AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00790_mtub_reg_300.orf -o00790_mtub_300.ace -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ponA 300 ponA #2 Rv0052 31 hypothetical protein Rv0052 #3 rpsF 218 rpsF #4 ssb 103 ssb #5 rpsR 41 rpsR #6 rplI 32 rplI #7 Rv0057 28 hypothetical protein Rv0057 #8 Rv0091 300 hypothetical protein Rv0091 #9 ctpA 131 ctpA #10 ctpB 143 ctpB #11 ctpI 300 ctpI #12 ctpH 51 ctpH #13 Rv0426c 200 hypothetical protein Rv0426c #14 def 300 def #15 echA6 26 echA6 #16 Rv0907 73 hypothetical protein Rv0907 #17 uvrD 296 uvrD #18 Rv0967 49 hypothetical protein Rv0967 #19 Rv0968 56 hypothetical protein Rv0968 #20 ctpV 55 ctpV #21 Rv1205 94 hypothetical protein Rv1205 #22 fadD6 49 fadD6 #23 folP2 65 folP2 #24 ctpD 241 ctpD #25 Rv1993c 52 hypothetical protein Rv1993c #26 Rv1994c_Rv1995 156 Rv1994c: hypothetical protein Rv1994c, Rv1995: hypothetical protein Rv1995 #27 Rv1996 95 hypothetical protein Rv1996 #28 ctpF 201 ctpF #29 sucB 263 sucB #30 lipB 52 lipB #31 valS 87 valS #32 Rv2449c 89 hypothetical protein Rv2449c #33 Rv2450c 81 hypothetical protein Rv2450c #34 dfrA 70 dfrA #35 thyA 164 thyA #36 Rv2975c 300 hypothetical protein Rv2975c #37 uvrD2 300 uvrD2 #38 Rv3202c 300 hypothetical protein Rv3202c #39 Rv3267 75 hypothetical protein Rv3267 #40 Rv3268 38 hypothetical protein Rv3268 #41 Rv3269 124 hypothetical protein Rv3269 #42 Rv3295 300 hypothetical protein Rv3295 #43 lhr 43 lhr #44 ftsH 66 ftsH Motif number 1 TCGATGGAGTCCGCGTGCGGAGCCGATCGG 1 13 0 CCGCGTGCGG 0.54553 -288 TCGAGCGCGGCCTTGACCGCCTCGATGGAG 1 34 0 CCTTGACCGC 0.519088 -267 CCGCGCTCGACGGCGCGCCGCCGATGCCCC 1 54 1 CGGCGCGCCG 0.499966 -247 GCGGGTCGCGCGGCGGGGGCATCGGCGGCG 1 69 0 CGGCGGGGGC 0.995474 -232 GCCGTGACCTCCTCGAGCGGGTCGCGCGGC 1 85 0 CCTCGAGCGG 0.672931 -216 GAGGTCACGGCCGCGTTGGCCGCCCCGCCC 1 104 1 CCGCGTTGGC 0.853673 -197 GCGGTTTACCGGGCGGGGCGGCCAACGCGG 1 114 0 GGGCGGGGCG 0.968554 -187 CGGTAAACCGCCGCGGGGGGATCAGCTTGG 1 133 1 CCGCGGGGGG 0.993562 -168 CGGCCCCGGTGGGCGACGTCTGCCACCAAG 1 158 0 GGGCGACGTC 0.670914 -143 CGGGGGGCCCGGGCGGCCCCGGTGGGCGAC 1 171 0 GGGCGGCCCC 0.974295 -130 CCGGACGAACCGGGGGGCCCGGGCGGCCCC 1 181 0 CGGGGGGCCC 0.850004 -120 GGCAGCCGGCCGGCAGGCTGTCCGGACGAA 1 202 0 CGGCAGGCTG 0.787326 -99 GCCTGCCGGCCGGCTGCCCCAACCGAGGGT 1 214 1 CGGCTGCCCC 0.962321 -87 TGGACTTGCCCCGGGTCGGCCAGATCAACT 1 243 1 CCGGGTCGGC 0.578393 -58 GAAATGGATACGGCGTTCGCTGTACCTCAC 1 274 1 CGGCGTTCGC 0.938437 -27 CGCGGTTGGCCCCTACGAGGTG 2 3 1 CGGTTGGCCC 0.707859 -29 CCGCTGCAGCACCTCGTAGG 2 22 0 CCGCTGCAGC 0.552468 -10 GTGTCGCGAACGGCGAGGCCTATCGCGAAC 3 14 0 CGGCGAGGCC 0.976785 -205 GTGCGACGATCCGCGGCGTGTCGTGTGCGC 3 51 0 CCGCGGCGTG 0.97557 -168 AGGCTTAACCCGGTGCGACGATCCGCGGCG 3 63 0 CGGTGCGACG 0.523836 -156 GCCTGGAGTGCGGTGGTGCCTGGTCGGCAT 3 89 1 CGGTGGTGCC 0.8455 -130 GGAGGGTCGCCTGCGTCGGCAACTCGCCCA 3 147 0 CTGCGTCGGC 0.858952 -72 CACGGTCGATCCGTGGCAGGAGGGTCGCCT 3 165 0 CCGTGGCAGG 0.758772 -54 CACGGATCGACCGTGGCCGCACACGACCAC 3 180 1 CCGTGGCCGC 0.966003 -39 CGCCTGGGTTCGGCGGCTGGTCGTGTTCTT 4 68 0 CGGCGGCTGG 0.98123 -36 AATTTCCTCCTGCGTCCGCCTGGGTTCGG 4 85 0 CTGCGTCCGC 0.883771 -19 GTCGGTCCTTCGTCGGTCCGGC 8 3 0 CGTCGGTCCG 0.905704 -298 CGCGACCACGCCGCGGTCGGTAGAGCTCTG 8 63 0 CCGCGGTCGG 0.979339 -238 GCCTGCAGTGCGTCGCGGGCACGCGCTGTG 8 98 0 CGTCGCGGGC 0.91842 -203 GCACTGCAGGCCGTGCTGCGCGCCAGGCGC 8 117 1 CCGTGCTGCG 0.607791 -184 AGAGCGCTGGCCGCGGCGCCTGGCGCGCAG 8 132 0 CCGCGGCGCC 0.99141 -169 TCGCGGCCCTCGGCGCGGGCCTGACCTCAA 8 197 0 CGGCGCGGGC 0.977428 -104 AGCGGCTCTCCCGCGCCGCGCGCGATTGTA 8 236 0 CCGCGCCGCG 0.976237 -65 CGGTCACCGGCGGCTAGCGGCTCTCCCGCG 8 251 0 CGGCTAGCGG 0.528553 -50 CGCTAGCCGCCGGTGACCGGCGATTGGAGA 8 262 1 CGGTGACCGG 0.963001 -39 GGTGCGTTCACCGCGTCAGGCGGCTTCGGT 9 26 1 CCGCGTCAGG 0.820347 -106 CAGGCGGCTTCGGTGAGGTGAGTAATTTGG 9 42 1 CGGTGAGGTG 0.694853 -90 CGCTCAACATCGGCGGCGGCATGACCAAGT 9 78 0 CGGCGGCGGC 0.997046 -54 GGAGGCCACAGGTCGGCCGGAAGTGAGGAG 9 107 1 GGTCGGCCGG 0.914721 -25 TCAGTGGATGCGGTGGGGTCCGTGAATCAG 11 17 0 CGGTGGGGTC 0.837607 -284 CTGATTCGATCCGTGAGCCGTTAGCCAGGC 11 43 1 CCGTGAGCCG 0.814123 -258 CCCAACGACGCGGCAACGCCTGGCTAACGG 11 60 0 CGGCAACGCC 0.791992 -241 GGCGTTGCCGCGTCGTTGGGATCGTTTGGG 11 70 1 CGTCGTTGGG 0.711761 -231 CGTGACGCGCCGGTGGCGGGCACGTGAAAC 11 103 0 CGGTGGCGGG 0.986552 -198 GCTTGAGTACGGGCGGGCCCGTGACGCGCC 11 122 0 GGGCGGGCCC 0.947057 -179 AGATCCGACACGGCGTCTGCATTCATCGCT 11 153 1 CGGCGTCTGC 0.888335 -148 CTGCCTTCACCGGCGACCTCACCCGGCGAA 11 204 1 CGGCGACCTC 0.951986 -97 CTTGCGCATACTTCGCCGGGTGAGGTCGCC 11 215 0 CTTCGCCGGG 0.67335 -86 CGGCGGTAGTCGGCAGTCGCGCCGCACGCG 13 19 1 CGGCAGTCGC 0.781597 -182 CGCGCAACTGCCGCGTGCGGCGCGACTGCC 13 30 0 CCGCGTGCGG 0.54553 -171 GTCTCAGTCAGGGCGGCGTGGCAGGCTTGC 13 62 1 GGGCGGCGTG 0.914865 -139 ACTCGTTAACCCGCACCCTGCATTCGCACC 13 125 0 CCGCACCCTG 0.498263 -76 CGCCAGGAACCGTCGGGCGGTAATCCTGCC 14 64 1 CGTCGGGCGG 0.975777 -237 GTAATCCTGCCCGCGAGTCGGCCGACTTGC 14 83 1 CCGCGAGTCG 0.755376 -218 GCGCCGCGATCGGCAGTCGGGTGCAAGCAA 14 109 0 CGGCAGTCGG 0.84511 -192 CTGCCGATCGCGGCGCGCCGGCTCATGCTC 14 123 1 CGGCGCGCCG 0.499966 -178 AGTGTGAATCCTGCGACGCGACATGCCGGC 14 155 1 CTGCGACGCG 0.893316 -146 AACCACACGACGGCTGGCCGGCATGTCGCG 14 171 0 CGGCTGGCCG 0.856426 -130 GCCCGCCGCCCCGCGGCGCGCCTAAGCCGA 14 217 1 CCGCGGCGCG 0.994338 -84 CGCCGCGAGGCGGCGGGCTGAGGAGGCGGG 14 250 0 CGGCGGGCTG 0.984001 -51 CAGCCCGCCGCCTCGCGGCGCGTATCGTCG 14 260 1 CCTCGCGGCG 0.839957 -41 CGGCGCGTATCGTCGGCGCGCTTAAGCTAG 14 275 1 CGTCGGCGCG 0.979944 -26 TTCCCCGCAGCGCCCGGCTAATGG 16 5 1 CCGCAGCGCC 0.861585 -69 TGGTGCTAGGGGGCGAGCCGAGGCGATCAA 16 32 1 GGGCGAGCCG 0.508044 -42 GCCCCGTGGTCCGCTTCCGGATTCGGGGCT 17 38 0 CCGCTTCCGG 0.778689 -259 ACCACGGGCACCGCTGGCCGGTACCCGTAG 17 85 1 CCGCTGGCCG 0.795277 -212 GTAGAAAAATCGGCGCTGCGCGTTGAGCAC 17 111 1 CGGCGCTGCG 0.958017 -186 CCAAGTTTTTGCGCGGGCGCGTCCGTTGAT 17 155 0 GCGCGGGCGC 0.933459 -142 GCAGGTCCTTCGGCGCCACCACCCAATTTT 17 201 0 CGGCGCCACC 0.839438 -96 GAAGGACCTGCCGCGTGGCGATGAGCCTGG 17 220 1 CCGCGTGGCG 0.950545 -77 CCAGGCTATGCCGCGGTCCGCCGACTCGTC 17 250 1 CCGCGGTCCG 0.971493 -47 AAACTTACCGCCGCGCGGCGACGAGTCGGC 17 269 0 CCGCGCGGCG 0.809355 -28 TTTCGTATGTCGTTGTCCCGAGAAACACCG 19 25 0 CGTTGTCCCG 0.66865 -32 TTCAGCGAGACGTCGGTGTCAGAAAGAACG 20 11 0 CGTCGGTGTC 0.533436 -45 GTCTCCAACGCGTCGGGGCGG 20 45 1 CGTCGGGGCG 0.969644 -11 GCTCGAATGTCGTTGGGCGCAACCGCCATA 21 21 0 CGTTGGGCGC 0.837612 -74 GGTATCGAGACTGCGCCCGGAATCCG 23 7 0 CTGCGCCCGG 0.94437 -59 CGATAAGATACGTCGGTCGCTAGCTCTTCA 24 26 0 CGTCGGTCGC 0.897027 -216 TATCGCGATCCAGCGGCCGCTTCACCCGTT 24 51 1 CAGCGGCCGC 0.791413 -191 TCCGGCGGCCTCACGACAGGGG 24 230 0 CGGCGGCCTC 0.985733 -12 GTTGGCGGCTCTGCGGCCGGAAGCTTGTGA 26 59 1 CTGCGGCCGG 0.980377 -98 CAGATATGATCGGCGCGCGTCACAAGCTTC 26 78 0 CGGCGCGCGT 0.778553 -79 GGGGCTTTCCGCGCGGGTGGGCACCACCCG 28 29 0 GCGCGGGTGG 0.6731 -173 GATTGGGCAACGTCGGGCCGGGCCAGCAGC 28 70 1 CGTCGGGCCG 0.962245 -132 TGATCCACACCGGCGACCGTTAGGCAGGGT 28 139 1 CGGCGACCGT 0.853596 -63 GAGCGTCTGGCTGCGAGGTGAGGTGA 28 186 1 CTGCGAGGTG 0.554025 -16 CAGCAAGTCCCGGTGGGCGGAGGTGCG 29 8 0 CGGTGGGCGG 0.983246 -256 GCTACGGTTTGGGCGACTGGTTGCAACAGC 29 34 0 GGGCGACTGG 0.658158 -230 GTTGCCGACACCTCGGCGGGGACATCGGTG 29 79 0 CCTCGGCGGG 0.96967 -185 TTGGTGGCCCCGGCGGCCGTTGCCGACACC 29 97 0 CGGCGGCCGT 0.952787 -167 CACCAACTCGCCGCGCCCTGGATGTGTGTC 29 121 1 CCGCGCCCTG 0.904354 -143 TATCCTGTCACTGCGCCCGGAGCGACACAC 29 144 0 CTGCGCCCGG 0.94437 -120 CACCTGGGTTCCGCACCCGGTGCGCGACCG 29 186 1 CCGCACCCGG 0.549662 -78 CTCGATCGATCGTCGGTCGGCGCAGGTCCA 29 232 0 CGTCGGTCGG 0.930005 -32 GCCCAGCCGTGCGCTGGCGGCCGAGTAGCC 30 25 1 GCGCTGGCGG 0.647307 -28 ATCCGGGCGGTTTCGGGCGCTTTCATG 31 8 1 CGGTTTCGGG 0.592258 -80 TAGAATTGATCGGTGACCGCCAGCCCTCAC 31 56 1 CGGTGACCGC 0.945526 -32 ATCGGCGGCAGGGTGAGGGCTG 31 76 0 CGGCGGCAGG 0.97859 -12 GACGCTACTCCGGGGTGCGCGAGCAGACGC 32 64 0 CGGGGTGCGC 0.532159 -26 GTTGGCTTTGGCGCGCGCGCACCGCGAAAG 33 54 1 GCGCGCGCGC 0.491154 -28 ACTTCATTGTCGTCGGCGCGCC 34 3 0 CGTCGGCGCG 0.979944 -68 CGTTGTACTCCTGTGGCGCGGATCTGGGTG 35 17 1 CTGTGGCGCG 0.804764 -148 GGTGTATTCCCGTCGACTCGCTGTGCCCGG 35 43 1 CGTCGACTCG 0.58947 -122 TCGCTGTGCCCGGCTTCGCCGCGCTTGCGA 35 60 1 CGGCTTCGCC 0.828504 -105 CAAACCCAGCGGGCGATCGCAAGCGCGGCG 35 76 0 GGGCGATCGC 0.709252 -89 GTTTGTTTGGCGGCGAGTCGCTGCGGCGGC 35 101 1 CGGCGAGTCG 0.863539 -64 CGGCGAGTCGCTGCGGCGGCTTCGCCGCGC 35 111 1 CTGCGGCGGC 0.963284 -54 GTCAGCCTAGCGGCGATCGCAAGCGCGGCG 35 133 0 CGGCGATCGC 0.94954 -32 GGAAAGGCCCCGGCTTCGGCAAGTCGGTGT 36 15 0 CGGCTTCGGC 0.869841 -286 CTCTTAGGTCCGGCGACCTGGCCGGGACGC 36 88 1 CGGCGACCTG 0.96501 -213 GGCGACCTGGCCGGGACGCCTACGTGTAGC 36 99 1 CCGGGACGCC 0.552829 -202 CATTGTTGTGCGGTAGCGCCAAAACGATCA 36 150 1 CGGTAGCGCC 0.652137 -151 TCAGCACCCGCCTTGGCCGGGAGAGCGGCG 36 196 1 CCTTGGCCGG 0.850511 -105 GCCGGGAGAGCGGCGTCGTGACCGTGCTGT 36 211 1 CGGCGTCGTG 0.951443 -90 CCGCGCCAGCCCGCGCCCCGAGCCTAACCA 36 250 0 CCGCGCCCCG 0.534079 -51 CACACCTCCTCCGCGCCAGCCCGCGCCCCG 36 260 0 CCGCGCCAGC 0.813127 -41 CCGCGGAGTTCGTCGGCTCGGTCAATGGCG 37 34 0 CGTCGGCTCG 0.832269 -267 CCGACGAACTCCGCGGCCGCACGGTTGTGT 37 48 1 CCGCGGCCGC 0.994419 -253 ATTCGGTTGGCCGTGAGCGCTGTTTTGAGT 37 102 1 CCGTGAGCGC 0.840522 -199 CCGCCCGGGTCGTCGCCGCGCTAGGTTAGC 37 193 0 CGTCGCCGCG 0.949944 -108 ACGACCCGGGCGGTGTGGCGGCTCGGCAGT 37 210 1 CGGTGTGGCG 0.889513 -91 GCACGCCCCACGGCGTGGCGACACGCCCGG 37 250 1 CGGCGTGGCG 0.972657 -51 GCCTGCTACCGGTCGATTTCTT 38 3 1 CTGCTACCGG 0.552143 -298 TCTTCGTCGTCGGCGACCGGAACGACGAAG 38 29 1 CGGCGACCGG 0.864006 -272 CCTACCTCAGCGGCGGCGCCGGCGACCGAG 38 90 0 CGGCGGCGCC 0.995918 -211 GTGTCCAACCCGGCTTCGTCGTCGAAATCG 38 122 1 CGGCTTCGTC 0.522847 -179 GGTGGAGCAAGGGCGTGCTGTCGATTTCGA 38 143 0 GGGCGTGCTG 0.647596 -158 TCCACCGCATCGGCTTCGGGTATTTCGTCC 38 167 1 CGGCTTCGGG 0.910559 -134 GCTACCATGGCGGCGGTCGTAGGCGGCGGT 38 202 0 CGGCGGTCGT 0.760584 -99 TAGCCAACCCCGGCGTGCCCGAGGCGTGCC 39 23 0 CGGCGTGCCC 0.676922 -53 ACTTGTGTAACGGCGCCCTGTCGGGTAGCC 39 48 0 CGGCGCCCTG 0.940455 -28 GCCCCGCTCAGGGTGGTCGGTGTGG 40 6 0 GGGTGGTCGG 0.647397 -33 GTAATTGCAGCGGCAGCTCGTTGCAGTGAC 41 81 0 CGGCAGCTCG 0.670885 -44 GTCGGATGAGGCGCGGCAGGTCGGCGATGC 42 21 1 GCGCGGCAGG 0.737267 -280 CGCGGCAGGTCGGCGATGCGTTGGAGATTG 42 32 1 CGGCGATGCG 0.944291 -269 AGATTGGAGACGTCGGCCGCGTCACGTTTG 42 56 1 CGTCGGCCGC 0.982221 -245 AAGCTAGGAACGTCGACCGCGTCGTCAAAC 42 81 0 CGTCGACCGC 0.939691 -220 TGCCGCGTATCGGCGACGGCTTTGTCGCGA 42 119 0 CGGCGACGGC 0.989832 -182 GCGACACCACCGGCTCCGCCAGATATCGCG 42 186 0 CGGCTCCGCC 0.890346 -115 GTGGTTCTTTCGGTGGGGTGGGTCTGCCCC 42 228 0 CGGTGGGGTG 0.887237 -73 ACCACACGTTCGGCTAGGCGAGCAGGTGGT 42 259 0 CGGCTAGGCG 0.847308 -42 GCGGTAGGCGGTTTTTGTCGG 43 2 1 CGGTAGGCGG 0.76358 -42 CGATCATCGGCCGTGCCGGCCAGGTCCTTC 44 47 0 CCGTGCCGGC 0.899264 -20 ********** Masking position 1 Map Score: 257.035 Number of sites scoring better than the average of aligned sites = 87612 Number in coding regions = 82208 Number in noncoding regions = 5404 Number of orfs with sites within 600 bp upstream = 1588 Fraction of orfs with sites within 600 bp upstream = 0.255059 Motif number 2 CGATGGAGTCCGCGTGCGGAGCCGATCGGT 1 12 0 CGCGTGCGGA 0.67601 -289 GCGGCGCGCCGTCGAGCGCGGCCTTGACCG 1 45 0 GTCGAGCGCG 0.805844 -256 CGCGCTCGACGGCGCGCCGCCGATGCCCCC 1 55 1 GGCGCGCCGC 0.982648 -246 GAGCGGGTCGCGCGGCGGGGGCATCGGCGG 1 71 0 CGCGGCGGGG 0.968396 -230 CCGTGACCTCCTCGAGCGGGTCGCGCGGCG 1 84 0 CTCGAGCGGG 0.74447 -217 CGGTTTACCGGGCGGGGCGGCCAACGCGGC 1 113 0 GGCGGGGCGG 0.992782 -188 GGTAAACCGCCGCGGGGGGATCAGCTTGGT 1 134 1 CGCGGGGGGA 0.884443 -167 GGGGGGCCCGGGCGGCCCCGGTGGGCGACG 1 170 0 GGCGGCCCCG 0.973777 -131 CCGGCCGGCAGGCTGTCCGGACGAACCGGG 1 197 0 GGCTGTCCGG 0.870972 -104 CCTCGGTTGGGGCAGCCGGCCGGCAGGCTG 1 212 0 GGCAGCCGGC 0.899509 -89 CGCGGTTGGCCCCTACGAGG 2 1 1 CGCGGTTGGC 0.699748 -31 ATGTCAGTGTCGCGAACGGCGAGGCCTATC 3 20 0 CGCGAACGGC 0.674886 -199 GACGATCCGCGGCGTGTCGTGTGCGCAATG 3 47 0 GGCGTGTCGT 0.515826 -172 GCCGCGGATCGTCGCACCGGGTTAAGCCTG 3 64 1 GTCGCACCGG 0.776436 -155 GTGTAGCCTGGGCGAGTTGCCGACGCAGGC 3 139 1 GGCGAGTTGC 0.663261 -80 TGGCAGGAGGGTCGCCTGCGTCGGCAACTC 3 152 0 GTCGCCTGCG 0.623567 -67 ACCTCCTGTGGTCGTGTGCGGCCACGGTCG 3 187 0 GTCGTGTGCG 0.388178 -32 GCCAGTGCCTGGCAGGCCGA 4 1 0 GGCAGGCCGA 0.880703 -103 GCCAGGCACTGGCTGTTCGCTGTCGGTGCG 4 18 1 GGCTGTTCGC 0.513763 -86 GCTGTTCGCTGTCGGTGCGGTTACGTAGGC 4 29 1 GTCGGTGCGG 0.815692 -75 CGGTTACGTAGGCTCGGCGAAGAAGAACAC 4 46 1 GGCTCGGCGA 0.588058 -58 GCCTGGGTTCGGCGGCTGGTCGTGTTCTTC 4 67 0 GGCGGCTGGT 0.837066 -37 GCCGAACCCAGGCGGACGCAGGAGGAAATT 4 84 1 GGCGGACGCA 0.814878 -20 GGCGAGCTGAGGCCACAACA 7 1 1 GGCGAGCTGA 0.734359 -28 TCGGTCCTTCGTCGGTCCGGC 8 2 0 GTCGGTCCGG 0.89705 -299 GTAGAGCTCTGGCTGACCCAGGTTGGCAGT 8 44 0 GGCTGACCCA 0.409743 -257 CTCTACCGACCGCGGCGTGGTCGCGCCAAT 8 68 1 CGCGGCGTGG 0.866133 -233 CCAATCACAGCGCGTGCCCGCGACGCACTG 8 93 1 CGCGTGCCCG 0.857165 -208 CGCGGCGCCTGGCGCGCAGCACGGCCTGCA 8 121 0 GGCGCGCAGC 0.608155 -180 CTGCGCGCCAGGCGCCGCGGCCAGCGCTCT 8 132 1 GGCGCCGCGG 0.980664 -169 CGCGGCCCTCGGCGCGGGCCTGACCTCAAC 8 196 0 GGCGCGGGCC 0.883765 -105 TAGCGAGAAAGTCGCGGCCCTCGGCGCGGG 8 208 0 GTCGCGGCCC 0.673726 -93 TACAATCGCGCGCGGCGCGGGAGAGCCGCT 8 236 1 CGCGGCGCGG 0.975938 -65 GGTCACCGGCGGCTAGCGGCTCTCCCGCGC 8 250 0 GGCTAGCGGC 0.771783 -51 GCCGGTGACCGGCGATTGGAGATTGAGTTG 8 270 1 GGCGATTGGA 0.474905 -31 ACGCGGTGAACGCACCGGCGGATAGTCGTC 9 12 0 CGCACCGGCG 0.431617 -120 CACCGCGTCAGGCGGCTTCGGTGAGGTGAG 9 34 1 GGCGGCTTCG 0.851882 -98 GCTCAACATCGGCGGCGGCATGACCAAGTT 9 77 0 GGCGGCGGCA 0.90823 -55 GAGGCCACAGGTCGGCCGGAAGTGAGGAGC 9 108 1 GTCGGCCGGA 0.852798 -24 ACGACTTGTAGGCTGACGGGTGCAAATACG 10 107 1 GGCTGACGGG 0.829689 -37 GGCCCTCCTCGGATCGGCGTATTTGCA 10 127 0 CTCGGATCGG 0.464476 -17 GGCAACGCCTGGCTAACGGCTCACGGATCG 11 49 0 GGCTAACGGC 0.415691 -252 CCGTTAGCCAGGCGTTGCCGCGTCGTTGGG 11 60 1 GGCGTTGCCG 0.673637 -241 ACGCGCCGGTGGCGGGCACGTGAAACCGAC 11 99 0 GGCGGGCACG 0.778342 -202 CTTGAGTACGGGCGGGCCCGTGACGCGCCG 11 121 0 GGCGGGCCCG 0.98494 -180 GATCCGACACGGCGTCTGCATTCATCGCTC 11 154 1 GGCGTCTGCA 0.456636 -147 CGCCGGTGAAGGCAGTCCGGACCCCTTTGG 11 189 0 GGCAGTCCGG 0.881162 -112 TGCCTTCACCGGCGACCTCACCCGGCGAAG 11 205 1 GGCGACCTCA 0.544859 -96 GCGAAGTATGCGCAAGTCGGTAGACATGGC 11 229 1 CGCAAGTCGG 0.505516 -72 GCGGCGTACGGCGGTAGTCGGC 13 3 1 GGCGTACGGC 0.74792 -198 GTAGTCGGCAGTCGCGCCGCACGCGGCAGT 13 24 1 GTCGCGCCGC 0.892213 -177 CGCCGCACGCGGCAGTTGCGCGTTGTCTCA 13 38 1 GGCAGTTGCG 0.411962 -163 TCTCAGTCAGGGCGGCGTGGCAGGCTTGCA 13 63 1 GGCGGCGTGG 0.95085 -138 GCCAGGAACCGTCGGGCGGTAATCCTGCCC 14 65 1 GTCGGGCGGT 0.731258 -236 TAATCCTGCCCGCGAGTCGGCCGACTTGCT 14 84 1 CGCGAGTCGG 0.891754 -217 CGCCGCGATCGGCAGTCGGGTGCAAGCAAG 14 108 0 GGCAGTCGGG 0.847085 -193 TGCCGATCGCGGCGCGCCGGCTCATGCTCC 14 124 1 GGCGCGCCGG 0.991233 -177 TGGCCGGCATGTCGCGTCGCAGGATTCACA 14 157 0 GTCGCGTCGC 0.721054 -144 ACCACACGACGGCTGGCCGGCATGTCGCGT 14 170 0 GGCTGGCCGG 0.968345 -131 CGCGCCGCGGGGCGGCGGGCATCATCGCCG 14 207 0 GGCGGCGGGC 0.978625 -94 AATCGGCTTAGGCGCGCCGCGGGGCGGCGG 14 219 0 GGCGCGCCGC 0.982648 -82 TGAGGAGGCGGGCAATCGGCTTAGGCGCGC 14 232 0 GGCAATCGGC 0.449847 -69 CGCGCCGCGAGGCGGCGGGCTGAGGAGGCG 14 252 0 GGCGGCGGGC 0.978625 -49 CCCGCCGCCTCGCGGCGCGTATCGTCGGCG 14 263 1 CGCGGCGCGT 0.786786 -38 GGCGCGTATCGTCGGCGCGCTTAAGCTAGC 14 276 1 GTCGGCGCGC 0.898625 -25 AGGCTATATAGGCTGACCCA 15 17 1 GGCTGACCCA 0.409743 -10 CCATTAGCCGGGCGCTGCGGGGAA 16 5 0 GGCGCTGCGG 0.926966 -69 GGTGCTAGGGGGCGAGCCGAGGCGATCAAA 16 33 1 GGCGAGCCGA 0.945443 -41 CGCGGCCGGAACACTCGGTG 16 64 0 CGCGGCCGGA 0.929794 -10 CCACGGGCACCGCTGGCCGGTACCCGTAGA 17 86 1 CGCTGGCCGG 0.91096 -211 TAGAAAAATCGGCGCTGCGCGTTGAGCACG 17 112 1 GGCGCTGCGC 0.864166 -185 CAAGTTTTTGCGCGGGCGCGTCCGTTGATG 17 154 0 CGCGGGCGCG 0.510941 -143 AAGGACCTGCCGCGTGGCGATGAGCCTGGC 17 221 1 CGCGTGGCGA 0.583222 -76 GCGACGAGTCGGCGGACCGCGGCATAGCCT 17 252 0 GGCGGACCGC 0.966142 -45 GACTCGTCGCCGCGCGGCGGTAAGTTTGGA 17 272 1 CGCGCGGCGG 0.950585 -25 GGCTTGCCCCTAATCCCTCA 18 40 0 GGCTTGCCCC 0.510458 -10 TCTCCAACGCGTCGGGGCGG 20 46 1 GTCGGGGCGG 0.952509 -10 CGGATTTTATGGCGGTTGCGCCCAACGACA 21 14 1 GGCGGTTGCG 0.655668 -81 CTGGCACCTCCGCAATGAAGAG 24 3 1 GGCACCTCCG 0.654694 -239 TAACCATTCTGGCGGGGTGCGTTACCCCGA 24 81 0 GGCGGGGTGC 0.916651 -161 ACTGGCACAAGGCAAGCGGGGCCACTAACG 24 114 0 GGCAAGCGGG 0.880485 -128 TCCGGCGGCCTCACGACAGGGGT 24 229 0 GGCGGCCTCA 0.804225 -13 GCCGATAGCTGGCGGGCTCGG 26 2 0 GGCGGGCTCG 0.947681 -155 GTGAGTTGGCGGCTCTGCGGCCGGAAGCTT 26 55 1 GGCTCTGCGG 0.589124 -102 AAGCTTGTGACGCGCGCCGATCATATCTGC 26 79 1 CGCGCGCCGA 0.892711 -78 CGCCTCCTGACGCGATCGCGACAGCTGGCT 27 41 1 CGCGATCGCG 0.450099 -55 TGGCGTCCCCTCTGCATGGGT 27 85 0 GGCGTCCCCT 0.596342 -11 GGGCTTTCCGCGCGGGTGGGCACCACCCGA 28 28 0 CGCGGGTGGG 0.953136 -174 ATTGGGCAACGTCGGGCCGGGCCAGCAGCG 28 71 1 GTCGGGCCGG 0.975301 -131 TACGGTCCAGCGCTGCTGGCCCGGCCCGAC 28 81 0 CGCTGCTGGC 0.516687 -121 TCGGTTGAGCGTCTGGCTGCGAGGTGAGGT 28 180 1 GTCTGGCTGC 0.262918 -22 CGCACCTCCGCCCACCGGGA 29 1 1 CGCACCTCCG 0.387973 -263 CTACGGTTTGGGCGACTGGTTGCAACAGCA 29 33 0 GGCGACTGGT 0.599462 -231 TTGCCGACACCTCGGCGGGGACATCGGTGC 29 78 0 CTCGGCGGGG 0.817501 -186 CCGAGGTGTCGGCAACGGCCGCCGGGGCCA 29 93 1 GGCAACGGCC 0.447108 -171 ACACATCCAGGGCGCGGCGAGTTGGTGGCC 29 118 0 GGCGCGGCGA 0.926667 -146 CTGGATGTGTGTCGCTCCGGGCGCAGTGAC 29 138 1 GTCGCTCCGG 0.784668 -126 ATCACACGGTCGCGCACCGGGTGCGGAACC 29 192 0 CGCGCACCGG 0.888449 -72 TCGATCGATCGTCGGTCGGCGCAGGTCCAC 29 231 0 GTCGGTCGGC 0.767812 -33 CGCACGGCTGGGCAGACGGGGTCAAGC 30 8 0 GGCAGACGGG 0.841745 -45 CCCAGCCGTGCGCTGGCGGCCGAGTAGCCT 30 26 1 CGCTGGCGGC 0.794764 -27 ATCCGGGCGGTTTCGGGCGCTTTCA 31 6 1 GGCGGTTTCG 0.593425 -82 GCAGGGTGAGGGCTGGCGGTCACCGATCAA 31 61 0 GGCTGGCGGT 0.678245 -27 ATCGGCGGCAGGGTGAGGGCTGG 31 75 0 GGCGGCAGGG 0.657125 -13 CGTCTGCTCGCGCACCCCGGAGTAGCGTCA 32 65 1 CGCACCCCGG 0.805586 -25 GGTTGGCTTTGGCGCGCGCGCACCGCGAAA 33 53 1 GGCGCGCGCG 0.525701 -29 GGCGCGCCGACGACAATGAA 34 1 1 GGCGCGCCGA 0.961359 -70 CGACAATGAAGTCGGCTCGGACAGCCTTCA 34 21 1 GTCGGCTCGG 0.915775 -50 GTGTATTCCCGTCGACTCGCTGTGCCCGGC 35 44 1 GTCGACTCGC 0.613538 -121 TCGCAAGCGCGGCGAAGCCGGGCACAGCGA 35 60 0 GGCGAAGCCG 0.805382 -105 AAACCCAGCGGGCGATCGCAAGCGCGGCGA 35 75 0 GGCGATCGCA 0.584068 -90 TTTGTTTGGCGGCGAGTCGCTGCGGCGGCT 35 102 1 GGCGAGTCGC 0.925076 -63 GAGTCGCTGCGGCGGCTTCGCCGCGCTTGC 35 115 1 GGCGGCTTCG 0.851882 -50 TAGCGGCGATCGCAAGCGCGGCGAAGCCGC 35 126 0 CGCAAGCGCG 0.406519 -39 ATCGCCGCTAGGCTGACCGCGTGTCAATC 35 146 1 GGCTGACCGC 0.7633 -19 CCCCGGCTTCGGCAAGTCGGTGTCGCA 36 8 0 GGCAAGTCGG 0.753498 -293 TCTTAGGTCCGGCGACCTGGCCGGGACGCC 36 89 1 GGCGACCTGG 0.917316 -212 GCTACACGTAGGCGTCCCGGCCAGGTCGCC 36 99 0 GGCGTCCCGG 0.970636 -202 CTGACATGTCCGCGAAGGGCTGATCGTTTT 36 170 0 CGCGAAGGGC 0.516855 -131 TCCCGGCCAAGGCGGGTGCTGACATGTCCG 36 188 0 GGCGGGTGCT 0.738238 -113 CCGGGAGAGCGGCGTCGTGACCGTGCTGTC 36 212 1 GGCGTCGTGA 0.370491 -89 AGGCTCGGGGCGCGGGCTGGCGCGGAGGAG 36 255 1 CGCGGGCTGG 0.935241 -46 CGCGGAGTTCGTCGGCTCGGTCAATGGCGG 37 33 0 GTCGGCTCGG 0.915775 -268 CGACGAACTCCGCGGCCGCACGGTTGTGTT 37 49 1 CGCGGCCGCA 0.769912 -252 TGTGTTCGATGTCGACCTCGTCGTAAGCGA 37 73 1 GTCGACCTCG 0.442781 -228 CTCAAAACAGCGCTCACGGCCAACCGAATC 37 101 0 CGCTCACGGC 0.254564 -200 CGCCCGGGTCGTCGCCGCGCTAGGTTAGCG 37 192 0 GTCGCCGCGC 0.787554 -109 CGGGCGGTGTGGCGGCTCGGCAGTTGTTCA 37 216 1 GGCGGCTCGG 0.986762 -85 TTGTTCATGTCGCACGCCCCACGGCGTGGC 37 239 1 CGCACGCCCC 0.527989 -62 TGACAGACCGGGCGTGTCGCCACGCCGTGG 37 257 0 GGCGTGTCGC 0.854427 -44 CTTCGTCGTCGGCGACCGGAACGACGAAGG 38 30 1 GGCGACCGGA 0.920437 -271 GGTCGACGACGTCGGCTTCGCTGGCGTCTC 38 63 1 GTCGGCTTCG 0.460008 -238 CGGCTTCGCTGGCGTCTCGGTCGCCGGCGC 38 75 1 GGCGTCTCGG 0.911698 -226 CTACCTCAGCGGCGGCGCCGGCGACCGAGA 38 89 0 GGCGGCGCCG 0.983457 -212 CGCTGAGGTAGGCGGTGTCCAACCCGGCTT 38 108 1 GGCGGTGTCC 0.543759 -193 GTGGAGCAAGGGCGTGCTGTCGATTTCGAC 38 142 0 GGCGTGCTGT 0.352431 -159 AGCCAACCCCGGCGTGCCCGAGGCGTGCCA 39 22 0 GGCGTGCCCG 0.946746 -54 CGCCGGGGTTGGCTACCCGACAGGGCGCCG 39 38 1 GGCTACCCGA 0.633185 -38 CGCAGGCCGCGTCCAGCAGG 41 1 1 CGCAGGCCGC 0.849224 -124 GCGTCCAGCAGGCGAAGGCATCAGAGCAAT 41 19 1 GGCGAAGGCA 0.407782 -106 TAATTGCAGCGGCAGCTCGTTGCAGTGACA 41 80 0 GGCAGCTCGT 0.45706 -45 GATGAGGCGCGGCAGGTCGGCGATGCGTTG 42 25 1 GGCAGGTCGG 0.912995 -276 GATTGGAGACGTCGGCCGCGTCACGTTTGA 42 57 1 GTCGGCCGCG 0.881484 -244 AGCTAGGAACGTCGACCGCGTCGTCAAACG 42 80 0 GTCGACCGCG 0.779674 -221 ACGGCTTTGTCGCGAATCGGCGAAAGCTAG 42 104 0 CGCGAATCGG 0.634042 -197 GCCGCGTATCGGCGACGGCTTTGTCGCGAA 42 118 0 GGCGACGGCT 0.544521 -183 CGCCAGATATCGCGAATCGGTGAGGAGATA 42 170 0 CGCGAATCGG 0.634042 -131 CGCGATATCTGGCGGAGCCGGTGGTGTCGC 42 186 1 GGCGGAGCCG 0.934234 -115 GGTGGGGTGGGTCTGCCCCGACGTCCCTGC 42 217 0 GTCTGCCCCG 0.658918 -84 CGTTCGGCTAGGCGAGCAGGTGGTGGTGGT 42 253 0 GGCGAGCAGG 0.683238 -48 TCCCGATACACGCAGCTGGAAAGTCCAGGT 44 19 0 CGCAGCTGGA 0.339884 -48 GGACCTGGCCGGCACGGCCGATGATCG 44 50 1 GGCACGGCCG 0.778052 -17 ********** Masking position 3 Map Score: 210.031 Number of sites scoring better than the average of aligned sites = 87153 Number in coding regions = 81126 Number in noncoding regions = 6027 Number of orfs with sites within 600 bp upstream = 1684 Fraction of orfs with sites within 600 bp upstream = 0.270479 Motif number 3 CGGCGGGGGCATCGGCGGCGCGCCGTCGAGC 1 58 0 ATCGGCGGCC 0.820521 -243 TCACGGCCGCGTTGGCCGCCCCGCCCGGTAA 1 108 1 GTTGGCCGCC 0.888449 -193 TGTGCGCAATGTCAGTGTCGCGAACGGCGAG 3 27 0 GTCAGTGTCC 0.306022 -192 AAGCCTGGAGTGCGGTGGTGCCTGGTCGGCA 3 87 1 TGCGGTGGTC 0.45642 -132 CATTTTCGCAGTCGAGGGCTCTCGTGTAGCC 3 116 1 GTCGAGGGCC 0.918434 -103 GCCTGGGCGAGTTGCCGACGCAGGCGACCCT 3 144 1 GTTGCCGACC 0.731035 -75 GTTCGCTGTCGGTGCGGTTACGTAGGCTCGG 4 32 1 GGTGCGGTTC 0.357465 -72 CCTGCAGTGCGTCGCGGGCACGCGCTGTGAT 8 96 0 GTCGCGGGCC 0.978205 -205 TCAGAGCGCTGGCCGCGGCGCCTGGCGCGCA 8 133 0 GGCCGCGGCC 0.92448 -168 CGCGGCCCTCGGCGCGGGCCTGACCTCAACA 8 195 0 GGCGCGGGCT 0.761507 -106 CGCCTGACGCGGTGAACGCACCGGCGGATAG 9 17 0 GGTGAACGCC 0.214588 -115 GCTCAACATCGGCGGCGGCATGACCAAGTTA 9 76 0 GGCGGCGGCT 0.906091 -56 TGACGCGCCGGTGGCGGGCACGTGAAACCGA 11 100 0 GTGGCGGGCC 0.510369 -201 CCACCGGCGCGTCACGGGCCCGCCCGTACTC 11 117 1 GTCACGGGCC 0.74564 -184 TGCCTTCACCGGCGACCTCACCCGGCGAAGT 11 205 1 GGCGACCTCC 0.637445 -96 CGGTAGACATGGCGCTGATACGCCATCAGGA 11 246 1 GGCGCTGATC 0.718806 -55 GGCGGTAGTCGGCAGTCGCGCCGCACGCGGC 13 20 1 GGCAGTCGCC 0.628732 -181 CAGAAATCTCGTCAGCGGTGCGAATGCAGGG 13 109 1 GTCAGCGGTC 0.719216 -92 GGAACCGTCGGGCGGTAATCCTGCCCGCGAG 14 69 1 GGCGGTAATC 0.211178 -232 CCGATCGCGGCGCGCCGGCTCATGCTCCGAG 14 126 1 CGCGCCGGCC 0.866088 -175 GTTCACACCCGGCGATGATGCCCGCCGCCCC 14 198 1 GGCGATGATC 0.390709 -103 GGGCGCGTCCGTTGATGGCACACTCGGTTCG 17 140 0 GTTGATGGCC 0.663641 -157 GCCAAGTTTTTGCGCGGGCGCGTCCGTTGAT 17 155 0 TGCGCGGGCC 0.717006 -142 CCCAAAATTGGGTGGTGGCGCCGAAGGACCT 17 198 1 GGTGGTGGCC 0.943921 -99 GCGGCGACGAGTCGGCGGACCGCGGCATAGC 17 254 0 GTCGGCGGAC 0.809504 -43 AAACACCGGAGTCCGGCGCTCG 19 2 0 GTCCGGCGCC 0.481751 -55 CGGATTTTATGGCGGTTGCGCCCAACGACAT 21 14 1 GGCGGTTGCC 0.594569 -81 CGGATTCCGGGCGCAGTCTCGATACCCGCA 23 10 1 GGCGCAGTCC 0.708635 -56 CCTGGTTACCGTCGAGCGTCCAGTGCGGGTA 23 33 0 GTCGAGCGTC 0.494592 -33 AGATACGTCGGTCGCTAGCTCTTCATTGCGG 24 20 0 GTCGCTAGCC 0.767485 -222 TGGTTAATCCGTTAGTGGCCCCGCTTGCCTT 24 105 1 GTTAGTGGCC 0.396383 -137 GATTGAATTGGTCACTGGCACAAGGCAAGCG 24 126 0 GTCACTGGCC 0.724634 -116 TCCGGCGGCCTCACGACAGGGGTG 24 228 0 GGCGGCCTCC 0.899563 -14 GATATCGTGAGTTGGCGGCTCTGCGGCCGGA 26 49 1 GTTGGCGGCC 0.96362 -108 CGCGTCAGGAGGCGATGGTCCCTAACCCAAG 27 24 0 GGCGATGGTC 0.830229 -72 TTAGCCAGCTGTCGCGATCGCGTCAGGAGGC 27 42 0 GTCGCGATCC 0.325406 -54 GCTGGCTAACGTCGGTAGTACACCCATGCAG 27 64 1 GTCGGTAGTC 0.54937 -32 CTGCTCGGGTGGTGCCCACCCGCGCGGAAAG 28 24 1 GGTGCCCACC 0.577827 -178 ACGGTCCAGCGCTGCTGGCCCGGCCCGACGT 28 79 0 GCTGCTGGCC 0.314338 -123 CTGCCTAACGGTCGCCGGTGTGGATCAGGGC 28 135 0 GTCGCCGGTT 0.565798 -67 AGTCCCGGTGGGCGGAGGTGCG 29 2 0 GGCGGAGGTC 0.872618 -262 CATCGGTGCAGTCGGCCGTCCTTGCTACGGT 29 56 0 GTCGGCCGTC 0.921803 -208 CCCGGCGGCCGTTGCCGACACCTCGGCGGGG 29 88 0 GTTGCCGACC 0.731035 -176 GGCGCGGCGAGTTGGTGGCCCCGGCGGCCGT 29 107 0 GTTGGTGGCC 0.909508 -157 ATCGTCGGTCGGCGCAGGTCCACCTCTGGCC 29 223 0 GGCGCAGGTC 0.842786 -41 GGTTGGCTTTGGCGCGCGCGCACCGCGAAAG 33 53 1 GGCGCGCGCC 0.957634 -29 CGACTTCATTGTCGTCGGCGCGCC 34 4 0 GTCGTCGGCC 0.771855 -67 GCTTCGGCAAGTCGGTGTCGCA 36 2 0 GTCGGTGTCC 0.87095 -299 TCCCGGCCAGGTCGCCGGACCTAAGAGATTT 36 84 0 GTCGCCGGAC 0.7688 -217 CCGGCGACCTGGCCGGGACGCCTACGTGTAG 36 97 1 GGCCGGGACC 0.404357 -204 AACCAGACGTGGTGACAGCACGGTCACGACG 36 224 0 GGTGACAGCC 0.416445 -77 TTAGGCTCGGGGCGCGGGCTGGCGCGGAGGA 36 253 1 GGCGCGGGCG 0.725811 -48 CGACGAACTCCGCGGCCGCACGGTTGTGTTC 37 49 1 CGCGGCCGCC 0.713075 -252 AACCTAGCGCGGCGACGACCCGGGCGGTGTG 37 196 1 GGCGACGACC 0.853952 -105 ACCCGGGCGGTGTGGCGGCTCGGCAGTTGTT 37 213 1 TGTGGCGGCC 0.599214 -88 AGTTGTTCATGTCGCACGCCCCACGGCGTGG 37 237 1 GTCGCACGCC 0.769071 -64 TGGCGTCTCGGTCGCCGGCGCCGCCGCTGAG 38 84 1 GTCGCCGGCC 0.990667 -217 GGCGGTCGTAGGCGGCGGTCCACAGGACGAA 38 190 0 GGCGGCGGTC 0.984997 -111 TGGCTACCATGGCGGCGGTCGTAGGCGGCGG 38 203 0 GGCGGCGGTG 0.698059 -98 TACCCGACAGGGCGCCGTTACACAAGTAGTC 39 51 1 GGCGCCGTTC 0.870746 -25 CTGTAATTGCAGCGGCAGCTCGTTGCAGTGA 41 82 0 AGCGGCAGCC 0.385543 -43 GGCGCGGCAGGTCGGCGATGCGTTGGAGATT 42 30 1 GTCGGCGATC 0.837148 -271 GATTGGAGACGTCGGCCGCGTCACGTTTGAC 42 57 1 GTCGGCCGCT 0.634029 -244 TGACGACGCGGTCGACGTTCCTAGCTTTCGC 42 84 1 GTCGACGTTC 0.502267 -217 CGACAAAGCCGTCGCCGATACGCGGCACTAT 42 122 1 GTCGCCGATC 0.800903 -179 TGGCGGAGCCGGTGGTGTCGCAGCAGGGACG 42 195 1 GGTGGTGTCC 0.688194 -106 GCGAGCAGGTGGTGGTGGTTCTTTCGGTGGG 42 241 0 GGTGGTGGTC 0.829492 -60 CGATCATCGGCCGTGCCGGCCAGGTC 44 51 0 ATCGGCCGTC 0.284345 -16 ********* * Masking position 11 Map Score: 79.2601 Number of sites scoring better than the average of aligned sites = 38614 Number in coding regions = 36361 Number in noncoding regions = 2253 Number of orfs with sites within 600 bp upstream = 1123 Fraction of orfs with sites within 600 bp upstream = 0.180373 Motif number 4 GACCGATCGGCTCCGCACGCGGACTC 1 5 1 GATCGCTCCC 0.530675 -296 CGAGCGCGGCCTTGACCGCCTCGATGGAGTCC 1 31 0 CTTGACGCCC 0.815324 -270 TCAAGGCCGCGCTCGACGGCGCGCCGCCGATG 1 48 1 GCTCGCGGCC 0.684671 -253 GCGCGCCGCCGATGCCCCCGCCGCGCGACCCG 1 66 1 GATGCCCCGC 0.878323 -235 TCACGGCCGCGTTGGCCGCCCCGCCCGGTAAA 1 108 1 GTTGGCGCCC 0.89241 -193 CTGCCACCAAGCTGATCCCCCCGCGGCGGTTT 1 137 0 GCTGACCCCC 0.957452 -164 ACCGGGGCCGCCCGGGCCCCCCGGTTCGTCCG 1 178 1 CCCGGCCCCC 0.78295 -123 GTTCGCTGTACCTCACCGCGGCG 1 288 1 CCTCACGCGC 0.976526 -13 CGCGGTTGGCCCCTACGAGGTGCTGC 2 5 1 GTTGGCCCTC 0.383958 -27 ACACGCCGCGGATCGTCGCACCGGGTTAAGCC 3 60 1 GATCGCGCAC 0.590845 -159 AGGAACCTCATCACCTCCTGTGGTCGT 3 202 0 CCTCACACCC 0.643971 -17 AATTTCCTCCTGCGTCCGCCTGGGTTCGGC 4 84 0 CCTGCTCCGC 0.273233 -20 ACTGTTGTGGCCTCAGCTCGCC 7 1 0 CCTCACTCGC 0.816333 -28 CCGACCGCGGCGTGGTCGCGCCAATCACAGCG 8 73 1 CGTGGCGCGC 0.897162 -228 AATCACAGCGCGTGCCCGCGACGCACTGCAGG 8 95 1 CGTGCCGCGC 0.897143 -206 TGCAGGCCGTGCTGCGCGCCAGGCGCCGCGGC 8 121 1 GCTGCCGCCG 0.79811 -180 AAGTCAGAGCGCTGGCCGCGGCGCCTGGCGCG 8 135 0 GCTGGCGCGC 0.984352 -166 CCTCAACAACGCTCCACGCCTCTGCGCATAAG 8 171 0 GCTCCCGCCC 0.983753 -130 TCGGCGCGGGCCTGACCTCAACAACGCTCCAC 8 186 0 CCTGACTCAC 0.303592 -115 AAGTCGCGGCCCTCGGCGCGGGCCTGACCTCA 8 198 0 CCTCGCGCGG 0.840589 -103 CCGCCGGTGCGTTCACCGCGTCAGGCGGCTTC 9 21 1 GTTCACGCGC 0.889654 -111 CGACCTGTGGCCTCCGCTCAACATCGGCGGCG 9 90 0 CCTCCCTCAC 0.39498 -42 CGTGGCTCCTCACTTCCGGCCGACCT 9 116 0 GCTCCCACTC 0.314004 -16 GTCGGTTTCACGTGCCCGCCACCGGCGCGTCA 11 99 1 CGTGCCGCCC 0.871254 -202 CTCAAGAGTTGCTCAACGCCGCCAGA 12 5 0 GCTCACGCCC 0.977222 -47 CGGCAGTCGCGCCGCACGCGGCAGTTGCGCGT 13 29 1 GCCGCCGCGC 0.815294 -172 GGGCGGTAATCCTGCCCGCGAGTCGGCCGACT 14 78 1 CCTGCCGCGG 0.833689 -223 GGCCGACTTGCTTGCACCCGACTGCCGATCGC 14 102 1 CTTGCCCCGC 0.817599 -199 GCACCCGACTGCCGATCGCGGCGCGCCGGCTC 14 115 1 GCCGACGCGC 0.899489 -186 ACCCGGCGATGATGCCCGCCGCCCCGCGGCGC 14 204 1 GATGCCGCCC 0.908508 -97 GCCCGCCGCCCCGCGGCGCGCCTAAGCCGATT 14 217 1 CCGCGCGCGC 0.786324 -84 TTGCCCGCCTCCTCAGCCCGCCGCCTCGCGGC 14 247 1 CCTCACCCGC 0.958623 -54 GCGCGCCGACGATACGCGCCGCGAGGCGGCGG 14 264 0 GATACCGCCC 0.204889 -37 TTCCCCGCAGCGCCCGGCTAATGGTGCT 16 7 1 GCAGCCCCGC 0.35896 -67 GGTTTGATCGCCTCGGCTCGCCCCCTAGCACC 16 33 0 CCTCGCTCGC 0.862453 -41 CTCGGTTCGTGCTCAACGCGCAGCGCCGATTT 17 117 0 GCTCACGCGA 0.662653 -180 GCGGCAGGTCCTTCGGCGCCACCACCCAATTT 17 202 0 CTTCGCGCCC 0.868985 -95 GCCTGGCCAGGCTCATCGCCACGCGGCAGGTC 17 224 0 GCTCACGCCC 0.977244 -73 CGACGAGTCGGCGGACCGCGGCATAGCCTGGC 17 249 0 GCGGACGCGC 0.765088 -48 CGGTCCGCCGACTCGTCGCCGCGCGGCGGTAA 17 263 1 ACTCGCGCCC 0.703648 -34 TTTTATGGCGGTTGCGCCCAACGACATTCGAG 21 18 1 GTTGCCCCAC 0.298635 -77 TTGGGTTAGGGACCATCGCCTCCTGACGCGAT 27 25 1 GACCACGCCC 0.576706 -71 AGCGCTGCTGGCCCGGCCCGACGTTGCCCAAT 28 71 0 GCCCGCCCGC 0.855314 -131 GACTTACGGCCCTGATCCACACCGGCGACCGT 28 127 1 CCTGACCACC 0.181647 -75 CCGACGGTTGGCTCAACCCTGCCTAACGGTCG 28 152 0 GCTCACCCTC 0.763223 -50 TCACCTCACCTCGCAGCCAGACGCT 28 187 0 CCTCACTCGA 0.136227 -15 CGCACCTCCGCCCACCGGGACTTGCT 29 5 1 CCTCCCCCAC 0.770867 -259 CGACTGCACCGATGTCCCCGCCGAGGTGTCGG 29 73 1 GATGTCCCGC 0.337244 -191 GCGGCGAGTTGGTGGCCCCGGCGGCCGTTGCC 29 103 0 GGTGGCCCGC 0.864353 -161 GGGGCCACCAACTCGCCGCGCCCTGGATGTGT 29 116 1 ACTCGCGCGC 0.753782 -148 GCTTGACCCCGTCTGCCCAGCCG 30 2 1 CTTGACCCGC 0.760519 -51 GACCGCCAGCCCTCACCCTGCCGCCGAT 31 70 1 CCTCACCTGC 0.233453 -18 ACTTCATTGTCGTCGGCGCGCC 34 1 0 CGTCGCGCGC 0.902429 -70 AATACACCCAGATCCGCGCCACAGGAGTACAA 35 19 0 GATCCCGCCC 0.912478 -146 CCGTCGACTCGCTGTGCCCGGCTTCGCCGCGC 35 52 1 GCTGTCCCGC 0.693595 -113 TCGCCGCTAGGCTGACCGCGTGTCAATC 35 147 1 GCTGACGCGG 0.825201 -18 GCGCCAAAACGATCAGCCCTTCGCGGACATGT 36 165 1 GATCACCCTC 0.363084 -136 CAACACACCTCCTCCGCGCCAGCCCGCGCCCC 36 261 0 CCTCCCGCCG 0.805236 -40 AGCGTGTCATGATCACCGCTGCGCTCACCATC 37 164 0 GATCACGCTC 0.505444 -137 ACACCGCCCGGGTCGTCGCCGCGCTAGGTTAG 37 194 0 GGTCGCGCCC 0.905511 -107 ACGAAGCCGGGTTGGACACCGCCTACCTCAGC 38 109 0 GTTGGCACCC 0.317572 -192 CACCGACCACCCTGAGCGGGGCGATCCTGGAT 40 14 1 CCTGACGGGC 0.575231 -25 GCCTTCGCCTGCTGGACGCGGCCTGCG 41 6 0 GCTGGCGCGC 0.977289 -119 CGTCGGGGCAGACCCACCCCACCGAAAGAACC 42 224 1 GACCCCCCCC 0.517721 -77 ACCACCACCACCTGCTCGCCTAGCCGAACGTG 42 253 1 CCTGCCGCCA 0.603184 -48 ***** **** * Masking position 7 Map Score: 77.0372 Number of sites scoring better than the average of aligned sites = 22774 Number in coding regions = 21151 Number in noncoding regions = 1623 Number of orfs with sites within 600 bp upstream = 915 Fraction of orfs with sites within 600 bp upstream = 0.146964 Motif number 5 TACCGGGCGGGGCGGCCAACGCGGCCGTGA 1 108 0 GGCGGCCAAC 0.811175 -193 CGGACAGCCTGCCGGCCGGCTGCCCCAACC 1 208 1 GCCGGCCGGC 0.481873 -93 TGCCGACGCAGGCGACCCTCCTGCCACGGA 3 156 1 GGCGACCCTC 0.762238 -63 CCTGCCACGGATCGACCGTGGCCGCACACG 3 175 1 ATCGACCGTG 0.519354 -44 TCAGCGCCATGTCTACCGACTTGCGCATAC 11 234 0 GTCTACCGAC 0.464491 -67 TACGGCGGTAGTCGGCAGTCGCGCCGCACG 13 17 1 GTCGGCAGTC 0.665484 -184 CTGCCCGCGAGTCGGCCGACTTGCTTGCAC 14 89 1 GTCGGCCGAC 0.499909 -212 GCCGCGGGGCGGCGGGCATCATCGCCGGGT 14 204 0 GGCGGGCATC 0.823505 -97 GGGCTGAGGAGGCGGGCAATCGGCTTAGGC 14 236 0 GGCGGGCAAT 0.308898 -65 CGCGCCGCGAGGCGGCGGGCTGAGGAGGCG 14 252 0 GGCGGCGGGC 0.82161 -49 GCGGCGACGAGTCGGCGGACCGCGGCATAG 17 255 0 GTCGGCGGAC 0.554165 -42 CGAATTGGTTGTCGACCAACC 22 2 0 GTCGACCAAC 0.850028 -48 CCTGGTTACCGTCGAGCGTCCAGTGCGGGT 23 34 0 GTCGAGCGTC 0.863235 -32 ATGAAGAGCTAGCGACCGACGTATCTTATC 24 25 1 AGCGACCGAC 0.825154 -217 AGATATGATCGGCGCGCGTCACAAGCTTCC 26 77 0 GGCGCGCGTC 0.766754 -80 GATCCACACCGGCGACCGTTAGGCAGGGTT 28 140 1 GGCGACCGTT 0.866534 -62 CATCGGTGCAGTCGGCCGTCCTTGCTACGG 29 57 0 GTCGGCCGTC 0.613712 -207 TGGTGGCCCCGGCGGCCGTTGCCGACACCT 29 96 0 GGCGGCCGTT 0.918878 -168 CGGCCGCCGGGGCCACCAACTCGCCGCGCC 29 108 1 GGCCACCAAC 0.315201 -156 GCACCCGGTGCGCGACCGTGTGATAGGCCA 29 198 1 CGCGACCGTG 0.695696 -66 GTGGACCTGCGCCGACCGACGATCGATCGA 29 231 1 GCCGACCGAC 0.813554 -33 GCCGTGCGCTGGCGGCCGAGTAGCCTAGCT 30 30 1 GGCGGCCGAG 0.695297 -23 TCCCGGCCAGGTCGCCGGACCTAAGAGATT 36 85 0 GTCGCCGGAC 0.531247 -216 AAGCGATTCGGTTGGCCGTGAGCGCTGTTT 37 97 1 GTTGGCCGTG 0.432124 -204 CACGCCGTGGGGCGTGCGACATGAACAACT 37 237 0 GGCGTGCGAC 0.547229 -64 AGCCGACGTCGTCGACCAAGCCTTCGTCGT 38 50 0 GTCGACCAAG 0.726899 -251 CGGCGGCGCCGGCGACCGAGACGCCAGCGA 38 80 0 GGCGACCGAG 0.9625 -221 GGCGGTCGTAGGCGGCGGTCCACAGGACGA 38 191 0 GGCGGCGGTC 0.963949 -110 TGGCTACCATGGCGGCGGTCGTAGGCGGCG 38 204 0 GGCGGCGGTC 0.963949 -97 GGCGCGGCAGGTCGGCGATGCGTTGGAGAT 42 30 1 GTCGGCGATG 0.570791 -271 TCAAACGTGACGCGGCCGACGTCTCCAATC 42 57 0 CGCGGCCGAC 0.525227 -244 AGCTAGGAACGTCGACCGCGTCGTCAAACG 42 80 0 GTCGACCGCG 0.614407 -221 CGATCATCGGCCGTGCCGGCCAGGT 44 52 0 ATCGGCCGTG 0.686927 -15 ********** Masking position 3 Map Score: 42.2439 Number of sites scoring better than the average of aligned sites = 14089 Number in coding regions = 13206 Number in noncoding regions = 883 Number of orfs with sites within 600 bp upstream = 549 Fraction of orfs with sites within 600 bp upstream = 0.0881786 Motif number 6 TCGCGCGGCGGGGGCATCGGCGGCGCGCCG 1 64 0 GGGGCATCGG 0.562791 -237 GACGAACCGGGGGGCCCGGGCGGCCCCGGT 1 178 0 GGGGCCCGGG 0.870114 -123 GTTGATCTGGCCGACCCGGGGCAAGTCCAC 1 242 0 CCGACCCGGG 0.753574 -59 CGAACCCAGGCGGACGCAGGAGGAAATT 4 86 1 CGGACGCAGG 0.527989 -18 GAGAAAGTCGCGGCCCTCGGCGCGGGCCTG 8 204 0 CGGCCCTCGG 0.842982 -97 CTCCAATCGCCGGTCACCGGCGGCTAGCGG 8 261 0 CGGTCACCGG 0.870975 -40 TACCGCCCGACGGTTCCTGGCGTGGTTCAA 14 56 0 CGGTTCCTGG 0.539857 -245 GGTCCGCTTCCGGATTCGGGGCTCGTCTCT 17 31 0 CGGATTCGGG 0.958436 -266 AATCCGGAAGCGGACCACGGGGCTCTGCGA 17 45 1 CGGACCACGG 0.871993 -252 GATTTTTCTACGGGTACCGGCCAGCGGTGC 17 92 0 CGGGTACCGG 0.900152 -205 GACGAGTCGGCGGACCGCGGCATAGCCTGG 17 250 0 CGGACCGCGG 0.851315 -47 GAACGGGTGAGGGATTAGGGGCAAGCC 18 33 1 GGGATTAGGG 0.371639 -17 CGAGCGCCGGACTCCGGTGTTTCTCGG 19 8 1 CGGACTCCGG 0.974246 -49 CGGATTCCGGGCGCAGTCTC 23 1 1 CGGATTCCGG 0.961983 -65 CTATCGGCTCGGGATATCGGTTAACGATAT 26 24 1 GGGATATCGG 0.672684 -133 CACCTCGGCGGGGACATCGGTGCAGTCGGC 29 71 0 GGGACATCGG 0.754367 -193 ATCCGGGCGGTTTCGGGCGCTTTCATG 31 8 1 CGGTTTCGGG 0.823939 -80 CAAATCCGACCGGATTTGGGAGCTTTTGCG 32 25 0 CGGATTTGGG 0.892203 -65 CAAATCCGGTCGGATTTGGGAGCTTTTGCG 32 37 1 CGGATTTGGG 0.892203 -53 CGTCTGCTCGCGCACCCCGGAGTAGCGTCA 32 65 1 CGCACCCCGG 0.770573 -25 AGCCAACCCACGGGCATGGGTTAGCTGCCA 33 31 0 CGGGCATGGG 0.820063 -51 TCCTGTGGCGCGGATCTGGGTGTATTCCCG 35 25 1 CGGATCTGGG 0.93724 -140 TCCACCGCATCGGCTTCGGGTATTTCGTCC 38 167 1 CGGCTTCGGG 0.834763 -134 CTGACAAGCTCGGATACTGGAGCTGGCAAG 38 259 0 CGGATACTGG 0.738104 -42 CGGATCCAGGATCGCCCCGC 40 29 0 CGGATCCAGG 0.852532 -10 ********** Masking position 9 Map Score: 28.968 Number of sites scoring better than the average of aligned sites = 5043 Number in coding regions = 4632 Number in noncoding regions = 411 Number of orfs with sites within 600 bp upstream = 335 Fraction of orfs with sites within 600 bp upstream = 0.0538066 Motif number 7 GACCGATCGGCTCCGCACGCGGACTCCATCGA 1 10 1 GCTCCCGCGG 0.660466 -291 GGGGGCATCGGCGGCGCGCCGTCGAGCGCGGCC 1 52 0 GCGCCCCGTC 0.91578 -249 CGAGCGGGTCGCGCGGCGGGGGCATCGGCGGCG 1 69 0 GCGGCGGGGC 0.717561 -232 TCGCCCACCGGGGCCGCCCGGGCCCCCCGGTTC 1 172 1 GGGCCCGGGC 0.959908 -129 CTCGGTTGGGGCAGCCGGCCGGCAGGCTGTCCG 1 208 0 GCACGCCGGC 0.856826 -93 ACTCGCCCAGGCTACACGAGAGCCCTCGACTGC 3 123 0 GCTCCAGAGC 0.247598 -96 GCCGACGCAGGCGACCCTCCTGCCACGGATCGA 3 157 1 GCGCCCCTGC 0.849241 -62 ATTGGCGCGACCACGCCGCGGTCGGTAGAGCTC 8 65 0 CCAGCCGGTC 0.530695 -236 ACGGCCTGCAGTGCGTCGCGGGCACGCGCTGTG 8 98 0 GTGGCCGGGC 0.78454 -203 GCTGGCCGCGGCGCCTGGCGCGCAGCACGGCCT 8 124 0 GCGCGCGCGC 0.524195 -177 AAGTCGCGGCCCTCGGCGCGGGCCTGACCTCAA 8 197 0 CCTGCCGGGC 0.949471 -104 CGACTTTCTCGCTACAATCGCGCGCGGCGCGGG 8 224 1 GCTCACGCGC 0.607065 -77 CCGGCGGCTAGCGGCTCTCCCGCGCCGCGCGCG 8 242 0 GCGCCCCCGC 0.861574 -59 ATCTCCAATCGCCGGTCACCGGCGGCTAGCGGC 8 260 0 GCCGCCCGGC 0.639925 -41 CATCGCCAGTGCATCCAGCGGGCCATAGGGAAC 10 58 1 GCACACGGGC 0.8522 -86 CCCGCCACCGGCGCGTCACGGGCCCGCCCGTAC 11 113 1 GCGGCCGGGC 0.838473 -188 GCGGCGTTGAGCAACTCTTGAGCATTGCTGCAT 12 15 1 GCACCTGAGC 0.498682 -37 ATTGCTGCATCCATCGCACGGGCT 12 38 1 CCACCCGGGC 0.972793 -14 GTCGGCAGTCGCGCCGCACGCGGCAGTTGCGCG 13 27 1 GCGCCCGCGG 0.791559 -174 AGCAAGTCGGCCGACTCGCGGGCAGGATTACCG 14 81 0 CCGCCCGGGC 0.98999 -220 ACTGCCGATCGCGGCGCGCCGGCTCATGCTCCG 14 122 1 GCGCCCCGGC 0.985428 -179 ATCCTGCGACGCGACATGCCGGCCAGCCGTCGT 14 162 1 GCGCTCCGGC 0.82015 -139 ATCGGCTTAGGCGCGCCGCGGGGCGGCGGGCAT 14 215 0 GCGGCCGGGG 0.867407 -86 CCGCCGCGCGGCGACGAGTCGGCGGACCGCGGC 17 259 0 GCGCATCGGC 0.456922 -38 TCGTGAGTTGGCGGCTCTGCGGCCGGAAGCTTG 26 53 1 GCGCCGCGGC 0.910627 -104 GCGGCCGGAAGCTTGTGACGCGCGCCGATCATA 26 71 1 GCTGGCGCGC 0.52257 -86 GCGCGGGTGGGCACCACCCGAGCAGATCGCACA 28 16 0 GCACCCGAGC 0.922707 -186 TTACGGCCCTGATCCACACCGGCGACCGTTAGG 28 130 1 GATCCCCGGC 0.754464 -72 GCGGCCGTTGCCGACACCTCGGCGGGGACATCG 29 82 0 CCGCCTCGGC 0.839162 -182 GCTTGACCCCGTCTGCCCAGCCG 30 1 1 GCTGCCCGTC 0.718848 -52 TCTAGGAACCGCTTCACACCGGCATGAAAGCGC 31 27 0 GCTCCCCGGC 0.987726 -61 CGCGCCAAAGCCAACCCACGGGCATGGGTTAGC 33 36 0 CCACCCGGGC 0.972793 -46 TTCCTTTCGCGGTGCGCGCGCGCCAAAGCCAAC 33 54 0 GGTCCCGCGC 0.699409 -28 AGCCGCCGCAGCGACTCGCCGCCAAACAAACCC 35 99 0 GCGCCCCGCC 0.921814 -66 ATATCTGCGGGAAAGGCCCCGGCTTCGGCAAGT 36 21 0 GAAGCCCGGC 0.627373 -280 GCTATCCTGTGCTAGCCGCGGGCTACACGTAGG 36 117 0 GCTGCCGGGC 0.98431 -184 CCGCGCCAGCCCGCGCCCCGAGCCTAACCAGAC 36 247 0 CCGGCCGAGC 0.804647 -54 CAACACACCTCCTCCGCGCCAGCCCGCGCCCCG 36 260 0 CCTCCCCAGC 0.785365 -41 CCTAGCGCGGCGACGACCCGGGCGGTGTGGCGG 37 198 1 CGAGCCGGGC 0.646096 -103 GCGCCGGCGACCGAGACGCCAGCGAAGCCGACG 38 72 0 CCGGCCCAGC 0.84864 -229 CGCCCTTGCTCCACCGCATCGGCTTCGGGTATT 38 158 1 CCACCTCGGC 0.65334 -143 TTTGAGTCTGGCACGCCTCGGGCACGCCGGGGT 39 14 1 GCAGCCGGGC 0.960079 -62 GCCTTCGCCTGCTGGACGCGGCCTGCG 41 5 0 GCTGCCGGCC 0.786721 -120 *** * * ***** Masking position 13 Map Score: 86.6385 Number of sites scoring better than the average of aligned sites = 10344 Number in coding regions = 9568 Number in noncoding regions = 776 Number of orfs with sites within 600 bp upstream = 542 Fraction of orfs with sites within 600 bp upstream = 0.0870543 Motif number 8 AGGCCGCGCTCGACGGCGCGCCGCCGATGCC 1 51 1 CGACGCGCGC 0.972718 -250 CCCCGGTGGGCGACGTCTGCCACCAAGCTGA 1 154 0 CGACTCTGCC 0.354406 -147 TTGATCTGGCCGACCCGGGGCAAGTCCACCC 1 240 0 CGACCGGGGC 0.728091 -61 TTTTCGCAGTCGAGGGCTCTCGTGTAGCCTG 3 118 1 CGAGGCTCTC 0.25303 -101 TGCCACGGATCGACCGTGGCCGCACACGACC 3 177 1 CGACGTGGCC 0.22464 -42 ACTGTTGTGGCCTCAGCTCGCC 7 2 0 CCTCGCTCGC 0.702912 -27 CCGACCGCGGCGTGGTCGCGCCAATCACAGC 8 73 1 CGTGTCGCGC 0.822213 -228 GGCGCAAGTCAGAGCGCTGGCCGCGGCGCCT 8 141 0 AGAGGCTGGC 0.229302 -160 CGCCGGTCACCGGCGGCTAGCGGCTCTCCCG 8 253 0 CGGCGCTAGC 0.400358 -48 CCGTTCGGTCGCAACTCAATCT 8 289 0 CGTTGGTCGC 0.79787 -12 GCGTTCACCGCGTCAGGCGGCTTCGGTGAGG 9 29 1 CGTCGGCGGC 0.912379 -103 ATGCCGCCGCCGATGTTGAGCGGAGGCCACA 9 86 1 CGATTTGAGC 0.0380687 -46 CACTTCCGGCCGACCTGTGGCCTCCGCTCAA 9 101 0 CGACTGTGGC 0.915081 -31 TACTTCGCCGGGTGAGGTCGCCGGTGAAGGC 11 206 0 GGTGGGTCGC 0.24285 -95 GACGGCTGGCCGGCATGTCGCGTCGCAGGAT 14 162 0 CGGCTGTCGC 0.595479 -139 GTGAACCACACGACGGCTGGCCGGCATGTCG 14 173 0 CGACGCTGGC 0.977697 -128 GCGCCTAAGCCGATTGCCCGCCTCCTCAGCC 14 234 1 CGATGCCCGC 0.704131 -67 CGGCGCGTATCGTCGGCGCGCTTAAGCTAGC 14 275 1 CGTCGCGCGC 0.967503 -26 GGTTTGATCGCCTCGGCTCGCCCCCTAGCAC 16 34 0 CCTCGCTCGC 0.702912 -40 CAGCGGTGCCCGTGGTCTAGCTGCTTTCGCA 17 70 0 CGTGTCTAGC 0.423509 -227 CGCGGTCCGCCGACTCGTCGCCGCGCGGCGG 17 261 1 CGACCGTCGC 0.815525 -36 TTTCTGACACCGACGTCTCGCTGAAGGTGGT 20 16 1 CGACTCTCGC 0.943221 -40 GTCTCCAACGCGTCGGGGCGG 20 45 1 CGTCGGGCGG 0.465877 -11 ACAACCAATTCGACATTTCGCAAACGAATCG 22 20 1 CGACTTTCGC 0.80334 -30 GTGCGGGTATCGAGACTGCGCCCGGAATCCG 23 11 0 CGAGCTGCGC 0.325303 -55 GCACCCCTGTCGTGAGGCCGCCGGA 24 227 1 CGTGGGCCGC 0.851443 -15 GCAGACGACACGACTTGTGGTTACAGGACAA 25 14 1 CGACTGTGGT 0.133432 -39 TATCCCGAGCCGATAGCTGGCGGGCTCGG 26 9 0 CGATGCTGGC 0.844404 -148 TTAACGATATCGTGAGTTGGCGGCTCTGCGG 26 44 1 CGTGGTTGGC 0.810444 -113 GTCGCGATCGCGTCAGGAGGCGATGGTCCCT 27 32 0 CGTCGGAGGC 0.642866 -64 GACGCGATCGCGACAGCTGGCTAACGTCGGT 27 49 1 CGACGCTGGC 0.977697 -47 GGGCTTTCCGCGCGGGTGGGCACCACCCGAG 28 27 0 CGCGGTGGGC 0.381611 -175 CCGTCCGAACCGTGATTGGGCAACGTCGGGC 28 57 1 CGTGTTGGGC 0.495302 -145 GACGCTCAACCGACGGTTGGCTCAACCCTGC 28 162 0 CGACGTTGGC 0.915106 -40 ACGGTTTGGGCGACTGGTTGCAACAGCAAGT 29 30 0 CGACGGTTGC 0.512261 -234 CGGCGCAGGTCCACCTCTGGCCTATCACACG 29 214 0 CCACTCTGGC 0.44433 -50 CTCGATCGATCGTCGGTCGGCGCAGGTCCAC 29 231 0 CGTCGTCGGC 0.773056 -33 TCTGCCCAGCCGTGCGCTGGCGGCCGAGTAG 30 22 1 CGTGGCTGGC 0.945614 -31 GGCGGCAGGGTGAGGGCTGGCGGTCACCGAT 31 64 0 TGAGGCTGGC 0.344109 -24 GGAGCTTTTGCGTCTTTTCGCGGTGG 32 6 0 CGTCTTTCGC 0.773297 -84 GGAGCTTTTGCGTCTGCTCGCGCACCCCGGA 32 55 1 CGTCGCTCGC 0.976968 -35 AACCCATGCCCGTGGGTTGGCTTTGGCGCGC 33 39 1 CGTGGTTGGC 0.810444 -43 ACTTCATTGTCGTCGGCGCGCC 34 2 0 CGTCGCGCGC 0.967503 -69 GGTGTATTCCCGTCGACTCGCTGTGCCCGGC 35 43 1 CGTCACTCGC 0.484819 -122 GCCGCGCTTGCGATCGCCCGCTGGGTTTGTT 35 77 1 CGATGCCCGC 0.704131 -88 AAGGGCTGATCGTTTTGGCGCTACCGCACAA 36 155 0 CGTTTGGCGC 0.475356 -146 AGGCTCGGGGCGCGGGCTGGCGCGGAGGAGG 36 255 1 CGCGGCTGGC 0.781443 -46 CCGCGGAGTTCGTCGGCTCGGTCAATGGCGG 37 33 0 CGTCGCTCGG 0.623099 -268 CGAACACAACCGTGCGGCCGCGGAGTTCGTC 37 50 0 CGTGGGCCGC 0.851443 -251 CCGCCCGGGTCGTCGCCGCGCTAGGTTAGCG 37 192 0 CGTCCCGCGC 0.775127 -109 CGTGTCGCCACGCCGTGGGGCGTGCGACATG 37 244 0 CGCCTGGGGC 0.564986 -57 ACGAAGAAATCGACCGGTAGCAGGC 38 5 0 CGACGGTAGC 0.809786 -296 TCGTCGAAATCGACAGCACGCCCTTGCTCCA 38 140 1 CGACGCACGC 0.768688 -161 TCGGGTATTTCGTCCTGTGGACCGCCGCCTA 38 182 1 CGTCTGTGGA 0.113929 -119 AAACGCGATGTGAGGGGTGGCTACCATGGCG 38 220 0 TGAGGGTGGC 0.282829 -81 GTTGGCTACCCGACAGGGCGCCGTTACACAA 39 45 1 CGACGGGCGC 0.964029 -31 GTCACTGCAACGAGCTGCCGCTGCAATTACA 41 81 1 CGAGTGCCGC 0.691797 -44 GCGCCTCATCCGACTTCTAGCCGC 42 4 0 CGACTCTAGC 0.649387 -297 AACGCATCGCCGACCTGCCGCGCCTCATCCG 42 23 0 CGACTGCCGC 0.825345 -278 CACCGATTCGCGATATCTGGCGGAGCCGGTG 42 178 1 CGATTCTGGC 0.639608 -123 **** ****** Masking position 2 Map Score: 82.4898 Number of sites scoring better than the average of aligned sites = 15410 Number in coding regions = 14158 Number in noncoding regions = 1252 Number of orfs with sites within 600 bp upstream = 792 Fraction of orfs with sites within 600 bp upstream = 0.127208 Motif number 9 GCGCGGCGGGGGCATCGGCGGCGCGCCGTC 1 62 0 GGCATCGGCG 0.819441 -239 GTTCGCGATAGGCCTCGCCGTTCGCGACAC 3 14 1 GGCCTCGCCG 0.945169 -205 CAGGAGGGTCGCCTGCGTCGGCAACTCGCC 3 149 0 GCCTGCGTCG 0.637875 -70 GGTCGTGTTCTTCTTCGCCGAGCCTACGTA 4 50 0 TTCTTCGCCG 0.830721 -54 GCGTCCGCCTGGGTTCGGCGGCTGGTCGTG 4 73 0 GGGTTCGGCG 0.78047 -31 ACAGCGTCGGTCCTTCGTCGGTCCGGC 8 8 0 TCCTTCGTCG 0.803248 -293 GAAAGTCGCGGCCCTCGGCGCGGGCCTGAC 8 202 0 GCCCTCGGCG 0.898881 -99 CGCGTCAGGCGGCTTCGGTGAGGTGAGTAA 9 37 1 GGCTTCGGTG 0.803339 -95 CCGTTAGCCAGGCGTTGCCGCGTCGTTGGG 11 60 1 GGCGTTGCCG 0.846158 -241 GGTCCGGACTGCCTTCACCGGCGACCTCAC 11 196 1 GCCTTCACCG 0.69134 -105 GACTTGCGCATACTTCGCCGGGTGAGGTCG 11 217 0 TACTTCGCCG 0.504659 -84 ACGTAGGCGCTTCTTCGGCGAATATTGAAC 14 32 1 TTCTTCGGCG 0.77896 -269 GCGGGCAATCGGCTTAGGCGCGCCGCGGGG 14 225 0 GGCTTAGGCG 0.744631 -76 ACGCGGCAGGTCCTTCGGCGCCACCACCCA 17 206 0 TCCTTCGGCG 0.902774 -91 AGCCTGGCCAGGCTATGCCGCGGTCCGCCG 17 243 1 GGCTATGCCG 0.46643 -54 GGCCCCGGCGGCCGTTGCCGACACCTCGGC 29 92 0 GCCGTTGCCG 0.797969 -172 CCCGTGGGTTGGCTTTGGCGCGCGCGCACC 33 47 1 GGCTTTGGCG 0.933534 -35 CGACTTCATTGTCGTCGGCGCGCC 34 5 0 GTCGTCGGCG 0.86586 -66 CGCTGTGCCCGGCTTCGCCGCGCTTGCGAT 35 61 1 GGCTTCGCCG 0.991545 -104 TCGCTGCGGCGGCTTCGCCGCGCTTGCGAT 35 118 1 GGCTTCGCCG 0.991545 -47 GAAAGGCCCCGGCTTCGGCAAGTCGGTGTC 36 14 0 GGCTTCGGCA 0.698481 -287 GTCAGCACCCGCCTTGGCCGGGAGAGCGGC 36 195 1 GCCTTGGCCG 0.812091 -106 CACCGCCCGGGTCGTCGCCGCGCTAGGTTA 37 195 0 GTCGTCGCCG 0.899887 -106 ACCGGTCGATTTCTTCGTCGTCGGCGACCG 38 18 1 TTCTTCGTCG 0.607759 -283 CGTCGACCAAGCCTTCGTCGTTCCGGTCGC 38 41 0 GCCTTCGTCG 0.963757 -260 CGACGACGTCGGCTTCGCTGGCGTCTCGGT 38 66 1 GGCTTCGCTG 0.850487 -235 TGTCCAACCCGGCTTCGTCGTCGAAATCGA 38 123 1 GGCTTCGTCG 0.973705 -178 TTGCTCTGATGCCTTCGCCTGCTGGACGCG 41 18 0 GCCTTCGCCT 0.698481 -107 GACGTTCCTAGCTTTCGCCGATTCGCGACA 42 97 1 GCTTTCGCCG 0.808788 -204 TATCGGCGACGGCTTTGTCGCGAATCGGCG 42 112 0 GGCTTTGTCG 0.860636 -189 GCGGTAGGCGGTTTTTGTCGGTGCCTGTTG 43 11 1 GTTTTTGTCG 0.0779423 -33 ********** Masking position 7 Map Score: 54.1869 Number of sites scoring better than the average of aligned sites = 7720 Number in coding regions = 7329 Number in noncoding regions = 391 Number of orfs with sites within 600 bp upstream = 327 Fraction of orfs with sites within 600 bp upstream = 0.0525217 Motif number 10 TCTCCGTTGGACATTCGGCG 6 1 0 ACATTCGGCG 0.637413 -32 GCCGTGCTGCGCGCCAGGCGCCGCGGCCAG 8 126 1 GCGCCAGGCG 0.846504 -175 GCCAGGCGCCGCGGCCAGCGCTCTGACTTG 8 138 1 GCGGCCAGCG 0.780543 -163 GAAAGTCGCGGCCCTCGGCGCGGGCCTGAC 8 202 0 GCCCTCGGCG 0.613494 -99 CGCTACAATCGCGCGCGGCGCGGGAGAGCC 8 233 1 GCGCGCGGCG 0.919829 -68 TGCGTTCACCGCGTCAGGCGGCTTCGGTGA 9 28 1 GCGTCAGGCG 0.793891 -104 CGGACCAAAAGAATCCATCGCCAGTGCATC 10 43 1 GAATCCATCG 0.398775 -101 CATCGCCAGTGCATCCAGCGGGCCATAGGG 10 58 1 GCATCCAGCG 0.956798 -86 CGGCGTATTTGCACCCGTCAGCCTACAAGT 10 110 0 GCACCCGTCA 0.553911 -34 CACGGCGTCTGCATTCATCGCTCGCAGACC 11 161 1 GCATTCATCG 0.437468 -140 ACCGGCGACCTCACCCGGCGAAGTATGCGC 11 212 1 TCACCCGGCG 0.730069 -89 GAGCATTGCTGCATCCATCGCACGGGCT 12 34 1 GCATCCATCG 0.823419 -18 GCGGCGTACGGCGGTAGTCGGCA 13 4 1 GCGTACGGCG 0.838203 -197 CGCAACTGCCGCGTGCGGCGCGACTGCCGA 13 28 0 GCGTGCGGCG 0.889055 -173 CGCAGGATTCACACTCGGAGCATGAGCCGG 14 140 0 ACACTCGGAG 0.252969 -161 CTCCGAGTGTGAATCCTGCGACGCGACATG 14 150 1 GAATCCTGCG 0.251067 -151 CGTGTGGTTCACACCCGGCGATGATGCCCG 14 192 1 ACACCCGGCG 0.937859 -109 TTCCCCGCAGCGCCCGGCTAATGGTGCTA 16 10 1 GCGCCCGGCT 0.769678 -64 CGCGGCCGGAACACTCGGTGGTTTGATCGC 16 54 0 ACACTCGGTG 0.2156 -20 TTGCGCGGGCGCGTCCGTTGATGGCACACT 17 147 0 GCGTCCGTTG 0.661137 -150 AGAAACACCGGAGTCCGGCGCTCG 19 5 0 GAGTCCGGCG 0.923486 -52 AACCGCCATAAAATCCGGCG 21 1 0 AAATCCGGCG 0.599895 -94 TATGGCGGTTGCGCCCAACGACATTCGAGC 21 21 1 GCGCCCAACG 0.601102 -74 TATCGAGACTGCGCCCGGAATCCG 23 5 0 GCGCCCGGAA 0.531837 -61 TTACCGTCGAGCGTCCAGTGCGGGTATCGA 23 29 0 GCGTCCAGTG 0.775924 -37 GCATCCATAGTGCCTGGTTA 23 56 0 GCATCCATAG 0.385514 -10 GCTGAATTGTACATCCATAGCAGATATGAT 26 98 0 ACATCCATAG 0.100385 -59 TCCTGTCACTGCGCCCGGAGCGACACACAT 29 142 0 GCGCCCGGAG 0.942348 -122 CCTGGGTTCCGCACCCGGTGCGCGACCGTG 29 188 1 GCACCCGGTG 0.902595 -76 GCCGCCAAACAAACCCAGCGGGCGATCGCA 35 85 0 AAACCCAGCG 0.445123 -80 CGCAGATATCGCACACAGCGGCCATTCGTC 36 45 1 GCACACAGCG 0.659394 -256 TGCGGCCGCGGAGTTCGTCGGCTCGGTCAA 37 39 0 GAGTTCGTCG 0.297657 -262 CGCAGGCCGCGTCCAGCAGGCGAAGGCA 41 9 1 GCGTCCAGCA 0.687872 -116 ********** Masking position 6 Map Score: 29.5944 Number of sites scoring better than the average of aligned sites = 19410 Number in coding regions = 18039 Number in noncoding regions = 1371 Number of orfs with sites within 600 bp upstream = 853 Fraction of orfs with sites within 600 bp upstream = 0.137006 Motif number 11 ACTCCATCGAGGCGGTCAAGGCCGCGCTCG 1 33 1 GGCGGTCAAG 0.863293 -268 ACCCGCTCGAGGAGGTCACGGCCGCGTTGG 1 93 1 GGAGGTCACG 0.427343 -208 TACCGGGCGGGGCGGCCAACGCGGCCGTGA 1 108 0 GGCGGCCAAC 0.906277 -193 ATCCCCCCGCGGCGGTTTACCGGGCGGGGC 1 125 0 GGCGGTTTAC 0.723256 -176 GGGCGGCCCCGGTGGGCGACGTCTGCCACC 1 161 0 GGTGGGCGAC 0.622136 -140 CGCCGCGGTGAGGTACAGCGAACGCC 1 285 0 GGTGAGGTAC 0.0689155 -16 TGTGGTCGTGTGCGGCCACGGTCGATCCGT 3 181 0 TGCGGCCACG 0.651941 -38 CGCAAACTGTTGTGGCCTCAGCTCGCC 7 8 0 TGTGGCCTCA 0.18455 -21 ATCTCCAATCGCCGGTCACCGGCGGCTAGC 8 263 0 GCCGGTCACC 0.495478 -38 CACCGCGTCAGGCGGCTTCGGTGAGGTGAG 9 34 1 GGCGGCTTCG 0.843963 -98 CCGGCCGACCTGTGGCCTCCGCTCAACATC 9 97 0 TGTGGCCTCC 0.68931 -35 CAGTGGATGCGGTGGGGTCCGTGAATCAGC 11 16 0 GGTGGGGTCC 0.888108 -285 ACGCGCCGGTGGCGGGCACGTGAAACCGAC 11 99 0 GGCGGGCACG 0.963874 -202 CTTGAGTACGGGCGGGCCCGTGACGCGCCG 11 121 0 GGCGGGCCCG 0.932349 -180 GCCGCGGGGCGGCGGGCATCATCGCCGGGT 14 204 0 GGCGGGCATC 0.630856 -97 GGTGGGCTAGCTTAAGCGCG 14 291 0 GGTGGGCTAG 0.91253 -10 CCCCAGTGGGGTGGGATACCATGAACGGG 18 10 1 GGTGGGATAC 0.362503 -40 TCTCGCTGAAGGTGGTCTCCAACGCGTCGG 20 31 1 GGTGGTCTCC 0.930725 -25 GGTTCACATCGGTGGTCTACGTTCTGGTGT 21 75 1 GGTGGTCTAC 0.910234 -20 TCCGGCGGCCTCACGACAGGGGT 24 229 0 GGCGGCCTCA 0.796848 -13 GCCGATAGCTGGCGGGCTCGG 26 2 0 GGCGGGCTCG 0.980753 -155 TTTCCGCGCGGGTGGGCACCACCCGAGCAG 28 24 0 GGTGGGCACC 0.876581 -178 GCGGCGAGTTGGTGGCCCCGGCGGCCGTTG 29 105 0 GGTGGCCCCG 0.837698 -159 ATCCGGGCGGTTTCGGGCGCTTTCA 31 6 1 GGCGGTTTCG 0.81626 -82 GGTGAGGGCTGGCGGTCACCGATCAATTCT 31 57 0 GGCGGTCACC 0.895286 -31 GAGTCGCTGCGGCGGCTTCGCCGCGCTTGC 35 115 1 GGCGGCTTCG 0.843963 -50 CTGTGCTAGCCGCGGGCTACACGTAGGCGT 36 114 0 CGCGGGCTAC 0.559485 -187 CGCTGAGGTAGGCGGTGTCCAACCCGGCTT 38 108 1 GGCGGTGTCC 0.900001 -193 GGTCGTAGGCGGCGGTCCACAGGACGAAAT 38 188 0 GGCGGTCCAC 0.83386 -113 CGATGTGAGGGGTGGCTACCATGGCGGCGG 38 216 0 GGTGGCTACC 0.653363 -85 GGCACGCCGGGGTTGGCTACCCGACAGGGC 39 34 1 GGTTGGCTAC 0.290604 -42 TGGCGGAGCCGGTGGTGTCGCAGCAGGGAC 42 195 1 GGTGGTGTCG 0.757398 -106 TAGCCGAACGTGTGGTCTACGTGAGTAATA 42 273 1 TGTGGTCTAC 0.487844 -28 ********** Masking position 5 Map Score: 38.5622 Number of sites scoring better than the average of aligned sites = 12245 Number in coding regions = 11539 Number in noncoding regions = 706 Number of orfs with sites within 600 bp upstream = 499 Fraction of orfs with sites within 600 bp upstream = 0.0801478 Motif number 12 ACCTCCTCGAGCGGGTCGCGCGGCGGGGGC 1 79 0 GCGGGTCGCG 0.988564 -222 AAGTCCACCCTCGGTTGGGGCAGCCGGCCG 1 220 0 TCGGTTGGGG 0.789381 -81 CGCGGTTGGCCCCTACGAGGT 2 2 1 GCGGTTGGCC 0.720032 -30 TCTGTTCGCGATAGGCCTCG 3 1 1 TCTGTTCGCG 0.85904 -218 GATAGGCCTCGCCGTTCGCGACACTGACAT 3 20 1 GCCGTTCGCG 0.833921 -199 ACGATCCGCGGCGTGTCGTGTGCGCAATGT 3 46 0 GCGTGTCGTG 0.611894 -173 CATCACCTCCTGTGGTCGTGTGCGGCCACG 3 191 0 TGTGGTCGTG 0.135711 -28 CTGGCTGTTCGCTGTCGGTGCGGTTACGTA 4 26 1 GCTGTCGGTG 0.585483 -78 GGGTTCGGCGGCTGGTCGTGTTCTTCTTCG 4 63 0 GCTGGTCGTG 0.897813 -41 GCGACGCACTGCAGGCCGTGCTGCGCGCCA 8 112 1 GCAGGCCGTG 0.608128 -189 GCTGGCCGCGGCGCCTGGCGCGCAGCACGG 8 127 0 GCGCCTGGCG 0.464942 -174 AAGTCAGAGCGCTGGCCGCGGCGCCTGGCG 8 137 0 GCTGGCCGCG 0.926017 -164 ACAATCGCGCGCGGCGCGGGAGAGCCGCTA 8 237 1 GCGGCGCGGG 0.697426 -64 CCGGTCACCGGCGGCTAGCGGCTCTCCCGC 8 252 0 GCGGCTAGCG 0.538417 -49 TCCGATTTCTGCGGTTGGCGTGCTAGGTTT 10 17 0 GCGGTTGGCG 0.967725 -127 CCCGTGACGCGCCGGTGGCGGGCACGTGAA 11 105 0 GCCGGTGGCG 0.914295 -196 TCTGGCGGCGTTGAGCAACT 12 1 1 TCTGGCGGCG 0.857166 -51 CGGCTGGCCGGCATGTCGCGTCGCAGGATT 14 161 0 GCATGTCGCG 0.365838 -140 TTTGATCGCCTCGGCTCGCCCCCTAGCACC 16 33 0 TCGGCTCGCC 0.595933 -41 GATGGCACACTCGGTTCGTGCTCAACGCGC 17 128 0 TCGGTTCGTG 0.863891 -169 GCACCCAAAATTGGGTGGTGGCGCCGAAGG 17 195 1 TTGGGTGGTG 0.339216 -102 GATTAACCATTCTGGCGGGGTGCGTTACCC 24 84 0 TCTGGCGGGG 0.573209 -158 CCGCCAGCTATCGGCTCGGGATATCGGTTA 26 17 1 TCGGCTCGGG 0.793734 -140 GCAGATATGATCGGCGCGCGTCACAAGCTT 26 79 0 TCGGCGCGCG 0.851909 -78 CGCGATCGCGTCAGGAGGCGATGGTCCCTA 27 31 0 TCAGGAGGCG 0.392195 -65 TGCGATCTGCTCGGGTGGTGCCCACCCGCG 28 18 1 TCGGGTGGTG 0.930961 -184 TTGGGCAACGTCGGGCCGGGCCAGCAGCGC 28 72 1 TCGGGCCGGG 0.833564 -130 CGATCGATCGTCGGTCGGCGCAGGTCCACC 29 230 0 TCGGTCGGCG 0.885869 -34 AGCTTTTGCGTCTTTTCGCGGTGG 32 5 0 TCTTTTCGCG 0.254635 -85 AGCTTTTGCGTCTGCTCGCGCACCCCGGAG 32 57 1 TCTGCTCGCG 0.843046 -33 TGTTCCTTTCGCGGTGCGCGCGCGCCAAAG 33 59 0 GCGGTGCGCG 0.921172 -23 CCCGGCCAAGGCGGGTGCTGACATGTCCGC 36 187 0 GCGGGTGCTG 0.580623 -114 CTGGTTAGGCTCGGGGCGCGGGCTGGCGCG 36 249 1 TCGGGGCGCG 0.941703 -52 TGGGAACAGTTCTGTTGCCGCCATTGACCG 37 16 1 TCTGTTGCCG 0.230767 -285 CGTAAGCGATTCGGTTGGCCGTGAGCGCTG 37 94 1 TCGGTTGGCC 0.589565 -207 TCGCCACGCCGTGGGGCGTGCGACATGAAC 37 241 0 GTGGGGCGTG 0.263744 -60 GCCTTCGCCTGCTGGACGCGGCCTGCG 41 8 0 GCTGGACGCG 0.77933 -117 ATCTGGCGGAGCCGGTGGTGTCGCAGCAGG 42 192 1 GCCGGTGGTG 0.776326 -109 GGCTAGGCGAGCAGGTGGTGGTGGTTCTTT 42 248 0 GCAGGTGGTG 0.741878 -53 GCGGTAGGCGGTTTTTGTCG 43 1 1 GCGGTAGGCG 0.796796 -43 ********** Masking position 8 Map Score: 42.9357 Number of sites scoring better than the average of aligned sites = 19083 Number in coding regions = 17719 Number in noncoding regions = 1364 Number of orfs with sites within 600 bp upstream = 852 Fraction of orfs with sites within 600 bp upstream = 0.136845 Motif number 13 GACCGATCGGCTCCGCACGCGGA 1 1 1 GACCGATGTC 0.840095 -300 CCAAGTTAATGACCAAATTACTCACCTCACCGA 9 51 0 GACCAAAATC 0.948879 -81 GCAGAAATCGGACCAAAAGAATCCATCGCCAGT 10 35 1 GACCAAAATC 0.958124 -109 ACGTGAAACCGACCCAAACGATCCCAACGACGC 11 79 0 GACCCAAGTC 0.978432 -222 ATCGCTCGCAGACCAAAGGGGTCCGGACTGCCT 11 177 1 GACCAAAGTC 0.714683 -124 TTGTGCCAGTGACCAATTCAATCGCATACCGCA 24 134 1 GACCAATATC 0.869235 -108 ACGCAGGAACGACCAAAAATCTCGATTGCATTG 24 165 0 GACCAAATTC 0.901244 -77 ACCGCGAAAAGACGCAAAAGCTCCCAAATCCGG 32 13 1 GACGCAAGTC 0.946254 -77 TGCGCGAGCAGACGCAAAAGCTCCCAAATCCGA 32 46 0 GACGCAAGTC 0.946254 -44 ******* * ** Masking position 6 Map Score: 5.25997 Number of sites scoring better than the average of aligned sites = 95 Number in coding regions = 80 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 14 ********** No masking Map Score: 1.04048e-11 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 CCTCCTCGAGCGGGTCGCGCGGCGGGGGCAT 1 77 0 CGGTCGCGCG 0.562564 -224 GTGCGCAATGTCAGTGTCGCGAACGGCGAGG 3 26 0 TCGTGTCGCG 0.632451 -193 GACGATCCGCGGCGTGTCGTGTGCGCAATGT 3 46 0 GGGTGTCGTG 0.672397 -173 CGCACTGCAGGCCGTGCTGCGCGCCAGGCGC 8 116 1 GCGTGCTGCG 0.679539 -185 TATGCGCAGAGGCGTGGAGCGTTGTTGAGGT 8 173 1 GGGTGGAGCG 0.907752 -128 AGGCCCGCGCCGAGGGCCGCGACTTTCTCGC 8 205 1 CGGGGCCGCG 0.823401 -96 GCGCCGCGCGCGATTGTAGCGAGAAAGTCGC 8 223 0 CGTTGTAGCG 0.529698 -78 GCTACAATCGCGCGCGGCGCGGGAGAGCCGC 8 234 1 CGGCGGCGCG 0.688486 -67 TCACCGAAGCCGCCTGACGCGGTGAACGCAC 9 27 0 CGCTGACGCG 0.566142 -105 CCGTGACGCGCCGGTGGCGGGCACGTGAAAC 11 103 0 CCGTGGCGGG 0.750629 -198 TACGGGCGGGCCCGTGACGCGCCGGTGGCGG 11 114 0 CCGTGACGCG 0.783428 -187 GCGCAACTGCCGCGTGCGGCGCGACTGCCGA 13 28 0 CGGTGCGGCG 0.908242 -173 AGCATGAGCCGGCGCGCCGCGATCGGCAGTC 14 121 0 GGGCGCCGCG 0.896912 -180 ACGGCTGGCCGGCATGTCGCGTCGCAGGATT 14 161 0 GGATGTCGCG 0.789859 -140 AATCGGCTTAGGCGCGCCGCGGGGCGGCGGG 14 218 0 GGGCGCCGCG 0.896912 -83 ATCAAACCACCGAGTGTTCCGGCCGCG 16 57 1 CGGTGTTCCG 0.298789 -17 TACCCCGAAACGGGTGAAGCGGCCGCTGGAT 24 58 0 CGGTGAAGCG 0.91454 -184 CAGGATGAACCGAGTGTAGGGACGCAGGAAC 24 188 0 CGGTGTAGGG 0.709035 -54 CGGCCGGAAGCTTGTGACGCGCGCCGATCAT 26 72 1 CTGTGACGCG 0.66879 -85 CTTTCATGCCGGTGTGAAGCGGTTCCTAGAA 31 30 1 GGGTGAAGCG 0.895846 -58 CTCGCGCACCCCGGAGTAGCGTCAAACCC 32 71 1 CCGAGTAGCG 0.296082 -19 CCGGAATCAAGGAGTGACGCGTGTGACG 34 53 1 GGGTGACGCG 0.973903 -18 CCGTTGTACTCCTGTGGCGCGGATCTGGGTG 35 16 1 CCGTGGCGCG 0.959398 -149 GCGCGGAGGAGGTGTGTTGCGGAGGAGGTGT 36 274 1 GGGTGTTGCG 0.883728 -27 GACGACCCGGGCGGTGTGGCGGCTCGGCAGT 37 209 1 GCGTGTGGCG 0.829002 -92 TGACAGACCGGGCGTGTCGCCACGCCGTGGG 37 256 0 GGGTGTCGCC 0.728328 -45 GGCTAGAAGTCGGATGAGGCGCGGCAGGTCG 42 13 1 CGATGAGGCG 0.355346 -288 ATCGGCGACGGCTTTGTCGCGAATCGGCGAA 42 110 0 GCTTGTCGCG 0.604594 -191 TTTCCAGCTGCGTGTATCGGGAAGGACCTGG 44 27 1 CGGTATCGGG 0.242333 -40 ** ******** Masking position 9 Map Score: 30.6469 Number of sites scoring better than the average of aligned sites = 4523 Number in coding regions = 4073 Number in noncoding regions = 450 Number of orfs with sites within 600 bp upstream = 351 Fraction of orfs with sites within 600 bp upstream = 0.0563765