AlignACE version 2.2  July 7, 1998
/home/amcguire/bin/alignACE -i003_GMP_Biosynthesis_bsub_reg_100.orf -aORF_bsub.txt -zbsub.fna -g0.435 -x5 
Parameter values:
 expect =  	5
 ncols =   	10
 npass =   	1000
 maxnpass =	100
 nruns =   	1000
 maxnruns =	100
 repeat =  	15
 maxreps = 	3
 nread =   	500
 ncycles = 	1
 fragment =	1
 psfact =  	0.1
 gcback =  	0.435
 maxlen =  	30
 weight =  	0.8
 exclude = 	0

Input sequences:
#1	guaB	120	inositol-monophosphate dehydrogenase
#2	guaA	232	GMP synthetase

Motif number 1

TATATTTCTTAATCCTTTCCGTTATCTAAA	1	12	1	AATCCTTTCC	    0.944193	-109
TAAATATTTCAACTCTTTCCCGCTTCCTTG	1	38	1	AACTCTTTCC	    0.994924	-83
ATTTTCCCATAACTCTCTCGAATCATTCCA	2	27	0	AACTCTCTCG	     0.99209	-206
GAGTCAGGCCAACTCGCTCCCAGACTCCGA	2	118	0	AACTCGCTCC	    0.997906	-115
ACAGATATGAAGCTCGCTCCGCCCTCTTTG	2	164	0	AGCTCGCTCC	    0.995359	-69
          **********

Masking position 8
Map Score:   7.96545

Number of sites scoring better than the average of aligned sites = 85
Number in coding regions = 58
Number in noncoding regions = 27
Number of orfs with sites within 600 bp upstream = 20
Fraction of orfs with sites within 600 bp upstream = 0.00321234


Motif number 2

TCTTTCCCGCTTCCTTGACATGCTCTTGGC	1	51	1	TTCCTTGACA	    0.943684	-70
AAATCCCCCTCTTTTCGGCAAAATATTATA	1	97	0	CTTTTCGGCA	    0.989263	-24
       AGATTCTTCGGCGCTATGGAATG	2	4	1	TTCTTCGGCG	    0.987072	-229
GTCTTGACCGCTTATCGACGTGTTGTTAGA	2	74	1	CTTATCGACG	    0.936582	-159
TCGCTCCGCCCTCTTTGGCAAGGCCGTTTG	2	151	0	CTCTTTGGCA	    0.989261	-82
CTCCTCTAAGTTTTTTGACACAGAAAAAAA	2	199	0	TTTTTTGACA	     0.95952	-34
          **********

Masking position 5
Map Score:   6.30388

Number of sites scoring better than the average of aligned sites = 563
Number in coding regions = 520
Number in noncoding regions = 43
Number of orfs with sites within 600 bp upstream = 45
Fraction of orfs with sites within 600 bp upstream = 0.00722775


Motif number 3

CCTTTCCGTTATCTAAATATTTCAACTCTT	1	25	1	ATCTAAATAT	    0.940049	-96
CTAGTTGATAATCTACATATAATATTTTGC	1	80	1	ATCTACATAT	    0.986179	-41
GGTCAAGACCATCTTCTTTTAATTAAATTT	2	53	0	ATCTTCTTTT	    0.929992	-180
GGGCGGAGCGAGCTTCATATCTGTCCTCGT	2	170	1	AGCTTCATAT	    0.979455	-63
          **********

Masking position 4
Map Score:   1.4234

Number of sites scoring better than the average of aligned sites = 207
Number in coding regions = 176
Number in noncoding regions = 31
Number of orfs with sites within 600 bp upstream = 27
Fraction of orfs with sites within 600 bp upstream = 0.00433665


Motif number 4

TGAATATTATCGGAGTCTGGGAGCGAGTTG	2	109	1	CGGAGTCTGG	    0.997346	-124
GGCCGTTTGCCGGAGTCAGGCCAACTCGCT	2	130	0	CGGAGTCAGG	     0.99849	-103
CCAAAGAGGGCGGAGCGAGCTTCATATCTG	2	163	1	CGGAGCGAGC	    0.993965	-70
          **********

Masking position 4
Map Score:   2.43522

Number of sites scoring better than the average of aligned sites = 11
Number in coding regions = 9
Number in noncoding regions = 2
Number of orfs with sites within 600 bp upstream = 1
Fraction of orfs with sites within 600 bp upstream = 0.000160617


Motif number 5

TTATCAACTAGCCAAGAGCATGTCAAGGAAG	1	60	0	GCAAGAGCAT	    0.995156	-61
TCGATAAGCGGTCAAGACCATCTTCTTTTAA	2	61	0	GCAAGACCAT	    0.997362	-172
CGCCCTCTTTGGCAAGGCCGTTTGCCGGAGT	2	144	0	GCAAGGCCGT	     0.99627	-89
          * *********

Masking position 5
Map Score:   1.04176

Number of sites scoring better than the average of aligned sites = 39
Number in coding regions = 35
Number in noncoding regions = 4
Number of orfs with sites within 600 bp upstream = 2
Fraction of orfs with sites within 600 bp upstream = 0.000321234


Motif number 6

          **********

No masking
Map Score:   -1.17788e-14

Number of sites scoring better than the average of aligned sites = 0
Number in coding regions = 0
Number in noncoding regions = 0
Number of orfs with sites within 600 bp upstream = 0
Fraction of orfs with sites within 600 bp upstream = 0


Motif number 7

          **********

No masking
Map Score:   -1.17788e-14

Number of sites scoring better than the average of aligned sites = 0
Number in coding regions = 0
Number in noncoding regions = 0
Number of orfs with sites within 600 bp upstream = 0
Fraction of orfs with sites within 600 bp upstream = 0


Motif number 8

          **********

No masking
Map Score:   -1.17788e-14

Number of sites scoring better than the average of aligned sites = 0
Number in coding regions = 0
Number in noncoding regions = 0
Number of orfs with sites within 600 bp upstream = 0
Fraction of orfs with sites within 600 bp upstream = 0