AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00640_mtub_reg_300.orf -o00640_mtub_300.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: fadE21 25 fadE21 Rv3807c 28 hypothetical protein Rv3807c Input sequences: #1 fadE1 41 fadE1 #2 Rv0132c 86 hypothetical protein Rv0132c #3 Rv0144 101 hypothetical protein Rv0144 #4 Rv0145 88 hypothetical protein Rv0145 #5 Rv0146 42 hypothetical protein Rv0146 #6 Rv0147 94 hypothetical protein Rv0147 #7 fadE2 300 fadE2 #8 fadE3 56 fadE3 #9 Rv0218 92 hypothetical protein Rv0218 #10 Rv0221 43 hypothetical protein Rv0221 #11 echA1 30 echA1 #12 Rv0223c 98 hypothetical protein Rv0223c #13 Rv0224c 35 hypothetical protein Rv0224c #14 fadE4 94 fadE4 #15 fadA2 141 fadA2 #16 fadE6 113 fadE6 #17 Rv0273c 96 hypothetical protein Rv0273c #18 Rv0407 77 hypothetical protein Rv0407 #19 end 194 end #20 lpqP 31 lpqP #21 fadE8 59 fadE8 #22 mmsA 205 mmsA #23 fadA 156 fadA #24 fadE10 260 fadE10 #25 accD3_echA6 26 accD3: accD3, echA6: echA6 #26 sucC 300 sucC #27 Rv0976c 197 hypothetical protein Rv0976c #28 echA9 186 echA9 #29 fadA4 300 fadA4 #30 Rv1344 44 hypothetical protein Rv1344 #31 mutA 190 mutA #32 echA13 224 echA13 #33 aceE 51 aceE #34 Rv2242 59 hypothetical protein Rv2242 #35 fabD 238 fabD #36 acpM 75 acpM #37 kasB 30 kasB #38 accD6 30 accD6 #39 echA14 300 echA14 #40 scoA 82 scoA #41 fadD35 115 fadD35 #42 gabT 166 gabT #43 echA15 52 echA15 #44 fadE20 135 fadE20 #45 dapF 24 dapF #46 Rv2728c 108 hypothetical protein Rv2728c #47 Rv2729c 66 hypothetical protein Rv2729c #48 ltp1 32 ltp1 #49 Rv2792c 201 hypothetical protein Rv2792c #50 Rv2795c 144 hypothetical protein Rv2795c #51 Rv2798c 130 hypothetical protein Rv2798c #52 echA16 46 echA16 #53 serB2 37 serB2 #54 ctaD 214 ctaD #55 Rv3137 300 hypothetical protein Rv3137 #56 fadE24 79 fadE24 #57 fadE25 24 fadE25 #58 accD5 49 accD5 #59 sseA 40 sseA #60 accA3 107 accA3 #61 lat 50 lat #62 Rv3291c_Rv3292 30 Rv3291c: hypothetical protein Rv3291c, Rv3292: hypothetical protein Rv3292 #63 aldB 26 aldB #64 Rv3371 191 hypothetical protein Rv3371 #65 otsB2 41 otsB2 #66 echA18 236 echA18 #67 fadE26 214 fadE26 #68 fadE27 24 fadE27 #69 echA19 73 echA19 #70 Rv3545c 111 hypothetical protein Rv3545c #71 echA20 54 echA20 #72 fadA6 64 fadA6 #73 Rv3557c 300 hypothetical protein Rv3557c #74 fadE30_fadD3 47 fadE30: fadE30, fadD3: fadD3 #75 fadE34 271 fadE34 #76 acs 300 acs #77 Rv3788 243 hypothetical protein Rv3788 #78 Rv3789 108 hypothetical protein Rv3789 #79 Rv3790 39 hypothetical protein Rv3790 #80 embA 85 embA #81 atsH 67 atsH #82 fadE35 79 fadE35 #83 fadD32 288 fadD32 #84 Rv3802c 197 hypothetical protein Rv3802c #85 fbpC1 179 fbpC1 #86 fbpA 294 fbpA #87 Rv3805c 88 hypothetical protein Rv3805c #88 glf 263 glf Motif number 1 GACTCACCGTCGGCGCCACCGGTTAGCCTG 2 16 0 CGGCGCCACC 0.517418 -71 GCTGCACTACCCGCGTCGCGCTGCAGCACA 2 64 0 CCGCGTCGCG 0.927482 -23 CGACGATCAGCAGCGCAACCATGGCCCAGG 3 33 1 CAGCGCAACC 0.540048 -69 CGGATCTCCTCGCCGCACAGCGGCGGTGAT 3 77 0 CGCCGCACAG 0.900748 -25 AGACCTAACCGGCGGCCCCGAAGCGTAGTG 4 14 1 GGCGGCCCCG 0.520569 -75 CGAGCGCATCCGACTGACCTT 6 2 1 GAGCGCATCC 0.556541 -93 ACGTGCCGATCGCCGAATCC 7 1 0 CGCCGAATCC 0.626362 -300 CGAATCCCGTGACCGCAACGGCCAGTGGTA 7 73 0 GACCGCAACG 0.85231 -228 CACGAAACGACGGCGAGCAGACGCAAAACC 7 206 1 CGGCGAGCAG 0.482965 -95 TCCCTCGACACGCCGACGAGAAGGGGGTTT 7 231 0 CGCCGACGAG 0.774537 -70 CGCCATGACCGCCGGCGACGATGCCGAGCG 12 55 1 GCCGGCGACG 0.830627 -44 CGACGATGCCGAGCGCAGCGATGAGGAGGA 12 70 1 GAGCGCAGCG 0.871121 -29 GCTACTGCACTGCGGCCCCGCAAGACACCG 14 33 0 TGCGGCCCCG 0.778936 -62 CCTCGTCGTTGACCGAACCGCTCGGGAGCC 14 68 1 GACCGAACCG 0.794191 -27 GTATTGGCGCGCCCGACCCCCACACGATAC 15 25 0 GCCCGACCCC 0.913478 -117 TTGATCAGTTCGGGGGATCGGCCGTTGAGG 15 111 0 CGGGGGATCG 0.651676 -31 GAAGGTGCTTGGCCGAAACGTCCAACAGCA 16 80 1 GGCCGAAACG 0.809413 -34 TTGGCCAGGCCGCCGTCCCGGGGAGCCAAT 17 23 0 CGCCGTCCCG 0.972732 -74 GAGCGATCGCGAGCGCGGCGAAGCCGGGCG 18 19 1 GAGCGCGGCG 0.841756 -59 CGGCGAAGCCGGGCGTGGCGGGTCGCGTTT 18 34 1 GGGCGTGGCG 0.857944 -44 CGCGCTGCTCCGGGGAAACGTATCCCACAA 19 56 1 CGGGGAAACG 0.437927 -139 ACACTTTATGCGCCGGGGCCCACGAATACG 19 92 1 CGCCGGGGCC 0.86123 -103 GTCCGGCCAGCCGCGGCACGGGATGCTGCC 19 125 0 CCGCGGCACG 0.899345 -70 CTTCAAGCCCCGCGGCACCTACCGTTGAC 20 10 1 CCGCGGCACC 0.790337 -22 AGCCATGATGGAGCGCAGCGCCGGAACAGA 22 39 1 GAGCGCAGCG 0.871121 -167 CGGAACAGATGCGGGTATCGGCCAAAATGC 22 60 1 GCGGGTATCG 0.466399 -146 CTCGCAAGGCGACCGAGCCGACAGCGTCCT 22 115 0 GACCGAGCCG 0.788824 -91 CGGGATTCCCCGCCGCCACCGGCTTGCACA 22 178 1 CGCCGCCACC 0.546976 -28 GGCGGTCGAGCCTATCCGGG 23 1 1 GGCGGTCGAG 0.678757 -156 TCGAGCCTATCCGGGCGACGATGCGCGCCG 23 16 1 CCGGGCGACG 0.691113 -141 CGACGATGCGCGCCGCAGCGATACCTTGCC 23 31 1 CGCCGCAGCG 0.926357 -126 GGCACCCTAACAGGGCCCCCGGCCAACCTG 23 68 0 CAGGGCCCCC 0.760676 -89 CAAGACTAGGTCCCGTACCGGCACCCTAAC 23 87 0 TCCCGTACCG 0.469553 -70 AAACTGGAGACGCCGACCCGCGTTCGCGCT 24 61 0 CGCCGACCCG 0.963245 -200 ATGGAAAAACGGCGGCCCCGACCCTGCCTC 24 103 1 GGCGGCCCCG 0.520569 -158 CCTGCCTCAGCGTCGCAGCCGTCGTTGGCG 24 125 1 CGTCGCAGCC 0.764845 -136 GGTCACCGGTGCTCGCCGCCAACGACGGCT 24 141 0 GCTCGCCGCC 0.873107 -120 CTACCAAAGTCACGGTCACCGGTGCTCGCC 24 154 0 CACGGTCACC 0.414401 -107 GTGACTTTGGTAGCGGCCCGTCCGCAGTGG 24 171 1 TAGCGGCCCG 0.433676 -90 CCGAATACTACGTGGCACCCACTGCGGACG 24 189 0 CGTGGCACCC 0.641626 -72 CGCCGCCTCCTCGCTGACGA 24 251 0 CGCCGCCTCC 0.926667 -10 TTTGTCCCAGCACCGTATCGCCCGT 26 6 0 CACCGTATCG 0.627402 -295 TCTGAAATGTCCTCGGATCGTGACCATAAC 26 36 1 CCTCGGATCG 0.567049 -265 TTAACTCCGCGGCCGCATCCACCCGGTGTG 26 187 0 GGCCGCATCC 0.896767 -114 GGAGTTAATCGGCGGTCTCGATACAGTTCT 26 209 1 GGCGGTCTCG 0.86483 -92 GTGCCGAAATCGGCGACTCGCACGGAGAAC 26 234 0 CGGCGACTCG 0.842819 -67 CCAATAGGTAGGCGGTGCCGAAATCGGCGA 26 248 0 GGCGGTGCCG 0.86366 -53 CCGGGTGCTTTGCCGGCCCCAGGAGGTCAG 27 15 0 TGCCGGCCCC 0.691085 -183 GCAAAGCACCCGGCGTCCCGTAGCGAAACG 27 32 1 CGGCGTCCCG 0.952179 -166 GGACGGCGCAGACCGGGCCGCTTCGACTCA 27 76 1 GACCGGGCCG 0.899683 -122 CGTCGGATCCTCTCTTGATG 28 1 1 CGTCGGATCC 0.443318 -186 TGTTCGCACAGCTCGTAGCCATAGCCATCA 28 26 0 GCTCGTAGCC 0.458184 -161 GACAACGCTGGCCGGGAACCCGGGCCTACT 28 73 0 GCCGGGAACC 0.531737 -114 CTTAGCCCCCGCGGGCACCGCTGGGCGAGC 28 122 1 GCGGGCACCG 0.900841 -65 CTAGATCGTGGCTCGCCCAGCGGTGCCCGC 28 132 0 GCTCGCCCAG 0.777235 -55 GGGCCTCGCCTCCCCTGAAGAGT 28 174 0 CCTCGCCTCC 0.745078 -13 TTGCGCCGCGGAGCCCGGCACCG 29 4 1 CGCCGCGGAG 0.794714 -297 CGCCGCGGAGCCCGGCACCGCCAGCAGTGC 29 14 1 CCCGGCACCG 0.942762 -287 TCGGTATTGCGGTCGCCGACCTGGACGTTG 29 121 0 GGTCGCCGAC 0.593822 -180 AAGCCGATCTGACCGACCCGGAGAAGCAGA 29 246 0 GACCGACCCG 0.909946 -55 ACTACCTCCTCAGCGCACCCGAAAGCCGAT 29 268 0 CAGCGCACCC 0.791979 -33 TAGAGCAGTGCGCGGTAACGTCGTGGG 30 8 0 CGCGGTAACG 0.69571 -37 CTATTGGGCGCCCGGGCGCG 30 35 1 CCCGGGCGCG 0.937406 -10 TTCGTCACACTCCGGCCGCGATTGCCGCAC 31 64 1 TCCGGCCGCG 0.664568 -127 GCGTCTATATGGGCGTCCCGATCAACTAGC 31 98 1 GGGCGTCCCG 0.960858 -93 CCGGTCGGATGCCCGGCGCGCTGCGGTGGC 32 32 1 GCCCGGCGCG 0.976797 -193 TATACGCAAAGGGCGCCACCGCAGCGCGCC 32 46 0 GGGCGCCACC 0.563211 -179 GGACGGGTAACCTCGCACAGGTCAGCCGTT 32 184 1 CCTCGCACAG 0.55489 -41 CGCCGGCGAGCCGACCGCCT 34 1 1 CGCCGGCGAG 0.891857 -59 GACCCCCTCTGACCGGCGAGGGAATCTATG 35 33 0 GACCGGCGAG 0.711829 -206 GCCGGTCAGAGGGGGTCCAGCAGGGGCCCC 35 46 1 GGGGGTCCAG 0.60848 -193 TGGTATCTTTCCGGGGCCCCTGCTGGACCC 35 58 0 CCGGGGCCCC 0.823008 -181 CTTTCCGTCCGACGGCGCCCCTGGTATCTT 35 79 0 GACGGCGCCC 0.721279 -160 ATGTTTTTGAGATCGTCCCGCGACCTGTTG 35 118 0 GATCGTCCCG 0.751495 -121 CCGCGGACTCGGCCAGAACAA 36 2 1 CGCGGACTCG 0.798259 -74 GCACGACATCGCGGGTCGCGAGGCCCGAG 37 12 1 GCGGGTCGCG 0.838743 -19 GCGAAAGGTCTACCGCCACGTCAATTATTG 39 47 0 TACCGCCACG 0.480612 -254 ATCTAACGGTGGCCGTCGAGGAATTTTTCC 39 90 0 GGCCGTCGAG 0.847428 -211 CTGACCTGCGCATCGCCTCCGTAGCTCAGG 39 123 1 CATCGCCTCC 0.541313 -178 TCCACAGTGCCCCCGGCACGACTCGAACGT 39 188 0 CCCCGGCACG 0.945456 -113 CGTGGCTTGACACCGCCTCGTTATGGGTCG 39 239 1 CACCGCCTCG 0.933913 -62 CCTCGTTATGGGTCGACGCCCAGAGTCGCC 39 254 1 GGTCGACGCC 0.676284 -47 GACGGTCTCCGTACACGACT 41 1 1 GACGGTCTCC 0.430643 -115 CGCGGGTAGGCCTGGCACCGTGATCGCAAT 42 32 0 CCTGGCACCG 0.765471 -135 GTTACCAGGTGCGCGGCCCGCGGGTAGGCC 42 50 0 GCGCGGCCCG 0.968719 -117 AGTCCAGTGTGCCCGTCCAGTCTGGCAGGC 42 80 1 GCCCGTCCAG 0.846144 -87 CAGTCTGGCAGGCCGGAAACATCGGTCAGC 42 97 1 GGCCGGAAAC 0.384609 -70 CGATGTGAACCGGCGAGCCGGGTGAGGAGG 42 143 1 CGGCGAGCCG 0.840029 -24 ATGCTGCCACGACCGCCACCCCGCACCTGC 43 19 1 GACCGCCACC 0.862881 -34 GCACCGAATTCGCCGTGGCG 44 1 0 CGCCGTGGCG 0.893322 -135 CACGCAAGCTCGCCGTGGCGTTACGCTCGC 44 30 1 CGCCGTGGCG 0.893322 -106 GTGGCGTTACGCTCGCAGCGGCTGGCGCGC 44 44 1 GCTCGCAGCG 0.865357 -92 GCAGCGGCTGGCGCGCCCCGGCTACCTGCC 44 58 1 GCGCGCCCCG 0.978234 -78 GGCCAATGAGCGCGGGACAGTGTCGGCCTC 46 19 1 CGCGGGACAG 0.631014 -90 TGCTCCACGAGGCCGAATCCGCCCGCCAAG 46 73 1 GGCCGAATCC 0.641801 -36 GGCCGAATCCGCCCGCCAAGGCGTTAGCTT 46 83 1 GCCCGCCAAG 0.844657 -26 CAACCGAATCGCCCGGCTCCTCCTCACCCC 49 12 0 GCCCGGCTCC 0.886577 -190 TGCCGTCCCGGACCGCATCCCCCTACATTG 49 53 0 GACCGCATCC 0.708856 -149 GTGCCACCGTTGCCGTCCCGGACCGCATCC 49 63 0 TGCCGTCCCG 0.769619 -139 GTGCGACGTAGGCCGTGTAGCCCAGTGTGC 49 89 0 GGCCGTGTAG 0.474642 -113 GGGCTAGGTTGGCCGAGCAGACGCAAAAGC 50 16 1 GGCCGAGCAG 0.65952 -129 CGTCTGCTCACGCCGTAGCGGTTGGTCGAA 50 77 1 CGCCGTAGCG 0.931741 -68 GTTCCCACTTCGCCGGGTCGTTAGGGTGGT 50 120 1 CGCCGGGTCG 0.902236 -25 ACTGTGACGACGCGGAGCCGAC 51 3 0 CGCGGAGCCG 0.78261 -128 TTGTTCTAACCCGGGCCACCTTTGATGCGG 51 44 1 CCGGGCCACC 0.731701 -87 TGGGGCCGTACCGGTTGGGCCCC 53 4 1 GGCCGTACCG 0.954191 -34 CCCGCCGGACAGCACGCGTTCG 54 3 1 CGCCGGACAG 0.818028 -212 GGGGTCGACGGCTGGCCGAGTGCTACCGTC 54 32 0 GCTGGCCGAG 0.48191 -183 CTCGGCCAGCCGTCGACCCCGATTCGCGCG 54 42 1 CGTCGACCCC 0.73513 -173 CGATTCGCGCGGGCGGAAAGCGTTGGTCTG 54 61 1 GGGCGGAAAG 0.432982 -154 CAGACTCCGCCGGCGGGCCGTTGCAGACCA 54 84 0 CGGCGGGCCG 0.911542 -131 CAAACATCCAGCCCGGACCGGGCCAAAACC 54 185 0 GCCCGGACCG 0.958242 -30 GTGACATACTGCTGGCCGCCTGCGTCCGGT 55 32 1 GCTGGCCGCC 0.722185 -269 ACCGGAGTCAGCCCGCGACCGGACGCAGGC 55 49 0 GCCCGCGACC 0.849782 -252 GAGATCTGGCCAGCGGCACGCTCCTGGTGA 55 78 0 CAGCGGCACG 0.782971 -223 GGCTTATCCCGCGCGGCCCGCGGGGAGATC 55 102 0 GCGCGGCCCG 0.968719 -199 CCGCTGGCGACCTGGCCCAGTCCGAAG 59 8 0 CCTGGCCCAG 0.553929 -33 GAAGTTTAAGCGTCGCGCCGCTGACCCGCT 60 27 0 CGTCGCGCCG 0.501011 -81 CTTAAACTTCCCCCGACAAGACTTGTAAGA 60 47 1 CCCCGACAAG 0.511918 -61 GGCCGGAGACTATCGCAACG 62 21 0 GGCCGGAGAC 0.58687 -10 CTGGGCTCGTAACGCGTCAGTGGT 63 13 0 GCTCGTAACG 0.468618 -14 CCGCCCAGCTCGGCGGCCCGTTGCTCCACC 64 13 1 CGGCGGCCCG 0.965253 -179 TATAAGTGTCCGCCGGACCGCACCGGAAGC 64 139 0 CGCCGGACCG 0.968666 -53 GGAGCGTATCGCCCGCGGCGGCACCGCGTC 66 11 0 GCCCGCGGCG 0.948605 -226 CCTCGTTGACGGTCGGAGCGTATCGCCCGC 66 25 0 GGTCGGAGCG 0.820964 -212 CCAAGTCTGTCGCCGCCGCGGCCAGCATCT 66 89 0 CGCCGCCGCG 0.512603 -148 GGTCAGGGATCAGCGCCGCCTATGCGCGTC 66 128 1 CAGCGCCGCC 0.849765 -109 CCAGCCAGGTCACCGCAGAGGACGCGCATA 66 148 0 CACCGCAGAG 0.640667 -89 TCTGGCAGCACCCGGTGTCGATAAAGACGT 66 188 0 CCCGGTGTCG 0.605653 -49 CCGACCTGTGCCGCGTCTCGAGTTCTCTGG 66 213 0 CCGCGTCTCG 0.849152 -24 ACGCGGCACAGGTCGGCACC 66 227 1 GGTCGGCACC 0.689854 -10 GGTTGCCACGGCCGCCACCTCTTTCTGCC 69 55 0 GGCCGCCACC 0.608145 -19 AACATGCCTTCACCGCAGACAAAAGGCATT 70 60 0 CACCGCAGAC 0.429283 -52 AATGCCCCGTGTCGACGACGATGC 72 5 1 CCCCGTGTCG 0.801477 -60 GTGGTACCCCCACCGCATCGTCGTCGACAC 72 19 0 CACCGCATCG 0.84374 -46 GCATATTCTTCCGCGCGTCGTCATAGCCTA 73 29 0 CCGCGCGTCG 0.869555 -272 TCTGGGGTATCGGCGGAGAGTGCCTAGCGT 73 81 0 CGGCGGAGAG 0.618887 -220 GCCCGCACAGCCCGGCCCAGGTGCAGGATC 73 141 0 CCCGGCCCAG 0.862527 -160 TGGACGCCTTGCCCGCACAGCCCGGCCCAG 73 151 0 GCCCGCACAG 0.870711 -150 GGTGAGCGAAGGGCGCATCCCTCGTACCGA 73 213 1 GGGCGCATCC 0.817455 -88 CCAAGCGCTTGCTCGGCCAGCTGCGACCTC 73 265 0 GCTCGGCCAG 0.633316 -36 CAGCACATGTCGTCGTCTCGGCTGTCGGGA 75 144 0 CGTCGTCTCG 0.756918 -128 CTGCAGACCTCCGCGTCGACAATTTCACAT 75 252 0 CCGCGTCGAC 0.439514 -20 CGGATCGCGTTGGGGCACCGCTG 76 4 0 TGGGGCACCG 0.445055 -297 CAACGCGATCCGCCGCGCCGATAAAGCTAA 76 22 1 CGCCGCGCCG 0.506724 -279 GATCTCCGTTGCCGGCCACCGTAACCGTCA 76 100 1 GCCGGCCACC 0.85319 -201 GTGAGCCTAACCGCGCGACGATACAGCCGG 76 277 0 CCGCGCGACG 0.85716 -24 GAGCGTTGGCGGCCGGACCGGGCCGAAGAT 77 17 0 GGCCGGACCG 0.970639 -227 TTCGGGTCGACAGCGGAGCGTTGGCGGCCG 77 32 0 CAGCGGAGCG 0.757959 -212 AAACAGCTATCCGGGCGCAGGCGACAACGC 77 192 1 CCGGGCGCAG 0.544524 -52 ACAACGCAGTCACCGAAGCGCCGCGAAAGG 77 215 1 CACCGAAGCG 0.716732 -29 GCACCAGGCTCGCCGCCCCCATTAGACTTC 78 21 1 CGCCGCCCCC 0.522288 -88 TCTGGTGCCGCGCCGCCACGCCAACACCTG 78 71 1 CGCCGCCACG 0.560285 -38 GCCGGTCAGGGTCGAATCGGGCGGGTACC 79 10 1 GGTCGAATCG 0.456601 -30 GTCGAATCGGGCGGGTACCCTCTTTGACG 79 21 1 GCGGGTACCC 0.544617 -19 TCGCCGAGTCGGTGGCCACGGCACTT 80 7 0 GGTGGCCACG 0.522831 -79 CGACAACCTCCGCGGCCCCGCATCCTCACC 80 34 1 CGCGGCCCCG 0.506549 -52 CCGCCCTTAACCGCGTCGCCTACCATCGAG 80 62 1 CCGCGTCGCC 0.843671 -24 TAATGACGAACATCGTGCCGCTATCGACTG 81 23 0 CATCGTGCCG 0.511228 -45 AGGCCTAACTGATGGGGCCGTCTAATGACG 81 45 0 GATGGGGCCG 0.40301 -23 CCGTTAGCGGTAGCGCCCCGTTCGACGATC 82 12 1 TAGCGCCCCG 0.607366 -68 TTCATCGGTGGACCGCCGCCTAGCGTCCAT 83 27 0 GACCGCCGCC 0.927162 -262 CCGATGAACCGGGCGACTCGACACCGCCCC 83 49 1 GGGCGACTCG 0.851454 -240 GGCGACTCGACACCGCCCCGCGTACGTTGA 83 60 1 CACCGCCCCG 0.968771 -229 GTACGTTGATGGCGGCCTCGAACAGCGGTA 83 81 1 GGCGGCCTCG 0.92331 -208 GTAACCCGTTGGCGGAGCCGACACCCGGTG 83 247 1 GGCGGAGCCG 0.815493 -42 CGGCTCTGCCGGCGGCCACCGGGTGTCGGC 83 263 0 GGCGGCCACC 0.51858 -26 CGCCGGCAGAGCCGGCCGAG 83 279 1 GCCGGCCGAG 0.824572 -10 CGGCCAGGCAGCTCGCATCGGCACCTGGC 84 10 0 GCTCGCATCG 0.738762 -188 ACGCGGCTTCGCCCGAGTCGCGATGTCGTG 84 68 0 GCCCGAGTCG 0.740439 -130 TCGGGCGAAGCCGCGTAGCGGGCCGGTACC 84 82 1 CCGCGTAGCG 0.830108 -116 CGCGTAGCGGGCCGGTACCGTAGAGGGAGT 84 93 1 GCCGGTACCG 0.846145 -105 CAACGGGCGGGATGGCCGCGCTATCGCGCG 84 127 1 GATGGCCGCG 0.714011 -71 AGGGGTGCACCCGCGCCGCGCGATAGCGCG 84 143 0 CCGCGCCGCG 0.949856 -55 AACATCTAGCGGCGGTGACCCTTGTGGTCG 85 25 1 GGCGGTGACC 0.494544 -155 TGACCCTTGTGGTCGCCGCCGCTAGATGTT 85 40 1 GGTCGCCGCC 0.533008 -140 TAACCACACGGCCCGCGGCGGGAGCTAGGG 85 83 0 GCCCGCGGCG 0.948605 -97 CCCGGCGTCAGACCGCCCCGGCCAACCCCT 85 128 0 GACCGCCCCG 0.975778 -52 GCCACCTTCAGGCCGTCGCGTCGGTCCCGA 86 99 1 GGCCGTCGCG 0.967943 -196 TCAAGCGCACCGCCGAAACCCTTATCCGGC 86 146 0 CGCCGAAACC 0.626354 -149 CCACAACTTCGGGCGTCCACCCGCATCAAG 86 171 0 GGGCGTCCAC 0.632837 -124 GACTGCAGGCGCTGGGCCCGGCAGTGCTCG 86 210 0 GCTGGGCCCG 0.818928 -85 ATGCATGTTTGGGCGCATCCTGAATTAGGT 86 242 0 GGGCGCATCC 0.817455 -53 ACCACCGGCCGGCGGGGCAGCACCCCGACT 87 32 0 GGCGGGGCAG 0.638879 -57 AACACCGGCCGACCGACCCGCCCGACCACC 87 56 0 GACCGACCCG 0.909946 -33 GCGCCGGGTTCGCCGGCTCCCGCGGTCGCG 88 40 1 CGCCGGCTCC 0.913317 -224 CGCCGGCTCCCGCGGTCGCGAGTGCATGGC 88 50 1 CGCGGTCGCG 0.894125 -214 AGGTGCGCATGGCCGACCAGTGTGGTTGGC 88 171 0 GGCCGACCAG 0.839738 -93 TTCGGGCCATGACCGCCACGAGCTGCCAAA 88 214 1 GACCGCCACG 0.936375 -50 ********** Masking position 5 Map Score: 208.747 Number of sites scoring better than the average of aligned sites = 115500 Number in coding regions = 107817 Number in noncoding regions = 7683 Number of orfs with sites within 600 bp upstream = 1711 Fraction of orfs with sites within 600 bp upstream = 0.274815 Motif number 2 GATCTCCTCGCCGCACAGCGGCGGTGATCG 3 75 0 CCGCACAGCG 0.799707 -27 CCGAGACCTAACCGGCGGCCCCGAAG 4 7 1 CCTAACCGGC 0.678769 -82 CGAGCGCATCCGACTGACCTTATATATCC 6 10 1 CCGACTGACC 0.573739 -85 TCAACGACGTGCCGATCGCCGAATCC 7 7 0 GCCGATCGCC 0.76003 -294 TGTCCGATAGCCTGCCAGCATGTGGCGTT 8 10 0 CCTGCCAGCA 0.443692 -47 TCCGTATTGACCCCCTGTCCGATAGCCTGC 8 25 0 CCCCCTGTCC 0.28853 -32 CAGGCCACCATCCCGATCCTCGT 9 80 0 GCCACCATCC 0.464943 -13 CACCCTACGGCCCGCTAGGCTATCGACCA 13 10 0 CCCGCTAGGC 0.619968 -26 AAGAATTGGCTCCCGAGCGGTTCGGTCA 14 77 0 GCTCCCGAGC 0.47574 -18 GTGTATTGGCGCGCCCGACCCCCACACGAT 15 27 0 GCGCCCGACC 0.868708 -115 ACCCATTTCGCCGGCCATCCGCTAGCCAAC 16 19 1 CCGGCCATCC 0.900774 -95 ACGTTAATAACCGACCCACCGGTTGTTAGC 16 47 1 CCGACCCACC 0.915245 -67 CACCTTCCAAGCTAACAACCGGTGGGTCGG 16 57 0 GCTAACAACC 0.337146 -57 GCTTGGCCAGGCCGCCGTCCCGGGGAGCCA 17 25 0 GCCGCCGTCC 0.77885 -72 TGCCATAAACGCGACCCGCCACGCCCGGCT 18 40 0 GCGACCCGCC 0.964782 -38 GCCTAATCCTCCGCACCAGCAGCAAATTTC 19 12 1 CCGCACCAGC 0.768261 -183 GGCACGGGATGCTGCCGTCCGTATTCGTGG 19 111 0 GCTGCCGTCC 0.738307 -84 CGGATCACGTCCGGCCAGCCGCGGCACGGG 19 133 0 CCGGCCAGCC 0.976718 -62 GGCTCGCAAGGCGACCGAGCCGACAGCGTC 22 117 0 GCGACCGAGC 0.709727 -89 GCATCGTCGCCCGGATAGGCTCGACCGCC 23 10 0 CCGGATAGGC 0.688704 -147 AACAGGGCCCCCGGCCAACCTGTTGGTTGG 23 60 0 CCGGCCAACC 0.933159 -97 GTACCGGCACCCTAACAGGGCCCCCGGCCA 23 73 0 CCTAACAGGG 0.292833 -84 ACTGGAGACGCCGACCCGCGTTCGCGCTAA 24 59 0 CCGACCCGCG 0.938222 -202 AACGGCGGCCCCGACCCTGCCTCAGCGTCG 24 110 1 CCGACCCTGC 0.774352 -151 ACCGGTGCTCGCCGCCAACGACGGCTGCGA 24 137 0 GCCGCCAACG 0.659001 -124 GGCACCCACTGCGGACGGGCCGCTACCAAA 24 176 0 GCGGACGGGC 0.915028 -85 CCATCCGGTTGCGGATAACGTCTCAGGGTC 26 74 0 GCGGATAACG 0.373133 -227 GGCGCTGACCTCCTGGGGCCGGC 27 4 1 GCTGACCTCC 0.709517 -194 GATCGGCGACGCTACCAACCAACCGGTAGG 27 142 0 GCTACCAACC 0.517032 -56 TACGAGCTGTGCGAACATCCGCTCAACGAT 28 39 1 GCGAACATCC 0.540948 -148 GCCCGGGTTCCCGGCCAGCGTTGTCATCCG 28 78 1 CCGGCCAGCG 0.951536 -109 TATTGCGGTCGCCGACCTGGACGTTGCCAT 29 117 0 GCCGACCTGG 0.41043 -184 GCCGATCTGACCGACCCGGAGAAGCAGATT 29 244 0 CCGACCCGGA 0.517893 -57 GTTATGACTACCTCCTCAGCGCACCCGAAA 29 274 0 CCTCCTCAGC 0.307606 -27 GCTCTATTGGGCGCCCGGGCGCG 30 32 1 GCGCCCGGGC 0.906689 -13 GCCGCGATTGCCGCACCTGGGCGTCTATAT 31 78 1 CCGCACCTGG 0.502288 -113 ACCCTCGCGGATCACCCGAACTCGGT 33 36 0 GCGGATCACC 0.752457 -16 CGCCGGCGAGCCGACCGCCTTTGGCCGAA 34 10 1 GCCGACCGCC 0.933571 -50 CCGTCCGACGGCGCCCCTGGTATCTTTCCG 35 75 0 GCGCCCCTGG 0.641986 -164 CTCGGGCCTCGCGACCCGCGATGTCGTGCT 37 11 0 GCGACCCGCG 0.927646 -20 AAACTGACCTGCGCATCGCCTCCGTAGCTC 39 120 1 GCGCATCGCC 0.796314 -181 ACGCCACCATGCTGACCTGCTATTTCCACA 39 212 0 GCTGACCTGC 0.543989 -89 TACCAGGTGCGCGGCCCGCGGGTAGGCCTG 42 48 0 GCGGCCCGCG 0.975379 -119 ACCGATGTTTCCGGCCTGCCAGACTGGACG 42 93 0 CCGGCCTGCC 0.602155 -74 TCCTCCTCACCCGGCTCGCCGGTTCACATC 42 144 0 CCGGCTCGCC 0.957936 -23 GACCGCCACCCCGCACCTGCGTAACATCGA 43 29 1 CCGCACCTGC 0.683176 -24 AGCGGCTGGCGCGCCCCGGCTACCTGCCGA 44 60 1 GCGCCCCGGC 0.94654 -76 GCCCCGGCTACCTGCCGACCAACCGCCCGG 44 72 1 CCTGCCGACC 0.837118 -64 GCCGAATCCGCCCGCCAAGGCGTTAGCTTT 46 84 1 CCCGCCAAGG 0.528024 -25 TCGCCCGGCTCCTCCTCACCCCG 49 4 0 CCTCCTCACC 0.476546 -198 CAGGCTCCAACCGAATCGCCCGGCTCCTCC 49 19 0 CCGAATCGCC 0.777859 -183 CGTTGCCGTCCCGGACCGCATCCCCCTACA 49 56 0 CCGGACCGCA 0.763424 -146 TTGAACAGCGGCCCATCGCCGTGCGACGTA 49 109 0 GCCCATCGCC 0.577226 -93 GACCGCAACAGCTGACAGCCCCTTCCGAAT 49 138 0 GCTGACAGCC 0.825256 -64 GACTTACCACCCTAACGACCCGGCGAAGTG 50 125 0 CCTAACGACC 0.441419 -20 TTGTTCTAACCCGGGCCACCTTTGATGCGG 51 44 1 CCGGGCCACC 0.524719 -87 TGCGGTAGTTCCCGCTGACGCATAATGTGA 51 81 1 CCCGCTGACG 0.405454 -50 GTTAGACTGTCCTAATGACCAGAAAA 52 7 0 CCTAATGACC 0.152172 -40 CCCGCCGGACAGCACGCGTTCGAC 54 5 1 CCGGACAGCA 0.574496 -210 CTGGCCGAGTGCTACCGTCGAACGCGTGCT 54 21 0 GCTACCGTCG 0.299386 -194 ACGGTAGCACTCGGCCAGCCGTCGACCCCG 54 33 1 TCGGCCAGCC 0.344151 -182 TTCCGCCCGCGCGAATCGGGGTCGACGGCT 54 49 0 GCGAATCGGG 0.403358 -166 TCTGCAACGGCCCGCCGGCGGAGTCTGGCA 54 87 1 CCCGCCGGCG 0.900225 -128 GACCAGGCCTGCCGCCAGCCTGATCGAGGG 54 134 1 GCCGCCAGCC 0.925419 -81 AACATCCAGCCCGGACCGGGCCAAAACCCA 54 183 0 CCGGACCGGG 0.915774 -32 CCGGACGCAGGCGGCCAGCAGTATGTCACC 55 31 0 GCGGCCAGCA 0.705797 -270 CCAGGAGCGTGCCGCTGGCCAGATCTCCCC 55 81 1 GCCGCTGGCC 0.787066 -220 CTTATCCCGCGCGGCCCGCGGGGAGATCTG 55 100 0 GCGGCCCGCG 0.975379 -201 AAACTCCCATCCCACCCGGCCATGGTAGGA 55 181 1 CCCACCCGGC 0.847465 -120 CGGGGTGATAGCGGACCACCCTATCTTACT 56 43 0 GCGGACCACC 0.930477 -37 CCGCTATCACCCCGATGACCGAGGCTGCCG 56 59 1 CCCGATGACC 0.408929 -21 TTGGAGCCCTCCTAATCTCCGTG 57 4 0 CCTAATCTCC 0.175372 -21 TAAGCGTCGCGCCGCTGACCCGCTCACGCG 60 21 0 GCCGCTGACC 0.551591 -87 GGAGCAACGGGCCGCCGAGCTGGGCGGAA 64 10 0 GCCGCCGAGC 0.725538 -182 TAAGTGTCCGCCGGACCGCACCGGAAGCAG 64 137 0 CCGGACCGCA 0.763424 -55 GACAAGTCCCCACCGTCGTTTTGCGACC 64 174 0 CCCACCGTCG 0.387204 -18 TGTCGCCGCCGCGGCCAGCATCTCCGGGTT 66 82 0 GCGGCCAGCA 0.705797 -155 CGCAGAGGACGCGCATAGGCGGCGCTGATC 66 135 0 GCGCATAGGC 0.444261 -102 ACGTGCCTAAGCTACCAGCCAGGTCACCGC 66 162 0 GCTACCAGCC 0.762858 -75 GGAACTAGCAGCGACCGGGGGGATGGTCAG 67 26 0 GCGACCGGGG 0.774703 -189 GTGGACGGCTGCTGACGGCCAGTGATAAAG 67 166 1 GCTGACGGCC 0.860983 -49 CAAGCTCACACCCGACGGGCAGAAAGAGGT 69 38 1 CCCGACGGGC 0.80039 -36 GAAAGAGGTGGCGGCCGTGGCAACC 69 59 1 GCGGCCGTGG 0.696895 -15 AACCGCTCCTCTCCCGTTGCCAGT 72 51 0 GCTCCTCTCC 0.333225 -14 GGGCTTGGTACCTGATCACGGGAGACATCT 73 108 0 CCTGATCACG 0.320981 -193 GACGCCTTGCCCGCACAGCCCGGCCCAGGT 73 149 0 CCGCACAGCC 0.89508 -152 TGCGCCCTTCGCTCACCGGGGCATTAGATG 73 200 0 GCTCACCGGG 0.513368 -101 TGTAGGCTAACCTACCAAGCACTTGCTTTG 74 24 0 CCTACCAAGC 0.382613 -24 CACCAGTAGCGCTCCCGACGCACCACCTCG 75 24 0 GCTCCCGACG 0.464989 -248 TTTCCCACCTCCCGACAGCCGAGACGACGA 75 135 1 CCCGACAGCC 0.874738 -137 TATCGGCGCGGCGGATCGCGTTGGGGCACC 76 15 0 GCGGATCGCG 0.810419 -286 GCTCACGCCAGCCGATCTCCGTTGCCGGCC 76 87 1 GCCGATCTCC 0.409154 -214 CTTGCAGCGTGCGGCTGGCATTGTGCCGAG 76 136 0 GCGGCTGGCA 0.416801 -165 CGCTGCAAGGCCGACCAACGTGTGATGTGT 76 157 1 CCGACCAACG 0.678928 -144 CAGTGCAATCGCTGACCAGGATGCAGTCAT 76 215 0 GCTGACCAGG 0.447791 -86 GGATGTGAGCCTAACCGCGCGACGATACA 76 282 0 CCTAACCGCG 0.669437 -19 GCGTTGGCGGCCGGACCGGGCCGAAGATGG 77 15 0 CCGGACCGGG 0.915774 -229 CGCTGTCGACCCGAACAACCGGTTACAACT 77 47 1 CCGAACAACC 0.682203 -197 TTCGCACACCGCACCAGGCTCGCCGCCC 78 9 1 CCGCACCAGG 0.608104 -100 GAGTCTGGTGCCGCGCCGCCACGCCAACAC 78 68 1 CCGCGCCGCC 0.586765 -41 CCGATTCGACCCTGACCGGC 79 1 0 CCTGACCGGC 0.853081 -39 GCCGTGGCCACCGACTCGGCGACAACCTCC 80 15 1 CCGACTCGGC 0.782696 -71 GGCCCCGCATCCTCACCGCCCTTAACCGCG 80 47 1 CCTCACCGCC 0.851238 -39 AACCGCGTCGCCTACCATCGAGCCTC 80 70 1 CCTACCATCG 0.278452 -16 CGGTGGACCGCCGCCTAGCGTCCATCGTCC 83 22 0 CCGCCTAGCG 0.656197 -267 CGACTCGACACCGCCCCGCGTACGTTGATG 83 62 1 CCGCCCCGCG 0.952573 -227 CTCGGCCGGCTCTGCCGGCGGCCAC 83 274 0 CCGGCTCTGC 0.706603 -15 TCATCCGATAGCGGCCAGGCAGCTCGCATC 84 21 0 GCGGCCAGGC 0.94538 -177 GCACGACATCGCGACTCGGGCGAAGCCGCG 84 67 1 GCGACTCGGG 0.587306 -131 CTCTACGGTACCGGCCCGCTACGCGGCTTC 84 88 0 CCGGCCCGCT 0.517069 -110 GCGCGATAGCGCGGCCATCCCGCCCGTTGC 84 126 0 GCGGCCATCC 0.884577 -72 TGGTTAGCTACCTGACGGGCTAGGGGTTGG 85 107 1 CCTGACGGGC 0.776359 -73 TCAGACCGCCCCGGCCAACCCCTAGCCCGT 85 121 0 CCGGCCAACC 0.933159 -59 TGAACGACCGCCGGATAAGGGTTTCGGCGG 86 137 1 CCGGATAAGG 0.256272 -158 CCCGCATCAAGCGCACCGCCGAAACCCTTA 86 152 0 GCGCACCGCC 0.945095 -143 GGGGTGCTGCCCCGCCGGCCGGTGGTCGGG 87 36 1 CCCGCCGGCC 0.950686 -53 CACCGGCCGACCGACCCGCCCGACCACCGG 87 54 0 CCGACCCGCC 0.970104 -35 CAAACGACCTCCGGCCAACCACACTGGTCG 88 158 1 CCGGCCAACC 0.933159 -106 CACCGCAGGTGCGCATGGCCGACCAGTGTG 88 177 0 GCGCATGGCC 0.682088 -87 ********** Masking position 2 Map Score: 116.446 Number of sites scoring better than the average of aligned sites = 71821 Number in coding regions = 66800 Number in noncoding regions = 5021 Number of orfs with sites within 600 bp upstream = 1547 Fraction of orfs with sites within 600 bp upstream = 0.248474 Motif number 3 CTCGCCAGGCTAACCGGTGGCG 2 3 1 CGCCAGGCTA 0.821699 -84 CACCGGCATCACGAGAACCA 5 1 1 CACCGGCATC 0.844675 -42 ACTGTGGCGAAGCCAGCATCAACGACGTGC 7 25 0 AGCCAGCATC 0.585689 -276 ACGCCGGCCAATTGTATGGTC 10 2 1 CGCCGGCCAA 0.829848 -42 CACGAAACACCGGACGAGTATGAGGCC 11 8 1 CACCGGACGA 0.405813 -23 TCACCCATTTCGCCGGCCATCCGCTAGCCA 16 17 1 CGCCGGCCAT 0.731255 -97 CTCCCCGGGACGGCGGCCTGGCCAAGCTCT 17 28 1 CGGCGGCCTG 0.796763 -69 AGCGCGGCGAAGCCGGGCGTGGCGGGTCGC 18 30 1 AGCCGGGCGT 0.57416 -48 TAATCCTCCGCACCAGCAGCAAATTTCACG 19 15 1 CACCAGCAGC 0.842012 -180 CGAATACGGACGGCAGCATCCCGTGCCGCG 19 114 1 CGGCAGCATC 0.584541 -81 GATCACGTCCGGCCAGCCGCGGCACGGGAT 19 131 0 GGCCAGCCGC 0.971481 -64 TCCCCGCCGCCACCGGCTTGCACAGGACAA 22 184 1 CACCGGCTTG 0.538943 -22 CCAACAGGTTGGCCGGGGGCCCTGTTAGGG 23 64 1 GGCCGGGGGC 0.846346 -93 AGCTGTGCCACACCGGGTGGATGCGGCCGC 26 179 1 CACCGGGTGG 0.665038 -122 GACCTCCTGGGGCCGGCAAAGCACCCGGCG 27 17 1 GGCCGGCAAA 0.546163 -181 CGCTACGGGACGCCGGGTGCTTTGCCGGCC 27 27 0 CGCCGGGTGC 0.945655 -171 TGACAACGCTGGCCGGGAACCCGGGCCTAC 28 74 0 GGCCGGGAAC 0.826235 -113 CTGCTGGCGGTGCCGGGCTCCGCGGCGCAA 29 11 0 TGCCGGGCTC 0.639839 -290 AGCCCGGCACCGCCAGCAGTGCCTCGCGGA 29 22 1 CGCCAGCAGT 0.747832 -279 TTTCCTCGTGGACCAGGATCATGCCAAGGT 29 70 1 GACCAGGATC 0.532745 -231 CCAACGAGGTAGCCAGCATGTGACGGGCGT 29 169 1 AGCCAGCATG 0.442414 -132 TGTGACGAAACGCCAGCCTGGGGAAACGAG 31 43 0 CGCCAGCCTG 0.940919 -148 TTTCGTCACACTCCGGCCGCGATTGCCGCA 31 63 1 CTCCGGCCGC 0.666923 -128 CACCGCAGCGCGCCGGGCATCCGACCGGTA 32 30 0 CGCCGGGCAT 0.685509 -195 ATGCGGTAGGCACCAGGCGGAGGAACC 41 99 1 CACCAGGCGG 0.846126 -17 CAGGCCTACCCGCGGGCCGCGCACCTGGTA 42 48 1 CGCGGGCCGC 0.806951 -119 CAGTCTGGCAGGCCGGAAACATCGGTCAGC 42 97 1 GGCCGGAAAC 0.430431 -70 AGCCGGGGCGCGCCAGCCGCTGCGAGCGTA 44 51 0 CGCCAGCCGC 0.98365 -85 CAACAATACCAACCGGGCGGTTGGTCGGCA 44 84 0 AACCGGGCGG 0.576273 -52 GGTGAGGAGGAGCCGGGCGATTCGGTTGGA 49 14 1 AGCCGGGCGA 0.707319 -188 CCTACATTGAGGCCAGGCTCCAACCGAATC 49 32 0 GGCCAGGCTC 0.927903 -170 CCCGCCGGACAGCACGCGTTCG 54 3 1 CGCCGGACAG 0.632216 -212 GGTAGCACTCGGCCAGCCGTCGACCCCGAT 54 35 1 GGCCAGCCGT 0.79395 -180 TGCCAGACTCCGCCGGCGGGCCGTTGCAGA 54 87 0 CGCCGGCGGG 0.872056 -128 CCAGGCCTGCCGCCAGCCTGATCGAGGGCT 54 136 1 CGCCAGCCTG 0.940919 -79 ATGTCACCATCGCCGGGATCATCACTGG 55 9 0 CGCCGGGATC 0.955417 -292 GGACGCAGGCGGCCAGCAGTATGTCACCAT 55 29 0 GGCCAGCAGT 0.626751 -272 GTCAGCCCGCGACCGGACGCAGGCGGCCAG 55 43 0 GACCGGACGC 0.656043 -258 TGACTCCGGTCACCAGGAGCGTGCCGCTGG 55 69 1 CACCAGGAGC 0.810226 -232 GGGGAGATCTGGCCAGCGGCACGCTCCTGG 55 81 0 GGCCAGCGGC 0.760666 -220 CAGATCTCCCCGCGGGCCGCGCGGGATAAG 55 100 1 CGCGGGCCGC 0.806951 -201 GTCCTACCATGGCCGGGTGGGATGGGAGTT 55 182 0 GGCCGGGTGG 0.846863 -119 ACGGCAGCCTCGGTCATCGGG 56 69 0 CGGCAGCCTC 0.763513 -11 AAGTAGTGTGCGGCAGCCGATAACATCGAC 58 26 1 CGGCAGCCGA 0.581218 -24 CGCCGGACCGCACCGGAAGCAGAAGGCCCA 64 129 0 CACCGGAAGC 0.594813 -63 TCGCCGCCGCGGCCAGCATCTCCGGGTTCA 66 80 0 GGCCAGCATC 0.875023 -157 CGACAGACTTGGGCGGCATCAGGTCAGGGA 66 107 1 GGGCGGCATC 0.632824 -130 TCTTTATCGACACCGGGTGCTGCCAGAGAA 66 191 1 CACCGGGTGC 0.779606 -46 CCGGGAAGACGGCCGGGTTGCCGTTGGCGT 67 120 1 GGCCGGGTTG 0.722855 -95 GGGGCCAGGCTAGAACACGTTT 70 3 1 GGCCAGGCTA 0.722946 -109 ATGCGCAATCCGCCAGAATGCCCAGAACGC 73 55 1 CGCCAGAATG 0.469111 -246 CCTGCACCTGGGCCGGGCTGTGCGGGCAAG 73 144 1 GGCCGGGCTG 0.93986 -157 GTCCATCCAGCGCCAGCAACGTCGCATCTA 73 176 1 CGCCAGCAAC 0.82893 -125 GCGCTTGCTCGGCCAGCTGCGACCTCGATG 73 261 0 GGCCAGCTGC 0.850414 -40 ATGTCGCTCACGCCAGCCGATCTCCGTTGC 76 82 1 CGCCAGCCGA 0.924228 -219 CGGTTACGGTGGCCGGCAACGGAGATCGGC 76 97 0 GGCCGGCAAC 0.855817 -204 CTCGGCACAATGCCAGCCGCACGCTGCAAG 76 136 1 TGCCAGCCGC 0.684883 -165 TGCAATCGCTGACCAGGATGCAGTCATAGC 76 212 0 GACCAGGATG 0.390223 -89 GCGACGATACAGCCGGCATGGCAGAGGTTG 76 263 0 AGCCGGCATG 0.631886 -38 TCGCACACCGCACCAGGCTCGCCGCCCCCA 78 12 1 CACCAGGCTC 0.822085 -97 GGCGGCGCGGCACCAGACTCCGATCGGATC 78 58 0 CACCAGACTC 0.423425 -51 TCCACCGATGAACCGGGCGACTCGACACCG 83 45 1 AACCGGGCGA 0.329432 -244 ACCCGGTGGCCGCCGGCAGAGCCGGCCGAG 83 269 1 CGCCGGCAGA 0.919998 -20 ATCCGATAGCGGCCAGGCAGCTCGCATCGG 84 19 0 GGCCAGGCAG 0.738954 -179 GTGCGGCAACGGGCGGGATGGCCGCGCTAT 84 121 1 GGGCGGGATG 0.436597 -77 ACACGGCCCGCGGCGGGAGCTAGGGACGGG 85 78 0 CGGCGGGAGC 0.837925 -102 GGCGGTCTGACGCCGGGTGCACACAGCCTT 85 141 1 CGCCGGGTGC 0.945655 -39 GGTGCTGCCCCGCCGGCCGGTGGTCGGGCG 87 38 1 CGCCGGCCGG 0.986496 -51 CATACGGAAACACCGGCCGACCGACCCGCC 87 64 0 CACCGGCCGA 0.842873 -25 TTATGTGTGGCGCCGGGTTCGCCGGCTCCC 88 31 1 CGCCGGGTTC 0.891388 -233 ********** Masking position 6 Map Score: 73.2343 Number of sites scoring better than the average of aligned sites = 35478 Number in coding regions = 33263 Number in noncoding regions = 2215 Number of orfs with sites within 600 bp upstream = 1050 Fraction of orfs with sites within 600 bp upstream = 0.168648 Motif number 4 CTCGCCAGGCTAACCGGTGGCGCCGACGG 2 3 1 CGCTACCGGG 0.695944 -84 TCTGGACGTACGCGATCACCGCCGCTGTGCGGCGAGG 3 63 1 CGGCGCCGCG 0.990069 -39 CCGAGACCTAACCGGCGGCCCCGAAGCG 4 2 1 CGGACCGGCG 0.636474 -87 CCAGCATCAACGACGTGCCGATCGCCGAATCC 7 6 0 CGCCATCGCG 0.895223 -295 GTGCCGTAGCTGCGATACCACTGGCCGTTGCGGTCAC 7 58 1 TGGCCTGGCG 0.576422 -243 TAGTCGAGCTCGCGCTGCCACTTGCGGGTCAGTTGAA 7 163 1 CGGCCTTGCG 0.872241 -138 TCCATTCCGCCACGATATCTACCGGCGCTAGCAGACG 7 267 0 CAGCACCGGG 0.470417 -34 AACCGCAGCCTGCCAAAGCCATCGCTGTACCGAGGCG 9 37 0 TGCCATCGCG 0.475287 -56 GGTAGGGTGACGCCATGACCGCCGGCGACGATGCCGA 12 45 1 CGCCGCCGGG 0.981929 -54 GTCACTGATGCTAGGCCGCAATCGGTGTCTTGCGGGG 14 11 1 CTGCATCGGG 0.710631 -84 TTGATCAGTTCGGGGGATCGGCCGTTGAGGGCCATAC 15 104 0 CGGCGCCGTG 0.903307 -38 TTAACGTTGGCTAGCGGATGGCCGGCGAAATGGGTGA 16 17 0 CTGTGCCGGG 0.595798 -97 AAGCACCTTCCAAGCTAACAACCGGTGGGTCGGTTAT 16 53 0 CAGCACCGGG 0.470417 -61 GCCGCCGTCCCGGGGAGCCAATGGGAGCCGCACG 17 8 0 CGGCATGGGG 0.913074 -89 CGATCGCGAGCGCGGCGAAGCCGGGCGTGGCGGGTCG 18 22 1 CGGACCGGGG 0.736466 -56 AGTCAGCGCTCGTGAAATTTGCTGCTGGTGCGGAGGA 19 18 0 CGGTGCTGCG 0.676595 -177 CCTCGGATCACGTCCGGCCAGCCGCGGCACGGGATGC 19 129 0 CGCCGCCGCG 0.971432 -66 CTTCAAGCCCCGCGGCACCTACCGTTGACTT 20 11 1 CGGCACCGTG 0.728575 -21 ATGGCTAGTACGCGACAACACCCGGGGGTAAGCG 22 8 0 CGGCCCCGGG 0.989008 -198 GGTCGCCTTGCGAGCCATCCGCCACAGTTACTAGGAT 22 131 1 CGGCGCCACG 0.884629 -75 ACAGGTTGGCCGGGGGCCCTGTTAGGGTGCCGGTACG 23 67 1 CGGCGTTAGG 0.599219 -90 CCTGCCTCAGCGTCGCAGCCGTCGTTGGCGGCGAGCA 24 125 1 CGCCGTCGTG 0.735965 -136 CACCGGTGACCGTGACTTTGGTAGCGGCCCGTCCGCA 24 160 1 CGGTGTAGCG 0.329516 -101 CCGAATACTACGTGGCACCCACTGCGGACGGGCCGCT 24 182 0 CGGCACTGCG 0.799528 -79 GAAGTTGCCACTACCATCCGGTTGCGGATAACGTCTC 26 80 0 CTCCGTTGCG 0.202243 -221 TGGATGCGGCCGCGGAGTTAATCGGCGGTCTCGATAC 26 196 1 CGGTATCGGG 0.851184 -105 AATAGGTAGGCGGTGCCGAAATCGGCGACTCGCACGG 26 239 0 CGTAATCGGG 0.292399 -62 CTCCTGGGGCCGGCAAAGCACCCGGCGTCCCGTAGCG 27 20 1 CGCCCCCGGG 0.968422 -178 CGGCCCGGTCTGCGCCGTCCATTGGAGTAGAGTCCGT 27 59 0 TGGCATTGGG 0.371846 -139 GTAGTAGGCCCGGGTTCCCGGCCAGCGTTGTCATCCG 28 71 1 CGGCGCCAGG 0.924765 -116 AGGGCATCCGCGAGGCACTGCTGGCGGTGCCGGGCTC 29 21 0 CGGTCTGGCG 0.659325 -280 CCAAGGTGGTCGTGATACCACTCGATGGCAACGTCCA 29 93 1 CGGCCTCGAG 0.870588 -208 TCGATCACGTCGGTATTGCGGTCGCCGACCTGGACGT 29 123 0 CGTCGTCGCG 0.887572 -178 CTGGTTGTACCGGTCGGATGCCCGGCGCGCTGCGGTG 32 23 1 CGTTCCCGGG 0.528965 -202 CGACCGAGTTCGGGTGATCCGCGAGGGT 33 34 1 CGGCGCGAGG 0.762957 -18 CGGCCAAAGGCGGTCGGCTCGCCGGCG 34 1 0 CGTTGCCGGG 0.65753 -59 ATCTATGACACGGCATTGCTGTCGATGCT 35 3 0 CGCCGTCGAG 0.803181 -236 CTGACGGGTATGTGGTTGTTCTGGCCGAGTCCGCGG 36 10 0 TGGTCTGGCG 0.170202 -66 CGCCTCGTTATGGGTCGACGCCCAGAGTCGCCTTCAA 39 252 1 TGGCCCCAGG 0.423105 -49 TACGCAGGTGCGGGGTGGCGGTCGTGGCAGCATTGAG 43 15 0 CGGCGTCGTG 0.89085 -38 AAGCTCGCCGTGGCGTTACGCTCGCAGCGGCTGGCGC 44 35 1 TGCCCTCGCG 0.63962 -101 AGTCAGCTTCCGGGCCGAATGTCGGTGGGAGGTCACC 47 39 1 CGGAGTCGGG 0.943283 -28 CGGGGTGAGGAGGAGCCGGGCGATTCGGTTGG 49 6 1 TGGACCGGGG 0.229259 -196 GCCCCCATTTCGGGCCCGAAATGGGGGCTTTTGCGTC 50 44 1 CGGAATGGGG 0.555833 -101 CGGTGAATTCTGCGGTAGTTCCCGCTGACGCATAATG 51 71 1 TGGTCCCGCG 0.472736 -60 CTGCTGGCCGCCTGCGTCCGGTCGCGGGCTGACTCCG 55 40 1 CCGCGTCGCG 0.586113 -261 CCGCGGGCCGCGCGGGATAAGCCGCGGAGCAAGAAAT 55 109 1 CGGAGCCGCG 0.922335 -192 GTTCTTGCACTGAGTTCACGCTCGGCGTAATAACGGC 55 223 0 TGGCCTCGGG 0.892829 -78 AAAATCGCACTGGGTACACGCTCGGCGAAAGGATGGT 55 268 1 TGGCCTCGGG 0.892829 -33 ATCATCGAGCCTACCGCTGGCGACCTGGCCCA 59 19 0 CGGCGCTGGG 0.956991 -22 CGCCATCTCCGTCGGCGTTGACCCCCG 65 1 1 CGCCGTCGGG 0.97932 -41 GACGCGGTGCCGCCGCGGGCGATACGCTCCG 66 5 1 CGTCGCGGGG 0.790724 -232 GGCCGTCCTCCTCGTTGACGGTCGGAGCGTATCGCCC 66 27 0 CTGCGTCGGG 0.895254 -210 TGTGCCGCGTCTCGAGTTCTCTGGCAGCACCCGGTGT 66 200 0 CTGCCTGGCG 0.440096 -37 GAACTCGAGACGCGGCACAGGTCGGCACC 66 218 1 CGGAGTCGGA 0.226998 -19 TAGCAGCGACCGGGGGGATGGTCAGGGTAAGGAGGGT 67 14 0 CGGTGTCAGG 0.618097 -201 CTGCTACATCCGAGGAAACGGTCGCTGGATTCAGAGA 67 67 1 CGGCGTCGCG 0.988649 -148 GTGTTACAACCGGGAAGACGGCCGGGTTGCCGTTGGC 67 111 1 CGGCGCCGGT 0.615405 -104 TTGTCGACAGCTAGTGGACGGCTGCTGACGGCCAGTG 67 153 1 CTGCGCTGCG 0.459366 -62 GATAAAGACGCGATCATTCAATCGGAGGCAGCTGAG 67 189 1 CGTCATCGGG 0.784312 -26 CCCGTGTCGACGACGATGCGGTGGGGGTACCACTCAC 72 16 1 CGCCGTGGGG 0.925811 -49 GCATTAGATGCGACGTTGCTGGCGCTGGATGGACGCC 73 173 0 CGCCGGCGCG 0.765939 -128 GGTGGTGCGTCGGGAGCGCTACTGGTGTTCGTGTTCG 75 27 1 CGGCACTGGG 0.864742 -245 CACATGTCGTCGTCTCGGCTGTCGGGAGGTGGGAAAT 75 134 0 CGCCGTCGGA 0.457077 -138 TGTGCCGAGTCGTGCTGACGGTTACGGTGGCCGGCAA 76 108 0 CGGCGTTACG 0.482583 -193 GTTACAACTGCGTGACGAATATCGATGACGGCTGCAC 77 68 1 CGGAATCGAG 0.290275 -176 CGGGCGCAGGCGACAACGCAGTCACCGAAGCGCCGCG 77 203 1 CGCCGTCACG 0.695611 -41 AGACTTCCCCCGATGATCCGATCGGAGTCTGGTGCCG 78 44 1 CGTCATCGGG 0.784304 -65 GATGCGGGGCCGCGGAGGTTGTCGCCGAGTCGGTGGC 80 21 0 CGGTGTCGCG 0.921734 -65 TGGTAGGCGACGCGGTTAAGGGCGGTGAGGATGCGGG 80 50 0 CGGAGGCGGG 0.646618 -36 GGTGTCGAGTCGCCCGGTTCATCGGTGGACCGCCGCC 83 37 0 CGCTATCGGG 0.6618 -252 TACCGCTGTTCGAGGCCGCCATCAACGTACGCGGGGC 83 74 0 CGGCATCAAG 0.208901 -215 AGGACCCAGTCGGGTCAAAGCTGGCTGCAAACTGCGT 83 173 1 CGGACTGGCG 0.604684 -116 CGTTCGCCGACGTGAGCGCGGTAGGGGTTGATGTGCG 83 207 1 CGGCGTAGGG 0.839409 -82 TTGATGTGCGCGGGTAACCCGTTGGCGGAGCCGACAC 83 234 1 CGGCGTTGGG 0.951075 -55 GCGGGATGGCCGCGCTATCGCGCGGCGCGGGTGCACC 84 133 1 CGGCCGCGGG 0.89635 -65 ACCTGACGGGCTAGGGGTTGGCCGGGGCGGTCTGACG 85 116 1 CTGTGCCGGG 0.595878 -64 TTGGCCGGGGCGGTCTGACGCCGGGTGCACACAGCCT 85 133 1 CGTCCCGGGG 0.681082 -47 AGATCACAATTGAGCCGGCACTAGCGGTCGACACATG 86 44 1 TGGCCTAGCG 0.162869 -251 ATAAGGGTTTCGGCGGTGCGCTTGATGCGGGTGGACG 86 151 1 CGCCCTTGAG 0.242206 -144 GCGCTTGATGCGGGTGGACGCCCGAAGTTGTGGTTGA 86 168 1 CGGCCCCGAG 0.88506 -127 TCAAGCTCAACGTCCTCCCAGTCGGGGTGCTGCCCCG 87 13 1 CGCCGTCGGG 0.979459 -76 GTCGGGGTGCTGCCCCGCCGGCCGGTGGTCGGGCGGG 87 33 1 TGCCGCCGGG 0.852603 -56 ** * * ***** * Masking position 17 Map Score: 120.345 Number of sites scoring better than the average of aligned sites = 32096 Number in coding regions = 30499 Number in noncoding regions = 1597 Number of orfs with sites within 600 bp upstream = 882 Fraction of orfs with sites within 600 bp upstream = 0.141664 Motif number 5 CGCCGCACAGCGGCGGTGATCGCGTACGTCCA 3 65 0 CGGCGGGTCG 0.924298 -37 TGGCACGAAACGACGGCGAGCAGACGCAAAAC 7 203 1 CGACGGGGCA 0.462603 -98 CTCGACACGCCGACGAGAAGGGGGTTTTGCGT 7 226 0 CGACGAAGGG 0.548253 -75 GCGATGGCTTTGGCAGGCTGCGGTTAGTCGAA 9 49 1 TGGCAGCGCG 0.496943 -44 GCATCGTCGCCGGCGGTCATGGCGTCACCCTA 12 47 0 CGGCGGCTGG 0.961934 -52 AGCGCAGCGATGAGGAGGAGCGGCGCAT 12 81 1 TGAGGAGGCG 0.57156 -18 GCGGTTCGGTCAACGACGAGGGTGACGCTACT 14 57 0 CAACGAGGGG 0.327753 -38 GGATATGGAGCGATCGCGAGCGCGGCGAAGCC 18 12 1 CGATCGGGCG 0.397967 -66 ATCGCGAGCGCGGCGAAGCCGGGCGTGGCGGG 18 24 1 CGGCGAGCGG 0.811998 -54 GGATCACGTCCGGCCAGCCGCGGCACGGGATG 19 130 0 CGGCCACGCG 0.867387 -65 GGACGTGATCCGAGGGTGTGGGTCTCACCAGA 19 151 1 CGAGGGGGGG 0.966349 -44 GAGCCGACAGCGTCCTAGCGGGAGACGCTTGG 22 99 0 CGTCCTGGGG 0.306033 -107 CCTATCCGGGCGACGATGCGCGCCGCAGCGAT 23 21 1 CGACGAGGCG 0.829416 -136 TTAGCGCGAACGCGGGTCGGCGTCTCCAGTTT 24 59 1 CGCGGGCGCG 0.405092 -202 GATTCGTCAGCGAGGAGGCGGCG 24 248 1 CGAGGAGGGC 0.143147 -13 GGCGCTGACCTCCTGGGGCCGGCAAAG 27 6 1 TGACCTCGGG 0.513438 -192 CCCTGTTTCGCGACGGAGATCGCTTCCTGAGT 27 101 0 CGACGGGTCG 0.913886 -97 CAACGCTGGCCGGGAACCCGGGCCTACTACTG 28 69 0 CGGGAACGGG 0.577676 -118 TGTACCCGGATGACAACGCTGGCCGGGAACCC 28 82 0 TGACAAGTGG 0.337013 -105 CGCCCAGCGGTGCCCGCGGGGGCTAAGGTTTA 28 117 0 TGCCCGGGGG 0.593734 -70 GAGGCACTGCTGGCGGTGCCGGGCTCCGCGGC 29 15 0 TGGCGGGCGG 0.714915 -286 AGGAAATCAACGACGATCAGGGCATCCGCGAG 29 44 0 CGACGACGGG 0.953345 -257 AGTGGTATCACGACCACCTTGGCATGATCCTG 29 83 0 CGACCACTGG 0.850246 -218 AGCCAGCATGTGACGGGCGTGGACTTGATCGG 29 179 1 TGACGGCTGG 0.844691 -122 ACTGCTCTATTGGGCGCCCGGGCGCG 30 29 1 TGGGCGCGGG 0.754206 -16 CGTCACACTCCGGCCGCGATTGCCGCACCTGG 31 66 1 CGGCCGGTTG 0.439206 -125 CCCATATAGACGCCCAGGTGCGGCAATCGCGG 31 79 0 CGCCCAGGCG 0.549834 -112 AATACGCACATGAGAGTGATCGATATAGACAA 32 130 0 TGAGAGGTCG 0.190626 -95 CAAGCGAACCCGACCGAGTTCGGGTGATCCGC 33 24 1 CGACCGGTCG 0.904547 -28 GCCGGCGAGCCGACCGCCTTTGGCCGAATCTT 34 12 1 CGACCGCTTG 0.32729 -48 GATCACTTTCCGTCCGACGGCGCCCCTGGTAT 35 82 0 CGTCCGCGCG 0.491727 -157 AGCACGACATCGCGGGTCGCGAGGCC 37 5 1 CGACATGGGG 0.629344 -26 AAAAATTCCTCGACGGCCACCGTTAGATAAAC 39 92 1 CGACGGCCCG 0.603361 -209 AGACGCACCGCGGGGGCAATGGTATTCTCACC 40 18 1 CGGGGGATGG 0.368946 -65 CGATGTGAACCGGCGAGCCGGGTGAGGAGGAT 42 143 1 CGGCGACGGG 0.957376 -24 AGGTGCGGGGTGGCGGTCGTGGCAGCATTGAG 43 15 0 TGGCGGCTGG 0.85653 -38 CGGTCCGGGACGGCAACGGTGGCACACTGGGC 49 68 1 CGGCAAGTGG 0.702924 -134 CTGGGCTACACGGCCTACGTCGCACGGCGATG 49 94 1 CGGCCTCTCG 0.402437 -108 CCTAACGACCCGGCGAAGTGGGAACGAAATCC 50 113 0 CGGCGAGGGG 0.970565 -32 ATCAGGCTGGCGGCAGGCCTGGTCCTACAAAC 54 126 0 CGGCAGCTGG 0.798631 -89 TCTTAGCCCTCGATCAGGCTGGCGGCAGGCCT 54 138 0 CGATCAGTGG 0.21388 -77 GACATACTGCTGGCCGCCTGCGTCCGGTCGCG 55 34 1 TGGCCGCGCG 0.792572 -267 ATCTCCCCGCGGGCCGCGCGGGATAAGCCGCG 55 103 1 GGGCCGGGGG 0.480502 -198 AGTCCTACCATGGCCGGGTGGGATGGGAGTTT 55 181 0 TGGCCGGGGG 0.920515 -120 ATCGAGGAACCGCGTGAGCGGGTC 60 3 1 CGAGGACGCG 0.735422 -105 AGCAACGGGCCGCCGAGCTGGGCGGAA 64 6 0 CGCCGACGGG 0.739288 -186 GGTCGCAAAACGACGGTGGGGACTTGTC 64 174 1 CGACGGGGGA 0.642803 -18 GGGTCAACGCCGACGGAGATGGCG 65 3 0 CGACGGGTGG 0.971246 -39 TTGACCCCCGTGAGAGGGTGGGTC 65 28 1 TGAGAGGGGG 0.514615 -14 CGACCGTCAACGAGGAGGACGGCCATGTGGTT 66 40 1 CGAGGAGCGG 0.605044 -197 GCCGCGGCGGCGACAGACTTGGGCGGCATCAG 66 97 1 CGACAGCTGG 0.783145 -140 TCCTCTGCGGTGACCTGGCTGGTAGCTTAGGC 66 156 1 TGACCTGTGG 0.415344 -81 GAACTAGCAGCGACCGGGGGGATGGTCAGGGT 67 23 0 CGACCGGGGA 0.521678 -192 CAGAAAGAGGTGGCGGCCGTGGCAACC 69 57 1 TGGCGGCTGG 0.856443 -17 CCCGTGTCGACGACGATGCGGTGGGGGTACCA 72 16 1 CGACGAGGGT 0.338183 -49 GATTAGGCTATGACGACGCGCGGAAGAATATG 73 26 1 TGACGAGGCG 0.767498 -275 TCTGGGGTATCGGCGGAGAGTGCCTAGCGTTC 73 79 0 CGGCGGGGTG 0.738677 -222 GGTGCAGGATCGAGGGGCTTGGTACCTGATCA 73 120 0 CGAGGGCTGG 0.89972 -181 GCATTAGATGCGACGTTGCTGGCGCTGGATGG 73 178 0 CGACGTGTGG 0.830674 -123 CTCGATGGGGTGGGAATCCGGGAATTCGGTAC 73 236 0 TGGGAACGGG 0.243879 -65 CGGCCAGCTGCGACCTCGATGGGGTGGGAATC 73 250 0 CGACCTGTGG 0.750272 -51 CATGACCGCGCGAGGTGGTGCGTCGGGAGCGC 75 14 1 CGAGGTGGCG 0.671449 -258 TTTATCGGCGCGGCGGATCGCGTTGGGGCACC 76 15 0 CGGCGGTGCG 0.523576 -286 ATGTGCGATGTGGCGTCGTTCGTTGGCACCGG 76 52 0 TGGCGTGTCG 0.384167 -249 CGGTGGCCGGCAACGGAGATCGGCTGGCGTGA 76 89 0 CAACGGGTCG 0.209856 -212 CTAATGGGGGCGGCGAGCCTGGTGCGGTGTGC 78 14 0 CGGCGACTGG 0.911503 -95 TTAAGGGCGGTGAGGATGCGGGGCCGCGGAGG 80 40 0 TGAGGAGGGG 0.733595 -46 GGCCGTCTAATGACGAACATCGTGCCGCTATC 81 28 0 TGACGACTCG 0.516578 -40 AGGCAGCGATCGTCGAACGGGGCGCTACCGCT 82 17 0 CGTCGACGGG 0.578575 -63 TATTTCCCCGAGGACGATGGACGCTAGGCG 83 9 1 CGAGGAGTGG 0.842263 -280 GGCGGTCCACCGATGAACCGGGCGACTCGACA 83 40 1 CGATGACGGG 0.40012 -249 CCGGCTCTGCCGGCGGCCACCGGGTGTCGGCT 83 262 0 CGGCGGCCCG 0.707638 -27 GGTGCCGATGCGAGCTGCCTGGCCGCTATCGG 84 15 1 CGAGCTCTGG 0.443901 -183 CCGGTACCGTAGAGGGAGTGCGGCAACGGGCG 84 104 1 AGAGGGGGCG 0.150223 -94 AGTGCGGCAACGGGCGGGATGGCCGCGCTATC 84 120 1 CGGGCGGTGG 0.897554 -78 CTAGCGGCGGCGACCACAAGGGTCACCGCCGC 85 33 0 CGACCAAGGG 0.423674 -147 GTTAGCTACCTGACGGGCTAGGGGTTGGCCGG 85 109 1 TGACGGCAGG 0.167902 -71 CAGCCTTACACGACGGAGGTGGACAC 85 164 1 CGACGGGTGG 0.969219 -16 GGGGCAATGAGCGCGGGGGCAATACTGAC 86 8 1 TGAGCGGGGG 0.803934 -287 ATAAGGGTTTCGGCGGTGCGCTTGATGCGGGT 86 151 1 CGGCGGGGCT 0.400453 -144 GCGCTGGGCCCGGCAGTGCTCGTGTAGTCAAC 86 200 0 CGGCAGGTCG 0.72916 -95 TGCGTTGAGATGAGGATGAGGGAAGCAAGA 86 275 1 TGAGGAGGGG 0.733601 -20 GCCCGACCACCGGCCGGCGGGGCAGCACCCCG 87 35 0 CGGCCGCGGG 0.970974 -54 GGCCGGTGGTCGGGCGGGTCGGTCGGCCGGTG 87 52 1 CGGGCGGCGG 0.71477 -37 CTCGCGACCGCGGGAGCCGGCGAACCCGGCGC 88 40 0 CGGGAGCGCG 0.60886 -224 CTCGTACCATCGAGCGTGTGGGTTCATGCCAT 88 75 0 CGAGCGGGGG 0.945637 -189 TGCGCATGGCCGACCAGTGTGGTTGGCCGGAG 88 166 0 CGACCATTGG 0.190463 -98 TGGCAGCTCGTGGCGGTCATGGCCCGAACGGG 88 210 0 TGGCGGCTGG 0.856587 -54 AGGGTAACCGACCTTGCTGGCAAAACCCGA 88 244 0 CGACCTGTGG 0.748251 -20 ****** * *** Masking position 2 Map Score: 92.3712 Number of sites scoring better than the average of aligned sites = 43863 Number in coding regions = 41457 Number in noncoding regions = 2406 Number of orfs with sites within 600 bp upstream = 1148 Fraction of orfs with sites within 600 bp upstream = 0.184388 Motif number 6 AGCGCTATCCGACGATCAGCAGCGCAACCATGGCC 3 24 1 GCGATCGCGC 0.807597 -78 TCTGGACGTACGCGATCACCGCCGCTGTGCGGCGA 3 63 1 CCGATCCCGC 0.692645 -39 ATCCCGTGACCGCAACGGCCAGTGGTATCGCAGCT 7 65 0 CCAACCGTGG 0.666785 -236 GCGTCTGCTCGCCGTCGTTTCGTGCCACCGTTCAA 7 195 0 GCGTCTGTGC 0.313478 -106 CCCTCGACACGCCGACGAGAAGGGGGTTTTGCGTC 7 225 0 GCGACAGGGG 0.352276 -76 TCCATTCCGCCACGATATCTACCGGCGCTAGCAGA 7 269 0 CCGATTCCGG 0.769364 -32 GCGAAATTGCGCCGACGCATACTGGACCG 9 5 0 GCGACTCTGG 0.93583 -88 AAGTCAACGGTAGGTGCCGCGGGGCTT 20 15 0 GCAACAGTGC 0.258044 -17 ATGGCTAGTACGCGACAACACCCGGGGGTAAGCG 22 10 0 CCGACACCGG 0.887624 -196 GGCGGTCGAGCCTATCCGGGCGACGATGC 23 5 1 GCGAGACCGG 0.430799 -152 CTATCCGGGCGACGATGCGCGCCGCAGCGATACCT 23 22 1 GCGATCCCGC 0.794414 -135 AGCCGTCGTTGGCGGCGAGCACCGGTGACCGTGAC 24 141 1 GCGGCCCCGG 0.933851 -120 TATCGAGACCGCCGATTAACTCCGCGGCCGCATCC 26 197 0 GCGATCCCGC 0.794365 -104 GTACCCGGATGACAACGCTGGCCGGGAACCCGGGC 28 78 0 GCAACGCCGG 0.401899 -109 CAAGTCCACGCCCGTCACATGCTGGCTACCTCGTT 29 171 0 CCGTCTCTGG 0.327697 -130 CGTCAACCCTTCCTGGTTGTACCGGT 32 2 1 GCAACTCTGG 0.701641 -223 CGGTCGGATGCCCGGCGCGCTGCGGTGGCGCCCTT 32 33 1 CCGGCCGCGG 0.899431 -192 CGCCGGCGAGCCGACCGCCTTTGGCCGAATCTTC 34 10 1 GCGACCTTGG 0.404134 -50 AAGTGATCCAGACAACAGGTCGCGGGACGATCTCA 35 106 1 GCAACTGCGG 0.897573 -133 TGACGTGGCGGTAGACCTTTCGCGCGTGTGGCGTC 39 54 1 GAGACTGCGC 0.709945 -247 GGAAAAATTCCTCGACGGCCACCGTTAGATAAACT 39 90 1 CCGACCCCGT 0.494333 -211 GGTCCCTAGACGCACCGCGGGGGCAATGGT 40 6 1 CAGACCGCGG 0.792196 -77 GGTCTCCGTACACGACTCATGCTGGACACTTCGGT 41 14 1 CCGACTCTGG 0.894801 -102 CCGGCTACCTGCCGACCAACCGCCCGGTTGGTATT 44 75 1 GCGACCGCCC 0.717167 -61 CAGCTTCCGGGCCGAATGTCGGTGGGAGGTCACCT 47 42 1 GCGAACGTGG 0.303606 -25 GCGAATCGGGGTCGACGGCTGGCCGAGTGCTACCG 54 34 0 GCGACTGCCG 0.789624 -181 TTTCTTGCTCCGCGGCTTATCCCGCGCGGCCCGCG 55 110 0 CCGGCTCCGC 0.755076 -191 GAAGAATCAGCCCGACAGGAGGCGCA 60 92 1 CCGACAGCGC 0.811864 -16 GGTGCCGACCTGTGCCGCGTCTCGAGTT 66 219 0 GCGACTCCGC 0.961779 -18 CTACATCCGAGGAAACGGTCGCTGGATTCAGAGAC 67 70 1 GAAACCCTGG 0.220485 -145 GGCGTTGGTTGTCGACAGCTAGTGGACGGCTGCTG 67 145 1 GCGACTGTGG 0.940627 -70 CGTGTTCGCTGACGACATGTAGCGGGCAGCTCCTC 75 56 1 GCGACTGCGG 0.981932 -216 CAGCCGAGACGACGACATGTGCTGGAGTTATTGCC 75 150 1 GCGACTCTGG 0.935835 -122 GGTGCCCCAACGCGATCCGCCGCGCCGATAAAGCT 76 15 1 CCGATCGCGC 0.709971 -286 GTCCGCCGACCTTTCGCGGCGCTTCGGTG 77 225 0 GCGACTGCGG 0.981932 -19 TACCTGTGCCGACAGGTGCAGGTGTTGGCGTG 78 87 0 GCGACTCAGG 0.555149 -22 CCACCGACTCGGCGACAACCTCCGCGGCCCCGCAT 80 22 1 GCGACCCCGC 0.971263 -64 CGTTGGCGGAGCCGACACCCGGTGGCCGCCGGCAG 83 253 1 GCGACCGTGG 0.955116 -36 GCCAGGTGCCGATGCGAGCTGCCTGGCCGCTA 84 8 1 GCGATACTGC 0.184969 -190 CGACTCGGGCGAAGCCGCGTAGCGGGCCGGTACCG 84 78 1 GAGCCTGCGG 0.301373 -120 GCGCGGCCATCCCGCCCGTTGCCGCACTCCCTCTA 84 113 0 CCGCCTCCGC 0.565383 -85 TCCGAACAGACACAACATCTAGCGGCGGTGACCCT 85 12 1 CCAACTGCGG 0.836351 -168 ACGGGATTTAGGAAACATCTAGCGGCGGCGACCAC 85 48 0 GAAACTGCGG 0.439677 -132 TAGCTAACCACACGGCCCGCGGCGGGAGCTAGGGA 85 82 0 CCGGCCGCGG 0.899431 -98 CTGGGCATGTGTCGACCGCTAGTGCCGGCTCAATT 86 51 0 GCGACTGTGC 0.888493 -244 TGGTTGACTACACGAGCACTGCCGGGCCCAGCGCC 86 198 1 CCGAGTCCGG 0.619855 -97 GACCGACCCGCCCGACCACCGGCCGGCGGGGCAGC 87 41 0 CCGACCGCCG 0.746208 -48 GCAATCGCGACCAAACGACCTCCGGCCAACCACAC 88 147 1 CAAACCCCGG 0.36138 -117 AACCCGATTTGGCAGCTCGTGGCGGTCATGGCCCG 88 216 0 GCAGCTGCGG 0.647993 -48 * **** * **** Masking position 14 Map Score: 49.5667 Number of sites scoring better than the average of aligned sites = 16818 Number in coding regions = 15651 Number in noncoding regions = 1167 Number of orfs with sites within 600 bp upstream = 745 Fraction of orfs with sites within 600 bp upstream = 0.119659 Motif number 7 CGGGCTGCACTACCCGCGTCGCGCTGC 2 70 0 CGCTACCCGC 0.976528 -17 GTCTGGACGTACGCGATCACCGCCGCTGTGCGG 3 62 1 AGATCACCGC 0.76581 -40 CGTTTCGGATCTCCTCGCCGCACAGCGG 3 84 0 CGCTCCTCGC 0.864622 -18 CGGTGATAACCGCGATCCTAGTC 6 82 0 CGATAACCGC 0.751344 -13 CCCGCCACGCCCGGCTTCGCCGCGCTCGCGATC 18 23 0 CGTTCGCCGC 0.955459 -55 ATCCAAGTATCGGGATTCCCCGCCGCCACCGGC 22 168 1 CGTTCCCCGC 0.992319 -38 TCACGGTCACCGGTGCTCGCCGCCAACGACGGC 24 142 0 CGCTCGCCGC 0.962042 -119 ACAATCACAGCCGAATTCCGCGCTGAAGTTGCC 26 108 0 CGTTCCGCGC 0.936486 -193 AGTAGTAGGCCCGGGTTCCCGGCCAGCGTTGTC 28 70 1 CGTTCCCGGC 0.889035 -117 CGACTGCTCCTGTTTTCCCAGCAATTAGCGAT 31 169 0 CGTTCCCAGC 0.905052 -22 ATCACGGTGCCAGGCCTACCCGCGGGCCGCGCA 42 38 1 CGCTACCCGC 0.976528 -129 GTCAGCAGATAGGCTTTACCAGCGATGTGAACC 42 121 1 AGTTACCAGC 0.433833 -46 GGAACTACCGCAGAATTCACCGCATCAAAGGTG 51 60 0 CGTTCACCGC 0.974281 -71 TGCCGCTGGCCAGATCTCCCCGCGGGCCGCGCG 55 90 1 CGCTCCCCGC 0.993492 -211 GGCATCAGGTCAGGGATCAGCGCCGCCTATGCG 66 121 1 CGATCAGCGC 0.558544 -116 CCAGTAAAACATGCCTTCACCGCAGACAAAAGG 70 64 0 AGTTCACCGC 0.917854 -48 CCAGAACGCTAGGCACTCTCCGCCGATACCCCA 73 76 1 AGCTCTCCGC 0.732669 -225 CGCTGGATGGACGCCTTGCCCGCACAGCCCGGC 73 155 0 AGTTGCCCGC 0.854677 -146 CGCCCGGAAGAGGAGCTGCCCGCTACATGTCGT 75 67 0 AGCTGCCCGC 0.874193 -205 GGCTCCGCCAACGGGTTACCCGCGCACATCAAC 83 233 0 AGTTACCCGC 0.912123 -56 GAAACACCGGCCGACCGACCCGCCCGACCACCG 87 55 0 CGCGACCCGC 0.791254 -34 ATGGCCCGAACGGGTTTCACCGCAGGTGCGCAT 88 191 0 CGTTCACCGC 0.974281 -73 * * ******** Masking position 3 Map Score: 31.8511 Number of sites scoring better than the average of aligned sites = 1845 Number in coding regions = 1714 Number in noncoding regions = 131 Number of orfs with sites within 600 bp upstream = 123 Fraction of orfs with sites within 600 bp upstream = 0.0197559 Motif number 8 ACGGCACCGAACTGTGGCGAAGCCAGCATCAACG 7 31 0 ACTGGGAAGC 0.80939 -270 CCATCGCTGTACCGAGGCGAAATTGCGCCGACGC 9 22 0 ACCGGGAAAT 0.446736 -71 TCGCAAGGCGACCGAGCCGACAGCGTCCTAGCGG 22 110 0 ACCGGGACAC 0.835475 -96 ACAGCCGAATTCCGCGCTGAAGTTGCCACTACCA 26 101 0 TCCGGGAAGT 0.863735 -200 GCTGTGCCACACCGGGTGGATGCGGCCGCGGAGT 26 180 1 ACCGGGATGG 0.525581 -121 AGCGTTGTCATCCGGGTACACGATAAACCTTAGC 28 94 1 TCCGGCACGT 0.918598 -93 CTAAGAGAACACTGTGAAGACGGTTTTGCGCGGT 35 211 0 ACTGGGACGT 0.876559 -28 TCGTATTGGTATTGCGATCACGGTGCCAGGCCTA 42 22 1 ATTGGCACGT 0.150004 -145 AACAATACCAACCGGGCGGTTGGTCGGCAGGTAG 44 79 0 ACCGGGTTGT 0.390616 -57 TCAGTCAGCTTCCGGGCCGAATGTCGGTGGGAGG 47 37 1 TCCGGGAATT 0.248153 -30 GCTGTTGCGGTCTGAGTGGTCGGTAGTTGTCAGT 49 156 1 TCTGGGTCGT 0.607795 -46 TTCTCGTTTGACTGTGACGACGCGGAGCCGAC 51 9 0 ACTGGGACGG 0.820557 -122 CCCGCGCGAATCGGGGTCGACGGCTGGCCGAGTG 54 40 0 TCGGGGACGC 0.824917 -175 GCGTTCTTGCACTGAGTTCACGCTCGGCGTAATA 55 228 0 ACTGGCACGT 0.873623 -73 GAAAAATCGCACTGGGTACACGCTCGGCGAAAGG 55 266 1 ACTGGCACGT 0.874406 -35 ATGGCCGTCCTCCTCGTTGACGGTCGGAGCGTAT 66 32 0 TCCTGGACGT 0.50267 -205 ACTAGCAGCGACCGGGGGGATGGTCAGGGTAAGG 67 19 0 ACCGGGATGT 0.850151 -196 CCCTGCTACATCCGAGGAAACGGTCGCTGGATTC 67 65 1 TCCGGAACGT 0.557694 -150 ACGTGTTACAACCGGGAAGACGGCCGGGTTGCCG 67 109 1 ACCGGGACGC 0.984549 -106 ATGCCTTTTGTCTGCGGTGAAGGCATGTTTTACT 70 61 1 TCTGGGAAGC 0.713231 -51 AATGCCCCGTGTCGACGACGATGCGGTGG 72 6 1 CCCGGGACGC 0.875733 -59 CCTCCCGACAGCCGAGACGACGACATGTGCTGGA 75 142 1 GCCGGGACGC 0.875963 -130 CTGCAGACCTCCGCGTCGACAATTTCACATAGC 75 249 0 TCCGGGACAT 0.739301 -23 GGCCACCGTAACCGTCAGCACGACTCGGCACAAT 76 113 1 ACCGCCACGC 0.533107 -188 CAGCGATTGCACTGTGACGACTTTGCCCAGCTCA 76 231 1 ACTGGGACTT 0.549665 -70 TGGCGGCCGGACCGGGCCGAAGATGGATCC 77 7 0 ACCGGGAAGT 0.915404 -237 CGCTTCGGTGACTGCGTTGTCGCCTGCGCCCGGA 77 201 0 ACTGGGTCGC 0.741966 -43 TGTCGCCGAGTCGGTGGCCACGGCACTT 80 5 0 TCGGGCACGC 0.583273 -81 TATTTCCCCGAGGACGATGGACGCTAGG 83 5 1 TCCCGGACGT 0.599705 -284 ATCAACCCCTACCGCGCTCACGTCGGCGAACGCA 83 205 0 ACCGGCACGC 0.954325 -84 CCAATTCGGGACCGACGCGACGGCCTGAAGGTGG 86 100 0 ACCGCGACGC 0.796409 -195 CAGCACCCCGACTGGGAGGACGTTGAGCTTGAGG 87 11 0 ACTGGGACGT 0.959078 -78 **** * **** * Masking position 2 Map Score: 26.5883 Number of sites scoring better than the average of aligned sites = 7215 Number in coding regions = 6808 Number in noncoding regions = 407 Number of orfs with sites within 600 bp upstream = 347 Fraction of orfs with sites within 600 bp upstream = 0.055734 Motif number 9 TTGGCAGGCTGCGGTTAGTCGAACGAGGAT 9 58 1 GCGGTTAGTC 0.728248 -35 GGTCGGGGCCGCCGTTTTTCCATGTCAAGA 24 96 0 GCCGTTTTTC 0.797663 -165 TGATCGTTGAGCGGATGTTCGCACAGCTCG 28 41 0 GCGGATGTTC 0.859967 -146 TGACGGGTATGTGGTTGTTCTGGCCGAGTC 36 16 0 GTGGTTGTTC 0.771426 -60 GGATTAGAAGGCCCTTGCTCTATCCACCTG 39 149 0 GCCCTTGCTC 0.815683 -152 TACCAACCGGGCGGTTGGTCGGCAGGTAGC 44 78 0 GCGGTTGGTC 0.980657 -58 TCTCTTTGCAGCCGTTGCTCCACGAGGCCG 46 58 1 GCCGTTGCTC 0.972018 -51 CTCGATTTAAGCAGTTGTTCA 47 2 0 GCAGTTGTTC 0.906315 -65 ACGGCGATGGGCCGCTGTTCAATTCGGAAG 49 117 1 GCCGCTGTTC 0.8343 -85 TCACGCCGTAGCGGTTGGTCGAACTGGCTG 50 84 1 GCGGTTGGTC 0.980657 -61 GGTGAATTCTGCGGTAGTTCCCGCTGACGC 51 72 1 GCGGTAGTTC 0.915462 -59 CGCGGTCCTAGCGGTATTTCTTGCTCCGCG 55 131 0 GCGGTATTTC 0.502327 -170 ACCCGCTCACGCGGTTCCTCGAT 60 4 0 GCGGTTCCTC 0.831067 -104 AGCTCGGCGGCCCGTTGCTCCACCCCACAT 64 19 1 CCCGTTGCTC 0.815693 -173 TCGATACAGCGCAGTTGTTCAGCACATCTT 64 72 1 GCAGTTGTTC 0.906315 -120 TATCAACCAAGCGCTTGCTCGGCCAGCTGC 73 271 0 GCGCTTGCTC 0.888883 -30 GCAGTTGTAACCGGTTGTTCGGGTCGACAG 77 49 0 CCGGTTGTTC 0.906899 -195 CCCTTATCCGGCGGTCGTTCACGGCCAATT 86 128 0 GCGGTCGTTC 0.90101 -167 TGCCCCGCCGGCCGGTGGTCGGGCGGGTCG 87 43 1 GCCGGTGGTC 0.76951 -46 ********** Masking position 9 Map Score: 15.2564 Number of sites scoring better than the average of aligned sites = 1249 Number in coding regions = 1179 Number in noncoding regions = 70 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 10 TAATGGAACACGTTCTCGTTTCGCGTTC 12 7 1 AACAGTTCTG 0.972244 -92 CCCGGGTTAGAACAAGTTCTCGTTTGACTGTG 51 27 0 AACAGTTCTG 0.972244 -104 TCACCTGCGAAACATGTTCTTAACCGTTTGGG 64 101 1 AACAGTTCTA 0.715371 -91 TCCCGGTTGTAACACGTTCTAGTCTCTGAATC 67 94 0 AACAGTTCTG 0.972244 -121 CAAGAAATGTAACACGTTCTAGTTTG 69 5 0 AACAGTTCTG 0.972244 -69 ATAGTAATGAAACGTGTTCTAGCCTGGCCCC 70 10 0 AACGGTTCTG 0.857414 -102 TAGCGTACCAAGCAAGTGCTTGCTTAGGTAGC 71 16 1 AGCAGTGCTG 0.970914 -39 CAGCTGGCCGAGCAAGCGCTTGGTTGATAGTC 73 272 1 AGCAGCGCTG 0.851422 -29 CTCCTAACAAAGCAAGTGCTTGGTAGGTTAGC 74 17 1 AGCAGTGCTG 0.970914 -31 CCGAGACGACGACATGTGCTGGAGTTATTGCC 75 153 1 GACAGTGCTG 0.874463 -119 GCACTATTAGAACACGTTCTAGTGGGCAAGAA 75 208 1 AACAGTTCTG 0.972244 -64 GAAAACTAAGAGCATGTGCAGGACCCAGTCGG 83 154 1 AGCAGTGCAG 0.79451 -135 **** ***** * Masking position 9 Map Score: 13.2593 Number of sites scoring better than the average of aligned sites = 75 Number in coding regions = 64 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 11 GGATAGCGCTGGCCAACTCTGGG 3 3 0 GGCCAATCTG 0.776992 -99 CGCAACCATGGCCCAGGTCTGGACGTACGCG 3 46 1 GCCCAGTCTG 0.666414 -56 CACACCCTACGGCCCGCTAGGCTATCGACCA 13 11 0 GGCCCGTAGG 0.489863 -25 CTGATGCTAGGCCGCAATCGGTGTCTTGCGG 14 15 1 GCCGCATCGG 0.948305 -80 GCGGATGGCCGGCGAAATGGGTGAGAACAC 16 10 0 GGCGAATGGG 0.568219 -104 TCGCGAGCGCGGCGAAGCCGGGCGTGGCGGG 18 25 1 GGCGAACCGG 0.850325 -53 GTGTGGGTCTCACCAGATCGGTCTCACTAGA 19 166 1 CACCAGTCGG 0.436057 -29 CTCCCGCTAGGACGCTGTCGGCTCGGTCGCC 22 107 1 GACGCTTCGG 0.352779 -99 CACAATCACAGCCGAATTCCGCGCTGAAGTT 26 111 0 GCCGAATCCG 0.640872 -190 GGTAGGCGGTGCCGAAATCGGCGACTCGCAC 26 241 0 GCCGAATCGG 0.929991 -60 GAGTCGAAGCGGCCCGGTCTGCGCCGTCCAT 27 74 0 GGCCCGTCTG 0.82273 -124 CGATGGCAACGTCCAGGTCGGCGACCGCAAT 29 115 1 GTCCAGTCGG 0.672674 -186 TCTCCGGGTCGGTCAGATCGGCTTTCGGGTG 29 252 1 GGTCAGTCGG 0.403754 -49 TCGCGGATCACCCGAACTCGGTCGGGTTCGC 33 27 0 CCCGAATCGG 0.777189 -25 AGATACCAGGGGCGCCGTCGGACGGAAAGTG 35 80 1 GGCGCCTCGG 0.728684 -159 CCGCGGACTCGGCCAGAACAAC 36 2 1 CGCGGATCGG 0.600608 -74 CGCCACGGCGAATTCGGTGCACGCAAG 44 7 1 GGCGAATCGG 0.957169 -129 CGCCTTGGCGGGCGGATTCGGCCTCGTGGAG 46 75 0 GGCGGATCGG 0.851344 -34 ACGCAAAAGCCCCCATTTCGGGCCCGAAATG 50 36 1 CCCCATTCGG 0.501703 -109 ACGCAAAAGCCCCCATTTCGGGCCCGAAATG 50 49 0 CCCCATTCGG 0.501703 -96 CTAACGACCCGGCGAAGTGGGAACGAAATCC 50 113 0 GGCGAATGGG 0.568219 -32 CTTCAGATGGGGCCCAACCGGTACGGCCCCA 53 11 0 GGCCCACCGG 0.921396 -27 ACTGGGTTTTGGCCCGGTCCGGGCTGGATGT 54 181 1 GGCCCGTCCG 0.856634 -34 CCGGAGTCAGCCCGCGACCGGACGCAGGCGG 55 47 0 CCCGCGCCGG 0.541534 -254 CTGGCGACCTGGCCCAGTCCGAAG 59 4 0 GGCCCATCCG 0.861002 -37 TTCCGCCCAGCTCGGCGGCCCGTTG 64 5 1 GCCCAGTCGG 0.950361 -187 GGAAGCAGAAGGCCCAAACGGTTAAGAACAT 64 114 0 GGCCCAACGG 0.761773 -78 ACCTGATGCCGCCCAAGTCTGTCGCCGCCGC 66 100 0 GCCCAATCTG 0.674374 -137 TCGAGACGCGGCACAGGTCGGCACC 66 222 1 GCACAGTCGG 0.286993 -15 ATCCATCTTCGGCCCGGTCCGGCCGCCAACG 77 13 1 GGCCCGTCCG 0.856634 -231 CGGAGGTTGTCGCCGAGTCGGTGGCCACGGC 80 15 0 CGCCGATCGG 0.692013 -71 TAGCGGTAGCGCCCCGTTCGACGATCGCTGC 82 16 1 GCCCCGTCGA 0.351349 -64 GCATGTGCAGGACCCAGTCGGGTCAAAGCTG 83 165 1 GACCCATCGG 0.808268 -124 GAGCTGCCTGGCCGCTATCGGATGATCCTTG 84 26 1 GCCGCTTCGG 0.779922 -172 GGTCGTTCACGGCCAATTCGGGACCGACGCG 86 115 0 GGCCAATCGG 0.970922 -180 TGCATGTTTGGGCGCATCCTGAATTAGGTCA 86 240 0 GGCGCACCTG 0.450132 -55 GCTCAACGTCCTCCCAGTCGGGGTGCTGCCC 87 17 1 CTCCCATCGG 0.435834 -72 CGCGGGAGCCGGCGAACCCGGCGCCACACAT 88 33 0 GGCGAACCGG 0.850325 -231 TGGCGGTCATGGCCCGAACGGGTTTCACCGC 88 201 0 GGCCCGACGG 0.755174 -63 CGCCACGAGCTGCCAAATCGGGTTTTGCCAG 88 227 1 TGCCAATCGG 0.462236 -37 ****** **** Masking position 11 Map Score: 41.7096 Number of sites scoring better than the average of aligned sites = 10524 Number in coding regions = 9914 Number in noncoding regions = 610 Number of orfs with sites within 600 bp upstream = 477 Fraction of orfs with sites within 600 bp upstream = 0.0766142 Motif number 12 CCTGACTCACCGTCGGCGCCACCGGTTAGC 2 19 0 CGTCGGCGCC 0.985749 -68 GAGACCTAACCGGCGGCCCCGAAGCGTAGT 4 13 1 CGGCGGCCCC 0.962403 -76 TCGTTGATGCTGGCTTCGCCACAGTTCGGT 7 30 1 TGGCTTCGCC 0.68719 -271 GTCAGTTGAACGGTGGCACGAAACGACGGC 7 190 1 CGGTGGCACG 0.284252 -111 GTCCAGTATGCGTCGGCGCAATTTCGCCTC 9 13 1 CGTCGGCGCA 0.928022 -80 CCGGCGGTCATGGCGTCACCCTACCCAAGC 12 40 0 TGGCGTCACC 0.840514 -59 CTGCGCTCGGCATCGTCGCCGGCGGTCATG 12 58 0 CATCGTCGCC 0.772989 -41 CGCAGTGCAGTAGCGTCACCCTCGTCGTTG 14 49 1 TAGCGTCACC 0.370083 -46 GTGTGGGGGTCGGGCGCGCCAATACACGTA 15 30 1 CGGGCGCGCC 0.665371 -112 CCGCCACGCCCGGCTTCGCCGCGCTCGCGA 18 25 0 CGGCTTCGCC 0.952823 -53 CGTCCGTATTCGTGGGCCCCGGCGCATAAA 19 96 0 CGTGGGCCCC 0.739191 -99 CTTCAAGCCCCGCGGCACCTACCGTTGAC 20 10 1 CCGCGGCACC 0.897004 -22 CTGCGGCGCGCATCGTCGCCCGGATAGGCT 23 19 0 CATCGTCGCC 0.772989 -138 GAACGCGGGTCGGCGTCTCCAGTTTCTATT 24 66 1 CGGCGTCTCC 0.833797 -195 CATGGAAAAACGGCGGCCCCGACCCTGCCT 24 102 1 CGGCGGCCCC 0.962403 -159 GACCCTGCCTCAGCGTCGCAGCCGTCGTTG 24 122 1 CAGCGTCGCA 0.630643 -139 GAAGCGGCCCGGTCTGCGCCGTCCATTGGA 27 70 0 GGTCTGCGCC 0.474775 -128 GGTTGGTTGGTAGCGTCGCCGATCCCAAGG 27 148 1 TAGCGTCGCC 0.499094 -50 CCTTAGCCCCCGCGGGCACCGCTGGGCGAG 28 121 1 CGCGGGCACC 0.563077 -66 GTGCCGGGCTCCGCGGCGCAA 29 2 0 CCGCGGCGCA 0.733549 -299 CTTGATCGGTCGTCATCACACAACGGTAAC 29 202 1 CGTCATCACA 0.170258 -99 CGGCGCGCTGCGGTGGCGCCCTTTGCGTAT 32 45 1 CGGTGGCGCC 0.954647 -180 ACTTTCCGTCCGACGGCGCCCCTGGTATCT 35 80 0 CGACGGCGCC 0.831902 -159 CGCGCAAAACCGTCTTCACAGTGTTCTCTT 35 213 1 CGTCTTCACA 0.45209 -26 CGAGTCGTGCCGGGGGCACTGTGGAAATAG 39 193 1 CGGGGGCACT 0.413838 -108 GGGACGGCAACGGTGGCACACTGGGCTACA 49 74 1 CGGTGGCACA 0.698195 -128 GGGGCTTTTGCGTCTGCTCACGCCGTAGCG 50 67 1 CGTCTGCTCA 0.16211 -78 GTCGGCTCCGCGTCGTCACAGTCAAACGAG 51 11 1 CGTCGTCACA 0.770484 -120 TTGTTCAGCACATCTTCACCTGCGAAACAT 64 86 1 CATCTTCACC 0.330428 -106 CACTTATACCTGGGGTCGCAAAACGACGGT 64 161 1 TGGGGTCGCA 0.331774 -31 GTATCGCCCGCGGCGGCACCGCGTC 66 6 0 CGGCGGCACC 0.990968 -231 CCAGCATCTCCGGGTTCACCAATGCAAACC 66 68 0 CGGGTTCACC 0.780186 -169 ATGCTGGCCGCGGCGGCGACAGACTTGGGC 66 91 1 CGGCGGCGAC 0.888887 -146 TCGAGTTCTCTGGCAGCACCCGGTGTCGAT 66 196 0 TGGCAGCACC 0.421801 -41 ACGCGGCACAGGTCGGCACC 66 227 1 GGTCGGCACC 0.684394 -10 CCCACCGCATCGTCGTCGACACGGGGCATT 72 11 0 CGTCGTCGAC 0.567683 -54 TGGCGTCGTTCGTTGGCACCGGTTAGCTTT 76 44 0 CGTTGGCACC 0.821861 -257 ATATCGATGACGGCTGCACCTTAAGGGTGT 77 86 1 CGGCTGCACC 0.964246 -158 TCGGTGACTGCGTTGTCGCCTGCGCCCGGA 77 201 0 CGTTGTCGCC 0.775536 -43 CACCTGCACCTGTCGGCACAGGTA 78 95 1 TGTCGGCACA 0.45263 -14 AAGTGCCGTGGCCACCGACTCGGCGA 80 7 1 CGTGGCCACC 0.484918 -79 CCGCCCTTAACCGCGTCGCCTACCATCGAG 80 62 1 CCGCGTCGCC 0.867059 -24 TCCGTTAGCGGTAGCGCCCCGTTCGACG 82 9 1 CGGTAGCGCC 0.56267 -71 CACCGGGTGTCGGCTCCGCCAACGGGTTAC 83 247 0 CGGCTCCGCC 0.780375 -42 AGGCAGCTCGCATCGGCACCTGGC 84 5 0 CATCGGCACC 0.819717 -193 GCCCGCTACGCGGCTTCGCCCGAGTCGCGA 84 75 0 CGGCTTCGCC 0.952823 -123 TCGCGCGGCGCGGGTGCACCCCTTTCGCGT 84 150 1 CGGGTGCACC 0.889353 -48 AAACATCTAGCGGCGGCGACCACAAGGGTC 85 41 0 CGGCGGCGAC 0.888887 -139 GGTCTGACGCCGGGTGCACACAGCCTTACA 85 144 1 CGGGTGCACA 0.599709 -36 TGTGTGGCGCCGGGTTCGCCGGCTCCCGCG 88 34 1 CGGGTTCGCC 0.857538 -230 ********** Masking position 7 Map Score: 55.1164 Number of sites scoring better than the average of aligned sites = 29908 Number in coding regions = 28531 Number in noncoding regions = 1377 Number of orfs with sites within 600 bp upstream = 755 Fraction of orfs with sites within 600 bp upstream = 0.121266 Motif number 13 CACCGTCGGCGCCACCGGTTAGCCTGGCGAG 2 10 0 GCACCGGTAG 0.661623 -77 GAATTGGCTCCCGAGCGGTTCGGTCAACGACG 14 71 0 CCAGCGGTCG 0.797704 -24 ATTAACGTTGGCTAGCGGATGGCCGGCGAAAT 16 23 0 GCAGCGGAGG 0.873749 -91 TTCCAAGCTAACAACCGGTGGGTCGGTTATTA 16 51 0 ACACCGGTGG 0.701666 -63 GCTCGCCTTCCCATGCTGTTGGACGTTTCGGC 16 91 0 CCTGCTGTGG 0.887804 -23 GGGCCCCCGGCCAACCTGTTGGTTGGGCAAGG 23 54 0 CCACCTGTGG 0.756166 -103 TCAACGAAGACCCTGCGGGAGGACAGCG 24 7 0 CCTGCGGGGG 0.881769 -254 GACGTTATCCGCAACCGGATGGTAGTGGCAAC 26 82 1 GCACCGGAGG 0.599886 -219 ACGCTACCAACCAACCGGTAGGTTAGCACTGC 27 132 0 CCACCGGTGG 0.499486 -66 CGCGAGTCAGACATGCGGTAGGCACCAGGCGG 41 87 1 ACTGCGGTGG 0.822 -29 CCCAACAATACCAACCGGGCGGTTGGTCGGCA 44 84 0 CCACCGGGGG 0.650342 -52 GTTGTCAGTGGCGTGCTGTAGGAACAACAGT 49 181 1 GCTGCTGTGG 0.933899 -21 CTGCTCACGCCGTAGCGGTTGGTCGAACTGGC 50 80 1 CGAGCGGTGG 0.638046 -65 CAGATGGGGCCCAACCGGTACGGCCCCA 53 7 0 CCACCGGTCG 0.520434 -31 ACCGTCGAACGCGTGCTGTCCGGCGGG 54 6 0 GCTGCTGTCG 0.736614 -209 CTGGCCGCCTGCGTCCGGTCGCGGGCTGACTC 55 43 1 GCTCCGGTGC 0.529585 -258 GGGCCAGGTCGCCAGCGGTAGGCTCGATGAT 59 20 1 GCAGCGGTGG 0.930583 -21 TGCGCCTCCTGTCGGGCTGATTCTT 60 93 0 GCTCCTGTGG 0.917547 -15 TGGGCCTTCTGCTTCCGGTGCGGTCCGGCGGA 64 129 1 GCTCCGGTCG 0.877557 -63 GGAACTAGCAGCGACCGGGGGGATGGTCAGGG 67 24 0 GCACCGGGGG 0.90718 -191 GTGTCGACGACGATGCGGTGGGGGTACCACTC 72 19 1 CGTGCGGTGG 0.695532 -46 AGCTGGCCGAGCAAGCGCTTGGTTGATAGTCT 73 273 1 GCAGCGCTGG 0.70135 -28 CAAACGATACGCATGCTGTGTGTAGATTTCCC 75 109 1 GCTGCTGTTG 0.348928 -163 CGGCCTTGCAGCGTGCGGCTGGCATTGTGCCG 76 138 0 GCTGCGGCGG 0.835746 -163 TTACCTAATAGCGTGCTGTGGGTGCCGTTTCA 77 162 0 GCTGCTGTGG 0.933899 -82 CGTGTGGTTAGCTACCTGACGGGCTAGGGGTT 85 103 1 GCACCTGAGG 0.691561 -77 TACCTGACGGGCTAGGGGTTGGCCGGGGCGGT 85 115 1 GCAGGGGTGG 0.750255 -65 ** ****** ** Masking position 6 Map Score: 39.869 Number of sites scoring better than the average of aligned sites = 3035 Number in coding regions = 2766 Number in noncoding regions = 269 Number of orfs with sites within 600 bp upstream = 252 Fraction of orfs with sites within 600 bp upstream = 0.0404754 Motif number 14 TGGACGTACGCGATCACCGCCGCTGTGCGG 3 65 1 CGATCACCGC 0.824063 -37 CGGGTGACTAGGATCGCGGTTATCACCG 6 77 1 GGATCGCGGT 0.508242 -18 AACGACGTGCCGATCGCCGAATCC 7 5 0 CGATCGCCGA 0.557602 -296 GTTTTGCGTCTGCTCGCCGTCGTTTCGTGC 7 205 0 TGCTCGCCGT 0.299621 -96 CTTTTGTCGCCCTCCGTATTGACCCCC 8 40 0 CGCCCTCCGT 0.901476 -17 CCTGCCAAAGCCATCGCTGTACCGAGGCGA 9 36 0 CCATCGCTGT 0.211254 -57 GGCAGGGTCGGGGCCGCCGTTTTTCCATGT 24 101 0 GGGCCGCCGT 0.704956 -160 CAGATTTGTCCCAGCACCGTATCGCCCGT 26 10 0 CCAGCACCGT 0.375559 -291 GGGCTCACCGTCTTCGCTCGG 26 290 0 GGCTCACCGT 0.687732 -11 ACTCAGGAAGCGATCTCCGTCGCGAAACAG 27 101 1 CGATCTCCGT 0.915571 -97 AGTGGTATCACGACCACCTTGGCATGATCC 29 85 0 CGACCACCTT 0.43519 -216 GCGGATCACCCGAACTCGGTCGGGTTCGCT 33 26 0 CGAACTCGGT 0.109066 -26 GCCGGCGAGCCGACCGCCTTTGGCCGAATC 34 12 1 CGACCGCCTT 0.572697 -48 AATTCCTCGACGGCCACCGTTAGATAAACT 39 95 1 CGGCCACCGT 0.843396 -206 CGGGCACCTCCGTGGTTTGAGTT 39 288 0 GCACCTCCGT 0.617824 -13 AATACCATTGCCCCCGCGGTGCGTCTAGGG 40 14 0 CCCCCGCGGT 0.593624 -69 GACGGTCTCCGTACACGACTCA 41 3 1 CGGTCTCCGT 0.75306 -113 ATTGGTATTGCGATCACGGTGCCAGGCCTA 42 26 1 CGATCACGGT 0.699659 -141 GGTGCACGCAAGCTCGCCGTGGCGTTACGC 44 26 1 AGCTCGCCGT 0.299621 -110 GAACAGCGGCCCATCGCCGTGCGACGTAGG 49 107 0 CCATCGCCGT 0.912313 -95 TCGATCACCGTAACAGGACCG 52 36 0 CGATCACCGT 0.933332 -11 CAGTATGTCACCATCGCCGGGATCATCACT 55 13 0 CCATCGCCGG 0.805794 -288 CGCCATCTCCGTCGGCGTTGAC 65 3 1 CCATCTCCGT 0.822486 -39 CGGAGCGTATCGCCCGCGGCGGCACCGCGT 66 12 0 CGCCCGCGGC 0.533555 -225 GCCGCGGCCAGCATCTCCGGGTTCACCAAT 66 75 0 GCATCTCCGG 0.320448 -162 GTGAGTGGTACCCCCACCGCATCGTCGTCG 72 23 0 CCCCCACCGC 0.62805 -42 ATGCGCCCTTCGCTCACCGGGGCATTAGAT 73 201 0 CGCTCACCGG 0.775059 -100 TCACGCCAGCCGATCTCCGTTGCCGGCCAC 76 89 1 CGATCTCCGT 0.915571 -212 TCTCCGTTGCCGGCCACCGTAACCGTCAGC 76 102 1 CGGCCACCGT 0.843396 -199 GCTGCAAGGCCGACCAACGTGTGATGTGTA 76 158 1 CGACCAACGT 0.43519 -143 CACCGCACCAGGCTCGCCGCCCCCATTAGA 78 17 1 GGCTCGCCGC 0.561731 -92 GTTCATCGGTGGACCGCCGCCTAGCGTCCA 83 28 0 GGACCGCCGC 0.739762 -261 TTCGAGGCCGCCATCAACGTACGCGGGGCG 83 73 0 CCATCAACGT 0.193976 -216 GTGTCCACCTCCGTCGTGTAAGGC 85 166 0 CCACCTCCGT 0.863727 -14 TGGCCGTGAACGACCGCCGGATAAGGGTTT 86 131 1 CGACCGCCGG 0.930034 -164 CCGACCCGCCCGACCACCGGCCGGCGGGGC 87 44 0 CGACCACCGG 0.884284 -45 CGCGACCAAACGACCTCCGGCCAACCACAC 88 152 1 CGACCTCCGG 0.855479 -112 ********** Masking position 5 Map Score: 35.8659 Number of sites scoring better than the average of aligned sites = 10277 Number in coding regions = 9614 Number in noncoding regions = 663 Number of orfs with sites within 600 bp upstream = 491 Fraction of orfs with sites within 600 bp upstream = 0.0788628 Motif number 15 GAGAAGGGGGTTTTGCGTCTGCTCGCCGTCG 7 213 0 TTTGCGTCTG 0.965053 -88 GTCGAGGGACTTATGCGTCTGCTAGCGCCGG 7 252 1 TTTGCGTCTG 0.965053 -49 CGGTCCAGTATGCGTCGGCGCAATTTCG 9 8 1 GTTGCGTCGG 0.864164 -85 GAGAAACACTTTATGCGCCGGGGCCCACGAA 19 87 1 TTTGCGCCGG 0.927764 -108 CTTTCGCGCGTGTGGCGTCTGGAAAAATTCC 39 70 1 TGGGCGTCTG 0.947043 -231 AAATGGGGGCTTTTGCGTCTGCTCGGCCAAC 50 23 0 TTTGCGTCTG 0.965053 -122 AAATGGGGGCTTTTGCGTCTGCTCACGCCGT 50 62 1 TTTGCGTCTG 0.965053 -83 GTGCATCACATTATGCGTCAGCGGGAACTAC 51 85 0 TTTGCGTCAG 0.851479 -46 CCGCGCGAGGTGGTGCGTCGGGAGCGCTACT 75 19 1 TGTGCGTCGG 0.977236 -253 ACATGTGCGATGTGGCGTCGTTCGTTGGCAC 76 55 0 TGGGCGTCGT 0.632621 -246 CGCCGCTAGATGTTGTGTCTGTTCGGAG 85 8 0 TGTGTGTCTG 0.696535 -172 CTGGATTATGTGTGGCGCCGGGTTCGCCGGC 88 26 1 TGGGCGCCGG 0.892674 -238 ** ******** Masking position 9 Map Score: 11.9686 Number of sites scoring better than the average of aligned sites = 414 Number in coding regions = 303 Number in noncoding regions = 111 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762