AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00260_mthe_reg_300.orf -o00260_mthe_300.ace -a/home/amcguire/genomes/ORF_mthe.txt -z/home/amcguire/genomes/mthe.fna -g0.50 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.5 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 MTH243 231 conserved protein #2 MTH248 195 conserved protein #3 MTH249 64 conserved protein #4 MTH250 23 tRNA intron endonuclease #5 MTH251 54 tryptophanyl-tRNA synthetase #6 MTH252 22 conserved protein #7 MTH253 75 threonine synthase #8 MTH413 300 conserved protein #9 MTH415 199 conserved protein #10 MTH800 52 dihydrodipicolinate reductase #11 MTH802 49 aspartokinase II alpha subunit #12 MTH804 40 chorismate mutase, subunit A #13 MTH805 240 conserved protein (homoserine kinase related) #14 MTH970 77 phosphoglycerate dehydrogenase #15 MTH1026 222 phosphatidylserine decarboxylase #16 MTH1027 39 CDP-diacylglycerol-serine O-phosphatidyltransferase #17 MTH1120 132 nifH / minD related protein #18 MTH1122 39 seryl-tRNA synthetase #19 MTH1231 40 conserved protein #20 MTH1232 25 homoserine dehydrogenase #21 MTH1380 167 serine hydroxymethyltransferase #22 MTH1381 151 heterodisulfide reductase, subunit A #23 MTH1383 52 DNA repair protein RadA #24 MTH1385 300 replication factor A related protein #25 MTH1454 160 conserved protein #26 MTH1455 192 threonyl-tRNA synthetase #27 MTH1627 220 TATA-binding transcription initiation factor #28 MTH1648 110 dihydrolipoamide dehydrogenase #29 MTH1850 105 fumarate reductase Motif number 1 CATGGGCCATCCCCTGGGCACAGCCTCTCGCCC 1 14 0 CCCTGGGACG 0.840028 -218 CAGGGGATGGCCCATGATTCCGGTTACATGTGT 1 31 1 CCCTGATCCG 0.985453 -201 AGTTTATCACCCCGGCATTACAGGCAAAGAATC 1 77 1 CCCGCATACG 0.928005 -155 TCACACTCTCCCCTGGATTATAGGTAACCTATG 1 208 0 CCCGGATATG 0.903005 -24 GGCCCCGGGTCCCGTGATGCCCGGGAGGCCTTC 2 59 1 CCCTGATCCG 0.985453 -137 CGGAATATTCCCCAGGAACACGGAAGGCCTCCC 2 81 0 CCCGGAAACG 0.97359 -115 AGATAGAGTTCCCTGGAAAACCAGCACCCCTCC 2 116 0 CCCGGAAACA 0.691743 -80 AAGGGGTCTTCCATGGATGACTGCAGCGA 3 7 0 CCAGGATACG 0.896874 -58 ACCTCCCGTGAGTGCTGGTTGAG 4 7 0 CCCTGAGGCG 0.896215 -17 GTCTTTATATCCCCTGAGAACCCTTAAATTTGT 8 69 0 CCCTGAGACC 0.873015 -232 GCCAGTTTTCGACAGGATCCCGGCCCAGGTTTT 8 146 1 GACGGATCCG 0.75187 -155 GGGATCACCCCCCTTGATTCCGGGTTAAATTTA 8 241 1 CCCTGATCCG 0.985453 -60 CATCCTGTCACACAGGATCCATGTTCCCTCTGC 9 28 1 CACGGATCAG 0.686377 -172 TAGTTATTCTCACAGGATCACAGGAGGATTATT 17 12 0 CACGGATACG 0.972719 -121 CCCATATGTTCACTGGATAACTGTCTTTCGCCT 24 113 1 CACGGATACG 0.972719 -188 CTCGTTATATCCCTGGAGTCCCCTCCCCATCTA 25 132 0 CCCGGAGCCC 0.951575 -29 *** **** ** * Masking position 7 Map Score: 20.2015 Number of sites scoring better than the average of aligned sites = 513 Number in coding regions = 477 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 2 ATGGTACTTACAATATTTATTTACCATCAG 1 162 1 CAATATTTAT 0.948246 -70 CCTATGGCAACAATATTTATCGCTGATGGT 1 184 0 CAATATTTAT 0.948246 -48 GTCTCTGTGGCAAGGTTTATATCATTGTAG 9 96 1 CAAGGTTTAT 0.796365 -104 TATCTAAGTGCAATATTTATATAGTGGTAG 13 115 0 CAATATTTAT 0.948246 -126 TCATTCTATAAAATCTTCATTGTGATAAGT 14 47 1 AAATCTTCAT 0.674268 -31 ACTCCATGTGAAATGTTCATGTCACCGTGA 15 130 1 AAATGTTCAT 0.750948 -93 CTGTCCAAGACAATATTTATTAATGGTTAC 17 61 0 CAATATTTAT 0.948246 -72 ATGAAAAGATTTATAGTCACATCA 19 5 1 AAAGATTTAT 0.845858 -36 TATATTAAATAAATGTTTATTCTGTGTGTA 22 26 0 AAATGTTTAT 0.867587 -126 TTTTTGATAGAAATATTTATTTAGCACTGT 22 105 1 AAATATTTAT 0.928462 -47 TTAAATCTTTAAATATTCATTAAGCATGGA 23 22 0 AAATATTCAT 0.856586 -31 ATGAATATTTAAAGATTTAAGGGAGATTAA 23 32 1 AAAGATTTAA 0.487809 -21 TCCACCGGAGCAATATTTAAAAACCCTCAC 26 131 1 CAATATTTAA 0.76076 -62 TTTTTTACGTCAATATTAATATAGGTGCAT 27 159 1 CAATATTAAT 0.679714 -62 TGTTTCCCACAAATCTTTATATGTGACGGA 28 72 0 AAATCTTTAT 0.818122 -39 ********** Masking position 3 Map Score: 14.231 Number of sites scoring better than the average of aligned sites = 49 Number in coding regions = 25 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 3 CGTTTAATTTCCCTGGTTAATTCAGGTACATATTGATA 7 15 1 CCGTTCAGGA 0.993807 -61 TTGATGGATACTCTGAATTATTCATGTAACTCCACCAT 8 11 0 CCGTTCATGA 0.993294 -290 AGGATCCCGGCCCAGGTTTTTACAGGCGCATATCTGTA 8 159 1 CCGTTCAGGG 0.990442 -142 TGTCTTTCTCCTCAGGTTCATGCAGGGATCACCCCCCT 8 217 1 CCGTTCAGGA 0.993791 -84 GTGTTCATATCGCTGTGAACTCCATGTGAAATGTTCAT 15 112 1 CCGATCATGG 0.97946 -111 ATGTTCATGTCACCGTGAACTCCATGTGAGAAGAAACC 15 142 1 CCGATCATGG 0.978832 -81 CCCTGCTAATTATATGTATCCTTATATT 17 115 0 CCGATTATGA 0.920603 -18 TTACACTTTCCTCAGTTTTTTTCAGGTATATTAAATAA 22 44 0 CCGTTCAGGA 0.993807 -108 CTCTAATTTTCACAGACTGCCCCATGGACCACTTGCTG 24 54 0 CCGTCCATGA 0.968644 -247 CTCCGGATCATATATGTAGTCACATACC 25 1 1 CCGTTTATGA 0.962399 -160 * * * * * **** * Masking position 14 Map Score: 15.7666 Number of sites scoring better than the average of aligned sites = 77 Number in coding regions = 66 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 4 AGGCTGTGCCCAGGGGATGGCCCATGATTC 1 21 1 CAGGGGATGG 0.958956 -211 GCCTGTAATGCCGGGGTGATAAACTGATAA 1 72 0 CCGGGGTGAT 0.687299 -160 ACCTATAATCCAGGGGAGAGTGTGAC 1 216 1 CAGGGGAGAG 0.971809 -16 CCTGACCCTCCAGGGGAAATCCTTCAGGGC 2 160 0 CAGGGGAAAT 0.904021 -36 AACCAGCACTCACGGGAGGT 4 14 1 CACGGGAGGT 0.727165 -10 TGACTTAATAACGGTGATATGA 5 43 1 ACGGTGATAT 0.659403 -12 CCTGAATTAACCAGGGAAATTAAACGGGGT 7 11 0 CCAGGGAAAT 0.619832 -65 TAAGGGTTCTCAGGGGATATAAAGACCTCC 8 76 1 CAGGGGATAT 0.917984 -225 TTATCTATTACCGGGGAGGGGTAATAAATT 8 268 0 CCGGGGAGGG 0.984645 -33 TAATAGATAAACGGTGATATAAT 8 288 1 ACGGTGATAT 0.659403 -13 GAATGGAAGAAAGGGGAATGTAATTT 12 25 1 AAGGGGAATG 0.499141 -16 ATGTGATATGCCGGTGAAAGATATATATAC 15 64 0 CCGGTGAAAG 0.88988 -159 GTAATGGGAACAGGTGAGTTATTTGTTTGT 15 198 1 CAGGTGAGTT 0.728029 -25 TATTATTAATCAAGTGAGGGACCAAA 24 285 1 CAAGTGAGGG 0.75048 -16 TAACAGATAGATGGGGAGGGGACTCCAGGG 25 125 1 ATGGGGAGGG 0.648297 -36 GGAGGGGACTCCAGGGATATAACGAGTGAG 25 139 1 CCAGGGATAT 0.65957 -22 TATTGTTTTTAAGGTGAGGGTTTTTAAATA 26 144 0 AAGGTGAGGG 0.868475 -49 TATTCTTACCAAGGTGATGGC 26 182 1 AAGGTGATGG 0.757167 -11 TAGATACCTCCCGGTGAAGTTAAACCTACA 27 200 0 CCGGTGAAGT 0.888582 -21 ********** Masking position 6 Map Score: 14.6011 Number of sites scoring better than the average of aligned sites = 1528 Number in coding regions = 1455 Number in noncoding regions = 73 Number of orfs with sites within 600 bp upstream = 67 Fraction of orfs with sites within 600 bp upstream = 0.0107613 Motif number 5 GGGACCCGGGGCCCCTCAAGGTATAATATTCC 2 40 0 GCCTCAAGGT 0.93869 -156 GGAACACGGAAGGCCTCCCGGGCATCACGGGA 2 68 0 ACCTCCCGGG 0.988358 -128 GAAAACCAGCACCCCTCCAGCGGAATATTCCC 2 102 0 ACCTCCAGCG 0.973333 -94 CTCCAGGGGAAATCCTTCAGGGCGCTGACACC 2 151 0 ACCTTCAGGG 0.941858 -45 CTCAAACCCTGACCCTCCAGGGGAAATCCTTC 2 165 0 GCCTCCAGGG 0.995157 -31 CTCAACCAGCACTCACGGGAGGT 4 8 1 AACTCACGGG 0.718795 -16 AAGACCTCCAGAACCCACAGGGGCCTCATCAC 8 97 1 GCCCACAGGG 0.81058 -204 TAAATTTATTACCCCTCCCCGGTAATAGATAA 8 266 1 ACCTCCCCGG 0.884517 -35 ATCAGTGCCAGTTCCTCCAGGACCATCATGAG 10 15 0 GCCTCCAGGA 0.947233 -38 ACTCCAGAGAGCACCTCAAGCTCTCAAACACT 13 171 0 GCCTCAAGCT 0.813596 -70 CGGATTCGGAATCCCCCCAGCTATCAACACGC 21 71 1 ACCCCCAGCT 0.7528 -97 AGATGGGGAGGGGACTCCAGGGATATAACGAG 25 133 1 GACTCCAGGG 0.959781 -28 TTCAGATGATGACCCTTAAGGGATCTCCTGAA 26 79 0 GCCTTAAGGG 0.870789 -114 CTAGATACCTCCCGGTGAAGTTAAAC 27 205 0 ACCTCCCGGT 0.960634 -16 * ********* Masking position 5 Map Score: 15.332 Number of sites scoring better than the average of aligned sites = 1169 Number in coding regions = 1127 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 6 CACCGGTCAGTATAGAATCTGATTTTTTTTCTC 1 129 1 TATAGTTGAT 0.758455 -103 CCGGTAAGAATAAAGTTTCTGATTCACCTTATC 7 49 0 TAAAGTTGAT 0.964425 -27 ATTTGTGTTCAGAGGGCTGTGGTTCCTTGATGG 8 42 0 AGAGGTTGGT 0.559395 -259 GTGAAACACATAAAGTCTATGGTGCTGCAGTGA 9 147 0 TAAAGTTGGT 0.895449 -53 CATCAAGTTGAGAGGAGTCTGAT 9 187 1 AGAGGTTGAT 0.800743 -13 GGCACTGATCTAGGGGGTGTGATGC 10 38 1 TAGGGTTGAT 0.77362 -15 TCCAACATTTAAAAGGTTGTGAAGGTTA 11 32 1 AAAAGTTGAA 0.648315 -18 GACTGGAGGTAAAAAGGTCTGATACC 13 4 0 AAAAATTGAT 0.554157 -237 AGAAAAAGGATAAAGGATTTGATGGGGTTAACC 21 14 0 TAAAGTTGAT 0.964425 -154 AAACCTTACTTAAAGTTTTTGATAGAAATATTT 22 90 1 TAAAGTTGAT 0.964425 -62 CCCGGCCCTATAAATACTTTGATAATAAGATTT 24 188 1 TAAATTTGAT 0.660461 -113 TTAAAATATGAAAAGAGTTTGATGATAGGCCGC 27 60 1 AAAAGTTGAT 0.945423 -161 CAACACATATTAAGGTTTGTGATTTTAACTGAT 29 34 0 TAAGGTTGAT 0.952168 -72 ***** * **** Masking position 8 Map Score: 7.45653 Number of sites scoring better than the average of aligned sites = 72 Number in coding regions = 51 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 7 GTACTTACAATATTTATTTACCATCAGCGA 1 165 1 TATTTATTTA 0.703487 -67 TAATTCAGAGTATCCATCAAGGAACCACAG 8 29 1 TATCCATCAA 0.862254 -272 GTTTCACATGTATCCATCAAGTTGAGAGGA 9 173 1 TATCCATCAA 0.862254 -27 CTGCAAAGTGTATTCATCAATTAAATAGTA 13 143 0 TATTCATCAA 0.918013 -98 TCCAAGACAATATTTATTAATGGTTACCGA 17 58 0 TATTTATTAA 0.895123 -75 ATTTTCAGGTTATCTATTAACTCTTTGCTG 17 88 0 TATCTATTAA 0.826734 -45 GATCACCGTTTATTTATTCACACCTAATTT 18 18 0 TATTTATTCA 0.785863 -22 TTGATAGAAATATTTATTTAGCACTGTGGT 22 108 1 TATTTATTTA 0.703487 -44 AATCTTTAAATATTCATTAAGCATGGATCG 23 19 0 TATTCATTAA 0.931558 -34 GGCGTGATATTATTAATCAAGTGAGGGACC 24 278 1 TATTAATCAA 0.753361 -23 CATCCCCCTCTATTCATTAAGTATGTTAAA 27 13 1 TATTCATTAA 0.931558 -208 GGTATTAATTCAATGGCATTGT 28 99 0 TATTAATTCA 0.614868 -12 ********** Masking position 6 Map Score: 7.31595 Number of sites scoring better than the average of aligned sites = 56 Number in coding regions = 33 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 8 GGGATATAAAGACCTCCAGAACCCACAGGGG 8 89 1 GACTCCAGAA 0.973186 -212 TAACCTTCACAACCTTTTAAAT 11 38 0 AACTTCACAA 0.760855 -12 GATATAACAAAAACTCCTGAAAACATGACTG 13 32 0 AACTCCTGAA 0.958127 -209 GATTACATTTAATCTTCAGTACATGAGTATA 15 38 1 AACTTCAGTA 0.775373 -185 ACCATATGATGAACCTCAGAATGTGATATGC 15 83 0 GACCTCAGAA 0.868188 -140 GAGCCTCTTTAACCTTCTGATGTCCCCATAT 24 89 1 AACTTCTGAT 0.736964 -212 AAGACTTGGTGAGCTCCTGAAAACTAATAAG 24 237 0 GACTCCTGAA 0.967169 -64 ACCCTTAAGGGATCTCCTGAACCTCTTCAAT 26 69 0 GACTCCTGAA 0.967169 -124 CTCATATGAAAAACTTCAGAATGAACTGAAT 29 80 0 AACTTCAGAA 0.956326 -26 ** ******** Masking position 2 Map Score: 4.38765 Number of sites scoring better than the average of aligned sites = 130 Number in coding regions = 118 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 9 TGTAAGTACCATGAGAAAAAAAATCAGATT 1 144 0 ATGAGAAAAA 0.684377 -88 TTTACCGGTAAGAATAAAGTTTCTGAT 7 59 0 GTAAGAATAA 0.836306 -17 ACCTGTCACAGAGAGAAAAAACATGGCCTC 9 68 0 GAGAGAAAAA 0.872255 -132 CCTTTTAAATGTTGGAAAAAATGAAAAAAA 11 18 0 GTTGGAAAAA 0.652889 -32 TTTATAGAATGATAGAAGAATCTATAGAGG 14 29 0 GATAGAAGAA 0.600936 -49 TGAACTCCATGTGAGAAGAAACCTATCAGA 15 157 1 GTGAGAAGAA 0.948765 -66 CTGTGATCCTGTGAGAATAACTATGAAATG 17 22 1 GTGAGAATAA 0.957149 -111 TTGAAATTAGGTGTGAATAAATAAACGGTG 18 15 1 GTGTGAATAA 0.758628 -25 TATTATGTAAGTTAGAAAAAGGATAAAGGA 21 30 0 GTTAGAAAAA 0.900191 -138 TACTGAAATAGTGACAAAAATTATATATAA 25 88 0 GTGACAAAAA 0.762681 -73 CATCACCTTGGTAAGAATAACTAATGTTAT 26 171 0 GTAAGAATAA 0.836306 -22 ********** Masking position 6 Map Score: 4.58575 Number of sites scoring better than the average of aligned sites = 104 Number in coding regions = 77 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 10 TCCCCTGAGAACCCTTAAATTTGTGTTCAG 8 63 0 ACCCTTAAAT 0.975496 -238 CGATAGACTAAGCCTTATATCACTGCAGCA 9 128 1 AGCCTTATAT 0.831039 -72 CTCCAGTGACCCTTGAATGGAAGAAAGG 12 9 1 ACCCTTGAAT 0.935716 -32 AATTATATGTATCCTTATATTTTCAGGTTA 17 106 0 ATCCTTATAT 0.854053 -27 TTTAATCTCCCTTAAATCTTTAAATAT 23 36 0 TCCCTTAAAT 0.892063 -17 ACCTTTATGAACCCTTCAATTATTCTGCTA 24 22 0 ACCCTTCAAT 0.935716 -279 TTTAAGCACCATCCTTAAATAATTTAACAT 27 35 0 ATCCTTAAAT 0.930803 -186 ********** Masking position 9 Map Score: 2.43852 Number of sites scoring better than the average of aligned sites = 41 Number in coding regions = 34 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 11 GGCGAGAGGCTGTGCCCAGGGGATGGCCCATG 1 15 1 TGTCCCAGGG 0.957722 -217 CCCTTAAATTTGTGTTCAGAGGGCTGTGGTTC 8 50 0 TGTTTCAGGG 0.986795 -251 CAAATTTAAGGGTTCTCAGGGGATATAAAGAC 8 70 1 GGTCTCAGGG 0.948419 -231 GGCGCATATCTGTATGCAGAGGGTTTGAATTC 8 183 1 TGTTGCAGGG 0.984113 -118 CCCATGTCTGCAGTGGTCATCCTGTC 9 5 1 TGTTGCAGGG 0.984111 -195 CCTCCAGTCATGTTTTCAGGAGTTTTTGTTAT 13 28 1 TGTTTCAGAG 0.95324 -213 ATAACTTATTAGTTTTCAGGAGCTCACCAAGT 24 233 1 AGTTTCAGAG 0.834142 -68 *** ***** ** Masking position 8 Map Score: 3.96577 Number of sites scoring better than the average of aligned sites = 56 Number in coding regions = 51 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 12 TTGAGGGGCCCCGGGTCCCGTGATGCCCGGGA 2 53 1 CCGGTCCGTG 0.930158 -143 AATTTGTGTTCAGAGGGCTGTGGTTCCTTGAT 8 44 0 CAGAGCTGTG 0.846621 -257 ATTCTGTGATGAGGCCCCTGTGGGTTCTGGAG 8 102 0 GAGGCCTGTG 0.954278 -199 GCCTTCAATCCATGATTCTGTGATGAGGCCCC 8 116 0 CATGTCTGTG 0.966156 -185 CTCTCTGTGACAGGTCTCTGTGGCAAGGTTTA 9 83 1 CAGGCCTGTG 0.993078 -117 TCCAGGATTCTATGATCGTTCACT 13 227 0 CAGGTCTATG 0.84616 -14 ATATGGTGTTCATATCGCTGTGAACTCCATGT 15 107 1 CATACCTGTG 0.933099 -116 GTGAAATGTTCATGTCACCGTGAACTCCATGT 15 137 1 CATGCCCGTG 0.970808 -86 ATGGAAATGTCCTGTCTCTGCGATTGAAAGGA 26 13 0 CCTGCCTGCG 0.893049 -180 **** * ***** Masking position 8 Map Score: 2.78443 Number of sites scoring better than the average of aligned sites = 241 Number in coding regions = 226 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 13 AAAGTCACAGCAAAATACACACAGAATAAA 22 11 1 CAAAATACAC 0.867941 -141 AAAATACACACAGAATAAACATTTATTTAA 22 22 1 CAGAATAAAC 0.956847 -130 TCAATCAGCACAGAATGTACCTCATTGAAG 26 46 1 CAGAATGTAC 0.931386 -147 GGATTAAAGTCAGAATACACTAATGTTTAG 28 35 1 CAGAATACAC 0.971669 -76 TGAAAAACTTCAGAATGAACTGAATTTTAA 29 75 0 CAGAATGAAC 0.959898 -31 ********** Masking position 5 Map Score: 0.543595 Number of sites scoring better than the average of aligned sites = 25 Number in coding regions = 16 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 14 CCATGTTCCCTCTGCTGAATCTGAGGCCATGTTT 9 46 1 TCCTGAATTA 0.977449 -154 ATCAGACTCCTCTCAACTTGATGGATACATG 9 179 0 TCCTCAACTA 0.860623 -21 TATATACTCATGTACTGAAGATTAAATGTAATCC 15 37 0 TGCTGAAGTA 0.84865 -186 ATACCTTACATCAACTGACTATCA 22 138 1 TCCTGACTTA 0.95494 -14 ACTGAAAAACTCGTCTGAATTTTACATCTATATT 24 150 1 TCCTGAATTA 0.977456 -151 CCTTAAGGGATCTCCTGAACCTCTTCAATGAGGT 26 64 0 TCCTGAACTT 0.870125 -129 TTAAGGGTCATCATCTGAACATTACTAGGGGTTT 26 92 1 TCCTGAACTA 0.976979 -101 AACATTAGTGTATTCTGACTTTAATCCTATTAAT 28 28 0 TACTGACTTA 0.733269 -83 AACTTCAGAATGAACTGAATTTTAATTGTTTATC 29 66 0 TGCTGAATTA 0.938771 -40 ** ****** * * Masking position 8 Map Score: 2.40714 Number of sites scoring better than the average of aligned sites = 35 Number in coding regions = 26 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 15 ********** No masking Map Score: -6.43509e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0