AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i00620_mthe_reg_100.orf -o00620_mthe_100.ace -a/home/amcguire/genomes/ORF_mthe.txt -z/home/amcguire/genomes/mthe.fna -g0.50 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.5 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 MTH147 23 phenylacrylic acid decarboxylase #2 MTH148 47 conserved protein #3 MTH150 75 conserved protein #4 MTH187 142 conserved protein #5 MTH216 96 acetyl-CoA synthetase #6 MTH217 134 acetyl-CoA synthetase #7 MTH347 60 O-antigen transporter #8 MTH348 194 rhamnosyl transferase #9 MTH460 300 phosphoenolpyruvate synthase homolog #10 MTH700 110 conserved protein #11 MTH702 27 acetyl-CoA synthetase related protein #12 MTH723 149 2-isopropylmalate synthase #13 MTH756 145 rubrerythrin #14 MTH758 38 S-D-lactoylglutathione methylglyoxal lyase #15 MTH1032 229 ferredoxin (putative 2-oxoglutarate oxidoreductase, delat subunit) #16 MTH1107 107 oxaloacetate decarboxylase, alpha subunit #17 MTH1117 43 phosphoenolpyruvate synthase #18 MTH1119 132 ribosomal protein L10 #19 MTH1202 236 proteasome, beta subunit #20 MTH1203 69 cleavage and polyadenylation specificity factor #21 MTH1204 46 phosphoribosylformylglycinamidine cyclo-ligase #22 MTH1481 142 isopropylmalate synthase #23 MTH1603 63 acetyl-CoA synthetase #24 MTH1630 191 2-isopropylmalate synthase #25 MTH1648 110 dihydrolipoamide dehydrogenase #26 MTH1851 105 unknown #27 MTH1917 189 biotin carboxylase Motif number 1 TAATCTGTTCCAGGAGGTTTCTGTCCTGATT 2 15 0 CAGGAGGTTC 0.989202 -33 AGCTGTTCAACAGCGGGTTCCCCTATTTCAG 4 19 0 CAGCGGGTCC 0.974289 -124 CACTTCTGGAGGTCCCGGCATTCCTC 7 6 1 CTGGAGGTCC 0.979162 -55 CCAGGCGGTGTCCCCTGTGTGG 11 16 0 CAGGCGGTTC 0.955364 -12 ATCCATGCCTCAGCAGCTGCCAGACATAAAA 13 74 1 CAGCAGCTCC 0.911441 -72 TTTTTTTAGCCAGGAGGTCCCGAT 14 25 1 CAGGAGGTCC 0.997303 -14 AATAAATTATCAGGGTGTTCCCTTCACCAGA 15 126 0 CAGGGTGTCC 0.93972 -104 CTGTGTATTTAAGGAAGTTCCTACTATGTAT 16 52 1 AAGGAAGTCC 0.907828 -56 TTCAACCCCTCAGGAAGCCCCATCTATTATA 19 51 1 CAGGAAGCCC 0.92331 -186 CAATATATAACAGGAGGTCCTTATTAAACTT 19 93 0 CAGGAGGTCT 0.966821 -144 TAGGAGAGAGAAGGAGGTATCTTGGGGGATA 27 33 0 AAGGAGGTTC 0.933832 -157 ******** ** Masking position 3 Map Score: 13.6784 Number of sites scoring better than the average of aligned sites = 467 Number in coding regions = 438 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 2 GTCATAAAGGCTTTCCTCATACTCAAGAAGGGT 5 9 1 GGCTTTCAAT 0.784415 -88 TGTTTGTGTTGTTTTTCTGGTCTTTTTGGGTCTGT 9 22 0 GTTTTTCTTT 0.728213 -279 TAAGTGTTTCGGTTTTTTGGTGTGTTTGTGTTGTT 9 44 0 GGTTTTTTTT 0.728213 -257 GCATGGCAAAGGGTTTCCTCTGATTTTTTCAGAGT 9 185 0 GGGTTTCTAT 0.896947 -116 TGTATATTCCGGTTTTCAGGTTTTCCGGGGCCTAT 15 50 0 GGTTTTCTTC 0.913912 -180 CTTCACCAGAGGTTTTCAGCAAAATGCCCTGTCAG 15 101 0 GGTTTTCAAT 0.95811 -129 AAATTATCAGGGTGTTCCCTTCACCAGAGGTTTTC 15 119 0 GGTGTTCTAC 0.787315 -111 TATATTTTCAGGTTATCTATTAACTCTTTGCTGTC 18 33 1 GGTTATCTAT 0.941456 -100 GTTGAAGAACGGTTATCCGGTCATTAAAAGGAATG 19 22 0 GGTTATCTAT 0.941687 -215 GTATATAAAGGGTTTTCATTTAACCCTGCAAAGGG 19 153 0 GGTTTTCTAC 0.961107 -84 ATCCAGGACTGGTTTTTTATTATTTTTATTAGAGG 19 205 1 GGTTTTTTTT 0.728213 -32 AATAGTTTAAGGTTATCTAAATAGTTAGCC 21 6 0 GGTTATCAAT 0.870979 -41 TGGTTTTCTGTAAATTACCTGGCACC 22 2 1 GGTTTTCAAT 0.958407 -141 TCATTCTGAAGTTTTTCATATGAGTCAGC 26 5 0 GTTTTTCTAT 0.865034 -101 ******* * * * Masking position 6 Map Score: 9.02544 Number of sites scoring better than the average of aligned sites = 153 Number in coding regions = 131 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 24 Fraction of orfs with sites within 600 bp upstream = 0.0038548 Motif number 3 GCTGCTGCGGCCCCCCTCCTAACAGATTTG 4 74 0 CCCCCCTCCT 0.965028 -69 AGAGCAGTTGAACCCCTCATAAAGGCT 4 126 1 AACCCCTCAT 0.968562 -17 AAACTGAACGCCGCCCTCATCGAAGAACTG 5 47 1 CCGCCCTCAT 0.955138 -50 CCCACCTCATTTTTTTCGAG 6 1 1 CCCACCTCAT 0.98426 -134 GAGGTCCCGGCATTCCTCATAGGGATTAAC 7 19 1 CATTCCTCAT 0.710005 -42 AAATCTGTCGCACCCCACATCATCATACGA 8 45 0 CACCCCACAT 0.932767 -150 CACACGTGGTCATACCTCATTCCTCATCAG 9 133 1 CATACCTCAT 0.889566 -168 GATTACACCTCATCAGCGTCAGG 10 98 0 TACACCTCAT 0.838799 -13 CGTGACCCTCTCATGAGATCAATT 16 94 0 ACCCTCTCAT 0.765128 -14 TACTCCCACCTCATTCCTTTTAAT 19 5 1 CCCACCTCAT 0.98426 -232 ACCGTTCTTCAACCCCTCAGGAAGCCCCAT 19 44 1 AACCCCTCAG 0.852981 -193 ********** Masking position 6 Map Score: 9.74304 Number of sites scoring better than the average of aligned sites = 522 Number in coding regions = 487 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 4 GAGGGGTTCAACTGCTCTGGGATCTCCAAT 4 114 0 ACTGCTCTGG 0.881507 -29 GATAGGATGGACTGGACTGGACTGGACTGG 8 104 1 ACTGGACTGG 0.991866 -91 ACTGGACTGGACTGGACTGGACTGGACTGG 8 114 1 ACTGGACTGG 0.991866 -81 ACTGGACTGGACTGGACTGGACTGATAAAA 8 124 1 ACTGGACTGG 0.991866 -71 AGAGTGGATTCCTGGATTGATTACTGCCTG 9 160 0 CCTGGATTGA 0.832682 -141 CATCTTTACCCCGGGACTGACAGGGCATTT 15 85 1 CCGGGACTGA 0.93195 -145 ACAATGGGATCCAGGACTGGTTTTTTATTA 19 197 1 CCAGGACTGG 0.929552 -40 CTTGATTCCCCGTGGTCTGGCATTTTATCT 22 123 0 CGTGGTCTGG 0.921869 -20 ********** Masking position 8 Map Score: 8.86966 Number of sites scoring better than the average of aligned sites = 95 Number in coding regions = 81 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 5 TATTAATAAAAAATTTATAATAAATATTATCTATCATGA 6 33 1 AAATAATATA 0.976377 -102 AAGTTTCTCTCAACTTATATATTTTACTATTATTAATCA 6 69 0 CAATAATATA 0.906172 -66 GAAATAAAGTAATAAGTAATATTATTTAAACTTT 8 6 1 AAATAATATA 0.976379 -189 TTAAACATTTAAGATGAGAAACTTTATTAAGGGAAGAGA 10 28 1 AAGTAATATA 0.906172 -83 GCGTCAGGAAAAATTAATAATGATTATTAATGATAAATG 10 67 0 AAATAATATA 0.976377 -44 TGCCAGACATAAAATGAAAGGATTTAATATGATGTTCTA 13 91 1 AAATAATATA 0.976379 -55 CTATTATAAAAAAATCGCAAAGTTTAATAAGGACCTCCT 19 74 1 AAATGATATA 0.906172 -163 GCATTTATTTAAAATTAGATATATTAGTATAAAAGGTTT 24 124 0 AAATAATATA 0.976379 -68 ATTATCAGTTAAAATCACAAACCTTAATATGTGTTGATA 26 57 0 AAATAATATA 0.976379 -49 *** * * * ** ** Masking position 9 Map Score: 7.97256 Number of sites scoring better than the average of aligned sites = 14 Number in coding regions = 3 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 6 GTGGGGTGCGACAGATTTTTACTGCTGTAGG 8 57 1 ACAGATTTTA 0.972352 -138 CTGTGATAAAACAGATATATATTC 9 287 1 ACAGATTATA 0.887386 -14 ACCGGAATATACACATCTTTACCCCGGGACT 15 72 1 ACACATTTTA 0.819951 -158 ATATATTGGTACAGAACTTTTATGTCCATGG 19 116 1 ACAGAATTTT 0.736946 -121 GGGATCCAGGACTGGTTTTTTATTATTTTTA 19 202 1 ACTGGTTTTT 0.521021 -35 ATATCAGTAAACAGGTGTTTACTGCAATTAA 20 25 0 ACAGGTTTTA 0.924178 -45 ATTGTAGCCCACAGAAATTTAAGCAGATAAA 22 99 1 ACAGAATTTA 0.925947 -44 GTCAGAATACACTAATGTTTAGATAAAGATC 25 43 1 ACTAATTTTA 0.683359 -68 TTTATATGTGACGGATCTTTATCTAAACATT 25 56 0 ACGGATTTTA 0.891506 -55 ATTGTTTCCCACAAATCTTTATATGTGACGG 25 73 0 ACAAATTTTA 0.844191 -38 TTCAGAATGAACTGAATTTTAATTGTTTATC 26 30 1 ACTGAATTTA 0.832789 -76 TGAAGTTTTAACAGATATATAGTATATTGAA 27 157 0 ACAGATTATA 0.887386 -33 ****** **** Masking position 1 Map Score: 6.84272 Number of sites scoring better than the average of aligned sites = 42 Number in coding regions = 26 Number in noncoding regions = 16 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 7 TTTTTTTCGAGGTTATTAATAAAAAATTTATAATA 6 20 1 GGTAATAAAA 0.941331 -115 TATCTATCATGATTAATAATAGTAAAATATATAAG 6 60 1 GATAATGTAA 0.824548 -75 AATTAATAATGATTATTAATGATAAATGTCTCTTC 10 60 0 GATAATATAA 0.957509 -51 GGAACACCCTGATAATTTATTATAATCTGAGTTCT 15 136 1 GATATTATAA 0.862338 -94 TGAGTATCTCGGTAACCATTAATAAATATTGTCTT 18 69 0 GGTAATATAA 0.941331 -64 AAGATCACTTCTAAAAAACAGGGAATA 20 53 0 GATATTAAAA 0.862338 -17 CGGGAACCCGGGTTATAACTTATAAGATATAACTT 22 37 1 GGTAATATAA 0.941331 -106 CAACTATTTAAATCATGAATTAAAAAAATATTAAC 23 30 1 AATAATAAAA 0.663162 -34 AATATGTGTTGATAAACAATTAAAATTCAGTTCAT 26 36 0 GATAATAAAA 0.957509 -70 TTGTTTAAAAGATTATCAGTTAAAATCACAAACCT 26 72 0 GATAATAAAA 0.957509 -34 *** * * * **** Masking position 10 Map Score: 4.50869 Number of sites scoring better than the average of aligned sites = 36 Number in coding regions = 17 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 8 TCGCCACCGGCTCCATGAATATATACT 3 7 1 CCGGCCCATG 0.954936 -69 TGAAAAGACACCTTCGCCATGAACTCGGACC 5 75 1 CCTTCCCATG 0.98476 -22 TTTTCATCTCTCCATGTTCGAGGATC 8 179 0 ATCTCCCATG 0.881178 -16 CAGAGGAAACCCTTTGCCATGCAAAGATGTC 9 198 1 CCTTTCCATG 0.849535 -103 AGTAGAAGAAACCTCACCATACTGAAAAGAT 9 249 1 ACCTCCCATA 0.941425 -52 CAGGGTGTTCCCTTCACCAGAGGTTTTCAGC 15 116 0 CCTTCCCAGA 0.865659 -114 ACCCAGTACACCCTCGCCATAGACAGGTACA 17 15 1 CCCTCCCATA 0.982747 -29 CTGCAAAGGGCTGTCCCCATGGACATAAAAG 19 132 0 CTGTCCCATG 0.952404 -105 TCAATAACCCTCTCCAAATTAATAGGAT 25 8 1 CCCTCCCAAA 0.899794 -103 CGGTTACCGTAAGTCCCCATGTCATCCACAT 27 83 1 AAGTCCCATG 0.76201 -107 ***** ***** Masking position 9 Map Score: 5.07841 Number of sites scoring better than the average of aligned sites = 509 Number in coding regions = 483 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 9 TCACTGTCATCAAGGGCCTCAATGAGCTGT 4 44 0 CAAGGGCCTC 0.936243 -99 ATGAGGAATGCCGGGACCTCCAGAAGTG 7 9 0 CCGGGACCTC 0.994048 -52 TACTACCACACAGGGGACACCGCCTGG 11 11 1 CAGGGGACAC 0.864652 -17 GTATCTGATACCGGTACCACAGACGATGAA 12 29 1 CCGGTACCAC 0.890569 -121 ATCGGGACCTCCTGGCTAAAA 14 28 0 TCGGGACCTC 0.97449 -11 TTCAGGTTTTCCGGGGCCTATGTAAATCAG 15 41 0 CCGGGGCCTA 0.948265 -189 CAAAGTTTAATAAGGACCTCCTGTTATATA 19 91 1 TAAGGACCTC 0.774074 -146 TACCTGGCACCCGGGAACCCGGGTTATAAC 22 26 1 CCGGGAACCC 0.933397 -117 ********** Masking position 4 Map Score: 3.62803 Number of sites scoring better than the average of aligned sites = 896 Number in coding regions = 854 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 34 Fraction of orfs with sites within 600 bp upstream = 0.00546097 Motif number 10 GGTTTCTGTCCTGATTTTTT 2 1 0 CTGATTTTTT 0.860673 -47 TGGGGTGCGACAGATTTTTACTGCTGTAGG 8 58 1 CAGATTTTTA 0.860673 -137 AGGGTTTCCTCTGATTTTTTCAGAGTGGAT 9 181 0 CTGATTTTTT 0.860673 -120 TGTGATAAAACAGATATATATTC 9 288 1 CAGATATATA 0.624202 -13 TTCCCTTCACCAGAGGTTTTCAGCAAAATG 15 110 0 CAGAGGTTTT 0.688451 -120 AGGGAACACCCTGATAATTTATTATAATCT 15 134 1 CTGATAATTT 0.361227 -96 AAATACACAGCAGATGTATTAATTCATCAG 16 32 0 CAGATGTATT 0.759335 -76 TATATTGGTACAGAACTTTTATGTCCATGG 19 117 1 CAGAACTTTT 0.582143 -120 GGATCCAGGACTGGTTTTTTATTATTTTTA 19 203 1 CTGGTTTTTT 0.623827 -34 TATCAGTAAACAGGTGTTTACTGCAATTAA 20 25 0 CAGGTGTTTA 0.681024 -45 TTGTAGCCCACAGAAATTTAAGCAGATAAA 22 100 1 CAGAAATTTA 0.720856 -43 TGATGGTCCTCAGATATTTTCAAATTCACT 24 14 1 CAGATATTTT 0.901129 -178 TCAGTTCATTCTGAAGTTTTTCATATGAGT 26 15 0 CTGAAGTTTT 0.768769 -91 TCAGAATGAACTGAATTTTAATTGTTTATC 26 31 1 CTGAATTTTA 0.636397 -75 GAAGTTTTAACAGATATATAGTATATTGAA 27 157 0 CAGATATATA 0.624202 -33 ********** Masking position 9 Map Score: 3.54723 Number of sites scoring better than the average of aligned sites = 161 Number in coding regions = 118 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 11 AAAATCAGGACAGAAACCTCCTGGAACAGA 2 13 1 CAGAAACCTC 0.975632 -35 AAAAAAGTAGAAGAAACCTCACCATACTGA 9 244 1 AAGAAACCTC 0.947311 -57 GTACCGGTATCAGATACCAGCCTCCACCTG 12 16 0 CAGATACCAG 0.919221 -134 CTATGTAAATCAGATACCTGAGATTCTCCA 15 24 0 CAGATACCTG 0.904639 -206 CATATCCCCCAAGATACCTCCTTCTCTCTC 27 31 1 AAGATACCTC 0.962228 -159 ********** Masking position 6 Map Score: 1.28826 Number of sites scoring better than the average of aligned sites = 34 Number in coding regions = 28 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 12 AGGTTTCTGTCCTGATTTTTT 2 1 0 CCTGATTTTT 0.793163 -47 CCCACCTCATTTTTTTCGAGGTTAT 6 5 1 CCTCATTTTT 0.664003 -130 CAAAGGGTTTCCTCTGATTTTTTCAGAGTGG 9 183 0 CCTCTGATTT 0.895813 -118 CATATTAAATCCTTTCATTTTATGTCTGGCA 13 91 0 CCTTTCATTT 0.556297 -55 AAATCAGATACCTGAGATTCTCCATTTCATG 15 17 0 CCTGAGATCT 0.949736 -213 AAGGGAACACCCTGATAATTTATTATAATCT 15 133 1 CCTGATAATT 0.664699 -97 TTATATGTATCCTTATATTTTCAGGTTATCT 18 20 1 CCTTATATTT 0.848699 -113 AAATAATCCTCCTGTGATCCTGTGAGAATAA 18 112 0 CCTGTGATCT 0.93209 -21 ATAAGGACCTCCTGTTATATATTGGTACAGA 19 100 1 CCTGTTATTA 0.590167 -137 GGCTGATGGTCCTCAGATATTTTCAAATTCA 24 11 1 CCTCAGATTT 0.922098 -181 CACTCTCAAACCTTTTATACTAATATATCTA 24 117 1 CCTTTTATCT 0.770223 -75 ATGGATGAGCCCTGAGATGCTGC 27 3 0 CCTGAGATCT 0.949736 -187 ******** ** Masking position 3 Map Score: 3.47366 Number of sites scoring better than the average of aligned sites = 335 Number in coding regions = 306 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 13 AATAAGTAATATTATTTAAACTTTTCGTAT 8 21 1 ATTATTTAAA 0.76508 -174 AACCATATATACCATTTAAAACCAAACTCT 12 93 1 ACCATTTAAA 0.794425 -57 TACATAGGATACTATGTAGAACATCATATT 13 116 0 ACTATGTAGA 0.923396 -30 TACATAGTATCCTATGTAAAAAGGATGG 13 128 1 CCTATGTAAA 0.912342 -18 TTTTCCGGGGCCTATGTAAATCAGATACCT 15 35 0 CCTATGTAAA 0.912342 -195 TTCTTGATTAATTATTTAAATTCTGAAGGC 15 182 1 ATTATTTAAA 0.76508 -48 GGAAGTTCCTACTATGTATATAAAGAATCT 16 64 1 ACTATGTATA 0.815524 -44 GGCTAACTATTTAGATAACCTTAAA 21 6 1 ACTATTTAGA 0.903507 -41 TATTCTGCCAACTATTTAAATCATGAATTA 23 22 1 ACTATTTAAA 0.942982 -42 ********** Masking position 5 Map Score: 4.10242 Number of sites scoring better than the average of aligned sites = 30 Number in coding regions = 13 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 14 TCCCCTATTTCAGATAGGAGC 4 2 0 CAGATAGGAG 0.913152 -141 ACAAATCTGTTAGGAGGGGGGCCGCAGCAG 4 73 1 TAGGAGGGGG 0.94195 -70 ATTTCTGCAGCAGAAGGGAGACAACATACA 9 92 1 CAGAAGGGAG 0.966279 -209 TAAAAGGAATGAGGTGGGAGTA 19 3 0 GAGGTGGGAG 0.906635 -234 TTTTTTATAATAGATGGGGCTTCCTGAGGG 19 57 0 TAGATGGGGC 0.883833 -180 TGGCAGAATATAGATGGGTGC 23 2 0 TAGATGGGTG 0.920447 -62 AAAATATTAACAGAAGGGGG 23 54 1 CAGAAGGGGG 0.971913 -10 GCATTGATAGTAGATAGGAGAGAGAAGGAG 27 48 0 TAGATAGGAG 0.89698 -142 ********** Masking position 2 Map Score: 3.79712 Number of sites scoring better than the average of aligned sites = 263 Number in coding regions = 234 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 15 TTTCTCTGATGAGTTAATCCCTATGAGGAATGCC 7 27 0 GGATCCCTAT 0.940098 -34 CCCTTCTGCTGCAGAAATCCCTTTCAGTATTTAA 9 76 0 GAATCCCTTT 0.866364 -225 TAATTATGTGGAACTTAAACATTTAAGATGAGAA 10 14 1 GAAAACATTT 0.527777 -97 ACTTTATTAAGGGAAGAGACATTTATCATTAATA 10 48 1 GGAGACATTT 0.899242 -63 ACATAAATGGGCACTTAACCATATATACCATTTA 12 77 1 GAAACCATAT 0.730137 -73 CAACAAAAATGGGCTTAGACATTTCATTCCCTCA 13 24 1 GGAGACATTT 0.899242 -122 TCAGATACCTGAGATTCTCCATTTCATGGTTTAC 15 11 0 GGCTCCATTT 0.870632 -219 TTATGTCCATGGGGACAGCCCTTTGCAGGGTTAA 19 135 1 GGAGCCCTTT 0.957485 -102 AAAGGTTTGAGAGTGCATCCATATTCCGGTGGCT 24 98 0 GGATCCATAT 0.956597 -94 CAGCATCTCAGGGCTCATCCATATCCCCCAAGAT 27 12 1 GGATCCATAT 0.956601 -178 * * ******** Masking position 12 Map Score: 1.38415 Number of sites scoring better than the average of aligned sites = 107 Number in coding regions = 93 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678