AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00620_mtub_reg_300.orf -o00620_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 Rv0012 93 hypothetical protein Rv0012 #2 pabA 36 pabA #3 Rv0144 101 hypothetical protein Rv0144 #4 Rv0145 88 hypothetical protein Rv0145 #5 Rv0146 42 hypothetical protein Rv0146 #6 Rv0147 94 hypothetical protein Rv0147 #7 Rv0223c 98 hypothetical protein Rv0223c #8 Rv0224c 35 hypothetical protein Rv0224c #9 fadA2 141 fadA2 #10 Rv0407 77 hypothetical protein Rv0407 #11 Rv0458 67 hypothetical protein Rv0458 #12 Rv0460 59 hypothetical protein Rv0460 #13 Rv0461 37 hypothetical protein Rv0461 #14 Rv0462 63 hypothetical protein Rv0462 #15 Rv0692 164 hypothetical protein Rv0692 #16 adhB 98 adhB #17 Rv0767c 201 hypothetical protein Rv0767c #18 lpdB 300 lpdB #19 fadA 156 fadA #20 accD3 26 accD3 #21 Rv0976c 197 hypothetical protein Rv0976c #22 pabB 115 pabB #23 ppdK 212 ppdK #24 Rv1128c 101 hypothetical protein Rv1128c #25 mdh 170 mdh #26 fadA4 300 fadA4 #27 Rv1615 300 hypothetical protein Rv1615 #28 pykA 107 pykA #29 glcB 275 glcB #30 Rv1839c 58 hypothetical protein Rv1839c #31 PE_PGRS 162 PE_PGRS #32 Rv1842c 173 hypothetical protein Rv1842c #33 guaB1 32 guaB1 #34 gnd 29 gnd #35 Rv1846c 277 hypothetical protein Rv1846c #36 lldD2 22 lldD2 #37 pks12 300 pks12 #38 aceE 51 aceE #39 adhE2 300 adhE2 #40 Rv2331 74 hypothetical protein Rv2331 #41 mez 112 mez #42 pdhA 258 pdhA #43 scoA 82 scoA #44 fadD35 115 fadD35 #45 pca 24 pca #46 Rv2969c 96 hypothetical protein Rv2969c #47 lipN 300 lipN #48 accD5 49 accD5 #49 sseA 40 sseA #50 accA3 107 accA3 #51 Rv3292 30 hypothetical protein Rv3292 #52 aldB 26 aldB #53 lpdA 202 lpdA #54 mhpE 60 mhpE #55 Rv3536c 72 hypothetical protein Rv3536c #56 fadA6 64 fadA6 #57 Rv3557c 300 hypothetical protein Rv3557c #58 acs 300 acs #59 leuA 256 leuA Motif number 1 TCCTCGGGATCTGGCGGGACTACCTCGACA 1 16 1 CTGGCGGGAC 0.681461 -78 GATAGAAGTTGCAGCTGCAGGCATACCTTG 1 72 1 GCAGCTGCAG 0.637307 -22 ACGACTGCCGGCAGGGTCAGGCGG 2 5 1 CTGCCGGCAG 0.487656 -32 GCGTACGTCCAGACCTGGGCCATGGTTGCG 3 46 0 AGACCTGGGC 0.522716 -56 ACGTACGCGATCACCGCCGCTGTGCGGCGA 3 68 1 TCACCGCCGC 0.97568 -34 CTACGCTTCGGGGCCGCCGGTTAGGTCTCG 4 12 0 GGGCCGCCGG 0.501276 -77 CTCGGCATCGTCGCCGGCGGTCATGGCGTC 7 53 0 TCGCCGGCGG 0.819569 -46 GCGATGAGGAGGAGCGGCGCAT 7 87 1 GGAGCGGCGC 0.888976 -12 GGTCGATAGCCTAGCGGGCCGTAGGGTGTG 8 12 1 CTAGCGGGCC 0.772765 -24 GTGTGGGGGTCGGGCGCGCCAATACACGTA 9 30 1 CGGGCGCGCC 0.863184 -112 AGTATGGCCCTCAACGGCCGATCCCCCGAA 9 103 1 TCAACGGCCG 0.875269 -39 GGAGCGATCGCGAGCGCGGCGAAGCCGGGC 10 18 1 CGAGCGCGGC 0.930645 -60 GCTCACACTACCGCCGGGGCCACAATGGCT 11 14 0 CCGCCGGGGC 0.783648 -54 TCGGTTCCGGGTGCCGACCGGTAATCGTTG 13 11 0 GTGCCGACCG 0.658623 -27 ACCGAGCTTGTCACCGAGACCCTGGTTGAA 15 125 1 TCACCGAGAC 0.722256 -40 TGAGTGTAGGTCAACGGCGCTAGGGCGT 16 9 0 TCAACGGCGC 0.93448 -90 GTCGGCGTTCCGGCCGAGGCTAGGGACCAC 16 43 1 CGGCCGAGGC 0.893859 -56 GGGACTGTCCGCGACGCGACGTGGCCCCTG 17 118 0 GCGACGCGAC 0.801372 -84 GGCTTGCCTCCTGCCGCGACCATCCGATAG 17 173 1 CTGCCGCGAC 0.708293 -29 TAGGTGAGAAGGACCGGCCGGCGT 18 5 0 GGACCGGCCG 0.897171 -296 TTGAGCAGTATTGCCGGCACTAGGTGAGAA 18 25 0 TTGCCGGCAC 0.809266 -276 CAACCCCAAGAGGACGGCAGACGCAAAGTG 18 58 1 AGGACGGCAG 0.582208 -243 CCGGAACAAACCACCGCGACACGGCGTCTG 18 106 1 CCACCGCGAC 0.92485 -195 GGCGTCTGTCACACCGACACACCCACCTCG 18 128 1 ACACCGACAC 0.654426 -173 GGTGTTGTGTGTGCCGCGAGGTGGGTGTGT 18 144 0 GTGCCGCGAG 0.713313 -157 GGCACACACAACACCGACACTGAGACATAA 18 159 1 ACACCGACAC 0.654426 -142 GGTGGGCGATAGGCCGGCACGGCTCACCGG 18 229 1 AGGCCGGCAC 0.859382 -72 CCGGCACGGCTCACCGGCGCTAGGCGCGCG 18 242 1 TCACCGGCGC 0.984164 -59 TCGGACTCTGCCAGCGACGCTACGCGCGCC 18 264 0 CCAGCGACGC 0.907052 -37 ACCAACAGGTTGGCCGGGGGCCCTGTTAGG 19 63 1 TGGCCGGGGG 0.9604 -94 ACTAGGTCCCGTACCGGCACCCTAACAGGG 19 83 0 GTACCGGCAC 0.868636 -74 GCCGGGTGCTTTGCCGGCCCCAGGAGGTCA 21 16 0 TTGCCGGCCC 0.831008 -182 GTTTCGCTACGGGACGCCGGGTGCTTTGCC 21 31 0 GGGACGCCGG 0.842378 -167 TCTACTCCAATGGACGGCGCAGACCGGGCC 21 65 1 TGGACGGCGC 0.919424 -133 TGGACGGCGCAGACCGGGCCGCTTCGACTC 21 75 1 AGACCGGGCC 0.879032 -123 TCCCTTGGGATCGGCGACGCTACCAACCAA 21 150 0 TCGGCGACGC 0.886725 -48 CTTCAAGATCACACCGAGCGTCAACGTCTC 22 16 1 ACACCGAGCG 0.609495 -100 CGTTTCTCGCTGACCGCGAGACGTTGACGC 22 33 0 TGACCGCGAG 0.826076 -83 TCCGTGACCGGCTCCGGTCTCCGTCCC 22 99 0 CCGGCTCCGG 0.708252 -17 CTTGGTTCGACCGGCTCCCCCGCCTAACG 23 10 0 CCGGCTCCCC 0.662912 -203 CGTGGACAGCGCACCGGCCCAACGGCTTGG 23 35 0 GCACCGGCCC 0.844951 -178 TGCGCTGTCCACGCCGCCAGCCACCATCAC 23 52 1 ACGCCGCCAG 0.830584 -161 CCAGCCACCATCACCGGCAGCCGGCGTTGT 23 68 1 TCACCGGCAG 0.94785 -145 ATGCTGCGAGACAACGCCGGCTGCCGGTGA 23 78 0 ACAACGCCGG 0.753858 -135 CTACTTATGGGCAACGCCAGACCGCCCACT 23 178 0 GCAACGCCAG 0.823445 -35 CCGCCCGACGCCACAGCAGACAAC 24 5 1 CCGACGCCAC 0.818084 -97 ATTGTTGTCGGTGCCTGCACATAGCATTCA 24 79 1 GTGCCTGCAC 0.446912 -23 GTAACCTGGAGCACCGCCCGATCAGATCCA 25 29 0 GCACCGCCCG 0.902193 -142 ACCAAGTTCCATACCGGGACGCGTAACCTG 25 51 0 ATACCGGGAC 0.513836 -120 TGAAACTAGCGCACCGGCACCGGACGGACA 25 117 0 GCACCGGCAC 0.931482 -54 CTGGCGGTGCCGGGCTCCGCGGCGCAA 26 8 0 CGGGCTCCGC 0.689075 -293 GCGGAGCCCGGCACCGCCAGCAGTGCCTCG 26 18 1 GCACCGCCAG 0.934864 -283 AACGTCCAGGTCGGCGACCGCAATACCGAC 26 122 1 TCGGCGACCG 0.794391 -179 TAGCCAGCATGTGACGGGCGTGGACTTGAT 26 178 1 GTGACGGGCG 0.614054 -123 AAAGCCGATCTGACCGACCCGGAGAAGCAG 26 247 0 TGACCGACCC 0.84299 -54 GACAGCTGCCTGACCGGCGGTTTTGTTCCC 27 49 0 TGACCGGCGG 0.972583 -252 TGCCCGGCTCTCAGCGACAGCTGCCTGACC 27 64 0 TCAGCGACAG 0.657041 -237 ATGTGTCACTGCACCGGGCGACACCCGATG 27 94 0 GCACCGGGCG 0.971953 -207 AAATTGGTGCGCACCGAGGGTCGGGCACAT 27 144 0 GCACCGAGGG 0.915038 -157 GGCAACCGGTGCACCTCCGCTCAGAGATTC 27 191 0 GCACCTCCGC 0.876382 -110 TGCCCGGCTGCGAGCGACCGTGTGCGCCTC 27 240 0 CGAGCGACCG 0.771128 -61 GTTCCCAACATCGGCGCGGCAGAGCAGGAG 27 279 0 TCGGCGCGGC 0.938818 -22 CCAGCCAACCAGACCGCGGGTAGGCGCGG 28 10 0 AGACCGCGGG 0.852815 -98 CCGGTCAACACCACCGCGGGCAGCCCAGCC 28 34 0 CCACCGCGGG 0.964558 -74 GTTGACCGGTGTGCCGACCCGGCGGTGCCG 28 55 1 GTGCCGACCC 0.692242 -53 GACGGCGGTAGGGCCGGCACCGCCGGGTCG 28 69 0 GGGCCGGCAC 0.50768 -39 CAGCATAGTCGCGACGGCGGTAGGGCCGGC 28 81 0 GCGACGGCGG 0.792731 -27 TTCGGAATCACACCGCCGCAATGAGCGGC 29 10 1 ACACCGCCGC 0.945977 -266 ACCGCCGCAATGAGCGGCACCGACGTGGCC 29 22 1 TGAGCGGCAC 0.899147 -254 GGACAGCATCCCGCCGGGAGCGGCTCCGGC 29 49 0 CCGCCGGGAG 0.905823 -227 TGTAGTAGGCAGACCGCCCCACCCGTATGA 29 102 1 AGACCGCCCC 0.884577 -174 TCGCTGGCTGGCAACGCGACGCAGTGGCCG 29 138 0 GCAACGCGAC 0.778108 -138 AGCTCTGTCAGCACCTCGGCACCCGGCATG 29 169 0 GCACCTCGGC 0.808432 -107 GAGCTTGACGTGACCTGCGGTTGCGGGTCG 29 194 1 TGACCTGCGG 0.771007 -82 ACTACTACATCCGGCGACCCGCAACCGCAG 29 208 0 CCGGCGACCC 0.791617 -68 ATTGCTCAGCCTACCGGCCGACAAGACGAC 29 236 0 CTACCGGCCG 0.855293 -40 TGAATCCAGCTCGCCTGCGCGCGGGAG 30 8 0 TCGCCTGCGC 0.874772 -51 GTCTGACGGGACACCGAGCGTAATCGGGGG 31 28 1 ACACCGAGCG 0.609495 -135 GAAACGATTGTCAGCGGCAGCAGCCCCCGA 31 51 0 TCAGCGGCAG 0.909716 -112 TCAGTTGGCCCGAACGCCGGACGTGGTGGC 31 84 1 CGAACGCCGG 0.87639 -79 GCCGGACGTGGTGGCGGGACGTCAATACGC 31 99 1 GTGGCGGGAC 0.730699 -64 TGTAACCGCTGGGACTGCGCACCCGGTCCC 31 129 1 GGGACTGCGC 0.666636 -34 GAGATAGCTCGTGGCGCCAGCT 32 3 0 GTGGCGCCAG 0.458037 -171 AAGGGATGACGTGCCGCGGGCACCCGTCCA 32 85 1 GTGCCGCGGG 0.828442 -89 GTTTTCCAGGCGAGCGGCCGGTACTGGCTC 32 123 1 CGAGCGGCCG 0.905106 -51 GCGCTATATCGGGCCGAGCCAGTACCGGCC 32 138 0 GGGCCGAGCC 0.871795 -36 TATAGCGCGACGACCGAGCCGCCC 32 160 1 CGACCGAGCC 0.82065 -14 TGTGTCTACACCAACGGGCGAGCCCCGTGC 35 16 1 CCAACGGGCG 0.856741 -262 GTCGACTCGATCGGCGAGCCCCGTGCCTTG 35 48 0 TCGGCGAGCC 0.744107 -230 CCGATCGAGTCGACCGGGGGTCACTGCAGC 35 64 1 CGACCGGGGG 0.968014 -214 CGAGCCACAACGACCGCGGCCGAGTCCTGA 35 96 0 CGACCGCGGC 0.960215 -182 AGGCCCGGTACGGCCGCCCGCCGGTTTGGA 35 198 1 CGGCCGCCCG 0.500408 -80 CGCCCGCCCGTCAACGCCGGATGGGCGCAT 37 58 0 TCAACGCCGG 0.876193 -243 CCGGCGTTGACGGGCGGGCGGGTACAGTCG 37 68 1 CGGGCGGGCG 0.865285 -233 AGTCGCGCCATGGACGGCAGGCTTTGCACG 37 93 1 TGGACGGCAG 0.763017 -208 GTGAGTATTGCCAACTCCGGCAGGATTTCA 37 156 0 CCAACTCCGG 0.487683 -145 CTTCGGTGACTCGGCGGGAGCCGCATCCGG 37 236 1 TCGGCGGGAG 0.873298 -65 TGGCCGTCGCCGACCGCCGGATGCGGCTCC 37 252 0 CGACCGCCGG 0.917457 -49 GCGATGAGGAGGAGCGGCGCAGATGAGT 39 9 0 GGAGCGGCGC 0.888976 -292 CTCTGCATCGTCACCGGCGCGACTCATCTG 39 43 1 TCACCGGCGC 0.984164 -258 GCGATGAGCAGGAGCGGCGCAGATGAGTCG 39 62 0 GGAGCGGCGC 0.888976 -239 CTCTGCATCGTCACCGGCGCGACTCATCTG 39 96 1 TCACCGGCGC 0.984164 -205 GCGATGAGCAGGAGCGGCGCAGATGAGTCG 39 115 0 GGAGCGGCGC 0.888976 -186 CTCTGCATCGTCACCGGCGCGACTCATCTG 39 149 1 TCACCGGCGC 0.984164 -152 GCGATGAGCAGGAGCGGCGCAGATGAGTCG 39 168 0 GGAGCGGCGC 0.888976 -133 CTCTGCATCGTCACCGGCGCGACTCATCTG 39 202 1 TCACCGGCGC 0.984164 -99 GCGATGAGGAGGAGCGGCGCAGATGAGTCG 39 221 0 GGAGCGGCGC 0.888976 -80 CTCTGCATCGTCACCGGCGCGCATGGTCAG 39 255 1 TCACCGGCGC 0.984164 -46 GCGCGCATGGTCAGCGACGCTACACCGTAG 39 271 1 TCAGCGACGC 0.872299 -30 CCTGCCTCGCCGAGCGCCCCCGACAATCGG 41 27 1 CGAGCGCCCC 0.903552 -86 CGCCAGTGTTGCGGCGAGCGGAAGCTTTGG 42 93 1 GCGGCGAGCG 0.810031 -166 CCGAAGTTGATCGCCGGCCGCACCAAAGCT 42 115 0 TCGCCGGCCG 0.847543 -144 GGATGTGCTGTGAGCGCCGCACCACCAGCG 42 166 1 TGAGCGCCGC 0.94027 -93 CGCACCACCAGCGCCGACGCTAAGGATGGA 42 183 1 GCGCCGACGC 0.767867 -76 GTCCCTAGACGCACCGCGGGGGCAATGGTA 43 12 1 GCACCGCGGG 0.972279 -71 CGCCTCTAGCGTACCGGCGGCAAGCCAGCC 46 16 0 GTACCGGCGG 0.880179 -81 CCGCGGTCAGGCGACGGCGCCTCTAGCGTA 46 33 0 GCGACGGCGC 0.769941 -64 CGCCGTCGCCTGACCGCGGCCGCGACAAGC 46 44 1 TGACCGCGGC 0.944242 -53 CTGTGGCTCAGCACCTGCCCAGGTGTTGAT 47 73 0 GCACCTGCCC 0.875412 -228 ACAGCCTTCGGCGACGGCGGCGTAAGCCGC 47 99 1 GCGACGGCGG 0.792731 -202 CAAGCGGTAGGTGCCGCGAGTCCGGCGTGC 47 184 0 GTGCCGCGAG 0.713313 -117 TGCCCGGTGTCGGCCGGCAGGACCCGAAAG 47 212 1 CGGCCGGCAG 0.511387 -89 GACATCCAGCCTGACGGCGCGGATCGAGTG 47 241 1 CTGACGGCGC 0.742611 -60 GTCGATGTTATCGGCTGCCGCACACTACTT 48 26 0 TCGGCTGCCG 0.656218 -24 CTACCGCTGGCGACCTGGCCCAGTCCGAAG 49 11 0 CGACCTGGCC 0.693117 -30 CGTGAGCGGGTCAGCGGCGCGACGCTTAAA 50 23 1 TCAGCGGCGC 0.972523 -85 GGAGACTATCGCAACGGCAGTGCCGC 51 15 1 GCAACGGCAG 0.881339 -16 GAAAGCTTAGACGGCGGGGGCTCGGGTGGT 53 15 1 ACGGCGGGGG 0.893334 -188 GACCCGCACCGCAGCGCGGCGCGATGGGTA 53 44 0 GCAGCGCGGC 0.961109 -159 GATGAATTCTTGGACGCGCGGCTGGTGTC 54 10 0 TGGACGCGCG 0.678162 -51 GACCGGGCCAGTAGCGCCCGACCCGAGCAA 55 29 0 GTAGCGCCCG 0.771876 -44 CTCGTAGGCGTGACCGGGCCAGTAGCGCCC 55 40 0 TGACCGGGCC 0.943793 -33 CCACTCACTGGCAACGGGAGAGGAGCGGTT 56 45 1 GCAACGGGAG 0.815412 -20 TTAGGCTATGACGACGCGCGGAAGAATATG 57 28 1 ACGACGCGCG 0.565933 -273 CCTCGATCCTGCACCTGGGCCGGGCTGTGC 57 137 1 GCACCTGGGC 0.870533 -164 AGGCGTCCATCCAGCGCCAGCAACGTCGCA 57 172 1 CCAGCGCCAG 0.891106 -129 CGCCCTTCGCTCACCGGGGCATTAGATGCG 57 198 0 TCACCGGGGC 0.974733 -103 CATCGAGGTCGCAGCTGGCCGAGCAAGCGC 57 261 1 GCAGCTGGCC 0.698531 -40 CCAACGCGATCCGCCGCGCCGATAAAGCTA 58 21 1 CCGCCGCGCC 0.860047 -280 CCGGTGCCAACGAACGACGCCACATCGCAC 58 52 1 CGAACGACGC 0.731062 -249 GCAACGGAGATCGGCTGGCGTGAGCGACAT 58 82 0 TCGGCTGGCG 0.531571 -219 TGGCAGAGGTTGAGCTGGGCAAAGTCGTCA 58 245 0 TGAGCTGGGC 0.583572 -56 GAGTCAGCGCAGGCCGGCGCGCCCCCTATT 59 48 0 AGGCCGGCGC 0.82063 -209 TGCTCCTCCTCGGACGCCGCGACGGGGTCT 59 157 1 CGGACGCCGC 0.839166 -100 AAGGAACCTCAGACCGGCGCATCGCGAACG 59 214 0 AGACCGGCGC 0.951174 -43 ********** Masking position 5 Map Score: 219.744 Number of sites scoring better than the average of aligned sites = 107781 Number in coding regions = 101476 Number in noncoding regions = 6305 Number of orfs with sites within 600 bp upstream = 1556 Fraction of orfs with sites within 600 bp upstream = 0.24992 Motif number 2 CCAGCGCTATCCGACGATCAGCAGCGCAACC 3 22 1 CCGAGATCAG 0.674172 -80 CTGGACGTACGCGATCACCGCCGCTGTGCGG 3 64 1 GCGACACCGC 0.341281 -38 CCGCCGCTGTGCGGCGAGGAGATCCGAAACG 3 81 1 GCGGGAGGAG 0.94471 -21 TCACTACGCTTCGGGGCCGCCGGTTAGGTCT 4 14 0 TCGGGCCGCC 0.797938 -75 GGCGCTCATCCTGTGCTCCCTC 5 31 0 GCGCCATCCT 0.579488 -12 ATGACCGCCGGCGACGATGCCGAGCGCAGCG 7 59 1 GCGAGATGCC 0.915648 -40 GCCGAGCGCAGCGATGAGGAGGAGCGGCGCA 7 77 1 GCGAGAGGAG 0.946911 -22 ACGTGTATTGGCGCGCCCGACCCCCACACGA 9 28 0 GCGCCCCGAC 0.845963 -114 CCCTCAACGGCCGATCCCCCGAACTGATCAA 9 110 1 CCGACCCCCG 0.826312 -32 CCCGGCTTCGCCGCGCTCGCGATCGCTCCAT 10 16 0 CCGCCTCGCG 0.844029 -62 TGCCATAAACGCGACCCGCCACGCCCGGCTT 10 39 0 GCGACCGCCA 0.734022 -39 GCTCACACTACCGCCGGGGCCACAATGGCTT 11 13 0 CCGCGGGGCC 0.648415 -55 CATGATTTTGACGAGGAGCCGAATACG 11 51 1 ACGAGAGCCG 0.558871 -17 CTGGGTCAGGCCGACGAGCACTCGACCATTA 14 32 1 CCGAGAGCAC 0.830708 -32 CAGCGATCCGTCGATCTGGACACAATATGGC 15 41 0 TCGACTGGAC 0.415363 -124 GATCGACGGATCGCTGTCGAGACCTGCTGGC 15 56 1 TCGCGTCGAG 0.646319 -109 ACGCCCTAGCGCCGTTGACCTACACTCAG 16 9 1 GCGCGTTGAC 0.749784 -90 CAGCCAGTCGGCGTTCCGGCCGAGGCTAGGG 16 37 1 GCGTCCGGCC 0.663489 -62 AAGTGTCCAATCGATGATGAGAGTCGGAGAA 17 25 0 TCGAGATGAG 0.572221 -177 GGATACGGTCTCGATGAGGCAATATCGGACA 17 55 0 TCGAGAGGCA 0.650359 -147 GGACGGTGTAGCGGCCTTGCGGATACGGTCT 17 75 0 GCGGCTTGCG 0.768973 -127 CCCTGGTGCATCGGTCAGGACGGTGTAGCGG 17 92 0 TCGGCAGGAC 0.614514 -110 TGTCCGCGACGCGACGTGGCCCCTGGTGCAT 17 112 0 GCGAGTGGCC 0.940207 -90 GCCTCCTGCCGCGACCATCCGATAGCTTGGA 17 178 1 GCGACATCCG 0.868075 -24 CTTGGGGTTGGCGTTGAGCAGTATTGCCGGC 18 37 0 GCGTGAGCAG 0.623201 -264 TGCCGGCCTATCGCCCACCAGACGCAAAAGC 18 217 0 TCGCCACCAG 0.644736 -84 GCGCCTAGCGCCGGTGAGCCGTGCCGGCCTA 18 238 0 CCGGGAGCCG 0.950631 -63 GCCTATCCGGGCGACGATGCGCGCCGCAGCG 19 20 1 GCGAGATGCG 0.939476 -137 GGGCAAGGTATCGCTGCGGCGCGCATCGTCG 19 31 0 TCGCGCGGCG 0.957953 -126 GCGATGAGGCTATATAGGCTG 20 16 0 GCGAGAGGCT 0.852453 -11 GGCAAAGCACCCGGCGTCCCGTAGCGAAACG 21 31 1 CCGGGTCCCG 0.807221 -167 GGCCCGGTCTGCGCCGTCCATTGGAGTAGAG 21 64 0 GCGCGTCCAT 0.389173 -134 GCTTCCTGAGTCGAAGCGGCCCGGTCTGCGC 21 81 0 TCGAGCGGCC 0.892994 -117 GTTGGTAGCGTCGCCGATCCCAAGGGAGGAA 21 153 1 TCGCGATCCC 0.810038 -45 ATGCCGTTTCTCGCTGACCGCGAGACGTTGA 22 36 0 TCGCGACCGC 0.358684 -80 GTGTTGCTGTGCGAGCAGCCAATGCCAATGC 22 63 0 GCGACAGCCA 0.755651 -53 GGCGTGGACAGCGCACCGGCCCAACGGCTTG 23 36 0 GCGCCCGGCC 0.970435 -177 ATGGTGGCTGGCGGCGTGGACAGCGCACCGG 23 48 0 GCGGGTGGAC 0.836103 -165 AGTAGTCCGACCGCTGACCAAGGCGCCCCCT 23 137 1 CCGCGACCAA 0.478522 -76 CCCACAGTGGGCGGTCTGGCGTTGCCCATAA 23 173 1 GCGGCTGGCG 0.918653 -40 CAACCTCCGATCGCGGTGGATCTGATCGGGC 25 13 1 TCGCGTGGAT 0.288674 -158 ATCTGATCGGGCGGTGCTCCAGGTTACGCGT 25 32 1 GCGGGCTCCA 0.59762 -139 GTTGAAACTAGCGCACCGGCACCGGACGGAC 25 118 0 GCGCCCGGCA 0.866948 -53 TTGCGCCGCGGAGCCCGGCACCG 26 3 1 GCGCGCGGAG 0.968075 -298 GGCACTGCTGGCGGTGCCGGGCTCCGCGGCG 26 14 0 GCGGGCCGGG 0.693499 -287 CAGCAGTGCCTCGCGGATGCCCTGATCGTCG 26 35 1 TCGCGATGCC 0.840599 -266 GAGGAAATCAACGACGATCAGGGCATCCGCG 26 46 0 ACGAGATCAG 0.11228 -255 ATTGCGGTCGCCGACCTGGACGTTGCCATCG 26 115 0 CCGACTGGAC 0.57609 -186 GCCGATCTGACCGACCCGGAGAAGCAGATTC 26 243 0 CCGACCGGAG 0.802106 -58 GCTTTCGGGTGCGCTGAGGAGGTAGTCATAA 26 272 1 GCGCGAGGAG 0.971469 -29 GCCTCCAATCCCGCACAGCCGCGACCAACTC 27 18 1 CCGCCAGCCG 0.951672 -283 AACAAAACCGCCGGTCAGGCAGCTGTCGCTG 27 52 1 CCGGCAGGCA 0.641195 -249 CGGGCGACACCCGATGTGCCCGGCTCTCAGC 27 79 0 CCGAGTGCCC 0.859326 -222 TTGTGGCCGTGCGATGTGCCCGACCCTCGGT 27 131 1 GCGAGTGCCC 0.925903 -170 TGCCCGACCCTCGGTGCGCACCAATTTGAGC 27 147 1 TCGGGCGCAC 0.686181 -154 ACACGGTCGCTCGCAGCCGGGCACAACGAAC 27 247 1 TCGCGCCGGG 0.534712 -54 GTTCCCAACATCGGCGCGGCAGAGCAGGAGT 27 278 0 TCGGGCGGCA 0.613404 -23 CAACACCACCGCGGGCAGCCCAGCCAACCAG 28 28 0 GCGGCAGCCC 0.933928 -80 GACCGGTGTGCCGACCCGGCGGTGCCGGCCC 28 58 1 CCGACCGGCG 0.922888 -50 GCCGGCCCTACCGCCGTCGCGACTATGCTGA 28 81 1 CCGCGTCGCG 0.911672 -27 ATGAGCGGCACCGACGTGGCCGGAGCCGCTC 29 31 1 CCGAGTGGCC 0.884439 -245 TACGGGTGGGGCGGTCTGCCTACTACAATCC 29 98 0 GCGGCTGCCT 0.500415 -178 ACCCGTATGATCGCTGCGGCCACTGCGTCGC 29 122 1 TCGCGCGGCC 0.940942 -154 TTGCCAGCCAGCGAGCATGCCGGGTGCCGAG 29 154 1 GCGACATGCC 0.850554 -122 ACTACTACATCCGGCGACCCGCAACCGCAGG 29 207 0 CCGGGACCCG 0.907455 -69 CTCCCGCGCGCAGGCGAGCTGGATTC 30 6 1 GCGCCAGGCG 0.98138 -53 CCGATTACGCTCGGTGTCCCGTCAGACACCG 31 24 0 TCGGGTCCCG 0.686401 -139 GGGACCGGGTGCGCAGTCCCAGCGGTTACAG 31 128 0 GCGCGTCCCA 0.704 -35 GACGCGCTCCTCACGGGACCGGGT 31 149 0 GCGCCCTCAC 0.722893 -14 GTATCGCGCTGCGCGGTTGCGAGCGAAAGGG 32 59 1 GCGCGTTGCG 0.926752 -115 ATGACGTGCCGCGGGCACCCGTCCACACCGT 32 90 1 GCGGCACCCG 0.912731 -84 GGTTTTCCAGGCGAGCGGCCGGTACTGGCTC 32 122 1 GCGACGGCCG 0.545564 -52 AGCGCGACGACCGAGCCGCCC 32 163 1 CCGACCGCCC 0.868565 -11 GTCGACTCGATCGGCGAGCCCCGTGCCTTGG 35 47 0 TCGGGAGCCC 0.87892 -231 GCCACAACGACCGCGGCCGAGTCCTGAGGGC 35 92 0 CCGCGCCGAG 0.879381 -186 GCATTGACATGCGCCCATCCGGCGTTGACGG 37 50 1 GCGCCATCCG 0.92618 -251 CCGTCGTACGGCGCTCTGGCGCAAGTTCGCT 37 187 0 GCGCCTGGCG 0.957455 -114 CGCCGAGTCACCGAAGTTGCTGCACAAAACG 37 221 0 CCGAGTTGCT 0.261363 -80 ATATTGGCCGTCGCCGACCGCCGGATGCGGC 37 255 0 TCGCGACCGC 0.415438 -46 AACAGCGCAAGCGAACCCGACCGAGTTCGGG 38 17 1 GCGACCCGAC 0.742046 -35 ACCCTCGCGGATCACCCGAACTCGG 38 37 0 TCGCGATCAC 0.590652 -15 AGGAGGAGCGGCGCAGATGAGT 39 2 0 GCGCGATGAG 0.909392 -299 GCAGAGCGAAGCGATGAGGAGGAGCGGCGCA 39 18 0 GCGAGAGGAG 0.946911 -283 AGCAGGAGCGGCGCAGATGAGTCGCGCCGGT 39 55 0 GCGCGATGAG 0.909392 -246 GCAGAGCGAAGCGATGAGCAGGAGCGGCGCA 39 71 0 GCGAGAGCAG 0.934582 -230 AGCAGGAGCGGCGCAGATGAGTCGCGCCGGT 39 108 0 GCGCGATGAG 0.909392 -193 GCAGAGCGAAGCGATGAGCAGGAGCGGCGCA 39 124 0 GCGAGAGCAG 0.934582 -177 AGCAGGAGCGGCGCAGATGAGTCGCGCCGGT 39 161 0 GCGCGATGAG 0.909392 -140 GCAGAGCGAAGCGATGAGCAGGAGCGGCGCA 39 177 0 GCGAGAGCAG 0.934582 -124 AGGAGGAGCGGCGCAGATGAGTCGCGCCGGT 39 214 0 GCGCGATGAG 0.909392 -87 GCAGAGCGAAGCGATGAGGAGGAGCGGCGCA 39 230 0 GCGAGAGGAG 0.946911 -71 CGGTGTAGCGTCGCTGACCATGCGCGCCGGT 39 267 0 TCGCGACCAT 0.275218 -34 TCGGGGGCGCTCGGCGAGGCAGGTCGAGCAC 41 19 0 TCGGGAGGCA 0.640528 -94 GCCTCGCCGAGCGCCCCCGACAATCGGGTCG 41 30 1 GCGCCCCGAC 0.845968 -83 GGGCGCAGATCCCCCGCGACACG 42 3 1 GCGCGATCCC 0.942773 -256 GCGTTCGCGATCGGTCCGGACTCTTCACATT 42 42 1 TCGGCCGGAC 0.586694 -217 CGCCAGTGTTGCGGCGAGCGGAAGCTTTGGT 42 93 1 GCGGGAGCGG 0.777236 -166 CGCTGGTGGTGCGGCGCTCACAGCACATCCC 42 165 0 GCGGGCTCAC 0.717159 -94 CGCACCACCAGCGCCGACGCTAAGGATGGAA 42 183 1 GCGCGACGCT 0.844931 -76 ACCGCAGAGCCTCCTAGCATTT 43 71 0 CCGCGAGCCT 0.812735 -12 GGCGCCTCTAGCGTACCGGCGGCAAGCCAGC 46 17 0 GCGTCCGGCG 0.73818 -80 TGTCGCGGCCGCGGTCAGGCGACGGCGCCTC 46 40 0 GCGGCAGGCG 0.96357 -57 GACCGCGGCCGCGACAAGCCGACAAATCGAG 46 55 1 GCGAAAGCCG 0.284062 -42 AGTTTCGCTGATCCTCACGTGCTCG 46 82 0 TCGCGATCCT 0.400833 -15 GCGGCTTACGCCGCCGTCGCCGAAGGCTGTG 47 98 0 CCGCGTCGCC 0.878315 -203 GTGTTGAATGCCGACCAGCACTATTCGCGGC 47 124 0 CCGACAGCAC 0.720086 -177 TGCCGCGAGTCCGGCGTGCCCAACGGCCAAC 47 172 0 CCGGGTGCCC 0.855541 -129 CAGCCTGACGGCGCGGATCGAGTGTCCGTTG 47 247 1 GCGCGATCGA 0.220701 -54 GATCGAGTGTCCGTTGCTGCGCGTGACAGAG 47 262 1 CCGTGCTGCG 0.435477 -39 CCTACCGCTGGCGACCTGGCCCAGTCCGAAG 49 11 0 GCGACTGGCC 0.891826 -30 AAGCGTCGCGCCGCTGACCCGCTCACGCGGT 50 19 0 CCGCGACCCG 0.949892 -89 TGGGTACCACCCGAGCCCCCGCCGTCTAAGC 53 19 0 CCGACCCCCG 0.82639 -184 TGACGATGACCCGCACCGCAGCGCGGCGCGA 53 50 0 CCGCCCGCAG 0.860097 -153 GATGCACGCCGCGCAGCGGCGTGAGGAGGAG 53 101 0 GCGCGCGGCG 0.988954 -102 ACACAGCTCGGCGACGATGCACGCCGCGCAG 53 116 0 GCGAGATGCA 0.682991 -87 GATGCACGCCGCGCAGCGGCGTGAGGAGGAG 53 159 0 GCGCGCGGCG 0.988954 -44 ACCTAGCTCGGCGACGATGCACGCCGCGCAG 53 174 0 GCGAGATGCA 0.682991 -29 CGCTACTGGCCCGGTCACGCCTACGAGGGGA 55 43 1 CCGGCACGCC 0.81643 -30 TCGGCGAAGTCCCCTCGTAGGCGT 55 59 0 GCGAGTCCCC 0.86243 -14 CCCCGTGTCGACGACGATGCGGTGGGGGTAC 56 15 1 ACGAGATGCG 0.315914 -50 GACGCCTTGCCCGCACAGCCCGGCCCAGGTG 57 148 0 CCGCCAGCCC 0.930816 -153 GGCATTAGATGCGACGTTGCTGGCGCTGGAT 57 180 0 GCGAGTTGCT 0.420957 -121 GATGCGCCCTTCGCTCACCGGGGCATTAGAT 57 201 0 TCGCCACCGG 0.305789 -100 CAGCGGTGCCCCAACGCGATCCG 58 3 1 GCGGGCCCCA 0.713354 -298 CCAACGCGATCCGCCGCGCCGATAAAGCTAA 58 21 1 CCGCGCGCCG 0.97225 -280 AGCGACATGTGCGATGTGGCGTCGTTCGTTG 58 59 0 GCGAGTGGCG 0.957419 -242 ATCGCACATGTCGCTCACGCCAGCCGATCTC 58 75 1 TCGCCACGCC 0.822508 -226 CACAGTGCAATCGCTGACCAGGATGCAGTCA 58 216 0 TCGCGACCAG 0.775699 -85 AGAATAGGGGGCGCGCCGGCCTGCGCTGACT 59 46 1 GCGCCCGGCC 0.97043 -211 GTCGCGGCGTCCGAGGAGGAGCACCCGCTGC 59 149 0 CCGAGAGGAG 0.896709 -108 GGATCAGACCCCGTCGCGGCGTCCGAGGAGG 59 161 0 CCGTGCGGCG 0.723554 -96 CGGGACGTTCGCGATGCGCCGGTCTGAGGTT 59 209 1 GCGAGCGCCG 0.9737 -48 **** ****** Masking position 3 Map Score: 174.124 Number of sites scoring better than the average of aligned sites = 65026 Number in coding regions = 60435 Number in noncoding regions = 4591 Number of orfs with sites within 600 bp upstream = 1429 Fraction of orfs with sites within 600 bp upstream = 0.229521 Motif number 3 GCGCTATCCGACGATCAGCAGCGCAACCATGGC 3 25 1 ACGATCAGCG 0.846285 -77 TACGCGATCACCGCCGCTGTGCGGCGAGGAGAT 3 71 1 CCGCCGCGCG 0.938221 -31 ACCGCCGGCGACGATGCCGAGCGCAGCGATGAG 7 62 1 ACGATGCGCG 0.993194 -37 TTCAGCTGCCTTCCGTATCGTGTGG 9 3 1 CAGCTGCCCG 0.937425 -139 GCGGTCATGGCAGCTGACCAGCGCG 12 45 1 CAGCTGAGCG 0.903474 -15 TATCCGGGCGACGATGCGCGCCGCAGCGATACC 19 23 1 ACGATGCCCG 0.97287 -134 GGTAGCGTCGCCGATCCCAAGGGAGGAATCGCA 21 156 1 CCGATCCGGG 0.889397 -42 ACCGCCCGATCAGATCCACCGCGATCGGAGGTT 25 14 0 CAGATCCGCG 0.948188 -157 GTGGCCGGAGCCGCTCCCGGCGGGATGCTGTCC 29 46 1 CCGCTCCCGG 0.616367 -230 ATCGCTGCGGCCACTGCGTCGCGTTGCCAGCCA 29 131 1 CCACTGCGCG 0.922523 -145 CGCGCCGGTGACGATGCAGAGCGAAGCGATGAG 39 31 0 ACGATGCGCG 0.993194 -270 AGGAGCGGCGCAGATGAGTCGCGCCGGTGACGA 39 50 0 CAGATGAGCG 0.919575 -251 CGCGCCGGTGACGATGCAGAGCGAAGCGATGAG 39 84 0 ACGATGCGCG 0.993194 -217 AGGAGCGGCGCAGATGAGTCGCGCCGGTGACGA 39 103 0 CAGATGAGCG 0.919575 -198 CGCGCCGGTGACGATGCAGAGCGAAGCGATGAG 39 137 0 ACGATGCGCG 0.993194 -164 AGGAGCGGCGCAGATGAGTCGCGCCGGTGACGA 39 156 0 CAGATGAGCG 0.919575 -145 CGCGCCGGTGACGATGCAGAGCGAAGCGATGAG 39 190 0 ACGATGCGCG 0.993194 -111 AGGAGCGGCGCAGATGAGTCGCGCCGGTGACGA 39 209 0 CAGATGAGCG 0.919575 -92 CGCGCCGGTGACGATGCAGAGCGAAGCGATGAG 39 243 0 ACGATGCGCG 0.993194 -58 AGCGTCGCTGACCATGCGCGCCGGTGACGATGC 39 259 0 ACCATGCCCG 0.602191 -42 GGGCGCAGATCCCCCGCGACACGGTTGC 42 6 1 CAGATCCGCG 0.948188 -253 GCCTGGGAAACCGCTGCGAGCCGAAGTTGATCG 42 132 0 CCGCTGCCCG 0.983022 -127 TACGCGTCAGAAGATGCCGTGCGTTCCATCCTT 42 204 0 AAGATGCGCG 0.974043 -55 GATCGAGTGTCCGTTGCTGCGCGTGACAGAGTT 47 262 1 CCGTTGCGCG 0.949188 -39 CCATCGCGCCGCGCTGCGGTGCGGGTCATCGTC 53 47 1 GCGCTGCGCG 0.969761 -156 CCTCCTCACGCCGCTGCGCGGCGTGCATCGTCG 53 103 1 CCGCTGCGCG 0.9958 -100 CCTCCTCACGCCGCTGCGCGGCGTGCATCGTCG 53 161 1 CCGCTGCGCG 0.9958 -42 CGTGTCGACGACGATGCGGTGGGGGTACCACTC 56 18 1 ACGATGCGGG 0.942901 -47 GTGCCCCAACGCGATCCGCCGCGCCGATAAAGC 58 16 1 GCGATCCGCG 0.905898 -285 ACGACTCGGCACAATGCCAGCCGCACGCTGCAA 58 132 1 ACAATGCCCG 0.642986 -169 TGCCAGCCGCACGCTGCAAGGCCGACCAACGTG 58 146 1 ACGCTGCGCC 0.824829 -155 ******* *** Masking position 5 Map Score: 72.9089 Number of sites scoring better than the average of aligned sites = 3582 Number in coding regions = 3268 Number in noncoding regions = 314 Number of orfs with sites within 600 bp upstream = 252 Fraction of orfs with sites within 600 bp upstream = 0.0404754 Motif number 4 ACGACTGCCGGCAGGGTCAGGC 2 3 1 GACTGCCGGC 0.31823 -34 GGCGCTCATCCTGTGCTCCC 5 33 0 GGCGCTCATC 0.621868 -10 CGGCATCGTCGCCGGCGGTCATGGCGTCAC 7 51 0 GCCGGCGGTC 0.629237 -48 TCCTCATCGCTGCGCTCGGCATCGTCGCCG 7 67 0 TGCGCTCGGC 0.845746 -32 CACACGATACGGAAGGCAGCTGAA 9 5 0 GGAAGGCAGC 0.539883 -137 CGAGCGCGGCGAAGCCGGGCGTGGCGGGTC 10 28 1 GAAGCCGGGC 0.917838 -50 GTCGGCACCCGGAACCGAGCCGTTT 13 23 1 GGAACCGAGC 0.878259 -15 AACCGATACCGACACCGAGCTTGTCACCGA 15 112 1 GACACCGAGC 0.798834 -53 CCTACACTCAGCCAGTCGGCGTTCCGGCCG 16 29 1 GCCAGTCGGC 0.620626 -70 GGTCGCGGCAGGAGGCAAGCCAGTCTGCTA 17 164 0 GGAGGCAAGC 0.669184 -38 GGTGAGAAGGACCGGCCGGCGT 18 3 0 ACCGGCCGGC 0.451081 -298 ACGGCTCACCGGCGCTAGGCGCGCGTAGCG 18 247 1 GGCGCTAGGC 0.836926 -54 GTATCGCTGCGGCGCGCATCGTCGCCCGGA 19 25 0 GGCGCGCATC 0.738799 -132 ACCCTAACAGGGCCCCCGGCCAACCTGTTG 19 65 0 GGCCCCCGGC 0.747252 -92 GCCGGCCCCAGGAGGTCAGCGCC 21 4 0 GGAGGTCAGC 0.668788 -194 GCTGACCTCCTGGGGCCGGCAAAGCACCCG 21 14 1 TGGGGCCGGC 0.514588 -184 GGGCCGGCAAAGCACCCGGCGTCCCGTAGC 21 26 1 AGCACCCGGC 0.651541 -172 CTTCGACTCAGGAAGCGATCTCCGTCGCGA 21 96 1 GGAAGCGATC 0.360813 -102 GACGGAGACCGGAGCCGGTCACGGA 22 101 1 GGAGCCGGTC 0.905915 -15 GTTAGGCGGGGGAGCCGGTCGAACCAAGCC 23 12 1 GGAGCCGGTC 0.905915 -201 TGCCGGTGATGGTGGCTGGCGGCGTGGACA 23 57 0 GGTGGCTGGC 0.392094 -156 CACCATCACCGGCAGCCGGCGTTGTCTCGC 23 73 1 GGCAGCCGGC 0.952266 -140 TGTCTGCTGTGGCGTCGGGCGG 24 3 0 GGCGTCGGGC 0.80135 -99 GGTTTCAGCAGGCTCTGGGCAAGCATTGTT 24 55 1 GGCTCTGGGC 0.483321 -47 CTAGCGCACCGGCACCGGACGGACATCTGG 25 112 0 GGCACCGGAC 0.489765 -59 TTGCGCCGCGGAGCCCGGCACCGCCAGCA 26 10 1 GGAGCCCGGC 0.986601 -291 TTACCAACGAGGTAGCCAGCATGTGACGGG 26 166 1 GGTAGCCAGC 0.654945 -135 GTGCGGGATTGGAGGCGGGCGTT 27 4 0 GGAGGCGGGC 0.976478 -297 CGACACCCGATGTGCCCGGCTCTCAGCGAC 27 76 0 TGTGCCCGGC 0.825939 -225 CATGTGTCACTGCACCGGGCGACACCCGAT 27 95 0 TGCACCGGGC 0.919311 -206 CATGTCGTTGTGAGGCGGGCAACCGGTGCA 27 208 0 TGAGGCGGGC 0.858861 -93 ACGGTCGCTCGCAGCCGGGCACAACGAACA 27 249 1 GCAGCCGGGC 0.950263 -52 ACCACCGCGGGCAGCCCAGCCAACCAGACC 28 25 0 GCAGCCCAGC 0.869422 -83 CCGACCCGGCGGTGCCGGCCCTACCGCCGT 28 68 1 GGTGCCGGCC 0.35092 -40 GCGTCGCGTTGCCAGCCAGCGAGCATGCCG 29 146 1 GCCAGCCAGC 0.703029 -130 TCAGCACCTCGGCACCCGGCATGCTCGCTG 29 162 0 GGCACCCGGC 0.980798 -114 CGTCTTGTCGGCCGGTAGGCTGAGCAATTG 29 238 1 GCCGGTAGGC 0.43508 -38 CTCCCGCGCGCAGGCGAGCTGGATTCATA 30 10 1 GCAGGCGAGC 0.786547 -49 TGTCCCGTCAGACACCGATCCCTGCGTCAG 31 11 0 GACACCGATC 0.348363 -152 TGTCTGACGGGACACCGAGCGTAATCGGGG 31 27 1 GACACCGAGC 0.798834 -136 GGTCCCGTGAGGAGCGCGTC 31 153 1 GGAGCGCGTC 0.728704 -10 ACGTGCCGCGGGCACCCGTCCACACCGTCG 32 93 1 GGCACCCGTC 0.915333 -81 CGGTTTTCCAGGCGAGCGGCCGGTACTGGC 32 121 1 GGCGAGCGGC 0.465989 -53 CGAAGCCGGGCCCAACTGAAA 34 2 1 GAAGCCGGGC 0.917838 -28 CGTGCCTTGGTGCACGGGGCTCGCCCGTTG 35 27 0 TGCACGGGGC 0.745504 -251 CGTGCACCAAGGCACGGGGCTCGCCGATCG 35 41 1 GGCACGGGGC 0.952179 -237 ACCGGGCCTATGCACCCGGCTCGCAAACAT 35 177 0 TGCACCCGGC 0.925317 -101 TATCCAAACCGGCGGGCGGCCGTACCGGGC 35 200 0 GGCGGGCGGC 0.622342 -78 CGCATTGACATGCGCCCATCCGGCGTTGAC 37 49 1 TGCGCCCATC 0.637709 -252 TCGCGCCATGGACGGCAGGCTTTGCACGGG 37 95 1 GACGGCAGGC 0.683683 -206 AGCCGCATCCGGCGGTCGGCGACGGCCAAT 37 254 1 GGCGGTCGGC 0.936228 -47 GATTGTCGGGGGCGCTCGGCGAGGCAGGTC 41 25 0 GGCGCTCGGC 0.968638 -88 GCAACATTCGGCCACCCAGCGCTTCCGACA 41 82 1 GCCACCCAGC 0.842535 -31 GCGCCAGTGTTGCGGCGAGCGGAAGCTTTG 42 92 1 TGCGGCGAGC 0.874931 -167 GAAGCTTTGGTGCGGCCGGCGATCAACTTC 42 113 1 TGCGGCCGGC 0.957124 -146 ACATGCGGTAGGCACCAGGCGGAGGAACC 44 97 1 GGCACCAGGC 0.920506 -19 CTAGCGTACCGGCGGCAAGCCAGCCTCGAC 46 11 0 GGCGGCAAGC 0.874767 -86 CACCTGGGCAGGTGCTGAGCCACAGCCTTC 47 78 1 GGTGCTGAGC 0.571178 -223 CGCGAATAGTGCTGGTCGGCATTCAACACT 47 126 1 GCTGGTCGGC 0.34372 -175 CCTGCCGGCCGACACCGGGCAAGCGGTAGG 47 203 0 GACACCGGGC 0.92294 -98 CCAGCCTGACGGCGCGGATCGAGTGTCCGT 47 246 1 GGCGCGGATC 0.739616 -55 GAATCAGCCCGACAGGAGGCGCA 50 95 1 GACAGGAGGC 0.211359 -13 GGGCTCGGGTGGTACCCATCGCGCCGCGCT 53 32 1 GGTACCCATC 0.305777 -171 GACCCGCACCGCAGCGCGGCGCGATGGGTA 53 44 0 GCAGCGCGGC 0.794434 -159 GGCGTGAGGAGGAGCCGAGCAGTCAAGCAC 53 85 0 GGAGCCGAGC 0.958928 -118 GACGATGCACGCCGCGCAGCGGCGTGAGGA 53 105 0 GCCGCGCAGC 0.530602 -98 GGCGTGCATCGTCGCCGAGCTGTGTTGGAC 53 122 1 GTCGCCGAGC 0.690362 -81 GGCGTGAGGAGGAGCCGAGCAGTCCAACAC 53 143 0 GGAGCCGAGC 0.958928 -60 GACGATGCACGCCGCGCAGCGGCGTGAGGA 53 163 0 GCCGCGCAGC 0.530602 -40 GGCGTGCATCGTCGCCGAGCTAGGTTATGG 53 180 1 GTCGCCGAGC 0.690362 -23 TGAATTCTTGGACGCGCGGCTGGTGTC 54 8 0 GACGCGCGGC 0.546885 -53 CATCGTCGTCGACACGGGGCATT 56 4 0 GACACGGGGC 0.756311 -61 CCCGTGATCAGGTACCAAGCCCCTCGATCC 57 116 1 GGTACCAAGC 0.309612 -185 ATCCTGCACCTGGGCCGGGCTGTGCGGGCA 57 142 1 TGGGCCGGGC 0.626274 -159 TGACGGTTACGGTGGCCGGCAACGGAGATC 58 100 0 GGTGGCCGGC 0.789401 -201 CCTTGCAGCGTGCGGCTGGCATTGTGCCGA 58 137 0 TGCGGCTGGC 0.470089 -164 TGGCAGAGGTTGAGCTGGGCAAAGTCGTCA 58 245 0 TGAGCTGGGC 0.58854 -56 CGCGCGACGATACAGCCGGCATGGCAGAGG 58 266 0 TACAGCCGGC 0.529494 -35 CAGAGTCAGCGCAGGCCGGCGCGCCCCCTA 59 50 0 GCAGGCCGGC 0.816493 -207 CCCGCGACGGGAAGCCGGTCTGGATCAGAC 59 183 0 GAAGCCGGTC 0.600787 -74 ACGTTCGCGATGCGCCGGTCTGAGGTTCCT 59 213 1 TGCGCCGGTC 0.832239 -44 ********** Masking position 10 Map Score: 115.395 Number of sites scoring better than the average of aligned sites = 34995 Number in coding regions = 32529 Number in noncoding regions = 2466 Number of orfs with sites within 600 bp upstream = 1099 Fraction of orfs with sites within 600 bp upstream = 0.176518 Motif number 5 ATGCGCCGCTCCTCCTCATCGCTGCGCT 7 81 0 CTCCTCCTCA 0.99659 -18 CGTATTCGGCTCCTCGTCAAAATCATGTA 11 49 0 CTCCTCGTCA 0.960798 -19 CGTCGATGGACACCTCTTCAACCAGGGTCT 15 141 0 CACCTCTTCA 0.804395 -24 ACGCCGGCCGGTCCTTCTCACCTAGTGCCG 18 11 1 GTCCTTCTCA 0.802453 -290 TCGTTATGACTACCTCCTCAGCGCACCCGA 26 276 0 TACCTCCTCA 0.886381 -25 ACAACGAACACTCCTGCTCTGCCGCGCCGA 27 269 1 CTCCTGCTCT 0.937924 -32 ATCTGCGCCGCTCCTCCTCATCGCTTCGCT 39 15 1 CTCCTCCTCA 0.99659 -286 ATCTGCGCCGCTCCTGCTCATCGCTTCGCT 39 68 1 CTCCTGCTCA 0.993978 -233 ATCTGCGCCGCTCCTGCTCATCGCTTCGCT 39 121 1 CTCCTGCTCA 0.993978 -180 ATCTGCGCCGCTCCTGCTCATCGCTTCGCT 39 174 1 CTCCTGCTCA 0.993978 -127 ATCTGCGCCGCTCCTCCTCATCGCTTCGCT 39 227 1 CTCCTCCTCA 0.99659 -74 TGTGGCTCAGCACCTGCCCAGGTGTTGATT 47 72 0 CACCTGCCCA 0.838846 -229 GACTGCTCGGCTCCTCCTCACGCCGCTGCG 53 91 1 CTCCTCCTCA 0.99659 -112 GACTGCTCGGCTCCTCCTCACGCCGCTGCG 53 149 1 CTCCTCCTCA 0.99659 -54 GCAGCGGGTGCTCCTCCTCGGACGCCGCGA 59 149 1 CTCCTCCTCG 0.975401 -108 CGGTCTGAGGTTCCTTCTCACCATCCCGGA 59 228 1 TTCCTTCTCA 0.828558 -29 ********** Masking position 5 Map Score: 36.1001 Number of sites scoring better than the average of aligned sites = 127 Number in coding regions = 59 Number in noncoding regions = 68 Number of orfs with sites within 600 bp upstream = 49 Fraction of orfs with sites within 600 bp upstream = 0.00787022 Motif number 6 ATGCGCCGCTCCTCCTCATCGC 7 87 0 GCGCCGCTCC 0.990743 -12 ACGCCCGGCTTCGCCGCGCTCGCGATCGCT 10 20 0 TCGCCGCGCT 0.917718 -58 TCCGGGCGACGATGCGCGCCGCAGCGATAC 19 25 1 GATGCGCGCC 0.670052 -132 GTCTGCTGTGGCGTCGGGCGG 24 2 0 GCGTCGGGCG 0.658169 -100 GGCCCTACCGCCGTCGCGACTATGCTGAGT 28 84 1 CCGTCGCGAC 0.641846 -24 GACGTGGCCGGAGCCGCTCCCGGCGGGATG 29 43 1 GAGCCGCTCC 0.960385 -233 TGCGGCCACTGCGTCGCGTTGCCAGCCAGC 29 136 1 GCGTCGCGTT 0.713538 -140 GCGAGATAGCTCGTGGCGCCAGCT 32 5 0 TCGTGGCGCC 0.610168 -169 GGCGGCTCGGTCGTCGCGCTATATCGGGCC 32 153 0 TCGTCGCGCT 0.928664 -21 TATCATTACTTCGTCGAGCCACAACGACCG 35 110 0 TCGTCGAGCC 0.537251 -168 CGGGCGGGTACAGTCGCGCCATGGACGGCA 37 82 1 CAGTCGCGCC 0.940369 -219 ACTCATCTGCGCCGCTCCTCCTCATCGC 39 9 1 GCGCCGCTCC 0.990743 -292 CCTCCTCATCGCTTCGCTCTGCATCGTCAC 39 27 1 GCTTCGCTCT 0.859909 -274 CGGCGCAGATGAGTCGCGCCGGTGACGATG 39 48 0 GAGTCGCGCC 0.986577 -253 CGACTCATCTGCGCCGCTCCTGCTCATCGC 39 62 1 GCGCCGCTCC 0.990743 -239 CCTGCTCATCGCTTCGCTCTGCATCGTCAC 39 80 1 GCTTCGCTCT 0.859909 -221 CGGCGCAGATGAGTCGCGCCGGTGACGATG 39 101 0 GAGTCGCGCC 0.986577 -200 CGACTCATCTGCGCCGCTCCTGCTCATCGC 39 115 1 GCGCCGCTCC 0.990743 -186 CCTGCTCATCGCTTCGCTCTGCATCGTCAC 39 133 1 GCTTCGCTCT 0.859909 -168 CGGCGCAGATGAGTCGCGCCGGTGACGATG 39 154 0 GAGTCGCGCC 0.986577 -147 CGACTCATCTGCGCCGCTCCTGCTCATCGC 39 168 1 GCGCCGCTCC 0.990743 -133 CCTGCTCATCGCTTCGCTCTGCATCGTCAC 39 186 1 GCTTCGCTCT 0.859909 -115 CGGCGCAGATGAGTCGCGCCGGTGACGATG 39 207 0 GAGTCGCGCC 0.986577 -94 CGACTCATCTGCGCCGCTCCTCCTCATCGC 39 221 1 GCGCCGCTCC 0.990743 -80 CCTCCTCATCGCTTCGCTCTGCATCGTCAC 39 239 1 GCTTCGCTCT 0.859909 -62 ACGGACACTCGATCCGCGCCGTCAGGCTGG 47 246 0 GATCCGCGCC 0.912099 -55 GGAAGTTTAAGCGTCGCGCCGCTGACCCGC 50 28 0 GCGTCGCGCC 0.996928 -80 GGTACCCATCGCGCCGCGCTGCGGTGCGGG 53 42 1 GCGCCGCGCT 0.988081 -161 CCAACGCGATCCGCCGCGCCGATAAAGCTA 58 21 1 CCGCCGCGCC 0.98351 -280 GTGCGATGTGGCGTCGTTCGTTGGCACCGG 58 52 0 GCGTCGTTCG 0.468623 -249 GCATTGTGCCGAGTCGTGCTGACGGTTACG 58 119 0 GAGTCGTGCT 0.506882 -182 GCCGGCTGTATCGTCGCGCGGTTAGGCTCA 58 276 1 TCGTCGCGCG 0.867933 -25 TCAGCGCAGGCCGGCGCGCCCCCTATTCTG 59 45 0 CCGGCGCGCC 0.921092 -212 GGATCAGACCCCGTCGCGGCGTCCGAGGAG 59 162 0 CCGTCGCGGC 0.726484 -95 ********** Masking position 6 Map Score: 78.405 Number of sites scoring better than the average of aligned sites = 5448 Number in coding regions = 4914 Number in noncoding regions = 534 Number of orfs with sites within 600 bp upstream = 374 Fraction of orfs with sites within 600 bp upstream = 0.0600707 Motif number 7 ACAGGCTACCGCCTGACCCTGCCGGCAGTC 2 13 0 GCCTGACCCT 0.604 -24 TCAGGCGGTAGCCTGTCACG 2 27 1 GCCTGTCACG 0.507071 -10 GCGCGCCCGACCCCCACACGATACGGAAGG 9 19 0 CCCCCACACG 0.855798 -123 AGACCGTGATCCCCCTTCCGCGGTCATGGC 12 26 1 CCCCCTTCCG 0.586915 -34 CCGGTCGGCACCCGGAACCGAGCCGTTT 13 20 1 CCCGGAACCG 0.89275 -18 GGCCCCTACCCTAATGGTCGAG 14 52 0 CCCCTACCCT 0.209885 -12 AGGTCCCGTACCGGCACCCTAACAGGGCCC 19 80 0 CCGGCACCCT 0.400352 -77 CGGCTCCGGTCTCCGTCCCGGGGGGTGTTG 22 88 0 CTCCGTCCCG 0.445605 -28 GGAGACCGGAGCCGGTCACGGA 22 104 1 GCCGGTCACG 0.95345 -12 GCCACCATCACCGGCAGCCGGCGTTGTCTC 23 71 1 CCGGCAGCCG 0.633115 -142 ACAATGCTTGCCCAGAGCCTGCTGAAACCA 24 54 0 CCCAGAGCCT 0.378584 -48 CGCCGCGGAGCCCGGCACCGCCAGCAGTGC 26 14 1 CCCGGCACCG 0.631234 -287 AAGCCGATCTGACCGACCCGGAGAAGCAGA 26 246 0 GACCGACCCG 0.658386 -55 CGTGCGATGTGCCCGACCCTCGGTGCGCAC 27 138 1 GCCCGACCCT 0.934252 -163 CACACGGTCGCTCGCAGCCGGGCACAACGA 27 246 1 CTCGCAGCCG 0.533298 -55 CGGCGGTAGGGCCGGCACCGCCGGGTCGGC 28 67 0 GCCGGCACCG 0.737333 -41 CACCGACGTGGCCGGAGCCGCTCCCGGCGG 29 39 1 GCCGGAGCCG 0.987421 -237 TAGGCAGACCGCCCCACCCGTATGATCGCT 29 107 1 GCCCCACCCG 0.974964 -169 CATCCGGCGACCCGCAACCGCAGGTCACGT 29 201 0 CCCGCAACCG 0.852537 -75 GGACTGCGCACCCGGTCCCGTGAGGAGCGC 31 140 1 CCCGGTCCCG 0.980383 -23 ATAGCGCGACGACCGAGCCGCCC 32 161 1 GACCGAGCCG 0.557995 -13 GATCGGCGAGCCCCGTGCCTTGGTGCACGG 35 40 0 CCCCGTGCCT 0.795155 -238 CTCGGCGGGAGCCGCATCCGGCGGTCGGCG 37 245 1 GCCGCATCCG 0.879244 -56 GATGAGTCGCGCCGGTGACGATGCAGAGCG 39 41 0 GCCGGTGACG 0.930634 -260 ACTCATCTGCGCCGCTCCTGCTCATCGCTT 39 64 1 GCCGCTCCTG 0.732415 -237 GATGAGTCGCGCCGGTGACGATGCAGAGCG 39 94 0 GCCGGTGACG 0.930634 -207 ACTCATCTGCGCCGCTCCTGCTCATCGCTT 39 117 1 GCCGCTCCTG 0.732415 -184 GATGAGTCGCGCCGGTGACGATGCAGAGCG 39 147 0 GCCGGTGACG 0.930634 -154 ACTCATCTGCGCCGCTCCTGCTCATCGCTT 39 170 1 GCCGCTCCTG 0.732415 -131 GATGAGTCGCGCCGGTGACGATGCAGAGCG 39 200 0 GCCGGTGACG 0.930634 -101 GACCATGCGCGCCGGTGACGATGCAGAGCG 39 253 0 GCCGGTGACG 0.930634 -48 CAGGTGCTGAGCCACAGCCTTCGGCGACGG 47 86 1 GCCACAGCCT 0.409646 -215 CGTTGGGCACGCCGGACTCGCGGCACCTAC 47 178 1 GCCGGACTCG 0.761166 -123 GTGTCGGCCGGCAGGACCCGAAAGACATCC 47 218 1 GCAGGACCCG 0.695172 -83 CGCCCCAGCCTAAGGAAGTAG 48 2 1 GCCCCAGCCT 0.866033 -48 GTTATCGGCTGCCGCACACTACTTCCTTAG 48 20 0 GCCGCACACT 0.840543 -30 GCGCCGCTGACCCGCTCACGCGGTTCCTCG 50 13 0 CCCGCTCACG 0.896637 -95 GGCCGGAGACTATCGCAACGG 51 2 1 GCCGGAGACT 0.832534 -29 TACCACCCGAGCCCCCGCCGTCTAAGCTTT 53 16 0 GCCCCCGCCG 0.839887 -187 CCGCACCCTTGCCGGATCCTTGATGAATTC 54 31 0 GCCGGATCCT 0.726534 -30 CAGTGTCAGCCCGCACCCTTGCCGGATCC 54 42 0 CCCGCACCCT 0.927861 -19 GGCCAGTAGCGCCCGACCCGAGCAATTCTA 55 24 0 GCCCGACCCG 0.982478 -49 GCGCTACTGGCCCGGTCACGCCTACGAGGG 55 42 1 CCCGGTCACG 0.92587 -31 CACAATGCCAGCCGCACGCTGCAAGGCCGA 58 141 1 GCCGCACGCT 0.604754 -160 CTGGATCAGACCCCGTCGCGGCGTCCGAGG 59 164 0 CCCCGTCGCG 0.62912 -93 ********** Masking position 9 Map Score: 58.1661 Number of sites scoring better than the average of aligned sites = 21543 Number in coding regions = 20295 Number in noncoding regions = 1248 Number of orfs with sites within 600 bp upstream = 758 Fraction of orfs with sites within 600 bp upstream = 0.121748 Motif number 8 CGAATGGCCCGGGGTGCAACGATAGAAGTTG 1 52 1 GGGTGCAACG 0.739764 -42 GGCGCTCATCCTGTGCTCCCT 5 32 0 GGGCTCATCC 0.583603 -11 CGAGCGCATCCGACTGACCTT 6 1 1 CGGCGCATCC 0.951558 -94 GCGACGATGCCGAGCGCAGCGATGAGGAGGA 7 69 1 CGGCGCAGCG 0.786276 -30 CGTGTATTGGCGCGCCCGACCCCCACACGAT 9 27 0 CGGCCCGACC 0.502191 -115 CTCGGTTCCGGGTGCCGACCGGTAATCGTTG 13 11 0 GGGCCGACCG 0.926058 -27 TGGTTGAAGAGGTGTCCATCGACGGAAT 15 147 1 GGGTCCATCG 0.890003 -18 TGCCTCCTGCCGCGACCATCCGATAGCTTGG 17 177 1 CGGACCATCC 0.619714 -25 CGACGCTACGCGCGCCTAGCGCCGGTGAGCC 18 249 0 CGGCCTAGCG 0.498479 -52 GGCGGTCGAGCCTATCCGGGCGACGAT 19 7 1 CGGCCTATCC 0.842024 -150 GTATCGCTGCGGCGCGCATCGTCGCCCGGAT 19 24 0 GGGCGCATCG 0.956448 -133 GCAGCGATACCTTGCCCAACCAACAGGTTGG 19 45 1 CTGCCCAACC 0.285224 -112 TCCAATGGACGGCGCAGACCGGGCCGCTTCG 21 70 1 GGGCAGACCG 0.711211 -128 ACGGACATCTGGGGTCCAACCCCCACAGCTA 25 93 0 GGGTCCAACC 0.839581 -78 AAGTCCGTAAGGAGCAGAACCGAC 25 157 1 GGGCAGAACC 0.575371 -14 CGCTGAGAGCCGGGCACATCGGGTGTCGCCC 27 78 1 CGGCACATCG 0.865061 -223 CACCGAGGGTCGGGCACATCGCACGGCCACA 27 132 0 CGGCACATCG 0.865061 -169 GGCTCAAATTGGTGCGCACCGAGGGTCGGGC 27 148 0 GGGCGCACCG 0.962586 -153 GTCGTTGTGAGGCGGGCAACCGGTGCACCTC 27 204 0 GGGGGCAACC 0.507694 -97 CGCTCGCAGCCGGGCACAACGAACACTCCTG 27 254 1 CGGCACAACG 0.798387 -47 CCGCGCCTACCCGCGGTCTGGT 28 2 1 CGGCCTACCC 0.862412 -106 TGTTGACCGGTGTGCCGACCCGGCGGTGCCG 28 54 1 TGGCCGACCC 0.624648 -54 GATGACGTGCCGCGGGCACCCGTCCACACCG 32 89 1 CGGGGCACCC 0.627457 -85 CGAAGCCGGGCCCAACTGAAAGGCAGG 34 7 1 CGGCCCAACT 0.437149 -23 GCTCGCCGATCGAGTCGACCGGGGGTCACTG 35 59 1 CGGTCGACCG 0.696065 -219 CGCATTGACATGCGCCCATCCGGCGTTGACG 37 49 1 TGGCCCATCC 0.834617 -252 GGTGTCCAACCTACGGTGTAG 39 290 0 GGGTCCAACC 0.839583 -11 CAACGCCTCAGGTGTCGATCCTAAAGCGCGG 40 54 1 GGGTCGATCC 0.703887 -21 CGAGGCAGGTCGAGCACACCCCGAA 41 5 0 CGGCACACCC 0.887518 -108 CCTGCCTCGCCGAGCGCCCCCGACAATCGGG 41 27 1 CGGCGCCCCC 0.628869 -86 GGGCGCAGATCCCCCGCGACAC 42 2 1 GGGCAGATCC 0.686933 -257 TCCTCCGCCTGGTGCCTACCGCATGTCTGAC 44 92 0 GGGCCTACCG 0.874537 -24 GCGAGTCCGGCGTGCCCAACGGCCAACTCTA 47 168 0 CGGCCCAACG 0.953398 -133 CCAGCCTGACGGCGCGGATCGAGTGTCCGTT 47 246 1 GGGCGGATCG 0.859892 -55 ATCATCGAGCCTACCGCTGGCGACCT 49 25 0 CGGCCTACCG 0.856786 -16 GGCCGGAGACTATCGCAACGGCAGT 51 5 1 GGGACTATCG 0.217674 -26 GGGCTCGGGTGGTACCCATCGCGCCGCGCTG 53 32 1 GGACCCATCG 0.418142 -171 GCCGCTGCGCGGCGTGCATCGTCGCCGAGCT 53 112 1 GGGTGCATCG 0.821497 -91 GCCGCTGCGCGGCGTGCATCGTCGCCGAGCT 53 170 1 GGGTGCATCG 0.821497 -33 GTGCGGGCAAGGCGTCCATCCAGCGCCAGCA 57 163 1 GGGTCCATCC 0.894438 -138 CGGTGAGCGAAGGGCGCATCCCTCGTACCGA 57 212 1 AGGCGCATCC 0.465931 -89 GGATGTGAGCCTAACCGCGCGACGAT 58 285 0 TGGCCTAACC 0.323621 -16 AGCGCAGGCCGGCGCGCCCCCTATTCTGGAC 59 42 0 GGGCGCCCCC 0.691244 -215 ACGTTGACTCTGCGTCCACCGTGTGGGCTAC 59 102 0 TGGTCCACCG 0.542451 -155 ** ******** Masking position 10 Map Score: 58.3801 Number of sites scoring better than the average of aligned sites = 8812 Number in coding regions = 8219 Number in noncoding regions = 593 Number of orfs with sites within 600 bp upstream = 474 Fraction of orfs with sites within 600 bp upstream = 0.0761323 Motif number 9 GGGACTACCTCGACAAGACGACGAATGGCC 1 31 1 CGACAAGACG 0.685347 -63 ACGACTGCCGGCAGGGTCAGG 2 2 1 CGACTGCCGG 0.582819 -35 GATTACCGGTCGGCACCCGGAACCGAGCCG 13 15 1 CGGCACCCGG 0.848842 -23 GATTGCCTTTCGCCAGCAGGTCTCGACAGC 15 68 0 CGCCAGCAGG 0.904633 -97 AAACCGATACCGACACCGAGCTTGTCACCG 15 111 1 CGACACCGAG 0.800421 -54 AGGTCAACGGCGCTAGGGCGT 16 2 0 CGCTAGGGCG 0.367797 -97 GGACTGTCCGCGACGCGACGTGGCCCCTGG 17 117 0 CGACGCGACG 0.485385 -85 CGGATGGTCGCGGCAGGAGGCAAGCCAGTC 17 169 0 CGGCAGGAGG 0.838688 -33 TCAACGCCAACCCCAAGAGGACGGCAGACG 18 51 1 CCCCAAGAGG 0.400317 -250 CAAACCACCGCGACACGGCGTCTGTCACAC 18 112 1 CGACACGGCG 0.964439 -189 CACACAACACCGACACTGAGACATAAAGGT 18 163 1 CGACACTGAG 0.395541 -138 CAAAAGCTCTCGACACGCCGTGCGAAAAGG 18 194 0 CGACACGCCG 0.932294 -107 GCTTTGCCGGCCCCAGGAGGTCAGCGCC 21 9 0 CCCCAGGAGG 0.767049 -189 GGCACCACAGTCAGGGCCATGCGA 21 184 0 CCACAGTCAG 0.109478 -14 CCACCATCACCGGCAGCCGGCGTTGTCTCG 23 72 1 CGGCAGCCGG 0.876342 -141 CACTGTGGGCCCACAGGGGGCGCCTTGGTC 23 152 0 CCACAGGGGG 0.930956 -61 CCCTGTGGGCCCACAGTGGGCGGTCTGGCG 23 164 1 CCACAGTGGG 0.650557 -49 CCGGTCAACACCACCGCGGGCAGCCCAGCC 28 34 0 CCACCGCGGG 0.70623 -74 ACCGGTGTGCCGACCCGGCGGTGCCGGCCC 28 59 1 CGACCCGGCG 0.829971 -49 TCAGCATAGTCGCGACGGCGGTAGGGCCGG 28 82 0 CGCGACGGCG 0.544646 -26 GTCAGCACCTCGGCACCCGGCATGCTCGCT 29 163 0 CGGCACCCGG 0.848842 -113 GCCTACCGGCCGACAAGACGACTACTACAT 29 228 0 CGACAAGACG 0.685347 -48 GAATCCAGCTCGCCTGCGCGCGGGAG 30 7 0 CGCCTGCGCG 0.584223 -52 ATTGACGTCCCGCCACCACGTCCGGCGTTC 31 95 0 CGCCACCACG 0.849592 -68 CCGATCGAGTCGACCGGGGGTCACTGCAGC 35 64 1 CGACCGGGGG 0.892723 -214 GGTTTGGATACGACAGCGAGTAGTAAGCCG 35 220 1 CGACAGCGAG 0.835164 -58 AGCGAACTTGCGCCAGAGCGCCGTACGACG 37 187 1 CGCCAGAGCG 0.530238 -114 TGGCCGTCGCCGACCGCCGGATGCGGCTCC 37 252 0 CGACCGCCGG 0.804922 -49 CGAGCGCCCCCGACAATCGGGTCGCCATCT 41 37 1 CGACAATCGG 0.391238 -76 ACCGCGGCCGCGACAAGCCGACAAATCGAG 46 56 1 CGACAAGCCG 0.77833 -41 TCCTGCCGGCCGACACCGGGCAAGCGGTAG 47 204 0 CGACACCGGG 0.968403 -97 TGGGCCAGGTCGCCAGCGGTAGGCTCGATG 49 19 1 CGCCAGCGGT 0.383247 -22 AGAATCAGCCCGACAGGAGGCGCA 50 94 1 CGACAGGAGG 0.93491 -14 ATGACCCGCACCGCAGCGCGGCGCGATGGG 53 46 0 CCGCAGCGCG 0.755505 -157 GCATCGTCGTCGACACGGGGCATT 56 5 0 CGACACGGGG 0.973134 -60 TAGGCTATGACGACGCGCGGAAGAATATGC 57 29 1 CGACGCGCGG 0.667716 -272 CAGCGGTGCCCCAACGCGATCCGCCGCG 58 9 1 CCCCAACGCG 0.574519 -292 CCACCGTAACCGTCAGCACGACTCGGCACA 58 115 1 CGTCAGCACG 0.338796 -186 TGCGAGTAGCCCACACGGTGGACGCAGAGT 59 97 1 CCACACGGTG 0.2986 -160 CCTCGGACGCCGCGACGGGGTCTGATCCAG 59 164 1 CGCGACGGGG 0.62175 -93 ********** Masking position 1 Map Score: 34.109 Number of sites scoring better than the average of aligned sites = 14476 Number in coding regions = 13363 Number in noncoding regions = 1113 Number of orfs with sites within 600 bp upstream = 767 Fraction of orfs with sites within 600 bp upstream = 0.123193 Motif number 10 TTCTATCGTTGCACCCCGGGCCATTCGTCGTC 1 47 0 GCACCGGGCC 0.981674 -47 ACGACTGCCGGCAGGGTCAGGCGGTAGC 2 7 1 GCCGAGGGTC 0.679893 -30 GATCAGCAGCGCAACCATGGCCCAGGTCTGGA 3 37 1 GCACATGGCC 0.760808 -65 TACTTAGGTAGCATGGCATGCC 4 77 1 GCAGCATGCC 0.687171 -12 AGCTCACACTACCGCCGGGGCCACAATGGCTT 11 13 0 ACCCGGGGCC 0.753305 -55 ACACAATATGGCATCGAGTGCCGAAATGGAAG 15 21 0 GCACAGTGCC 0.982868 -144 GGACACCTCTTCAACCAGGGTCTCGGTGACAA 15 132 0 TCACAGGGTC 0.774513 -33 CCTGACCGATGCACCAGGGGCCACGTCGCGTC 17 104 1 GCACGGGGCC 0.989201 -98 CCGGTCCTTCTCACCTAGTGCCGGCAATACTG 18 18 1 TCACAGTGCC 0.912831 -283 TTGTTCCGGATCACCTGGTGTCTGGCTCACTT 18 83 0 TCACGGTGTC 0.869318 -218 GTCCCTTTTCGCACGGCGTGTCGAGAGCTTTT 18 191 1 GCAGCGTGTC 0.874462 -110 GGCCGGCAAAGCACCCGGCGTCCCGTAGCGAA 21 27 1 GCACGGCGTC 0.876724 -171 AATGGACGGCGCAGACCGGGCCGCTTCGACTC 21 73 1 GCAACGGGCC 0.661625 -125 TGCTGTGCGAGCAGCCAATGCCAATGCCGTTT 22 58 0 GCACAATGCC 0.867303 -58 ATAAGTAGCATCAAGGGGTGCCC 23 200 1 TCAGGGTGCC 0.856465 -13 CACCGGACGGACATCTGGGGTCCAACCCCCAC 25 98 0 ACACGGGGTC 0.760106 -73 GCCCGGCACCGCCAGCAGTGCCTCGCGGATGC 26 23 1 GCCGAGTGCC 0.86504 -278 AGAGCCGGGCACATCGGGTGTCGCCCGGTGCA 27 83 1 ACACGGTGTC 0.777257 -218 AAATTGGTGCGCACCGAGGGTCGGGCACATCG 27 142 0 GCACAGGGTC 0.949538 -159 GAGCGGAGGTGCACCGGTTGCCCGCCTCACAA 27 199 1 GCACGTTGCC 0.860336 -102 CTGGGACTGCGCACCCGGTCCCGTGAGGAGCG 31 137 1 GCACGGTCCC 0.804407 -26 CGAGCGAAAGGGATGACGTGCCGCGGGCACCC 32 78 1 GGAGCGTGCC 0.599694 -96 TTTCATCAACGCCTCAGGTGTCGATCCTAAAG 40 48 1 GCCCGGTGTC 0.926985 -27 AGGCTGTGGCTCAGCACCTGCCCAGGTGTTGA 47 74 0 TCACCCTGCC 0.357897 -227 CTGACGGCGCGGATCGAGTGTCCGTTGCTGCG 47 251 1 GGACAGTGTC 0.616873 -50 TCTTGGACGCGCGGCTGGTGTC 54 1 0 GCGCGGTGTC 0.744303 -60 GCGTGACCGGGCCAGTAGCGCCCGACCCGAGC 55 31 0 GCCGAGCGCC 0.55782 -42 CAGCAACGTCGCATCTAATGCCCCGGTGAGCG 57 189 1 GCACAATGCC 0.867303 -112 GGACGCAGAGTCAGCGCAGGCCGGCGCGCCCC 59 53 0 TCACCAGGCC 0.529077 -204 TGCTTCATGTGCAGCGGGTGCTCCTCCTCGGA 59 139 1 GCACGGTGCT 0.735124 -118 *** * ****** Masking position 12 Map Score: 28.8504 Number of sites scoring better than the average of aligned sites = 7053 Number in coding regions = 6598 Number in noncoding regions = 455 Number of orfs with sites within 600 bp upstream = 386 Fraction of orfs with sites within 600 bp upstream = 0.0619981 Motif number 11 AGACCTAACCGGCGGCCCCGAAGCGTAGTG 4 14 1 GGCGGCCCCG 0.734854 -75 GAGAACCAGAGGGAGCACAGGATGAGCGCC 5 23 1 GGGAGCACAG 0.770698 -20 TCGGTGTGACAGACGCCGTGTCGCGGTGGT 18 115 0 AGACGCCGTG 0.213221 -186 GCGACGCTACGCGCGCCTAGCGCCGGTGAG 18 251 0 GCGCGCCTAG 0.299339 -50 CAGGTTGGCCGGGGGCCCTGTTAGGGTGCC 19 68 1 GGGGGCCCTG 0.953849 -89 ACGGGACGCCGGGTGCTTTGCCGGCCCCAG 21 23 0 GGGTGCTTTG 0.780307 -175 GCGCAGACCGGGCCGCTTCGACTCAGGAAG 21 81 1 GGCCGCTTCG 0.633076 -117 GGCCCACAGGGGGCGCCTTGGTCAGCGGTC 23 145 0 GGGCGCCTTG 0.957855 -68 CGCCCACTGTGGGCCCACAGGGGGCGCCTT 23 156 0 GGGCCCACAG 0.381999 -57 GGCCCACAGTGGGCGGTCTGGCGTTGCCCA 23 171 1 GGGCGGTCTG 0.71886 -42 AGTGCCTCGCGGATGCCCTGATCGTCGTTG 26 39 1 GGATGCCCTG 0.867725 -262 ATCGGCTTTCGGGTGCGCTGAGGAGGTAGT 26 268 1 GGGTGCGCTG 0.835713 -33 CACCACCGCGGGCAGCCCAGCCAACCAGAC 28 26 0 GGCAGCCCAG 0.70357 -82 CATACGGGTGGGGCGGTCTGCCTACTACAA 29 101 0 GGGCGGTCTG 0.71886 -175 GCGACGCAGTGGCCGCAGCGATCATACGGG 29 123 0 GGCCGCAGCG 0.662509 -153 CGAGCATGCCGGGTGCCGAGGTGCTGACAG 29 165 1 GGGTGCCGAG 0.801182 -111 TCACGGGACCGGGTGCGCAGTCCCAGCGGT 31 133 0 GGGTGCGCAG 0.721186 -30 GAGTCCTGAGGGCTGCAGTGACCCCCGGTC 35 75 0 GGCTGCAGTG 0.592713 -203 GCTAAATTAGGGCAGCCTTGCCTATCATTA 35 132 0 GGCAGCCTTG 0.621958 -146 TTTGCGAGCCGGGTGCATAGGCCCGGTACG 35 180 1 GGGTGCATAG 0.619888 -98 GGCTTTGCACGGGCGCACTGGTGCCCAGGG 37 112 1 GGGCGCACTG 0.970485 -189 AGGGAGTATTGGACGCTTTGAAATCCTGCC 37 138 1 GGACGCTTTG 0.825115 -163 CGCCGTCGTACGGCGCTCTGGCGCAAGTTC 37 190 0 CGGCGCTCTG 0.581303 -111 CGATTGTCGGGGGCGCTCGGCGAGGCAGGT 41 26 0 GGGCGCTCGG 0.876633 -87 TCGGTATGTCGGAAGCGCTGGGTGGCCGAA 41 88 0 GGAAGCGCTG 0.575992 -25 TGCGGCGAGCGGAAGCTTTGGTGCGGCCGG 42 102 1 GGAAGCTTTG 0.486765 -157 GACGCACCGCGGGGGCAATGGTATTCTCAC 43 19 1 GGGGGCAATG 0.343308 -64 TGAAATGCTAGGAGGCTCTGCGGT 43 69 1 GGAGGCTCTG 0.811009 -14 CTTAGACGGCGGGGGCTCGGGTGGTACCCA 53 20 1 GGGGGCTCGG 0.694921 -183 GGCGCTGGATGGACGCCTTGCCCGCACAGC 57 160 0 GGACGCCTTG 0.893104 -141 TTCCCGTGGTGGACGCAGAGTCAGCGCAGG 59 65 0 GGACGCAGAG 0.731876 -192 CCCACACGGTGGACGCAGAGTCAACGTGTA 59 106 1 GGACGCAGAG 0.731876 -151 GCTCCTCCTCGGACGCCGCGACGGGGTCTG 59 158 1 GGACGCCGCG 0.797138 -99 ********** Masking position 10 Map Score: 22.5703 Number of sites scoring better than the average of aligned sites = 8490 Number in coding regions = 7897 Number in noncoding regions = 593 Number of orfs with sites within 600 bp upstream = 468 Fraction of orfs with sites within 600 bp upstream = 0.0751686 Motif number 12 CCCAGAGTTGGCCAGCGCTAT 3 2 1 CCAGAGTTGG 0.830535 -100 ACCCGCCACGCCCGGCTTCGCCGCGCTCGC 10 27 0 CCCGGCTTCG 0.852636 -51 CTGTCCGCGACGCGACGTGGCCCCTGGTGC 17 114 0 CGCGACGTGG 0.908975 -88 TTGTGTGTGCCGCGAGGTGGGTGTGTCGGT 18 140 0 CGCGAGGTGG 0.918068 -161 TCTGCTCCTTACGGACTTGGCTTCGGGTTG 25 145 0 ACGGACTTGG 0.887359 -26 CCAGCATGTGACGGGCGTGGACTTGATCGG 26 181 1 ACGGGCGTGG 0.791225 -120 CGGTTTTGTTCCCGAGTTGGTCGCGGCTGT 27 32 0 CCCGAGTTGG 0.985571 -269 AGATTCATTTCCTGAGTTGGCTCAAATTGG 27 167 0 CCTGAGTTGG 0.83054 -134 GGCTGGGCTGCCCGCGGTGGTGTTGACCGG 28 34 1 CCCGCGGTGG 0.924572 -74 AATGAGCGGCACCGACGTGGCCGGAGCCGC 29 30 1 ACCGACGTGG 0.959901 -246 GGCCCGAACGCCGGACGTGGTGGCGGGACG 31 90 1 CCGGACGTGG 0.962874 -73 TTCAGTTGGGCCCGGCTTCG 34 1 0 CCCGGCTTCG 0.852636 -29 TGAAATCCTGCCGGAGTTGGCAATACTCAC 37 156 1 CCGGAGTTGG 0.962373 -145 AGCGAACCCGACCGAGTTCGGGTGATCCGC 38 26 1 ACCGAGTTCG 0.841449 -26 CATTGGGTTCACCGACTTGGGGATCACGAT 47 18 1 ACCGACTTGG 0.954625 -283 TCACGATATTACCGAGTTGGATATGCCACC 47 41 1 ACCGAGTTGG 0.959362 -260 CTCGCACATTCCCGTGGTGGACGCAGAGTC 59 73 0 CCCGTGGTGG 0.892135 -184 ********** Masking position 8 Map Score: 22.8893 Number of sites scoring better than the average of aligned sites = 1680 Number in coding regions = 1554 Number in noncoding regions = 126 Number of orfs with sites within 600 bp upstream = 118 Fraction of orfs with sites within 600 bp upstream = 0.0189528 Motif number 13 TTCTATCGTTGCACCCCGGGCCATTCGTCGT 1 48 0 GCACCCCGGC 0.98347 -46 CTGGCACACCCTACGGCCCGCTAG 8 22 0 GCACACCCTC 0.844613 -14 TTACCGGTCGGCACCCGGAACCGAGCCGTTT 13 17 1 GCACCCGGAC 0.966129 -21 CCTGACCGATGCACCAGGGGCCACGTCGCGT 17 104 1 GCACCAGGGC 0.92152 -98 TGTCACACCGACACACCCACCTCGCGGCACA 18 134 1 ACACACCCAC 0.23518 -167 CCACCTCGCGGCACACACAACACCGACACTG 18 150 1 GCACACACAC 0.463664 -151 AATGGACGGCGCAGACCGGGCCGCTTCGACT 21 73 1 GCAGACCGGC 0.466388 -125 GGCACCACAGTCAGGGCCATGC 21 186 0 GCACCACAGC 0.438655 -12 TACTTCAAGATCACACCGAGCGTCAACGTCT 22 14 1 TCACACCGAC 0.304356 -102 GGTTCGACCGGCTCCCCCGCCTAACG 23 6 0 GCTCCCCCGC 0.728921 -207 GGCGTGGACAGCGCACCGGCCCAACGGCTTG 23 36 0 GCGCACCGGC 0.875671 -177 CTATGTGCAGGCACCGACAACAATGCTTGCC 24 72 0 GCACCGACAC 0.36436 -30 TGAAACTAGCGCACCGGCACCGGACGGACAT 25 116 0 GCACCGGCAC 0.840551 -55 GCGGAGCCCGGCACCGCCAGCAGTGCCTCGC 26 18 1 GCACCGCCAC 0.887392 -283 ATTTCCTCGTGGACCAGGATCATGCCAAGGT 26 69 1 GGACCAGGAC 0.401131 -232 TGTGAGGCGGGCAACCGGTGCACCTCCGCTC 27 199 0 GCAACCGGTC 0.292002 -102 ATGCTGAGGCGCACACGGTCGCTCGCAGCCG 27 235 1 GCACACGGTG 0.149549 -66 TCGCAGCCGGGCACAACGAACACTCCTGCTC 27 257 1 GCACAACGAC 0.801037 -44 CGCCGGGTCGGCACACCGGTCAACACCACCG 28 48 0 GCACACCGGC 0.960598 -60 GTGTCTGACGGGACACCGAGCGTAATCGGGG 31 26 1 GGACACCGAC 0.559769 -137 TGACGTCCCGCCACCACGTCCGGCGTTCGGG 31 92 0 CCACCACGTC 0.187258 -71 CTGGGACTGCGCACCCGGTCCCGTGAGGAGC 31 137 1 GCACCCGGTC 0.793241 -26 AGCTGGCGCCACGAGCTATCTCGCTA 32 6 1 GCGCCACGAC 0.800617 -168 GTGTGGACGGGTGCCCGCGGCACGTCATCCC 32 87 0 GTGCCCGCGC 0.432377 -87 CCGGGCCTATGCACCCGGCTCGCAAACATTA 35 175 0 GCACCCGGCC 0.930414 -103 GCCTCGCCGAGCGCCCCCGACAATCGGGTCG 41 30 1 GCGCCCCCGC 0.945594 -83 TGTGAGCGCCGCACCACCAGCGCCGACGCTA 42 174 1 GCACCACCAC 0.90843 -85 CGCCTCTAGCGTACCGGCGGCAAGCCAGCCT 46 15 0 GTACCGGCGC 0.330605 -82 TGGCCGTTGGGCACGCCGGACTCGCGGCACC 47 174 1 GCACGCCGGC 0.92437 -127 CGGCGACGATGCACGCCGCGCAGCGGCGTGA 53 108 0 GCACGCCGCC 0.654142 -95 CGGCGACGATGCACGCCGCGCAGCGGCGTGA 53 166 0 GCACGCCGCC 0.654142 -37 CCAGTGAGTGGTACCCCCACCGCATCGTCGT 56 25 0 GTACCCCCAC 0.744147 -40 CCTCGATCCTGCACCTGGGCCGGGCTGTGCG 57 137 1 GCACCTGGGC 0.667204 -164 CGTCCATCCAGCGCCAGCAACGTCGCATCTA 57 175 1 GCGCCAGCAC 0.652193 -126 CCGAGGAGGAGCACCCGCTGCACATGAAGCA 59 139 0 GCACCCGCTC 0.836789 -118 ********* * Masking position 11 Map Score: 29.5425 Number of sites scoring better than the average of aligned sites = 9632 Number in coding regions = 9045 Number in noncoding regions = 587 Number of orfs with sites within 600 bp upstream = 473 Fraction of orfs with sites within 600 bp upstream = 0.0759717 Motif number 14 CCGCTGTGCGGCGAGGAGATCCGAAACG 3 84 1 GGAGGGACCG 0.976504 -18 TGGTCGATAGCCTAGCGGGCCGTAGGGTGTGC 8 10 1 GCTAGGGCCG 0.689414 -26 CCGCGGTCATGGCAGCTGACCAGCGCG 12 43 1 GCAGCGACAG 0.721735 -17 AATCCAGATGGACTACGAAACCGATACCGACAC 15 94 1 GCTACAACCG 0.901066 -71 TGAGCCAGACACCAGGTGATCCGGAACAAACCA 18 86 1 ACAGGGACCG 0.774388 -215 CCTAGCGCCGGTGAGCCGTGCCGGCCTATCGCC 18 233 0 GGAGCGTCCG 0.788714 -68 CCCCGGGACGGAGACCGGAGCCGGTCACGGA 22 95 1 GGACCGACCG 0.819297 -21 CGTTAGGCGGGGGAGCCGGTCGAACCAA 23 6 1 GCGGGGACCG 0.935241 -207 CAAGTCCGTAAGGAGCAGAACCGAC 25 156 1 AGAGCGACCG 0.786897 -15 CGACCAACTCGGGAACAAAACCGCCGGTCAGGC 27 39 1 GGAACAACCG 0.909579 -262 GGGCAGCCCAGCCAACCAGACCGCGGGTAGGCG 28 14 0 GCAACAGCCG 0.69612 -94 GTGTTGACCGGTGTGCCGACCCGGCGGTGCCGG 28 53 1 GGTGCGACCG 0.975893 -55 GCATCCCGCCGGGAGCGGCTCCGGCCACGTCGG 29 41 0 GGAGCGCCCG 0.846608 -235 CATGCTCGCTGGCTGGCAACGCGACGCAGTGGC 29 140 0 GCTGGAAGCG 0.500239 -136 CGGCGTTCGGGCCAACTGATCCGAAACGATTGT 31 70 0 GCAACGACCG 0.961713 -93 TAACCGCTGGGACTGCGCACCCGGTCCCGTGAG 31 131 1 GCTGCCACCG 0.836476 -32 CCGGCCGCTCGCCTGGAAAACCGACGGTGTGGA 32 111 0 GCTGGAACCG 0.951234 -63 GATATAGCGCGACGACCGAGCCGCCC 32 158 1 GCGACGACCG 0.870855 -16 ATACGACAGCGAGTAGTAAGCCGGAGTACGCTG 35 227 1 GGTAGAACCG 0.834787 -51 CTCAAACAGCGCAAGCGAACCCGACCGAGTTCG 38 13 1 GAAGCAACCG 0.702723 -39 AGCACATCCCGCCTGGGAAACCGCTGCGAGCCG 42 142 0 GCTGGAACCG 0.951234 -117 GACCTCGATGGGGTGGGAATCCGGGAATTCGGT 57 238 0 GGTGGAACCG 0.93777 -63 TGCAGTCATAGCCAAGAAAGCCGGTGTCTTGCA 58 191 0 GCAAGAACCG 0.903386 -110 GGATGTGAGCCTAACCGCGCGACGATA 58 284 0 GGAGCTACCG 0.792184 -17 * **** ** *** Masking position 13 Map Score: 25.1828 Number of sites scoring better than the average of aligned sites = 4832 Number in coding regions = 4489 Number in noncoding regions = 343 Number of orfs with sites within 600 bp upstream = 297 Fraction of orfs with sites within 600 bp upstream = 0.0477032 Motif number 15 ATCCGACGATCAGCAGCGCAACCATGGCCCAG 3 30 1 CGCAGCGAAC 0.937088 -72 CTACCCAAGCCGAACGCGAAACGAGAACGTGT 7 18 0 CAACGCGAAC 0.809658 -81 CCGGAACAAACCACCGCGACACGGCGTCTGTC 18 106 1 CACCGCGCAC 0.782368 -195 ACGATGCGCGCCGCAGCGATACCTTGCCCAAC 19 33 1 CGCAGCGTAC 0.841145 -124 ACCCGGCGTCCCGTAGCGAAACGGACTCTACT 21 39 1 CGTAGCGAAC 0.840635 -159 GAAGCGATCTCCGTCGCGAAACAGGGCAGTGC 21 107 1 CGTCGCGAAC 0.967893 -91 GTTCCATACCGGGACGCGTAACCTGGAGCACC 25 44 0 GGACGCGAAC 0.923855 -127 TTGCGCCGCGGAGCCCGGCACCGC 26 3 1 GGCCGCGAGC 0.883955 -298 TGCGGCCACTGCGTCGCGTTGCCAGCCAGCGA 29 136 1 GGTCGCGTGC 0.536821 -140 ACTACATCCGGCGACCCGCAACCGCAGGTCAC 29 203 0 GGACCCGAAC 0.432978 -73 GGATCGGTGTCTGACGGGACACCGAGCGTAAT 31 20 1 CGACGGGCAC 0.460683 -143 CTTTCGCTCGCAACCGCGCAGCGCGATACTGC 32 56 0 CACCGCGAGC 0.828443 -118 ACGGCATCTTCTGACGCGTAACCGCGTTGTGA 42 217 1 CGACGCGAAC 0.972528 -42 GCTAGAGGCGCCGTCGCCTGACCGCGGCCGCG 46 36 1 CGTCGCCGAC 0.67109 -61 CAAGCGGTAGGTGCCGCGAGTCCGGCGTGCCC 47 182 0 GGCCGCGGTC 0.803178 -119 GTGAGCGGGTCAGCGGCGCGACGCTTAAACTT 50 24 1 CGCGGCGGAC 0.879213 -84 TAACCACTGACGCGTTACGAGCCCAG 52 7 1 CGACGCGTAC 0.922798 -20 ATGACCCGCACCGCAGCGCGGCGCGATGGGTA 53 44 0 CGCAGCGGGC 0.885312 -159 GACACCAGCCGCGCGTCCAAGAATTCA 54 6 1 CGCCGCGGTC 0.937492 -55 GACCGGCTTCCCGTCGCGGGACGTTCGCGATG 59 193 1 CGTCGCGGAC 0.969964 -64 * ****** *** Masking position 12 Map Score: 19.9001 Number of sites scoring better than the average of aligned sites = 3716 Number in coding regions = 3409 Number in noncoding regions = 307 Number of orfs with sites within 600 bp upstream = 264 Fraction of orfs with sites within 600 bp upstream = 0.0424028