATCCCCGATCCGGAGGAATCACTTCG 9 13 0 GATCCGGAGG 0.82988 -281 GGCATGACCCGGTGCGGGGCTTCTTGCACT 9 222 0 GGTGCGGGGC 0.900176 -72 TCCGCAAGGTTGCGGGGGTTTGCTTGCT 17 9 1 GTTGCGGGGG 0.510291 -248 CGTATGACGTGATCAGCGGGGGAAGGAAAG 17 230 1 GATCAGCGGG 0.744251 -27 CAAACACCGAGATGCGTGCGGACATTCCCG 18 29 0 GATGCGTGCG 0.422718 -122 GCCTGGCGACGATGCGCGCCGAAACGGCGG 24 107 0 GATGCGCGCC 0.968673 -90 GAAACGGCGGGCTGAGGAGCCGGGCAATCG 24 143 0 GCTGAGGAGC 0.323187 -54 GCCTGGCGACGATGCGCGCCGAAACGGCGG 24 163 0 GATGCGCGCC 0.968673 -34 CAAGCTCGCCGATGGACAGCCCCGAGAGCC 28 79 0 GATGGACAGC 0.298517 -189 GGGTGGACCGGGTGCGCGCCCTCATGCATG 28 247 1 GGTGCGCGCC 0.844093 -21 CTGTACCACTGAAGCGCGCGGCTAGCCCGG 31 173 0 GAAGCGCGCG 0.421472 -128 CAAAGAGACTGATCCGGGCCTGAGCCGGCG 33 23 0 GATCCGGGCC 0.84382 -97 CGCGGTATGTGATGCCGGGGCCGGCCAGCG 33 96 1 GATGCCGGGG 0.688529 -24 GATCAACACCTCACTTGACC 35 1 1 GATCAACACC 0.303687 -165 AGAGCGAAGCGATGAGGAGGAGCGGCGCAG 37 17 0 GATGAGGAGG 0.873927 -284 CGCCGGTGACGATGCAGAGCGAAGCGATGA 37 32 0 GATGCAGAGC 0.888279 -269 AGAGCGAAGCGATGAGCAGGAGCGGCGCAG 37 70 0 GATGAGCAGG 0.900981 -231 CGCCGGTGACGATGCAGAGCGAAGCGATGA 37 85 0 GATGCAGAGC 0.888279 -216 AGAGCGAAGCGATGAGCAGGAGCGGCGCAG 37 123 0 GATGAGCAGG 0.900981 -178 CGCCGGTGACGATGCAGAGCGAAGCGATGA 37 138 0 GATGCAGAGC 0.888279 -163 AGAGCGAAGCGATGAGCAGGAGCGGCGCAG 37 176 0 GATGAGCAGG 0.900981 -125 CGCCGGTGACGATGCAGAGCGAAGCGATGA 37 191 0 GATGCAGAGC 0.888279 -110 AGAGCGAAGCGATGAGGAGGAGCGGCGCAG 37 229 0 GATGAGGAGG 0.873927 -72 CGCCGGTGACGATGCAGAGCGAAGCGATGA 37 244 0 GATGCAGAGC 0.888279 -57 CGTCGCTGACCATGCGCGCCGGTGACGATG 37 260 0 CATGCGCGCC 0.457653 -41 GTGTCGACTCGATCAGCTGGAGGACTCAGG 38 15 0 GATCAGCTGG 0.169481 -119 GGTGAAAGCCGATGCGGGCCATGATCCACC 39 80 0 GATGCGGGCC 0.959722 -149 CTACGGAGGCGATGCGCAGGTCAGTTTATC 40 114 1 GATGCGCAGG 0.965534 -187 TGCCAGCGTCGATCCACGCGGCACACTTCG 45 21 1 GATCCACGCG 0.584174 -98 CGTCGACCCCGATTCGCGCGGGCGGAAAGC 46 154 0 GATTCGCGCG 0.337611 -61 TGAGGCGCAGCGCTAGGCTTT 47 2 1 GAGGCGCAGC 0.829415 -68 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCA 50 90 0 GAGGAGGAGC 0.543785 -113 GCTCGGCGACGATGCACGCCGCGCAGCGGC 50 112 0 GATGCACGCC 0.894425 -91 GCAGCGGCGTGAGGAGGAGCCGAGCAGTCC 50 148 0 GAGGAGGAGC 0.543785 -55 GCTCGGCGACGATGCACGCCGCGCAGCGGC 50 170 0 GATGCACGCC 0.894425 -33 TTGTCGTCAAGATCCACACGGGGCCGCAAG 52 201 0 GATCCACACG 0.498516 -50 ATGCCGTACCGGTGCGGGGCGGAGAAGTCA 54 268 1 GGTGCGGGGC 0.900176 -33 ********** Masking position 1 Map Score: 54.7563 Number of sites scoring better than the average of aligned sites = 7736 Number in coding regions = 7171 Number in noncoding regions = 565 Number of orfs with sites within 600 bp upstream = 427 Fraction of orfs with sites within 600 bp upstream = 0.0685834 Motif number 6 TCTCGTTTCGCGTTCGGCTTGGGTAGGGTGA 5 24 1 CGTTCGGCTG 0.573915 -75 CTGGCACACCCTACGGCCCGCTAGGCTATC 6 16 0 CCTACGGCCG 0.853724 -20 CCCGCCTTGCCGCCGGGCCACCGACGTTCAG 7 82 0 CGCCGGGCCC 0.767245 -219 GGGGCAGCACCGCTCTGTCGGCGACGGTTCC 7 211 0 CGCTCTGTCG 0.359912 -90 AGCGGTGCTGCCCCCGGCGTGGACGCCCCCG 7 228 1 CCCCCGGCGG 0.936352 -73 GGCGTGGACGCCCCCGGCGGCCGAGGCTATG 7 243 1 CCCCCGGCGC 0.921834 -58 GCGGGCACTGCGCCCGGCCAGCGTAAGTAGC 9 70 0 CGCCCGGCCG 0.993495 -224 GTAGCCAGGACATCCAGCCAGCCCCTCCAGA 11 20 0 CATCCAGCCG 0.869035 -58 CCCAACGTCGCCTACGGTCGGTAGACAGCGG 12 50 0 CCTACGGTCG 0.406442 -232 GCCGCTCGGGCAACCTGCCGCCTAGCAGGGT 12 204 1 CAACCTGCCC 0.610219 -78 CGTTGACCTACACTCAGCCAGTCGGCGTTCC 13 23 1 CACTCAGCCG 0.668324 -76 GACTGGCTTGCCTCCTGCCGCGACCATCCGA 14 169 1 CCTCCTGCCC 0.943834 -33 AACCCTTGTGCCCCCGGCAGGATTCGAACCT 15 117 1 CCCCCGGCAG 0.931642 -184 GAACCTGCGGCCTTCTGCTCCGGAGGCAGAC 15 142 1 CCTTCTGCTC 0.284627 -159 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 16 20 0 CACCCGGCTC 0.954568 -198 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 16 77 0 CACCCGGCTC 0.954568 -141 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 16 134 0 CACCCGGCTC 0.954568 -84 CGACCCGCCGCACCCGGCTCCGCCGCGCTTG 16 191 0 CACCCGGCTC 0.954568 -27 GGTTTGCTTGCTTCCGGCCAGGAAGCGGGCT 17 27 1 CTTCCGGCCG 0.789347 -230 CGCGAACCGACGCCCGTCCTGTACCGCTGGT 19 37 0 CGCCCGTCCG 0.739523 -53 GTGGGGTGAGCGCCCGGCTTCTCAAAGCGAG 21 168 1 CGCCCGGCTC 0.962436 -133 ACACCCGCCGCCTTCGGCCGGTAAGAGTCCC 21 208 0 CCTTCGGCCG 0.895252 -93 ACCATCCCGTCAGCCGGCCACACCCACCGGG 22 15 1 CAGCCGGCCC 0.927071 -162 TAGGGGTGCCCCCACAGCCCGCCGTTTCGGC 24 89 1 CCCACAGCCG 0.689223 -108 GCGCACACGACCCGCTGCCCGTCCCCGGCGC 25 58 0 CCCGCTGCCG 0.657529 -243 GTGTGCGCGCCCTGTCGGTAGG 27 8 1 CGCCCTGTCG 0.832458 -15 CATGCCCAGCCGCCCGGCAAGCTCGCCGATG 28 95 0 CGCCCGGCAG 0.911211 -173 CCCGCACCTCCGACCAGCTCAGCACAA 30 193 0 CCTCCGACCG 0.584137 -17 CGGGGCGGTTCACCCAGCCGGGTCGTCACCG 31 41 1 CACCCAGCCG 0.946763 -260 GTCCGGCTTGCCCACGGCCTCGGGTATGTGA 35 135 1 CCCACGGCCC 0.926258 -31 TGCGCCCGTCCGCCCTGTCGGGGGCAGACCA 36 13 0 CGCCCTGTCG 0.832458 -108 GCTAGGCCCACAACCTGCTTCAGCAACGACC 36 85 1 CAACCTGCTC 0.246809 -36 GCCGATCAGACCTCCTGCTTCAAACCCGCCA 39 158 0 CCTCCTGCTC 0.778633 -71 TTCCACAGTGCCCCCGGCACGACTCGAACGT 40 42 1 CCCCCGGCAG 0.931644 -259 CCGTCGTCGACGTCCTGCTGGGTAGCCAGGT 41 102 1 CGTCCTGCTG 0.767656 -199 CGCCGTAAAGCACCCGGTCACCTGCCCGGTA 41 160 1 CACCCGGTCC 0.921731 -141 ATCGAAAACCCATCCGGTCACTCGGCTTACG 41 210 1 CATCCGGTCC 0.814362 -91 GGCCTGGCCTCGGCCGGCCCCTCGTTGTTGC 43 113 1 CGGCCGGCCC 0.939399 -122 CGGCATCTCACATCCTGCCTCAATAGCCGCG 43 173 0 CATCCTGCCC 0.912096 -62 GAAGTCATCCTGCCAGCGTCGATCCA 45 6 1 CATCCTGCCG 0.928291 -113 CCGTGCCTGGGCCCCGGCCACGACCGTGGCG 45 61 0 GCCCCGGCCC 0.814058 -58 CTCCTCCAAACATCCAGCCCGGACCGGGCCA 46 15 1 CATCCAGCCG 0.868984 -200 ACCAGGCCTGCCGCCAGCCTGATCGAGGGCT 46 70 0 CCGCCAGCCG 0.784515 -145 TCGACGGTAGCACTCGGCCAGCCGTCGACCC 46 175 0 CACTCGGCCG 0.934066 -40 GGATTGGGCGCGCCCGGTCGCGGCACGTCCA 54 196 0 CGCCCGGTCC 0.934898 -105 ********* * Masking position 5 Map Score: 68.1721 Number of sites scoring better than the average of aligned sites = 9357 Number in coding regions = 8658 Number in noncoding regions = 699 Number of orfs with sites within 600 bp upstream = 519 Fraction of orfs with sites within 600 bp upstream = 0.0833601 Motif number 7 TGCCGAGCGCAGCGATGAGGAGGAGCGGCGCAT 5 76 1 AGCGGGGAGG 0.850909 -23 TCGGTGGCCCGGCGGCAAGGCGGGGAAGGCCCA 7 89 1 GGCGAGGCGG 0.786547 -212 TACTTACGCTGGCCGGGCGCAGTGCCCGCGACG 9 72 1 GGCCGGCAGT 0.662756 -222 TCTTGCACTCGGCATAGGCGAGTGCTAAGAATA 9 198 0 GGCAGCGAGT 0.862446 -96 TCGCGGCGATCTGGAGGGGCTGGCTGG 11 5 1 GGCGCGGAGG 0.812481 -73 ACCGACCGTAGGCGACGTTGGGGCACCAACGCG 12 59 1 GGCGGTGGGG 0.979901 -223 GTAGGTCAACGGCGCTAGGGCGT 13 1 0 GGCGAGGCGT 0.768362 -98 TTGCGGATACGGTCTCGATGAGGCAATATCGGA 14 57 0 GGTCGTGAGG 0.302846 -145 TCGCAAGCGCGGCGGAGCCGGGTGCGGCGGGTC 16 17 1 GGCGGCGGGT 0.977808 -201 TCGCAAGCGCGGCGGAGCCGGGTGCGGCGGGTC 16 74 1 GGCGGCGGGT 0.977808 -144 TCGCAAGCGCGGCGGAGCCGGGTGCGGCGGGTC 16 131 1 GGCGGCGGGT 0.977808 -87 TCGCAAGCGCGGCGGAGCCGGGTGCGGCGGGTC 16 188 1 GGCGGCGGGT 0.977808 -30 GGCGGCCCATGGCCGCAAGGAGGCTCCTCGCGA 22 144 0 GGCCAGGAGG 0.844668 -33 GGGTAGTGACGGTGTCGGTGGGTTGTGGCGTGA 25 200 0 GGTGGTGGGT 0.631943 -101 CGACGGTAGCGGCATGATGGAGTG 26 60 1 GGCAAGGAGT 0.753596 -14 CCGGCATTTCGGCGCCAAGGAGCAGCTGCAGCT 28 143 1 GGCGAGGAGC 0.643168 -125 AGCCGGTGACGACCCGGCTGGGTGAACCGCCCC 31 42 0 GACCGTGGGT 0.288664 -259 ACCGGCTGTCGGCGATATTGAGTCCGGTTTGAG 31 68 1 GGCGATGAGT 0.907653 -233 GGCCAAGTGGGGCACAACTGGGGCTCAAACCGG 31 91 0 GGCAATGGGG 0.625913 -210 CCATTTGCCCGGCGACATGCGGTTTTCTGAGGT 31 135 1 GGCGAGCGGT 0.667258 -166 CCAGTTATGGGGCAAAGTGGGGGATTGTGGGGT 31 229 1 GGCAGGGGGG 0.93816 -72 ATCCGGTGTGGGCGAGAGGGAGGGCC 32 70 1 GGCGAGGAGG 0.958346 -16 TCTCTTTGTCGGCAAGGGCGGGGTAGGAAAGTC 33 45 1 GGCAGCGGGG 0.878463 -75 GGTCAAGGTTGGCACGAGGGAGTACCGTTTCTC 34 14 1 GGCAAGGAGT 0.753596 -91 GCAGGTTGTGGGCCTAGCGGACTCGGAGCAGCC 36 70 0 GGCCGGGACT 0.560362 -51 GAGGAGGAGCGGCGCAGATGAGT 37 1 0 GGCGGTGAGT 0.976901 -300 TGCAGAGCGAAGCGATGAGGAGGAGCGGCGCAG 37 17 0 AGCGGGGAGG 0.850909 -284 GAGCAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 54 0 GGCGGTGAGT 0.976901 -247 GAGCAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 107 0 GGCGGTGAGT 0.976901 -194 GAGCAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 160 0 GGCGGTGAGT 0.976901 -141 GAGGAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 213 0 GGCGGTGAGT 0.976901 -88 TGCAGAGCGAAGCGATGAGGAGGAGCGGCGCAG 37 229 0 AGCGGGGAGG 0.850909 -72 TGTGGTGCGTGGCGGTGGCGGGTTTGAAGCAGG 39 143 1 GGCGGCGGGT 0.977808 -86 GAGCTACGGAGGCGATGCGCAGGTCAGTTTATC 40 111 1 GGCGGGCAGG 0.902313 -190 GCGTGTGCCTGACGTCGAGGGGTGGGCTTTGTT 40 278 1 GACGGGGGGT 0.783456 -23 GCCGCGCTCCGGCGTGGGCGGGGTGCGTTAGTC 43 146 0 GGCGGCGGGG 0.979979 -89 CGGCAACCGCGGCGCAGATTAGTGTGTGTGG 45 98 1 GGCGGTTAGT 0.498285 -21 CACAGTTGTGGGCCTGGCTGACGGATGGAGCCG 54 81 1 GGCCGTGACG 0.401895 -220 **** * ***** Masking position 3 Map Score: 74.7244 Number of sites scoring better than the average of aligned sites = 5837 Number in coding regions = 5425 Number in noncoding regions = 412 Number of orfs with sites within 600 bp upstream = 303 Fraction of orfs with sites within 600 bp upstream = 0.0486669 Motif number 8 CGTCCAGACCTGGGCCATGGTTGCGCTGCTGATC 1 37 0 TGGGGGTTGC 0.942284 -65 CGCGTTCGGCTTGGGTAGGGTGACGCCATGACCG 5 32 1 TTGGGGTGAC 0.503123 -67 ACTGACCTGATGAGCGACGGTGGCGCACCTACC 7 278 1 TGAGGGTGGC 0.741133 -23 TCGCGGCGATCTGGAGGGGCTGGCTGGATGTCCT 11 11 1 CTGGGCTGGC 0.715136 -67 GGATACCAGCTTGACCGTGGTGGCAGGTGCAGGA 12 122 1 TTGAGGTGGC 0.510542 -160 ATGATGAGAGTCGGAGAAGTTGGGAGCGGTAG 14 9 0 TCGGGTTGGG 0.782279 -193 GTCCATCCTATGGGCTGAGGTGGTTGGGCTTCGA 15 273 0 TGGGGGTGGT 0.889491 -28 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCACGGT 16 24 1 CCGGGGCGGG 0.972944 -194 TCGGCACGGTTTGGATTGGGTGGCGATCGCAAGC 16 48 1 TTGGGGTGGC 0.977334 -170 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCACGGT 16 81 1 CCGGGGCGGG 0.972944 -137 TCGGCACGGTTTGGATTGGGTGGCGATCGCAAGC 16 105 1 TTGGGGTGGC 0.977334 -113 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCACGGT 16 138 1 CCGGGGCGGG 0.972944 -80 TCGGCACGGTTTGGATTGGGTGGCGATCGCAAGC 16 162 1 TTGGGGTGGC 0.977334 -56 CGCGGCGGAGCCGGGTGCGGCGGGTCGGCACGC 16 195 1 CCGGGGCGGG 0.972944 -23 TCACGTCATACGGGGTTTTGTTGCAGTCAGCCAA 17 208 0 CGGGTGTTGC 0.530721 -49 GCTGCCCTCTGTGATCGGTGGCCGCCCGTCGT 18 129 0 CTGTGGTGGC 0.61416 -22 GACGCGGCGGCTGGGATCGGTGGGGTGAGCGCCC 21 149 1 CTGGGGTGGG 0.977265 -152 GCCGTGAAGCCCGGTGGGTGTGGCCGGCTGACGG 22 21 0 CCGGTGTGGC 0.854169 -156 GCCGAAACGGCGGGCTGTGGGGGCACCCCTAGCC 24 86 0 CGGGGGGGGC 0.925666 -111 GTGGGTCGTGGTTGGCGACTTGTAC 25 2 1 TGGGGGTTGG 0.91428 -299 GAGGGTAGTGACGGTGTCGGTGGGTTGTGGCGTG 25 201 0 ACGGGGTGGG 0.80697 -100 ACTGCGGCGGCCGGCGACGGTAGCGGCATGATGG 26 46 1 CCGGGGTAGC 0.792113 -28 GGATCTGCGCCCGGGTTTGGCGGCCGACGTCGGC 28 12 0 CCGGGGCGGC 0.982265 -256 GGGTGGCAAGTGGGGCCAAGTGGGGCACAACTGG 31 103 0 TGGGAGTGGG 0.772927 -198 ACCCCAGTTATGGGGCAAAGTGGGGGATTGTGGG 31 226 1 TGGGAGTGGG 0.772927 -75 TGGGGGATTGTGGGGTATGGTGGCTGAGGTGTTT 31 246 1 TGGGGGTGGC 0.991363 -55 CCATCGCGGATGGGTACAGTTGGCGCAGACACCA 32 37 1 TGGGGTTGGC 0.881879 -49 AGTCTCTTTGTCGGCAAGGGCGGGGTAGGAAAGT 33 43 1 TCGGGGCGGG 0.959493 -77 CCGGGTCAAGGTTGGCACGAGGGAG 34 2 1 CGGGGGTTGG 0.942117 -103 TGCCGTCTTCCGGGTCCGGTTTGCTGTCGTCAAG 35 34 1 CGGGGTTTGC 0.618395 -132 GGCACTGTGGTGCGTGGCGGTGGCGGGTTTGAAG 39 138 1 TGCGGGTGGC 0.886481 -91 GTCAGCGACGCTGGCGGCGGTCGCCGCCGACGGG 41 36 0 CTGGGGTCGC 0.742252 -265 TAGCCGCGCTCCGGCGTGGGCGGGGTGCGTTAGT 43 147 0 CCGGGGCGGG 0.972487 -88 CACACTAATCTGCGCCGCGGTTGCCGTCGGGACC 45 90 0 TGCGGGTTGC 0.526232 -29 TTAGACGGCGGGGGCTCGGGTGGTACCCATCGCG 50 21 1 GGGGGGTGGT 0.474465 -182 **** ****** Masking position 13 Map Score: 54.1133 Number of sites scoring better than the average of aligned sites = 8953 Number in coding regions = 8604 Number in noncoding regions = 349 Number of orfs with sites within 600 bp upstream = 274 Fraction of orfs with sites within 600 bp upstream = 0.044009 Motif number 9 CTCCTCATCGCTGCGCTCGGCATCGTCGCCG 5 67 0 CTCGCTCGGC 0.986816 -32 CAGAGCGGTGCTGCCCCCGGCGTGGACGCCC 7 225 1 CTCCCCCGGC 0.97735 -76 TCAGTATCACATAGCCTCGGCCGCCGGGGGC 7 252 0 ATGCCTCGGC 0.885681 -49 GTCGCGGGCACTGCGCCCGGCCAGCGTAAGT 9 73 0 CTCGCCCGGC 0.965453 -221 ATTCTTAGCACTCGCCTATGCCGAGTGCAAG 9 199 1 CTGCCTATGC 0.485082 -95 TCGTTCGACCGTGTCCTCGGCCCTCCGATCC 9 254 1 GTTCCTCGGC 0.893508 -40 CGAGTGGTCCCTAGCCTCGGCCGGAACGCCG 13 45 0 CTGCCTCGGC 0.987285 -54 ATCAACCCTTGTGCCCCCGGCAGGATTCGAA 15 114 1 GTCCCCCGGC 0.949555 -187 AGGAAGCGGGCTATCCTCGGAGCCGTCCAGC 17 46 1 CTTCCTCGGA 0.433393 -211 GCTGCCCTCTGTGATCGGTGGC 18 139 0 CTCCCTCTGT 0.730997 -12 TTGTCTCTCCTCGGCTTATTTGTTG 21 286 0 CTTCCTCGGC 0.950579 -15 CGCAGTGGCGTTACGCTCGGCGCTTACGCTG 24 17 0 TTCGCTCGGC 0.808984 -180 CGCGATGGATATCGCCTCGGTGAAGGGGCTC 28 53 1 ATGCCTCGGT 0.352031 -215 CTCCTCATCGCTTCGCTCTGCATCGTCACCG 37 28 1 CTCGCTCTGC 0.961682 -273 CTGCTCATCGCTTCGCTCTGCATCGTCACCG 37 81 1 CTCGCTCTGC 0.961682 -220 CTGCTCATCGCTTCGCTCTGCATCGTCACCG 37 134 1 CTCGCTCTGC 0.961682 -167 CTGCTCATCGCTTCGCTCTGCATCGTCACCG 37 187 1 CTCGCTCTGC 0.961682 -114 CTCCTCATCGCTTCGCTCTGCATCGTCACCG 37 240 1 CTCGCTCTGC 0.961682 -61 TTCGTCGGTCGTGGCCGCGGCATCGGTGCTG 39 47 1 GTGCCGCGGC 0.78222 -182 TATTTCCACAGTGCCCCCGGCACGACTCGAA 40 39 1 GTCCCCCGGC 0.949555 -262 GTCGACGGGCCTGGCCTCGGCCGGCCCCTCG 43 106 1 CTGCCTCGGC 0.987285 -129 GCCTGACCCGGTAGCCTCTGCAGGTT 44 62 1 GTGCCTCTGC 0.919077 -16 AACGTTTGGAGGAGGCTCGGCCGCCAGAGCT 52 147 0 GGGGCTCGGC 0.656254 -104 ** ******** Masking position 6 Map Score: 41.9612 Number of sites scoring better than the average of aligned sites = 1494 Number in coding regions = 1333 Number in noncoding regions = 161 Number of orfs with sites within 600 bp upstream = 133 Fraction of orfs with sites within 600 bp upstream = 0.021362 Motif number 10 TCGCCGCACAGCGGCGGTGATCGCGTACGTCCA 1 65 0 GCGCGGGACG 0.864119 -37 GACTAGGATCGCGGTTATCACCG 4 82 1 GCGTTACACG 0.877275 -13 CCTCATCGCTGCGCTCGGCATCGTCGCCGGCGG 5 63 0 GCGTCGCACG 0.972432 -36 CCCATACGGCGCGGTCGGCGACGACGGTGCATG 7 137 0 GCGTCGCGCG 0.954331 -164 CGTCGTCGCAGCGAGTGGCAGCGAGGACAACTT 9 113 0 GCGGTGCACG 0.982141 -181 CTCACCGGTCGCGAGTGCCAACGTTATTCTTAG 9 174 1 GCGGTGCACG 0.982141 -120 GGCCGCCCTCGCGGGTGGCGCCGATCACATTGT 15 60 1 GCGGTGCGCG 0.97022 -241 AGGGGATAGAGCGTCTGCCTCCGGAGCAGAAGG 15 152 0 GCGCTGCTCG 0.969721 -149 CGAATCCGTTGCGGTGGTCAGTGGGTAGCCGCG 15 243 0 GCGTGGCATG 0.605454 -58 CGGCTCCGCCGCGCTTGCGATCGCCA 16 4 0 GCGTTGGACG 0.91371 -214 CGGCTCCGCCGCGCTTGCGATCGCCACCCAATC 16 61 0 GCGTTGGACG 0.91371 -157 CGGCTCCGCCGCGCTTGCGATCGCCACCCAATC 16 118 0 GCGTTGGACG 0.91371 -100 CGGCTCCGCCGCGCTTGCGATCGCCACCCAATC 16 175 0 GCGTTGGACG 0.91371 -43 ATCGCCGAGTGCGCCAATCATCGACTTTGCAAC 17 175 0 GCGCAACACG 0.798491 -82 GCGTCGGTTCGCGTTAGGGTCCGCGCTCGCGGG 19 55 1 GCGTAGGTCG 0.572337 -35 TCTTCGCAGTGCGTGCACGTTCGGCGG 20 5 0 GCGGCAGTCG 0.572982 -79 CATTGCGCTGGCTTGTGACACCGTTGTGACGTC 21 105 0 GCTGTGCACG 0.643204 -196 TAGGGACGCGGCGGCTGGGATCGGTGGGGTGAG 21 145 1 GCGCTGGACG 0.954031 -156 GCCGAAGGCGGCGGGTGTCACTGATCTAGGCTG 21 221 1 GCGGTGCATG 0.882786 -80 GCTGCGGTTGGGGCCAGACAGCGCCGTGAAGCC 22 44 0 GGGCAGCACG 0.363767 -133 TCGACAACCTTCGGGTACCTTCGCCCGAAGGAT 23 36 0 TCGGTACTCG 0.0802755 -35 CGCCGTTTCGGCGCGCATCGTCGCCAGGCTAGA 24 108 1 GCGGCACGCG 0.860008 -89 CGCCGTTTCGGCGCGCATCGTCGCCAGGCTAAG 24 164 1 GCGGCACGCG 0.860008 -33 GGTCGTGTGCGCGTCTTTCAGTGCACCGTGCGA 25 77 1 GCGCTTCATG 0.601044 -224 CATGCAAATTGAGTGTGACTGCGGCGGCCGGCG 26 29 1 GAGGTGCTCG 0.451951 -45 TGTGACTGCGGCGGCCGGCGACGGTAGCGGCAT 26 42 1 GCGCCGCGCG 0.976166 -32 CCCGGGTTTGGCGGCCGACGTCGGCG 28 4 0 GCGCCGCGCG 0.976166 -264 CGCAGGATCTGCGCCCGGGTTTGGCGGCCGACG 28 17 0 GCGCCGGTTG 0.550589 -251 CTTCACCGAGGCGATATCCATCGCGGCGCGCAG 28 45 0 GCGTATCACG 0.613519 -223 CGGGCTAGCCGCGCGCTTCAGTGGTACAGAGAC 31 174 1 GCGGCTCATG 0.527203 -127 CGCGATGGCTGCGACTACCTGCGCGGGCAGCGG 32 12 0 GCGCTACTCG 0.862271 -74 GCCCACACCGGATGGTGTCTGCGCCAACTGTAC 32 50 0 GATGTGCTCG 0.0263214 -36 GTCCACTCTGGCGTCCGCCACCGCGGTATGTGA 33 75 1 GCGCCGCACG 0.985742 -45 CACCGATGCCGCGGCCACGACCGACGAAACCTC 39 42 0 GCGCCAGACG 0.796475 -187 CCGCGTCATCGCGACTAGCGTTGTGTTGGCACT 39 111 1 GCGCTACGTG 0.531988 -118 GATTTGCGAGTTGCTACGGTAGCGGCCC 41 6 1 GCGGTTCTCG 0.790437 -295 GACGCTGGCGGCGGTCGCCGCCGACGGGCCGCT 41 31 0 GCGTCGCGCG 0.954331 -270 AATCTGCGCCGCGGTTGCCGTCGGGACCGTGCC 45 85 0 GCGTTGCGCG 0.955876 -34 TGAGGCGCAGCGCTAGGCTTTGGGATACCCAC 47 10 1 GCGTAGCTTG 0.387607 -60 CACTGCCGTTGCGATAGTCTCCGGCC 48 4 0 GCGTAGCTCG 0.822116 -27 ACGCCGCTGCGCGGCGTGCATCGTCGCCGAGCT 50 110 1 GCGCGTCACG 0.77121 -93 ACGCCGCTGCGCGGCGTGCATCGTCGCCGAGCT 50 168 1 GCGCGTCACG 0.77121 -35 CAGTCGACCAGCGGATGTCAACGTTTGGAGGAG 52 164 0 GCGATGCACG 0.769985 -87 GCCACTTTGGGCGGCTTGCAGCCGGGACCACTA 53 41 1 GCGCTTCACC 0.228535 -35 GTGGATAACAGCGCCCGTCAATGCGTTCTCATC 54 51 0 GCGCCGCATG 0.904471 -250 *** *** ** ** Masking position 1 Map Score: 75.1595 Number of sites scoring better than the average of aligned sites = 9973 Number in coding regions = 9313 Number in noncoding regions = 660 Number of orfs with sites within 600 bp upstream = 486 Fraction of orfs with sites within 600 bp upstream = 0.0780597 Motif number 11 CGCAGCCATCGCGGATGGGTACAGTTGGCG 32 32 1 GCGGATGGGT 0.912514 -54 GAGGAGCGGCGCAGATGAGT 37 1 0 GCAGATGAGT 0.991004 -300 CAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 54 0 GCAGATGAGT 0.991004 -247 CAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 107 0 GCAGATGAGT 0.991004 -194 CAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 160 0 GCAGATGAGT 0.991004 -141 GAGGAGCGGCGCAGATGAGTCGCGCCGGTG 37 213 0 GCAGATGAGT 0.991004 -88 CAACCGCGGCGCAGATTAGTGTGTGTGG 45 101 1 GCAGATTAGT 0.934597 -18 ********** Masking position 5 Map Score: 13.8508 Number of sites scoring better than the average of aligned sites = 10 Number in coding regions = 5 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 12 GAGCGCAGCGATGAGGAGGAGCGGCGCAT 5 80 1 ATGAGGAGGA 0.988752 -19 GAGCGAAGCGATGAGGAGGAGCGGCGCAGA 37 16 0 ATGAGGAGGA 0.988752 -285 GAGCGAAGCGATGAGCAGGAGCGGCGCAGA 37 69 0 ATGAGCAGGA 0.981827 -232 GAGCGAAGCGATGAGCAGGAGCGGCGCAGA 37 122 0 ATGAGCAGGA 0.981827 -179 GAGCGAAGCGATGAGCAGGAGCGGCGCAGA 37 175 0 ATGAGCAGGA 0.981827 -126 GAGCGAAGCGATGAGGAGGAGCGGCGCAGA 37 228 0 ATGAGGAGGA 0.988752 -73 GCGCAGCGGCGTGAGGAGGAGCCGAGCAGT 50 92 0 GTGAGGAGGA 0.980306 -111 GCGCAGCGGCGTGAGGAGGAGCCGAGCAGT 50 150 0 GTGAGGAGGA 0.980306 -53 ********** Masking position 4 Map Score: 19.3088 Number of sites scoring better than the average of aligned sites = 32 Number in coding regions = 5 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 13 AGACCTGGGCCATGGTTGCGCTGCTGATCG 1 36 0 CATGGTTGCG 0.643374 -66 CTCCTCGCCGCACAGCGGCGGTGATCGCGT 1 72 0 CACAGCGGCG 0.457004 -30 CCATCAGCGTCGACGTGTCACATCGGAGCC 7 47 0 CGACGTGTCA 0.0793097 -254 GCCCATGCACCGTCGTCGCCGACCGCGCCG 7 134 1 CGTCGTCGCC 0.329324 -167 CCTGATGAGCGACGGTGGCGCACCTACC 7 283 1 GACGGTGGCG 0.677359 -18 AGGCCAGGCCCGTCGTCGCAGCGAGTGGCA 9 126 0 CGTCGTCGCA 0.237983 -168 GGCCTGGCCTCACCGTCCCGACCTAGCACT 9 146 1 CACCGTCCCG 0.407419 -148 GGGGCACCAACGCGCGGGCGTGGCCATGCC 12 78 1 CGCGCGGGCG 0.512356 -204 CCAGCTTGACCGTGGTGGCAGGTGCAGGAT 12 127 1 CGTGGTGGCA 0.370664 -155 GTCCGCGACGCGACGTGGCCCCTGGTGCAT 14 112 0 CGACGTGGCC 0.497352 -90 CAAGCTATCGGATGGTCGCGGCAGGAGGCA 14 177 0 GATGGTCGCG 0.191682 -25 TAGTTGGCTTCGTGGTCTCGCTCTCAAATT 15 27 0 CGTGGTCTCG 0.574551 -274 ACTATGCGGCCGCCCTCGCGGGTGGCGCCG 15 53 1 CGCCCTCGCG 0.84528 -248 CCCCATGGCGCAACGTGTCGTCGTGCGCCC 15 194 0 CAACGTGTCG 0.5043 -107 CCGGCTCCGCCGCGCTTGCGATCGCCA 16 8 0 CGCGCTTGCG 0.845062 -210 CCGGCTCCGCCGCGCTTGCGATCGCCACCC 16 65 0 CGCGCTTGCG 0.845062 -153 CCGGCTCCGCCGCGCTTGCGATCGCCACCC 16 122 0 CGCGCTTGCG 0.845062 -96 CCGGCTCCGCCGCGCTTGCGATCGCCACCC 16 179 0 CGCGCTTGCG 0.845062 -39 TCCGCAAGGTTGCGGGGGTTTGCT 17 5 1 CAAGGTTGCG 0.658688 -252 GGTGGCCGCCCGTCGTGGCGTGCCGAGAAC 18 115 0 CGTCGTGGCG 0.947968 -36 CGTTAGGGTCCGCGCTCGCGGGAAGAAGGT 19 66 1 CGCGCTCGCG 0.877476 -24 TGGCTTGTGACACCGTTGTGACGTCACCAT 21 100 0 CACCGTTGTG 0.341387 -201 CCCGAAATTTCGCAGTGGCGTTACGCTCGG 24 28 0 CGCAGTGGCG 0.907855 -169 GGCAGAAAATCGCAGTGGCGTTACGCTCGC 24 56 1 CGCAGTGGCG 0.907855 -141 CCCCACAGCCCGCCGTTTCGGCGCGCATCG 24 98 1 CGCCGTTTCG 0.754259 -99 TCTAGCCTGGCGACGATGCGCGCCGAAACG 24 111 0 CGACGATGCG 0.257219 -86 CTCCTCAGCCCGCCGTTTCGGCGCGCATCG 24 154 1 CGCCGTTTCG 0.754259 -43 CTTAGCCTGGCGACGATGCGCGCCGAAACG 24 167 0 CGACGATGCG 0.257219 -30 CCCACGAAAACACCGTGGGGCGCCACACAC 25 164 1 CACCGTGGGG 0.380896 -137 GTGTGCGCGCCCTGTCGGTAGG 27 8 1 CGCCCTGTCG 0.735117 -15 AGGCGATATCCATCGCGGCGCGCAGGATCT 28 40 0 CATCGCGGCG 0.640346 -228 AGAGCCCCTTCACCGAGGCGATATCCATCG 28 55 0 CACCGAGGCG 0.68353 -213 TGTTCGAAGCCGAGGTCGTGGCTCCCGCGA 28 202 1 CGAGGTCGTG 0.392011 -66 GCAACATGTGCGCGCTGACGATCGGGTTGG 30 67 1 CGCGCTGACG 0.240716 -143 TCTCCGGACTCACCGGGGCGGTTCACCCAG 31 28 1 CACCGGGGCG 0.726533 -273 CATCACATACCGCGGTGGCGGACGCCAGAG 33 80 0 CGCGGTGGCG 0.949971 -40 TTCACATACCCGAGGCCGTGGGCAAGCCGG 35 137 0 CGAGGCCGTG 0.133079 -29 TGCGCCCGTCCGCCCTGTCGGGGGCAGACC 36 14 0 CGCCCTGTCG 0.735117 -107 GCTGCACCTGCGCGGGGTCGAGTTCGGGCT 36 44 1 CGCGGGGTCG 0.580597 -77 TCTGCATCGTCACCGGCGCGACTCATCTGC 37 44 1 CACCGGCGCG 0.679561 -257 TCTGCATCGTCACCGGCGCGACTCATCTGC 37 97 1 CACCGGCGCG 0.679561 -204 TCTGCATCGTCACCGGCGCGACTCATCTGC 37 150 1 CACCGGCGCG 0.679561 -151 TCTGCATCGTCACCGGCGCGACTCATCTGC 37 203 1 CACCGGCGCG 0.679561 -98 TCTGCATCGTCACCGGCGCGCATGGTCAGC 37 256 1 CACCGGCGCG 0.679561 -45 ACAATGTCATCGAGGTGTCGACTCGATCAG 38 29 0 CGAGGTGTCG 0.730627 -105 AGTCCGCTGACAACGTGGCGCACGGCACAA 38 55 0 CAACGTGGCG 0.880984 -79 CCTGTTTCGGCACCCTGGCGAACACCGCGA 38 101 0 CACCCTGGCG 0.886539 -33 CGAAACAGGTCAACGCGGCGGT 38 122 1 CAACGCGGCG 0.579849 -12 CTGCCCAACACGAGGTTTCGTCGGTCGTGG 39 31 1 CGAGGTTTCG 0.414005 -198 TTTCGTCGGTCGTGGCCGCGGCATCGGTGC 39 46 1 CGTGGCCGCG 0.635224 -183 GTCGCGATGACGCGGTGGTGAAAGCCGATG 39 96 0 CGCGGTGGTG 0.829751 -133 TGTGGTGCGTGGCGGTGGCGGGTTTGAAGC 39 143 1 GGCGGTGGCG 0.847277 -86 GCCCAACCCGCGCGGGGTCGTGGCC 39 214 1 CGCGGGGTCG 0.580597 -15 AGCAGGTCAGCATGGTGGCGTGGCTTGAC 40 10 0 CATGGTGGCG 0.874306 -291 AACCAATAATTGACGTGGCGGTAGACCTTT 40 187 0 TGACGTGGCG 0.197084 -114 CAGGCACACGCATCGTTGCGGTAAACGGCT 40 259 0 CATCGTTGCG 0.643371 -42 GCCCCGATAGCATGGTCGCGATCGTTTCGA 41 254 1 CATGGTCGCG 0.786727 -47 TCCAAGGCTTGGACGTGTCGAAACGATCGC 41 271 0 GGACGTGTCG 0.149055 -30 GCCGGCCCCTCGTTGTTGCGTGACTAACGC 43 125 1 CGTTGTTGCG 0.110627 -110 TGTGAGATGCCGTCCTGGTGGTGCCGGGAT 43 192 1 CGTCCTGGTG 0.223503 -43 GCATTGCCGCCACGGTCGTGGCCGGGGCCC 45 54 1 CACGGTCGTG 0.514175 -65 GGGGCCCAGGCACGGTCCCGACGGCAACCG 45 77 1 CACGGTCCCG 0.407423 -42 TAATCTGCGCCGCGGTTGCCGTCGGGACCG 45 89 0 CGCGGTTGCC 0.529812 -30 GACCCCGATTCGCGCGGGCGGAAAGCGTTG 46 150 0 CGCGCGGGCG 0.512356 -65 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 50 101 0 CGCAGCGGCG 0.458327 -102 ATGCACGCCGCGCAGCGGCGTGAGGAGGAG 50 159 0 CGCAGCGGCG 0.458327 -44 GATGGTCCACCGCAGCGGCGGGTCCGACGC 51 13 0 CGCAGCGGCG 0.458327 -37 TTGCGCTCCTCGCGCTGGCGTCGTTTCAAC 52 81 0 CGCGCTGGCG 0.911037 -170 GCAAGCCGCCCAAAGTGGCGAAAACCCAAA 53 30 0 CAAAGTGGCG 0.51666 -46 ATTGGGCGCGCCCGGTCGCGGCACGTCCAG 54 195 0 CCCGGTCGCG 0.5607 -106 ********** Masking position 1 Map Score: 103.188 Number of sites scoring better than the average of aligned sites = 25001 Number in coding regions = 23286 Number in noncoding regions = 1715 Number of orfs with sites within 600 bp upstream = 863 Fraction of orfs with sites within 600 bp upstream = 0.138612 Motif number 14 CGCGTTCGGCTTGGGTAGGGTGACGCCATGAC 5 32 1 TTGGTGGGTG 0.984614 -67 GTCCATCCTATGGGCTGAGGTGGTTGGGCTTC 15 275 0 TGGGTAGGTG 0.949784 -26 TCGGCACGGTTTGGATTGGGTGGCGATCGCAA 16 48 1 TTGGTGGGTG 0.984614 -170 TCGGCACGGTTTGGATTGGGTGGCGATCGCAA 16 105 1 TTGGTGGGTG 0.984614 -113 TCGGCACGGTTTGGATTGGGTGGCGATCGCAA 16 162 1 TTGGTGGGTG 0.984614 -56 ACGGTGTCGGTGGGTTGTGGCGTGATCAAACG 25 193 0 TGGGTTGGCG 0.84967 -108 TGGGGGATTGTGGGGTATGGTGGCTGAGGTGT 31 246 1 TGGGTTGGTG 0.964415 -55 GCTGAGGTGTTTGGGTGAGATGGATTTGGCAG 31 268 1 TTGGTAGATG 0.603997 -33 ACGTCAATTATTGGTTATTGTGTGATCCTCGA 40 201 1 TTGGTTTGTG 0.686079 -100 TTAGACGGCGGGGGCTCGGGTGGTACCCATCG 50 21 1 GGGGTGGGTG 0.935315 -182 **** * ***** Masking position 6 Map Score: 9.97128 Number of sites scoring better than the average of aligned sites = 113 Number in coding regions = 97 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 15 CTGGCACACCCTACGGCCCGCTAGGC 6 20 0 CACCCTACGG 0.611892 -16 GCACCGTCGTCGCCGACCGCGCCGTATGGG 7 140 1 CGCCGACCGC 0.755542 -161 TAGTGCCGTGCACCCAACCTGCGGCACGAA 8 23 1 CACCCAACCT 0.172989 -38 GCAGTGCCCGCGACGGACGGCTCAAGTTGT 9 90 1 CGACGGACGG 0.777013 -204 CCACTCGCTGCGACGACGGGCCTGGCCTCA 9 128 1 CGACGACGGG 0.824988 -166 GGCCTGGCCTCACCGTCCCGACCTAGCACT 9 146 1 CACCGTCCCG 0.40193 -148 CCCGACCTAGCACTCACCGGTCGCGAGTGC 9 162 1 CACTCACCGG 0.437911 -132 TGATATCCGTCGACGAACCGCAGGAGCAA 10 10 0 CGACGAACCG 0.765428 -51 TAGCAGGGTACAACGACCGGGTAGACAGAG 12 226 1 CAACGACCGG 0.948564 -56 TCGGCCGGAACGCCGACTGGCTGAGTGTAG 13 30 0 CGCCGACTGG 0.886456 -69 CCTCCTGCCGCGACCATCCGATAGCTTGGA 14 179 1 CGACCATCCG 0.443667 -23 TAACGCGAACCGACGCCCGTCCTGTACCGC 19 41 0 CGACGCCCGT 0.726046 -49 CCGCCGAACGTGCACGCACTG 20 2 1 CGCCGAACGT 0.84213 -82 GCTGAACACTCGCCGAACGTGCAACAGCTG 20 54 0 CGCCGAACGT 0.84213 -30 AGTTCCTTTTCGACCATCGGCTCAATTGTC 21 23 1 CGACCATCGG 0.847462 -278 GTTGGCTAAACAACCACTGGCCGTCAGCCT 21 248 0 CAACCACTGG 0.656793 -53 CAGCCGGCCACACCCACCGGGCTTCACGGC 22 25 1 CACCCACCGG 0.944943 -152 AGCCTATCGACAACCTTCGGGTACCTTCGC 23 45 0 CAACCTTCGG 0.292795 -26 CCAGCGTAAGCGCCGAGCGTAACGCCACTG 24 16 1 CGCCGAGCGT 0.627598 -181 GTCCCCGGCGCGACCTATGGAGAACCGGAA 25 39 0 CGACCTATGG 0.349542 -262 ACGTGTGTGGCGCCCCACGGTGTTTTCGTG 25 166 0 CGCCCCACGG 0.825292 -135 GCGATGGCAGCGCCGCCCGGGGTGGACCGG 28 228 1 CGCCGCCCGG 0.933458 -40 CGAAGGGCACCAACCAACGGACACGCGATA 35 103 0 CAACCAACGG 0.861306 -63 CCTGCTTCAGCAACGACCGGACGCCATCAG 36 98 1 CAACGACCGG 0.948564 -23 GGTGTCCAACCTACGGTGTAGCGTCG 37 285 0 CAACCTACGG 0.585863 -16 AATTCCTCGACGGCCACCGTTAGATAAACT 40 136 0 CGGCCACCGT 0.499153 -165 CGGCGGTCGCCGCCGACGGGCCGCTACCGT 41 26 0 CGCCGACGGG 0.840091 -275 GATGGGTTTTCGATCACCGGTGTGGGCGAT 41 194 0 CGATCACCGG 0.681215 -107 GGGCGCACGTCGACGACCGTAAGCCGAGTG 41 228 0 CGACGACCGT 0.922297 -73 TGGGCCCCGGCCACGACCGTGGCGGCAATG 45 55 0 CCACGACCGT 0.399965 -64 GAATCGGGGTCGACGGCTGGCCGAGTGCTA 46 169 1 CGACGGCTGG 0.517795 -46 AGTCGGCAGTCGACCAGCGGATGTCAACGT 52 173 0 CGACCAGCGG 0.85709 -78 GGTAAGAATCCGACGAATGGCGTTAACACC 54 113 0 CGACGAATGG 0.738554 -188 ********** Masking position 1 Map Score: 29.9286 Number of sites scoring better than the average of aligned sites = 12617 Number in coding regions = 11710 Number in noncoding regions = 907 Number of orfs with sites within 600 bp upstream = 653 Fraction of orfs with sites within 600 bp upstream = 0.104883