AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00950_mtub_reg_100.orf -o00950_mtub_100.ace -a/home/amcguire/genomes/ORF_mtub.txt -z/home/amcguire/genomes/mtub.fna -g0.66 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: Rv1178 32 hypothetical protein Rv1178 Input sequences: #1 Rv0187 300 hypothetical protein Rv0187 #2 aspC 30 aspC #3 Rv0338c 108 hypothetical protein Rv0338c #4 Rv0552 77 hypothetical protein Rv0552 #5 menD 42 menD #6 Rv0557 61 hypothetical protein Rv0557 #7 Rv0858c 156 hypothetical protein Rv0858c #8 Rv1009 207 hypothetical protein Rv1009 #9 fdxC 212 fdxC #10 cobG 224 cobG #11 cobL 67 cobL #12 Rv2073c 29 hypothetical protein Rv2073c #13 Rv2689c 173 hypothetical protein Rv2689c #14 fadD3 47 fadD3 Motif number 1 CGCTGCACCTGCGGCGACGAATTG 1 5 0 GCGGCGACGA 0.808002 -296 CACTGTGCTGGCGCCGGTGACGCCTACCGC 1 32 0 GCGCCGGTGA 0.986375 -269 GAAGTCCCATGCCACTGTGCTGGCGCCGGT 1 44 0 GCCACTGTGC 0.631785 -257 CTGACCTGCAGCCACGAGGGCTGTGGCTGT 1 86 0 GCCACGAGGG 0.907398 -215 ATGACGAACTACGAGGCTGGGACCTTGCTG 1 113 0 ACGAGGCTGG 0.584329 -188 CTGCTGGCGCGCGACGGTCGGTGGTCGCGC 1 275 1 GCGACGGTCG 0.968617 -26 GCGCGGCCCGGCCATACGGT 5 1 1 GCGCGGCCCG 0.923504 -42 CAACAGGTTGGCCGGGGGCCCTGTTAGGGT 7 83 0 GCCGGGGGCC 0.72115 -74 GCGACGATGCGCGCCGCAGCGATACCTTGC 7 118 0 GCGCCGCAGC 0.863452 -39 GCCTATCCGGGCGACGATGCGCGCCGCAGC 7 128 0 GCGACGATGC 0.99012 -29 GCGCGCCGAGCGGCCCATAACA 8 3 1 GCGCCGAGCG 0.973848 -205 CAACTCCGGCGCGCGGGTGTTATGGGCCGC 8 20 0 GCGCGGGTGT 0.96326 -188 TTGACCGTGTACGCCGACGCATGTGCCAAG 9 59 1 ACGCCGACGC 0.55412 -154 CCTCAGCAGGGCCCGGAGGAAGCCTTGGCG 9 137 1 GCCCGGAGGA 0.910942 -76 GGAAGCCTTGGCGAGGTGGACAGCAGCCCA 9 154 1 GCGAGGTGGA 0.763078 -59 GCTGCCGATAGCGTCGCGGTGTGCCGCGGC 10 48 1 GCGTCGCGGT 0.652294 -177 ACGAGCGACCGCGCGGACGCCGCGGCACAC 10 66 0 GCGCGGACGC 0.94708 -159 GACTCGTGGAGCGACTCGGCGCCCTCAAAC 10 100 1 GCGACTCGGC 0.898834 -125 CCTCAAACCCGCCACGATGCGCGCAATCGA 10 122 1 GCCACGATGC 0.960895 -103 AATCGAAAACGCCCTGACCCTGATCCTCGG 10 146 1 GCCCTGACCC 0.634514 -79 CCTGAGCGCGGCGAGGCGGCGACCCATTCT 10 189 1 GCGAGGCGGC 0.990313 -36 TCCGCGACGATGCAGAGCGCAGC 11 4 1 GCGACGATGC 0.99012 -64 GCAGAGCGCAGCGATGCGGTGGGGGTACCG 11 22 1 GCGATGCGGT 0.845113 -46 CGGCGCCGCTCTCCCCCGCAAG 11 56 0 GCGCCGCTCT 0.959933 -12 ATCGTCGCCGGCGCGGGTCAATCGAAGATG 13 16 0 GCGCGGGTCA 0.969497 -158 ACCCGCGCCGGCGACGATGCAGAGCAAAGC 13 28 1 GCGACGATGC 0.99012 -146 GCAGAGCAAAGCGATGGGGAGGAGCGGCGC 13 46 1 GCGATGGGGA 0.928804 -128 CGGGTCACTGGCGCCGCTCCTCCCCATCGC 13 56 0 GCGCCGCTCC 0.992996 -118 ATCGTCGCCGGCGCGGGTCACTGGCGCCGC 13 69 0 GCGCGGGTCA 0.969497 -105 ACCCGCGCCGGCGACGATGCAGAGCAAAGC 13 81 1 GCGACGATGC 0.99012 -93 GCAGAGCAAAGCGATGGGGAGGAGCGGCGC 13 99 1 GCGATGGGGA 0.928804 -75 CGGGTCACTGGCGCCGCTCCTCCCCATCGC 13 109 0 GCGCCGCTCC 0.992996 -65 ATCGTCGCCGGCGCGGGTCACTGGCGCCGC 13 122 0 GCGCGGGTCA 0.969497 -52 ACCCGCGCCGGCGACGATGCAGAGCAAAGC 13 134 1 GCGACGATGC 0.99012 -40 GCAGAGCAAAGCGATGGGGAGGAGCGGCGC 13 152 1 GCGATGGGGA 0.928804 -22 TGGCGCCGCTCCTCCCCATCGC 13 162 0 GCGCCGCTCC 0.992996 -12 ********** Masking position 2 Map Score: 76.4544 Number of sites scoring better than the average of aligned sites = 29673 Number in coding regions = 27508 Number in noncoding regions = 2165 Number of orfs with sites within 600 bp upstream = 1029 Fraction of orfs with sites within 600 bp upstream = 0.165275 Motif number 2 TGCTGGCGCCGGTGACGCCTACCGCTGCACCTGC 1 23 0 GTGCGCACCG 0.988621 -278 AGCCACGAGGGCTGTGGCTGTCGGGTTCGCATCG 1 73 0 GTGGGCTCGG 0.967183 -228 CCTCATCCGTGTCGGGGATCCCCGAGGAATCCCA 1 152 1 GCGGGACCCG 0.985526 -149 ATTACCGACAGCTGACCACCTGGGATTCCTCGGG 1 172 0 GTGCCATGGG 0.625444 -129 TTAAGTAGCTGTTCTGGATTACCGACAGCTGACC 1 189 0 GTCGGAACCG 0.870172 -112 ACCACCGACCGTCGCGCGCCAGCAGGCAACCGCC 1 266 0 GCGGCGAGCA 0.611148 -35 GCGCGGCCCGGCCATACGGTCCGGCTGTG 5 6 1 GCCGCCACGG 0.807691 -37 AAATGGTTGCGTAGCGGCATACGGCGTGCGAACT 6 18 0 GAGGGCACGG 0.891904 -44 CATTTCGACAGCCGGCGCTGACAGT 6 47 1 GCGCGCACAG 0.946055 -15 AGCCTATCCGGGCGACGATGCGCGCCGCAGCGAT 7 125 0 GCGCGACGCG 0.968022 -32 GGCGGTCGAGCCTATCCGGGCGACGATG 7 139 0 GCGGCCTCCG 0.985175 -18 ACCGGCCAATGTTGAGCAACTCCGGCGCGCGGGT 8 32 0 GTGGCATCCG 0.91331 -176 GTGGTTGAGTGTTGCCGAGGTCGGGGATATAGCG 8 143 1 GTGCGATCGG 0.865008 -65 TGGCACATGCGTCGGCGTACACGGTCAATATGCA 9 53 0 GCGCGTACGG 0.892485 -160 TCCGGGCCCTGCTGAGGCAATGCGTTCGGTTACT 9 120 0 GTGGGCTGCG 0.98723 -93 AGGAAGCCTTGGCGAGGTGGACAGCAGCCCACAC 9 153 1 GCGGGTACAG 0.774309 -60 CCGCGCGGACGCCGCGGCACACCGCGACGCTATC 10 54 0 GCGGGCACCG 0.998098 -171 CGCTCCACGAGTCGGGCACGAGCGACCGCGCGGA 10 79 0 GCGGCAAGCG 0.984233 -146 GTTTGAGGGCGCCGAGTCGCTCCACGAGTCGGGC 10 96 0 GCGGTCTCCA 0.558353 -129 CCGTCGGGAGGCCGAGGATCAGGGTCAGGGCGTT 10 153 0 GCGGGAAGGG 0.987607 -72 GGGAGAATGGGTCGCCGCCTCGCCGCGCTCAGGT 10 188 0 GCGCGCCGCC 0.595573 -37 TCCGCGACGATGCAGAGCGCAGCGATGCG 11 6 1 GCGTGCAGCG 0.986902 -62 CGGCGCCGCTCTCCCCCGCAAGCGG 11 53 0 GCGCGCTCCC 0.918036 -15 CCGCGCCGGCGACGATGCAGAGCAAAGCGATGGG 13 30 1 GCGTGCAGCA 0.917024 -144 AGAGCAAAGCGATGGGGAGGAGCGGCGCCAGTGA 13 48 1 GTGGGAAGCG 0.987299 -126 CCGCGCCGGCGACGATGCAGAGCAAAGCGATGGG 13 83 1 GCGTGCAGCA 0.917024 -91 AGAGCAAAGCGATGGGGAGGAGCGGCGCCAGTGA 13 101 1 GTGGGAAGCG 0.987299 -73 CCGCGCCGGCGACGATGCAGAGCAAAGCGATGGG 13 136 1 GCGTGCAGCA 0.917024 -38 AGAGCAAAGCGATGGGGAGGAGCGGCGCCA 13 154 1 GTGGGAAGCG 0.987299 -20 * ** *** **** Masking position 1 Map Score: 53.5784 Number of sites scoring better than the average of aligned sites = 24097 Number in coding regions = 22476 Number in noncoding regions = 1621 Number of orfs with sites within 600 bp upstream = 920 Fraction of orfs with sites within 600 bp upstream = 0.147767 Motif number 3 TCATCCGTGTCGGGGATCCCCGAGGAATCCCA 1 154 1 CGGGGCCCCG 0.495199 -147 GGCGGTTGCCTGCTGGCGCGCGACGGTCGGTG 1 266 1 TGCTGGCGCG 0.663444 -35 GGCAAGGTATCGCTGCGGCGCGCATCGTCGCC 7 117 1 CGCTGGCGCG 0.585059 -40 ACGAACCGGCCAATGTTGAGCAACTCCGGCGC 8 38 0 CAATGGAGCA 0.872837 -170 TGAGTGTTGCCGAGGTCGGGGATATAGCGCGT 8 148 1 CGAGGGGGGA 0.710838 -60 AGCCTTGGCGAGGTGGACAGCAGCCCACACAT 9 157 1 AGGTGCAGCA 0.692188 -56 GATAGCGTCGCGGTGTGCCGCGGCGTCCGCGC 10 54 1 CGGTGCCGCG 0.595285 -171 CTCCACGAGTCGGGCACGAGCGACCGCGCGGA 10 79 0 CGGGCGAGCG 0.803541 -146 CGCATCGTGGCGGGTTTGAGGGCGCCGAGTCG 10 111 0 CGGGTGAGGG 0.892057 -114 AGGGCGTTTTCGATTGCGCGCATCGTGGCGGG 10 129 0 CGATTGCGCA 0.808459 -96 GTCGGGAGGCCGAGGATCAGGGTCAGGGCGTT 10 153 0 CGAGGCAGGG 0.953821 -72 TCCGCGACGATGCAGAGCGCAGCGATGCG 11 8 1 CGATGGAGCG 0.978217 -60 CAGAGCGCAGCGATGCGGTGGGGGTACCGCCC 11 23 1 CGATGGTGGG 0.833099 -45 CGCCCGCTTGCGGGGGAGAGCGGCGCCG 11 50 1 CGGGGGAGCG 0.915378 -18 GCGCCGGCGACGATGCAGAGCAAAGCGATGGG 13 32 1 CGATGGAGCA 0.982131 -142 AGCAAAGCGATGGGGAGGAGCGGCGCCAGTGA 13 50 1 TGGGGGAGCG 0.95954 -124 GGAGCGGCGCCAGTGACCCGCGCCGGCGACGA 13 66 1 CAGTGCCGCG 0.919757 -108 GCGCCGGCGACGATGCAGAGCAAAGCGATGGG 13 85 1 CGATGGAGCA 0.982131 -89 AGCAAAGCGATGGGGAGGAGCGGCGCCAGTGA 13 103 1 TGGGGGAGCG 0.95954 -71 GGAGCGGCGCCAGTGACCCGCGCCGGCGACGA 13 119 1 CAGTGCCGCG 0.919757 -55 GCGCCGGCGACGATGCAGAGCAAAGCGATGGG 13 138 1 CGATGGAGCA 0.982131 -36 AGCAAAGCGATGGGGAGGAGCGGCGCCA 13 156 1 TGGGGGAGCG 0.95954 -18 ***** ***** Masking position 10 Map Score: 44.7243 Number of sites scoring better than the average of aligned sites = 11428 Number in coding regions = 10575 Number in noncoding regions = 853 Number of orfs with sites within 600 bp upstream = 572 Fraction of orfs with sites within 600 bp upstream = 0.0918728 Motif number 4 CGAAGTCCCATGCCACTGTGCTGGCGCCGGT 1 44 0 TGCCACTTGC 0.304922 -257 GACAGCCACAGCCCTCGTGGCTGCAGGTCAG 1 85 1 GCCCTCGGGC 0.564217 -216 ACCGACAGCTGACCACCTGGGATTCCTCGGG 1 172 0 GACCACCGGG 0.536645 -129 TAAACCCCCAGGCCGGTGGGCGGTTGCCTGC 1 248 1 GGCCGGTGGC 0.934091 -53 GGTGGGCGGTTGCCTGCTGGCGCGCGACGGT 1 262 1 TGCCTGCGGC 0.850613 -39 CGCGACCACCGACCGTCGCGCGCCAGCAGGC 1 273 0 GACCGTCCGC 0.665366 -28 CGACCGGTAGGTTAGGACAGCC 3 2 1 GACCGGTGGT 0.912584 -107 CGGACCGTATGGCCGGGCCGCGC 5 3 0 GGCCGGGCGC 0.984555 -40 AGAGTGTCACAGCCGGACCGTATGGCCGGGC 5 16 0 AGCCGGACGT 0.724364 -27 GCACGCCGTATGCCGCTACGCAACCATTTCG 6 23 1 TGCCGCTCGC 0.95037 -39 CCTGTTAGGGTGCCGGTACGGGACCTAGTCT 7 63 0 TGCCGGTCGG 0.938615 -94 CCAACAGGTTGGCCGGGGGCCCTGTTAGGGT 7 83 0 GGCCGGGGCC 0.696648 -74 GCCCCCGGCCAACCTGTTGGTTGGGCAAGGT 7 94 1 AACCTGTGGT 0.219373 -63 GCGCATCGTCGCCCGGATAGGCTCGACCGCC 7 136 1 GCCCGGAAGG 0.308966 -21 GGGTGTTATGGGCCGCTCGGCGCGC 8 5 0 GGCCGCTGGC 0.987205 -203 GCTCAACATTGGCCGGTTCGTTACCGTCTTG 8 49 1 GGCCGGTCGT 0.974611 -159 GAACGGGTGGGGCCTCTAGGTTTCGGAGGGC 8 85 1 GGCCTCTGGT 0.808009 -123 ATAGACGGCAAGCCGGATTGCTATGCAACTA 9 20 1 AGCCGGATGC 0.69105 -193 CATACACGTCGACCACTTGGCACATGCGTCG 9 73 0 GACCACTGGC 0.719785 -140 GTCTTCCAGATACCGCTATGTGTGGGCTGCT 9 175 0 TACCGCTTGT 0.238407 -38 CGCGACAGGTGGCCGGAGTGGG 10 2 0 GGCCGGATGG 0.887724 -223 CTCCCGACGGGACCTGAGCGCGGCGAGGCGG 10 177 1 GACCTGACGC 0.82184 -48 GAGAATGGGTCGCCGCCTCGCCGCGCTCAGG 10 189 0 CGCCGCCCGC 0.966756 -36 GCGGTACCCCCACCGCATCGCTGCGCTCTGC 11 22 0 CACCGCACGC 0.822628 -46 TCTGCATCGTCGCCGGCGCGGGTCAATCGAA 13 20 0 CGCCGGCCGG 0.958078 -154 TCTGCATCGTCGCCGGCGCGGGTCACTGGCG 13 73 0 CGCCGGCCGG 0.958078 -101 TCTGCATCGTCGCCGGCGCGGGTCACTGGCG 13 126 0 CGCCGGCCGG 0.958078 -48 GCCCTGTAGGCTAACCTACCA 14 1 1 GCCCTGTGGC 0.833484 -47 ******* *** Masking position 4 Map Score: 38.0659 Number of sites scoring better than the average of aligned sites = 31552 Number in coding regions = 29454 Number in noncoding regions = 2098 Number of orfs with sites within 600 bp upstream = 1099 Fraction of orfs with sites within 600 bp upstream = 0.176518 Motif number 5 TGGCTGCAGGTCAGCAAGGTCCCAGCCTCG 1 102 1 TCAGCAAGGT 0.856478 -199 ACCTGTTGGTTGGGCAAGGTATCGCTGCGG 7 105 1 TGGGCAAGGT 0.877157 -52 ATCGCTGCGGCGCGCATCGTCGCCCGGATA 7 125 1 CGCGCATCGT 0.975729 -32 TCGACGTGTATGTGCAACGTCTAGTATCAG 9 92 1 TGTGCAACGT 0.984642 -121 TTTTCGATTGCGCGCATCGTGGCGGGTTTG 10 125 0 CGCGCATCGT 0.975729 -100 ATCGCTGCGCTCTGCATCGTCGCGGA 11 7 0 TCTGCATCGT 0.993438 -61 ATCGCTTTGCTCTGCATCGTCGCCGGCGCG 13 31 0 TCTGCATCGT 0.993438 -143 ATCGCTTTGCTCTGCATCGTCGCCGGCGCG 13 84 0 TCTGCATCGT 0.993438 -90 ATCGCTTTGCTCTGCATCGTCGCCGGCGCG 13 137 0 TCTGCATCGT 0.993438 -37 ********** Masking position 6 Map Score: 17.078 Number of sites scoring better than the average of aligned sites = 359 Number in coding regions = 264 Number in noncoding regions = 95 Number of orfs with sites within 600 bp upstream = 70 Fraction of orfs with sites within 600 bp upstream = 0.0112432 Motif number 6 GTCATTCGTATCACCCTCATCCGTGTCGGG 1 138 1 TCACCCTCAT 0.958126 -163 GGAAGGTCACCCCAATTCGTAGCACT 3 93 0 TCACCCCAAT 0.948646 -16 GGCGCCGCTCTCCCCCGCAAGCGGGCGGTA 11 47 0 TCCCCCGCAA 0.96118 -21 CTGGCGCCGCTCCTCCCCATCGCTTTGCTC 13 49 0 TCCTCCCCAT 0.99557 -125 CTGGCGCCGCTCCTCCCCATCGCTTTGCTC 13 102 0 TCCTCCCCAT 0.99557 -72 TGGCGCCGCTCCTCCCCATCGCTTTGCTC 13 155 0 TCCTCCCCAT 0.99557 -19 ********** Masking position 9 Map Score: 7.88079 Number of sites scoring better than the average of aligned sites = 32 Number in coding regions = 26 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 7 CCGGTGACGCCTACCGCTGCACCTGCGGCGACG 1 16 0 CTACGCTCAC 0.651036 -285 AGGGCTGTGGCTGTCGGGTTCGCATCGAAGTCC 1 67 0 CTGCGGGTCC 0.971151 -234 ACGCTAGCGCGACCACCGACCGTCGC 1 285 0 CTACGCGCCC 0.991927 -16 CAATTTGGATCTGCCGTGCCCTCGTAATCTCGA 4 33 1 CTGCGTGCCC 0.98641 -45 TACCGGCACCCTAACAGGGCCCCCGGCCAACCT 7 76 1 CTACAGGCCC 0.881383 -81 TGTGATCGAACGGGTGGGGCCTCTAGGTTTCGG 8 78 1 CGGTGGGCCC 0.940664 -130 CTCCGGCCACCTGTCGCGCCCTCAGAAGGTGTA 10 15 1 CTGCGCGCCC 0.998216 -210 TCGCGGTGTGCCGCGGCGTCCGCGCGGTCGCTC 10 61 1 CCGGGCGCCC 0.965633 -164 CCTCGGCCTCCCGACGGGACCTGAGCGCGGCGA 10 170 1 CCGCGGGCCG 0.955409 -55 CCCCCGCAAGCGGGCGGTACCCCCACCGCATCG 11 33 0 CGGCGGTCCC 0.971539 -35 GCGCGGGTCACTGGCGCCGCTCCTCCCCATCGC 13 56 0 CTGCGCCCTC 0.940238 -118 GCGCGGGTCACTGGCGCCGCTCCTCCCCATCGC 13 109 0 CTGCGCCCTC 0.940238 -65 *** **** ** * Masking position 1 Map Score: 16.9738 Number of sites scoring better than the average of aligned sites = 6538 Number in coding regions = 6211 Number in noncoding regions = 327 Number of orfs with sites within 600 bp upstream = 294 Fraction of orfs with sites within 600 bp upstream = 0.0472213 Motif number 8 CAGCAGGCAACCGCCCACCGGCCTGGGGGT 1 251 0 CCGCCCACCG 0.98805 -50 ACGCTAGCGCGACCACCGACCGTCGCGC 1 283 0 GCGACCACCG 0.981244 -18 CATACGGCGTGCGAACTCTGCTGC 6 5 0 GCGAACTCTG 0.643663 -57 CACCCTAACAGGGCCCCCGGCCAACCTGTT 7 82 1 GGGCCCCCGG 0.908519 -75 CCCATAACACCCGCGCGCCGGAGTTGCTCA 8 24 1 CCGCGCGCCG 0.578779 -184 AAAGCAAAATGGGCCCTCCGAAACCTAGAG 8 98 0 GGGCCCTCCG 0.988091 -110 CGCTATATCCCCGACCTCGGCAACACTCAA 8 147 0 CCGACCTCGG 0.895947 -61 ACATGCGTCGGCGTACACGGTCAATATGCA 9 53 0 GCGTACACGG 0.838372 -160 CCTCGCCAAGGCTTCCTCCGGGCCCTGCTG 9 140 0 GCTTCCTCCG 0.81687 -73 GCCACCTGTCGCGCCCTCAGAAGGTGTAGC 10 20 1 GCGCCCTCAG 0.988157 -205 GCGGACGCCGCGGCACACCGCGACGCTATC 10 54 0 CGGCACACCG 0.899026 -171 GAGCGACTCGGCGCCCTCAAACCCGCCACG 10 108 1 GCGCCCTCAA 0.835555 -117 CGCCGCCTCGCCGCGCTCAGGTCCCGTCGG 10 180 0 CCGCGCTCAG 0.914152 -45 CCGTCCACCGTACGGGAGAA 10 215 0 CCGTCCACCG 0.960408 -10 ********** Masking position 6 Map Score: 21.6797 Number of sites scoring better than the average of aligned sites = 6415 Number in coding regions = 5990 Number in noncoding regions = 425 Number of orfs with sites within 600 bp upstream = 362 Fraction of orfs with sites within 600 bp upstream = 0.0581433 Motif number 9 CGGGTATCTGGTAAACCCCCAGGCCGGTGG 1 237 1 GTAAACCCCC 0.906173 -64 GCGCCAGCAGGCAACCGCCCACCGGCCTGG 1 255 0 GCAACCGCCC 0.527103 -46 ACGCTAGCGCGACCACCGACCGTCGCG 1 284 0 CGCGACCACC 0.850169 -17 AAAGGCTGTCCTAACCTACCGGTCG 3 6 0 CTAACCTACC 0.840177 -103 GAAGAAGGATCCAAACCCCCTTTTGTGGAA 7 32 0 CCAAACCCCC 0.979874 -125 CGATACCTTGCCCAACCAACAGGTTGGCCG 7 99 0 CCCAACCAAC 0.788812 -58 CCCGGATAGGCTCGACCGCC 7 147 1 CTCGACCGCC 0.912603 -10 CTCGGCAACACTCAACCACCTACACAGCGA 8 132 0 CTCAACCACC 0.979612 -76 AGTCAACGCGCTATATCCCCGACCTCGGCA 8 155 0 CTATATCCCC 0.467674 -53 CTTCATCAGACCCAATCACCG 8 197 1 CCCAATCACC 0.878533 -11 TCGGCGCCCTCAAACCCGCCACGATGCGCG 10 115 1 CAAACCCGCC 0.800459 -110 GCCCTGTAGGCTAACCTACCAAGCACTTGC 14 11 1 CTAACCTACC 0.840177 -37 ********** Masking position 10 Map Score: 2.52348 Number of sites scoring better than the average of aligned sites = 4644 Number in coding regions = 4236 Number in noncoding regions = 408 Number of orfs with sites within 600 bp upstream = 349 Fraction of orfs with sites within 600 bp upstream = 0.0560553 Motif number 10 CCTCGTGGCTGCAGGTCAGCAAGGTCCCAG 1 97 1 GCAGGTCAGC 0.989424 -204 AGGAATCCCAGGTGGTCAGCTGTCGGTAAT 1 176 1 GGTGGTCAGC 0.928803 -125 CGACCGGTAGGTTAGGACAGCCTTTC 3 7 1 GTAGGTTAGG 0.961807 -102 GTCAGGATGAGCAGGTTATGCAGGGGTTCC 3 59 1 GCAGGTTATG 0.881856 -50 GGAAGGTCACCCCAATTCGTA 3 98 0 GAAGGTCACC 0.924048 -11 CAAGTGCTTGGTAGGTTAGCCTACAGGGC 14 10 0 GTAGGTTAGC 0.979664 -38 ********** Masking position 6 Map Score: 1.35666 Number of sites scoring better than the average of aligned sites = 629 Number in coding regions = 591 Number in noncoding regions = 38 Number of orfs with sites within 600 bp upstream = 43 Fraction of orfs with sites within 600 bp upstream = 0.00690652 Motif number 11 ********** No masking Map Score: 3.42725e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 3.42725e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 3.42725e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0