AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00340_mthe_reg_300.orf -o00340_mthe_300.ace -a/home/amcguire/genomes/ORF_mthe.txt -z/home/amcguire/genomes/mthe.fna -g0.50 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.5 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 MTH119 43 ATP phosphoribosyltransferase related protein #2 MTH120 21 NADPH-oxidoreductase #3 MTH225 300 histidinol dehydrogenase #4 MTH243 231 conserved protein #5 MTH669 145 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase related protein #6 MTH672 200 unknown #7 MTH673 149 magnesium chelatase subunit #8 MTH674 300 unknown #9 MTH1192 76 conserved protein #10 MTH1193 146 transcriptional regulator #11 MTH1194 35 acetylpolyamine aminohydolase #12 MTH1343 218 imidazoleglycerol-phosphate synthase (cyclase) #13 MTH1345 79 conserved protein #14 MTH1348 139 precorrin-2 methyltransferase #15 MTH1468 35 ferredoxin #16 MTH1469 57 molybdenum transport ATP-binding protein homolog #17 MTH1470 44 molybdenum transport protein ModA related protein #18 MTH1471 56 O-antigen transporter homolog #19 MTH1472 30 O-antigen transporter homolog #20 MTH1475 56 unknown #21 MTH1476 127 tryptophan synthase, beta subunit homolog #22 MTH1506 189 ATP phosphoribosyltransferase #23 MTH1514 125 precorrin-6Y methylase #24 MTH1522 116 nitrogenase alpha chain (NifD) related protein #25 MTH1587 31 histidinol-phosphate aminotransferase #26 MTH1591 30 phosphonopyruvate decarboxylase #27 MTH1592 21 conserved protein #28 MTH1593 205 ribosomal protein S3a #29 MTH1594 72 conserved protein #30 MTH1598 300 conserved protein Motif number 1 CCATTAGATGCCCCCTAATCCAAATTAAGG 3 69 1 CCCCCTAATC 0.820828 -232 TTGGAATTCATCCCATGGATATGACTACCA 3 130 0 TCCCATGGAT 0.856551 -171 ATCCGGTGTGCCCCCTAAATTCTTAAAAGG 3 233 1 CCCCCTAAAT 0.959362 -68 TCATGGGCCATCCCCTGGGCACAGCCTCTC 4 18 0 TCCCCTGGGC 0.875407 -214 GTCACACTCTCCCCTGGATTATAGGTAAC 4 213 0 TCCCCTGGAT 0.958404 -19 CATGGGGAAACCCCATGAACTGATTGCTGG 8 135 0 CCCCATGAAC 0.92052 -166 CATGGGGTTTCCCCATGAATTCCCTCTTTC 8 148 1 CCCCATGAAT 0.950398 -153 ATTATTTATCCCCTGAATCAGAAAATGA 11 9 1 TCCCCTGAAT 0.965581 -27 GGGTTCAAATCCCCCCGGGTCCGCTTTTTT 12 26 0 CCCCCCGGGT 0.795332 -193 AGACTACGGGCCCCCTACACACATCTCTAT 12 96 1 CCCCCTACAC 0.728795 -123 CTGTCTGCTGTCCCCTGAGTCTGGTCTTCG 12 168 0 TCCCCTGAGT 0.934045 -51 ATACTAAATGCCCCTTAATTAATAAAT 12 202 1 CCCCTTAATT 0.512921 -17 ATAGTTCCACCCCCTTAAATAGGTCC 14 7 0 CCCCTTAAAT 0.766358 -133 TGCAAATCCATCCCATGATTCATATCCATG 24 47 0 TCCCATGATT 0.700132 -70 TCAACCTCCTCCCCCTGGAGGAGGCCAGTG 29 22 0 CCCCCTGGAG 0.912154 -51 GATAGAGAACCCCCCTCAATAACTCAGTGT 30 226 1 CCCCCTCAAT 0.89618 -75 ********** Masking position 4 Map Score: 15.1649 Number of sites scoring better than the average of aligned sites = 758 Number in coding regions = 700 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 2 GACCACAGATTAATATAAAAATTGCAAATGGTA 3 102 1 TATATAAATT 0.817186 -199 AGAATTCCAGTAATATAAACATTTATTTATATG 3 185 0 TATATAAATT 0.817187 -116 AAAGTTAATGTGATATTTAAGTTTTTTCAAAAG 6 32 0 TATATTTATT 0.683567 -169 TTCAAATAAATTTTATTTAAATTAAAGTTAATG 6 55 0 TTTATTTATT 0.850046 -146 TTGTGATAATTAGTATATAAATTAAATTATTAC 6 162 0 TGTATATATT 0.61517 -39 TTTTTTCTCTTTTTATTAACATTTGGTATTACG 7 18 1 TTTATTAATT 0.929287 -132 TATTAACATTTGGTATTACGTTTTCTTGATACA 7 31 1 TGTATTACTT 0.601605 -119 TATAAATTATTGTTATTACTATTTTGAGGCAAT 7 112 0 TTTATTACTT 0.826983 -38 AGCAGATGGTTATTATTAATTTTAAAATAGAAA 8 32 1 TTTATTAATT 0.929287 -269 GAATGGTGTTTGATATTAAATTTTCCCTCCAGC 8 107 1 TATATTAATT 0.833555 -194 TTAACAAAAGCATTATATATCTTATTACTCCAA 8 225 1 CTTATATATT 0.541474 -76 CTGCTCGAGATATTATTAACTTTGTAGCGATTT 9 19 1 TTTATTAATT 0.929287 -58 GGGGATGTTCCCTTATAAATGTTTATCTGAAGA 10 38 0 CTTATAAATT 0.732452 -109 ACATCCCCTATCTTATAAAAGTTGATGACTTCT 10 63 1 TTTATAAATT 0.921446 -84 ATGAAAGTTATATTATAAAGTTTTTTAAGTGAA 10 108 0 TTTATAAATT 0.921446 -39 TATAAAGATATATTATTACATTTTTTTGTTGAT 13 53 1 TTTATTACTT 0.826983 -27 ACTCCAAACCTATTATATAGGTTTCCTGAAAGA 22 62 1 TTTATATATT 0.834979 -128 * ******* ** Masking position 6 Map Score: 13.5062 Number of sites scoring better than the average of aligned sites = 79 Number in coding regions = 30 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 3 GAGTCCTAAATCCCTTCCGGAGC 1 2 0 TCCCTCGGAG 0.990983 -42 TCAATCAACCATCATACTGGAG 1 32 1 ATCATCGGAG 0.929781 -12 ATTACCATCAGGGAGAATGACAGCA 8 4 1 ACCATAGGAG 0.803922 -297 AATATCAAACACCATTCTGGTGTTACATGTTA 8 92 0 ACCATCGGTG 0.974419 -209 TACTGATTTTTTTCTCCCGGAGCCATCCAGAA 20 32 1 TTTCTCGGAG 0.730514 -25 CTGGAACTGGTCCCTACTGATGAAATCATCAT 21 94 0 TCCCTCGATG 0.939135 -34 AGAATGATAGATCCTGCAGATGAACGGATAAA 22 117 1 ATCCTCGATG 0.812987 -73 GAACGGATAAACCCTGCAGGAGCTTAATGTAA 22 138 1 ACCCTCGGAG 0.989042 -52 TATAGAGTATTCCATACTGGCGGTGTATGTAA 28 93 1 TCCATCGGCG 0.944932 -113 GGTCTCCCTCCCGGTGTGCAGCAGGT 30 285 0 TCCCTCGGTG 0.98892 -16 ***** * **** Masking position 5 Map Score: 8.58465 Number of sites scoring better than the average of aligned sites = 363 Number in coding regions = 341 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 4 TTTATATTAATCTGTGGTCATTCCTTAATTT 3 90 0 TCTGTGGCAT 0.985315 -211 AGCAGTACTTGCTGTGGAAATAAGTGAAAGG 5 18 0 GCTGTGGAAT 0.924391 -128 TTATTACTATTTTGAGGCAATCGAAAAATAG 7 102 0 TTTGAGGAAT 0.782742 -48 TCATTATTTTTCTGTGGCACTCTCTAAACTT 14 39 0 TCTGTGGACT 0.858276 -101 TGGTCATCCTTCTCTGGAAATATCCAGACCC 14 80 0 TCTCTGGAAT 0.924501 -60 ACATGATGATGGTCTGGTCATCCTTCTCTGG 14 94 0 GGTCTGGCAT 0.781716 -46 CTTTAATAACTCTGTAGACATGATGATGGTC 14 111 0 TCTGTAGCAT 0.828009 -29 CCGTGGAGCATTTCAGGGCATATACCGC 18 39 1 TTTCAGGCAT 0.70402 -18 ACCTCAAATGTCTGTGGTTATGCAACATGGC 24 88 0 TCTGTGGTAT 0.896939 -29 TTTGGGGTGCTGTGTGGTCATGAATATGAAC 28 26 0 TGTGTGGCAT 0.967499 -180 TTGTGGTGGATGTGAGGTCATGTTTAATCAT 30 50 0 TGTGAGGCAT 0.939171 -251 TTATGCACAGTCTGAGGAAATCAAACAGTAT 30 107 0 TCTGAGGAAT 0.948177 -194 ******* *** Masking position 3 Map Score: 8.61975 Number of sites scoring better than the average of aligned sites = 235 Number in coding regions = 216 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 5 CCTCCAGTGAAAAAGTTAGGGCGAATGGT 3 282 0 TCCAGAGTAG 0.849911 -19 CATGTGTTTTTCCAGTTATCAGTTTATCACCCCGGCA 4 57 1 TCCAGATTAT 0.986134 -175 GAGATCCGGATCCAGATAATAATTCATTCAAATAAAT 6 77 0 TCCAGATTAT 0.986134 -124 AAATTTTCCCTCCAGCAATCAGTTCATGGGGTTTCCC 8 124 1 TCCAGATTAT 0.986134 -177 TTTTCCCATCTTCAGATAAACATTTATAAGGGAACAT 10 30 1 TTCAGATTAT 0.824077 -117 TCTGGAAATATCCAGACCCGCCTTTATTATCATTATT 14 62 0 TCCAGCTTAT 0.972902 -78 AGGGACCAGTTCCAGCCATGAGGTGAT 21 111 1 TCCAGAGTAT 0.972901 -17 AATAAATTTAACCAGTCATCGAGGGATTTA 22 170 1 ACCAGAGGAT 0.698493 -20 ATGATTCATATCCATGGATTGATTAATATTCATTTAG 24 26 0 TCCATATTAT 0.940119 -91 ATGATGCAAATCCATCCCATGATTCATATCCATGGAT 24 44 0 TCCATCTTAT 0.887962 -73 ATCATGGTTAACCAGTTAAATATGAATTTTTTGAATT 28 131 1 ACCAGATGAT 0.82108 -75 CCGAGACGTCTCCATATACTGTTTGATTTCCTCAGAC 30 92 1 TCCATATTAT 0.940118 -209 AATAATCCACTCCACTACCATGTTCATGTGGAGATTA 30 136 1 TCCACCTTAT 0.822977 -165 ***** * ** ** Masking position 4 Map Score: 11.2892 Number of sites scoring better than the average of aligned sites = 123 Number in coding regions = 102 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 6 TTTAAGTGAAAGCATATAAATAAATGTTTATATTACT 3 173 1 ATAAAAAAGT 0.898611 -128 ATAGGGGTCTACAATAAAAAGAGCAGTACTTGCTGTG 5 33 0 ATAAAAAGGT 0.92599 -113 AATAGCAGGGATCTAAAAAATAGGGGTCTACAATAAA 5 52 0 AAAAAAAGGT 0.916709 -94 AGTTTTTTCAAAAGAAAAAATAATTGGGGAAGGGG 6 9 0 AAAAAAAAGG 0.916709 -192 GTTAATAAAAAGAGAAAAAATTGGGGT 7 1 0 AAAAAATGGT 0.763093 -149 TATTGTGAAGACAATATAAATTATTGTTATTACTATT 7 122 0 ATAAAATAGT 0.721147 -28 TGAAGATGGGAAAATAAAAAAGGAGGGTAATTA 10 7 0 ATAAAAGGGG 0.751991 -140 TAAAAAGCAGTTAATAAAAAAGCGGACCCGGGGGG 12 9 1 AAAAAAAAGG 0.916709 -210 TAAATGGTTAACTTTAAATAGAGATGTGTGTAGGGGG 12 106 0 ATAATAAGGT 0.533878 -113 ATTAGTTAACACGAAACAAATTAGAGGGAG 13 4 0 AAAAAATAGG 0.763092 -76 TTAAATCAACAAAAAAATGTAATAATATAT 13 60 0 AAAAAAAAGT 0.886318 -20 TGATGGCATAAAGATATAAAGAACCGGCGCCATAGGT 17 12 1 ATAAAAAAGG 0.92599 -33 TGGCTCCGGGAGAAAAAAATCAGTAGGGGTGAGGTGG 20 20 0 AAAAATAGGG 0.729475 -37 TAGTGCCGGGATATTATAATAAAATGTTGGTATGGGA 23 20 1 ATAAATAAGT 0.606015 -106 AATCTTTAACACCGTAAAAACAGCTGGATTTAACATA 28 168 0 ATAAAAAGGG 0.946417 -38 * ** *** ** ** Masking position 8 Map Score: 8.73903 Number of sites scoring better than the average of aligned sites = 95 Number in coding regions = 54 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 7 AAACTTATTATTTAAAAATTTTGGTCCATTA 3 44 1 TTTAAAATTT 0.923151 -257 CACCGGATCATTTAATAATTTGAAGAATTCC 3 210 0 TTTAAAATTT 0.923151 -91 GCCATTCCCTTTTAAGAATTTAGGGGGCACA 3 239 0 TTTAAAATTT 0.923151 -62 TACATGAAGCTTTAAGTATTCCATACACATA 5 89 1 TTTAATATTC 0.660661 -57 TTTTTTCTTTTGAAAAAACTTAAATATCACA 6 26 1 TGAAAAACTT 0.553883 -175 TTTAGGGAACTGTAATAATTTAATTTATATA 6 151 1 TGTAAAATTT 0.791454 -50 GTCCCTACTATTTAACAATTTCTATTTTAAA 8 52 0 TTTAAAATTT 0.923151 -249 TTATTAACCATTAAAGAACTTAAAAGGAGGT 8 272 1 TTAAAAACTT 0.797155 -29 TTATATTCACTTAAAAAACTTTATAATATAA 10 103 1 TTAAAAACTT 0.797155 -44 AAGTTAACCATTTAAATATTTTCTCATCAAC 12 129 1 TTTAATATTT 0.794095 -90 TAGAACACCTTTAATAACTCTGTAGACATG 14 120 0 TTTAAAACTC 0.860714 -20 TAAAGAACTATTTAAAACTTTACTGTACATA 21 42 0 TTTAAACTTT 0.654537 -86 CATGTCAAGATTTAAATACTCCCTTATCCTA 28 61 1 TTTAATACTC 0.664868 -145 ***** ***** Masking position 5 Map Score: 7.70361 Number of sites scoring better than the average of aligned sites = 22 Number in coding regions = 7 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 8 TTTAGGACTCAATCAACCATCATACTGGAG 1 24 1 AATCAACCAT 0.666695 -20 CCCATGGATATGACTACCATTTGCAATTTT 3 119 0 TGACTACCAT 0.763971 -182 ATAAATATTGTAAGTACCATGAGAAAAAAA 4 152 0 TAAGTACCAT 0.706911 -80 TTACAATATTTATTTACCATCAGCGATAAA 4 169 1 TATTTACCAT 0.854304 -63 TTAAAATTAATAATAACCATCTGCTGTCAT 8 27 0 TAATAACCAT 0.925307 -274 ATCCGTACATTATTAACCATTAAAGAACTT 8 263 1 TATTAACCAT 0.936391 -38 AATCAGAAAATGATAACCAT 11 26 1 TGATAACCAT 0.943261 -10 CTCTATTTAAAGTTAACCATTTAAATATTT 12 120 1 AGTTAACCAT 0.845954 -99 TGTTTATTAACCATTCCCTTTGAT 21 5 1 TATTAACCAT 0.936391 -123 ATATTTAACTGGTTAACCATGATTTAGAGT 28 124 0 GGTTAACCAT 0.821928 -82 AGGAGGGCCATGAGAACCATTGAGATGATT 30 26 1 TGAGAACCAT 0.890425 -275 ********** Masking position 6 Map Score: 6.49333 Number of sites scoring better than the average of aligned sites = 108 Number in coding regions = 88 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 9 ATTCTTAAAAGGGAATGGCTCCATAAAACTAA 3 251 1 GGGATGGTCC 0.788119 -50 TATGGGCGAGAGGCTGTGCCCAGGGGATGGC 4 10 1 GAGCTGTCCC 0.910355 -222 GCTGTGCCCAGGGGATGGCCCATGATTCCGGT 4 23 1 GGGATGGCCA 0.78059 -209 ATTATTATCTGGATCCGGATCTCAGTAATAAA 6 91 1 GGACCGGTCT 0.585431 -110 TTATAAGATAGGGGATGTTCCCTTATAAATGT 10 49 0 GGGATGTCCC 0.773471 -98 TATGACGTGGGACTTCGGATCCCAAGGTCGGG 12 55 0 GACTCGGTCC 0.6392 -164 TTCCAGGCTAGACTACGGGCCCCCTACACACA 12 87 1 GACACGGCCC 0.950375 -132 CAAGGAGGATGACCCTGTCCCCGGCGGATACA 16 13 0 GACCTGTCCC 0.921827 -45 TAGAACCTATGGCGCCGGTTCTTTATATCTTT 17 21 0 GGCCCGGTCT 0.834133 -24 CCTCATGGCTGGAACTGGTCCCTACTGATGAA 21 102 0 GGACTGGCCC 0.716484 -26 AATAGGTTTGGAGTCCGGTCCCTGACCGATTA 22 44 0 GAGCCGGCCC 0.592056 -146 TCAAATGGATCGGGACCCCTC 27 7 1 GGACGGGCCC 0.704773 -15 CCACCACAACGGCAAGGTGCCCGAGACGTCTC 30 72 1 GGCAGGTCCC 0.879451 -229 *** **** *** Masking position 11 Map Score: 7.60648 Number of sites scoring better than the average of aligned sites = 786 Number in coding regions = 744 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 10 CGGAATCATGGGCCATCCCCTGGGCACAGC 4 23 0 GGCCATCCCC 0.78059 -209 CTTCCACCTTCAAGTTTTGTG 6 190 0 TTCCACCTTC 0.791814 -11 ACCATCTGCTGTCATTCTCCCTGATGGTAA 8 12 0 GTCATTCTCC 0.893254 -289 ACCTTTTCACCTCCTTTTAAGTTC 8 287 0 TTTCACCTCC 0.876488 -14 CAGTTCACCTGCTCGAGATATT 9 3 1 GTTCACCTGC 0.894672 -74 ACTTATATAGTTCCACCCCCTTAAATAGGT 14 13 0 TTCCACCCCC 0.886359 -127 TGATGGTCTGGTCATCCTTCTCTGGAAATA 14 89 0 GTCATCCTTC 0.817684 -51 CGGGGACAGGGTCATCCTCCTTGTTGAACC 16 22 1 GTCATCCTCC 0.966791 -36 AGAGATATAAGTTAATCTCCAGTGAAGAAT 22 92 1 GTTAATCTCC 0.822623 -98 GGGTTTATCCGTTCATCTGCAGGATCTATC 22 122 0 GTTCATCTGC 0.709437 -68 GGATAGCACTGGCCTCCTCCAGGGGGAGGA 29 16 1 GGCCTCCTCC 0.953094 -57 CGAAATGGAGGTCAACCTCCTCCCCCTGGA 29 33 0 GTCAACCTCC 0.982496 -40 GGTCTCCCTCCCGGTGTGCAG 30 290 0 GTCTCCCTCC 0.763894 -11 ********** Masking position 7 Map Score: 6.40796 Number of sites scoring better than the average of aligned sites = 1016 Number in coding regions = 979 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 11 CTCAGTCTCCTTATAAGTGTGTATTAAACT 3 19 1 TTATAAGTGT 0.846628 -282 AATTTTTAAATAATAAGTTTAATACACACT 3 34 0 TAATAAGTTT 0.781117 -267 GTTTTTCCAGTTATCAGTTTATCACCCCGG 4 62 1 TTATCAGTTT 0.730354 -170 CTTGCTGTGGAAATAAGTGAAAGGCGGTCC 5 12 0 AAATAAGTGA 0.4897 -134 TTAATGTGATATTTAAGTTTTTTCAAAAGA 6 31 0 ATTTAAGTTT 0.684708 -170 TTTTAAGTGAATATAAGTTTAGAAGAAGTC 10 89 0 ATATAAGTTT 0.944725 -58 GGGTGGAACTATATAAGTTTAGAGAGTGCC 14 25 1 ATATAAGTTT 0.944725 -115 AAGTTAGAACTTATAAGTTATAAGGTGGTT 22 13 0 TTATAAGTTA 0.894517 -177 CCCTGACCGATTATAAGTTAGAACTTATAA 22 27 0 TTATAAGTTA 0.894517 -163 CAAACCTATTATATAGGTTTCCTGAAAGAG 22 66 1 ATATAGGTTT 0.762958 -124 CCTGAAAGAGATATAAGTTAATCTCCAGTG 22 86 1 ATATAAGTTA 0.909724 -104 ********** Masking position 4 Map Score: 4.68357 Number of sites scoring better than the average of aligned sites = 45 Number in coding regions = 18 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 12 GATGGTAAATAAATATTGTAAGTACCATGA 4 160 0 AAATATTGTA 0.74659 -72 TCTCAGTAATAAAAAATGTAGTAATAAAAA 6 110 1 AAAAAATGTA 0.944785 -91 CTTAAACTGGAAAAAATGTAATACTCAATT 8 184 0 AAAAAATGTA 0.944785 -117 CTTTAATGGTTAATAATGTACGGATCTTCC 8 258 0 TAATAATGTA 0.74659 -43 TAAACAATGTATGCCTATGAA 10 136 0 AAACAATGTA 0.909401 -11 TAAATCAACAAAAAAATGTAATAATATATC 13 59 0 AAAAAATGTA 0.944785 -21 ********** Masking position 5 Map Score: 1.47349 Number of sites scoring better than the average of aligned sites = 10 Number in coding regions = 5 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 13 GTCACACTCTCCCCTGGATT 4 222 0 GTCACACTCT 0.887847 -10 ATTTTTCTGTGGCACTCTCTAAACTTATAT 14 35 0 GGCACTCTCT 0.980832 -105 ATGTTGGTATGGGACACTCTCTTTAATGGA 23 43 1 GGGACACTCT 0.972322 -83 CCGCCAGTATGGAATACTCTATAATAGGAT 28 86 0 GGAATACTCT 0.813019 -120 TTACTTCTCAGGCGCTCTCTATCTCTTTTC 30 178 0 GGCGCTCTCT 0.976968 -123 GTTATTGAGGGGGGTTCTCTATCCGGTATG 30 219 0 GGGGTTCTCT 0.907727 -82 ********** Masking position 8 Map Score: 0.922632 Number of sites scoring better than the average of aligned sites = 71 Number in coding regions = 67 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 14 TGGACCGCCTTTCACTTATTT 5 2 1 GGACCGCCTT 0.954336 -144 TAATTACCCTCCTTTTTTATTTTC 10 5 1 TACCCTCCTT 0.867623 -142 GAAATATCCAGACCCGCCTTTATTATCATT 14 65 0 GACCCGCCTT 0.981997 -75 GGAACCACCTTATAACTTATA 22 2 1 GAACCACCTT 0.932361 -188 GATTAACCCACCTTCCTAGATTTA 26 17 0 AACCCACCTT 0.820598 -14 GGAACTGGGAGGCCCTCCCGAAATGGAGGT 29 51 0 GGCCCTCCCG 0.940764 -22 TGGTTCTCATGGCCCTCCTGTGGGGCGTTA 30 15 0 GGCCCTCCTG 0.965572 -286 ACCGGATAGAGAACCCCCCTCAATAACTCA 30 222 1 GAACCCCCCT 0.867737 -79 ********** Masking position 5 Map Score: 1.76482 Number of sites scoring better than the average of aligned sites = 378 Number in coding regions = 363 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 15 GGGATGGCCCATGATTCCGGTTACATGTGT 4 34 1 ATGATTCCGG 0.941422 -198 TTCTTTGCCTGTAATGCCGGGGTGATAAAC 4 78 0 GTAATGCCGG 0.876225 -154 TGTAGAACCTATGGCGCCGGTTCTTTATAT 17 25 0 ATGGCGCCGG 0.983106 -20 CGTTTCTGGATGGCTCCGGGAGAAAAAAA 20 38 0 ATGGCTCCGG 0.975178 -19 ATTAATAAGTAGTGCCGGGATATTATAA 23 9 1 GTAGTGCCGG 0.954441 -117 GATTTGCATCATGGTTCCAGCCATGTTGCA 24 69 1 ATGGTTCCAG 0.880256 -48 ********** Masking position 2 Map Score: 0.541375 Number of sites scoring better than the average of aligned sites = 153 Number in coding regions = 135 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172