AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i308_mixed22_bsub_reg_300.orf -aORF_bsub.txt -zbsub.fna -g0.435 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.435 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 pgsA 300 phosphatidylglycerophosphate synthase #2 recA 172 multifunctional SOS repair regulator #3 pbpX 167 penicillin-binding protein #4 ymdA 276 similar to hypothetical proteins #5 ymdB 68 similar to hypothetical proteins #6 spoVS 199 spoVS #7 tdh 265 threonine 3-dehydrogenase #8 ymcB 147 similar to hypothetical proteins #9 cotE 261 morphogenic protein #10 mutS 132 mutS #11 miaA 98 tRNA isopentenylpyrophosphate transferase #12 ymaH 39 similar to host factor-1 protein #13 spoVK 300 alternate gene name: spoVJ; disruption leads to the production of immature spores (stage V sporulation) #14 ynbA 220 similar to GTP-binding protein protease modulator Motif number 1 AAGTGGCAGCTCTTTAAAAGAAGGAACGCTGAAAAAAGACGAA 1 48 1 TTAAAAGAGA 0.877563 -253 AGACGAAACCTATAAAAAAGACATAACTGATCAGAAACAAGTT 1 84 1 TTAAAAGAAA 0.982614 -217 TTATCATTTTTTTGCAAAATACAAAAAAGCTGAGTTTTTCACT 3 45 0 TTAAAATAAA 0.952415 -123 CTAAAAAAGTTGTCAAAAAAAGCAATATTTTTATCATTTTTTT 3 75 0 TTAAAAAACA 0.791298 -93 TTAACAATCATGTTAAAAAAACAAATGTTACAACTTCATTGTA 4 110 0 TTAAAAAAAA 0.942015 -167 TTCCTTGCCGTCAAAAAAATAAAGTGATGCTTAGCGCATCACT 5 11 0 TAAAAATAAA 0.812285 -58 GGCAAGGAATTTTCAAGAAGAAAGGATTTACAAA 5 45 1 TTAGAAGAAA 0.863748 -24 TTTTAATATTTTTATAAAATAACCATATGTTCAA 6 2 0 TTAAAATACA 0.823671 -198 TTTATAAAAATATTAAAAAGAAAAGCAGGAATATAGCAACTCC 6 27 1 TTAAAAGAAA 0.982614 -173 GAGCTAAAACGTTTCAAAAAAAATTTCCGCCCATTTTTCAAGA 7 133 1 GTAAAAAAAA 0.780657 -133 CTTTTGTCCTTCTGGAAAAGACAGTTCTGTTTACGCTTATTCC 7 182 1 TTAAAAGAAA 0.982605 -84 ACCGCACAAATGATAAAAAAACACGGGCCTGTAAAGGCACCGT 9 13 0 TAAAAAAAAA 0.778383 -249 TGCATTTTTATAAATAAAATATAAAAATACAAAGTTTCTGTTC 9 172 0 TAAAAATAAA 0.812285 -90 GATATATCAATATAAAAAAGAGACTTGGGGGTACTGTCTCCCC 10 22 0 TTAAAAGAAA 0.982614 -111 TATAATGAAGGTTGGAAAATAGAAACGTTGATACATAGTGAGG 10 91 1 GTAAAATAAA 0.814294 -42 ATGGGGGAGATTTATAAAAGAGAGTGATACATA 11 76 1 TTAAAAGAAA 0.982614 -23 CAGCCCGTTGTATGAAAAAGAAATAATGAGAAAGAAGCTCACT 13 63 1 TTAAAAGAAA 0.982614 -238 TACTGCCCAATATGCAAAAGAAAGGAACATCCATTTGAACGAA 14 110 1 TTAAAAGAAA 0.982614 -111 * * ****** * * Masking position 11 Map Score: 24.807 Number of sites scoring better than the average of aligned sites = 273 Number in coding regions = 171 Number in noncoding regions = 102 Number of orfs with sites within 600 bp upstream = 112 Fraction of orfs with sites within 600 bp upstream = 0.0179891 Motif number 2 TTTTTATAGGTTTCGTCTTTTTTCAGCGTTCCT 1 69 0 TTTCCTTTTT 0.923205 -232 CCGGTGCGGATATCAACTTGTTTCTGATCAGTT 1 108 0 TATCCTTTTT 0.709279 -193 TAAGATGACTTTTCTTCCTTTTTATTTACAATC 1 228 0 TTTCCCTTTT 0.763443 -73 TCTATTTTTTCCTCCTTTATGTTACCAC 2 155 0 TTTTCTCTTT 0.976666 -18 TCACTCAGCCTTTTGTATCATTTGAAACTTATT 3 17 0 TTTTATCTTT 0.905657 -151 AAAGCAATATTTTTATCATTTTTTTGCAAAATA 3 67 0 TTTTCATTTT 0.798954 -101 TATTGCTTTTTTTGACAACTTTTTTAGGGCTTT 3 91 1 TTTGAACTTT 0.610782 -77 TAAATTCCATTTTGCACACGTTTTGTTAGACGA 3 126 0 TTTGCACTTT 0.872483 -42 ACTTTCACCTCCTCTTGCTATGAAC 4 262 0 TTTCCTCTCT 0.821391 -15 TGATTTTGTATATTCGCTCATTTATGTGCTAAA 7 95 0 TATTCTCTTT 0.894673 -171 TTTTGAAACGTTTTAGCTCATTTCTGATTTTGT 7 119 0 TTTTCTCTTT 0.976666 -147 TCAAAAAAAATTTCCGCCCATTTTTCAAGACAG 7 146 1 TTTCCCCTTT 0.916714 -120 GTCATATTTTCTCCTTTCAAACCAAAC 8 131 0 TATTCTCTTT 0.894673 -17 AGGCCCGTGTTTTTTTATCATTTGTGCGGTTAA 9 26 1 TTTTATCTTT 0.905657 -236 TATATCATTCTTTTATCACTTTTTGTTTATGTT 10 59 1 TTTTCACTTT 0.931288 -74 ACCTATCCATTTTGCCCTTTTTTTGCATCGGTA 11 20 0 TTTGCTTTTT 0.861022 -79 AGTGAGCTTCTTTCTCATTATTTCTTTTTCATA 13 73 0 TTTCATTTTT 0.733845 -228 TGAGATTTTGTTTTTAATCATTTTGTCAGAGTA 13 110 0 TTTTATCTTT 0.905657 -191 AGAGGTCTGTTTTTTGCTCGTATTTCCGCCTTT 14 26 1 TTTTCTCTAT 0.760051 -195 **** *** *** Masking position 3 Map Score: 20.0568 Number of sites scoring better than the average of aligned sites = 1361 Number in coding regions = 1070 Number in noncoding regions = 291 Number of orfs with sites within 600 bp upstream = 315 Fraction of orfs with sites within 600 bp upstream = 0.0505943 Motif number 3 AAAGAAGGAACGCTGAAAAAAGACGAAACC 1 64 1 CGCTGAAAAA 0.899043 -237 ATGAACTCGATCCGAAAAAAGTGATGGCAC 1 188 1 TCCGAAAAAA 0.70724 -113 CATACTCGGACGTGAAGAAAAGTCATCTGG 1 265 0 CGTGAAGAAA 0.416162 -36 GAGGATAATGTGCTGAAAATA 2 2 0 TGCTGAAAAT 0.711412 -171 CACATTATCCTCCTAAGAAAACATGATTTC 2 20 1 TCCTAAGAAA 0.854207 -153 ATAGGAATCACGCCAAGAAAAAATCCGAAT 2 72 1 CGCCAAGAAA 0.867021 -101 TGAAGGGATTTGCCAAGAAAAAAGCGAACG 2 105 0 TGCCAAGAAA 0.913265 -68 TTTTGTATTTTGCAAAAAAATGATAAAAAT 3 62 1 TGCAAAAAAA 0.730161 -106 CTAAAAAAGTTGTCAAAAAAAGCAATATTT 3 88 0 TGTCAAAAAA 0.83143 -80 ACGAATAAAGCCCTAAAAAAGTTGTCAAAA 3 100 0 CCCTAAAAAA 0.825629 -68 TTAACAATCATGTTAAAAAAACAAATGTTA 4 123 0 TGTTAAAAAA 0.826244 -154 GGTTCTAGTATGTTGAGAAAACTAGACAAT 4 200 1 TGTTGAGAAA 0.79819 -77 ACTTGGTTGTTGCTTAAAAAGTGTCGGCAT 4 234 0 TGCTTAAAAA 0.713144 -43 AATTCCTTGCCGTCAAAAAAATAAAGTGAT 5 26 0 CGTCAAAAAA 0.75334 -43 AATCCTTTCTTCTTGAAAATTCCTTGCCGT 5 43 0 TCTTGAAAAT 0.33805 -26 CTCATTTATGTGCTAAAAATACTATCGGGA 7 82 0 TGCTAAAAAT 0.694279 -184 AAAGTATCTGTCTTGAAAAATGGGCGGAAA 7 156 0 TCTTGAAAAA 0.748696 -110 GTACAATCCTCCTTGAAAAATTCTTGTTAT 7 246 0 CCTTGAAAAA 0.648484 -20 TATGCAGGGGTGCCTAGAAACTTTACTTAT 9 137 0 TGCCTAGAAA 0.66396 -125 TGTTTACCGATGCAAAAAAAGGGCAAAATG 11 16 1 TGCAAAAAAA 0.730161 -83 TCCTGCGCTTTCCCGAGAAATACTTTATTT 13 178 0 TCCCGAGAAA 0.868366 -123 TCCTTATTGTTCCCGAAAAAAGCAATTGTT 13 209 1 TCCCGAAAAA 0.895935 -92 ********** Masking position 6 Map Score: 17.0524 Number of sites scoring better than the average of aligned sites = 2520 Number in coding regions = 2173 Number in noncoding regions = 347 Number of orfs with sites within 600 bp upstream = 338 Fraction of orfs with sites within 600 bp upstream = 0.0542885 Motif number 4 CAGCTCTTTAAAAGAAGGAACGCTGAAAAA 1 54 1 AAAGAAGGAA 0.954361 -247 AACGCTGAAAAAAGACGAAACCTATAAAAA 1 72 1 AAAGACGAAA 0.602957 -229 TTGTAAATAAAAAGGAAGAAAAGTCATCTT 1 230 1 AAAGGAAGAA 0.700662 -71 GTGGTAACATAAAGGAGGAAAAAATAGA 2 155 1 AAAGGAGGAA 0.977917 -18 AAGGAATTTTCAAGAAGAAAGGATTTACAA 5 48 1 CAAGAAGAAA 0.884572 -21 ATTAAAAAGAAAAGCAGGAATATAGCAACT 6 38 1 AAAGCAGGAA 0.922127 -162 CGAATATACAAAATCAGAAATGAGCTAAAA 7 112 1 AAATCAGAAA 0.448432 -154 AAGAATTTTTCAAGGAGGATTGTAC 7 251 1 CAAGGAGGAT 0.836283 -15 ATAAGGAATCAAAAGAGGAAGAGTAAACTC 8 20 0 AAAAGAGGAA 0.760618 -128 GAATAATAATCAATAAGGAATCAAAAGAGG 8 32 0 CAATAAGGAA 0.8615 -116 GTTTGGTTTGAAAGGAGAAAATATGAC 8 131 1 AAAGGAGAAA 0.927951 -17 CGAAGAAGAACAAGGAGGCATGCCGGA 9 245 1 CAAGGAGGCA 0.876182 -17 TATAGAGAATCAAGGAGGACGAAAC 12 25 1 CAAGGAGGAC 0.883325 -15 TCCGTGAATACAATAAGAAATAAAGTATTT 13 161 1 CAATAAGAAA 0.644014 -140 TTTTCGGGAACAATAAGGAATCCTGCGCTT 13 198 0 CAATAAGGAA 0.8615 -103 ATTGCTTTGAAAAGGCGGAAATACGAGCAA 14 39 0 AAAGGCGGAA 0.917064 -182 ********** Masking position 3 Map Score: 17.8751 Number of sites scoring better than the average of aligned sites = 998 Number in coding regions = 654 Number in noncoding regions = 344 Number of orfs with sites within 600 bp upstream = 419 Fraction of orfs with sites within 600 bp upstream = 0.0672984 Motif number 5 TCAGTTATGTCTTTTTTATAGGTTTCGTCT 1 84 0 CTTTTTTATA 0.959915 -217 AAAGCCCCTCCAATTTCATACTCGGACGTG 1 281 0 CAATTTCATA 0.730329 -20 AAAAACTCAGCTTTTTTGTATTTTGCAAAA 3 49 1 CTTTTTTGTA 0.833169 -119 TCCTGCTTTTCTTTTTAATATTTTTATAAA 6 27 0 CTTTTTAATA 0.855236 -173 GTCTAGTGTGCATTTTTATAAATAAAATAT 9 193 0 CATTTTTATA 0.869396 -69 CCCCAAGTCTCTTTTTTATATTGATATATC 10 35 1 CTTTTTTATA 0.959915 -98 ATGTATCACTCTCTTTTATAAATCTCCCCC 11 78 0 CTCTTTTATA 0.864139 -21 CCTTGATTCTCTATATCATACAGTTTCGA 12 10 0 CTATATCATA 0.578213 -30 CTCATTATTTCTTTTTCATACAACGGGCTG 13 63 0 CTTTTTCATA 0.968583 -238 ATGTTCCTTTCTTTTGCATATTGGGCAGTA 14 110 0 CTTTTGCATA 0.865403 -111 ********** Masking position 4 Map Score: 5.70596 Number of sites scoring better than the average of aligned sites = 350 Number in coding regions = 275 Number in noncoding regions = 75 Number of orfs with sites within 600 bp upstream = 83 Fraction of orfs with sites within 600 bp upstream = 0.0133312 Motif number 6 GTAAGGTTCTTTCATATGAACTCGATCCGAA 1 173 1 TTCATAGAAC 0.764086 -128 AGCCTTTTGTATCATTTGAAACTTATTTTAT 3 13 0 ATCATTGAAA 0.670075 -155 ATGTTACAACTTCATTGTAAATGTGTCGGAA 4 98 0 TTCATTTAAA 0.930141 -179 CGGGCTACCTTCCATTTTTACTATATTCACT 6 72 0 TCCATTTTAC 0.807877 -128 TAAGTGAGTGTTCATTAGAACAATCATTATT 6 151 0 TTCATTGAAC 0.958363 -49 CACTCACTTATCCATTGTAAAACTAAGGGGG 6 172 1 TCCATTTAAA 0.904632 -28 ACTTCCACCCTTCAGTATAAAGGTTATTGAA 8 102 0 TTCAGTTAAA 0.734384 -46 GATTATTTAGTTCATTTTTAACCGCACAAAT 9 45 0 TTCATTTTAA 0.787355 -217 TTTTCCAACCTTCATTATAACATAAACAAAA 10 79 0 TTCATTTAAC 0.955006 -54 GAAAGGAACATCCATTTGAACGAACAAGAAA 14 129 1 TCCATTGAAC 0.942492 -92 ****** **** Masking position 4 Map Score: 3.73164 Number of sites scoring better than the average of aligned sites = 226 Number in coding regions = 173 Number in noncoding regions = 53 Number of orfs with sites within 600 bp upstream = 60 Fraction of orfs with sites within 600 bp upstream = 0.00963701 Motif number 7 TCAGATTAGGTGCATATCCGGTGCGGATATC 1 127 0 TGCATATCGG 0.92323 -174 CCCCTCCAATTTCATACTCGGACGTGAAGAA 1 276 0 TTCATACCGG 0.953544 -25 AAAAAGCGAACGCATATTCGGATTTTTTCTT 2 86 0 CGCATATCGG 0.882795 -87 GGCAAATCCCTTCAAACAGGGTATAGTATAT 2 121 1 TTCAAACGGG 0.756722 -52 CAAAATGGAATTTATTTTGGGAGGAAAAAAT 3 145 1 TTTATTTGGG 0.633857 -23 TGCGATAAAGTTTATACGCGGCTGAGCACAG 9 103 0 TTTATACCGG 0.915195 -159 TCTGTTCCATTGTATGCAGGGGTGCCTAGAA 9 148 0 TGTATGCGGG 0.944229 -114 TTCGTGTTATCTTATGCTGGGCATTTGTCTA 9 218 0 CTTATGCGGG 0.869271 -44 TATTTCTTATTGTATTCACGGACATGGGGTG 13 152 0 TGTATTCCGG 0.863018 -149 TTGTGGTATACACATGCAGGGTTTGGTATGA 14 73 1 CACATGCGGG 0.757286 -148 TCCTTTCTTTTGCATATTGGGCAGTAGTATT 14 105 0 TGCATATGGG 0.934824 -116 ******* *** Masking position 4 Map Score: 3.02666 Number of sites scoring better than the average of aligned sites = 362 Number in coding regions = 320 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 8 GTTTGTGCCATCACTTTTTTCGGATCGAGT 1 192 0 TCACTTTTTT 0.540895 -109 ATCAGAGAAATCATGTTTTCTTAGGAGGAT 2 26 0 TCATGTTTTC 0.80603 -147 TGATACATTATGATATTTTGATAGGAATCA 2 52 1 TGATATTTTG 0.759876 -121 ACGCATATTCGGATTTTTTCTTGGCGTGAT 2 78 0 GGATTTTTTC 0.650929 -95 ACAAAAAAGCTGAGTTTTTCACTCAGCCTT 3 38 0 TGAGTTTTTC 0.871245 -130 AATATTTTTATCATTTTTTTGCAAAATACA 3 65 0 TCATTTTTTT 0.788546 -103 TCATTTTTTCCTCCCAAAAT 3 158 0 TCATTTTTTC 0.960327 -10 AGGTTGTTTTTCATTTATTGTGATATTTTC 7 52 1 TCATTTATTG 0.539105 -214 TCATTTATTGTGATATTTTCTCCCGATAGT 7 62 1 TGATATTTTC 0.848564 -204 GTCATATTTTCTCCTTTCAAA 8 137 0 TCATATTTTC 0.902195 -11 CATTCTTTTATCACTTTTTGTTTATGTTAT 10 64 1 TCACTTTTTG 0.811988 -69 AGCTTCTTTCTCATTATTTCTTTTTCATAC 13 72 0 TCATTATTTC 0.674393 -229 TTGTTTTTAATCATTTTGTCAGAGTATTAT 13 106 0 TCATTTTGTC 0.754285 -195 GGACAAACCATGAGATTTTGTTTTTAATCA 13 123 0 TGAGATTTTG 0.592879 -178 TCGAAACAATTGCTTTTTTCGGGAACAATA 13 213 0 TGCTTTTTTC 0.650929 -88 ACCTCTCAGTTTTTGAGAGGTCTGT 14 6 1 TCAGTTTTTG 0.862842 -215 ********** Masking position 9 Map Score: 8.09653 Number of sites scoring better than the average of aligned sites = 1337 Number in coding regions = 1119 Number in noncoding regions = 218 Number of orfs with sites within 600 bp upstream = 241 Fraction of orfs with sites within 600 bp upstream = 0.0387086 Motif number 9 AAAAGGAAGAAAAGTCATCTTAATTACCAG 1 239 1 AAAGTCATCT 0.914526 -62 GACGTGAAGAAAAGTCATCTGGTAATTAAG 1 257 0 AAAGTCATCT 0.914526 -44 GTTGTCAAAAAAAGCAATATTTTTATCATT 3 80 0 AAAGCAATAT 0.820234 -88 TGCTATCCAAAAAGCCATCCCCACAATGCT 6 115 0 AAAGCCATCC 0.94477 -85 AAACAAATAAAGCATTCTCAACCTGTTT 7 9 1 AAAGCATTCT 0.840904 -257 GTTCCCGAAAAAAGCAATTGTTTCGACACA 13 217 1 AAAGCAATTG 0.844094 -84 CCGCCTTTTCAAAGCAATCGATTTGTGGTA 14 51 1 AAAGCAATCG 0.952032 -170 GATTCAGGAGAAAGCCATTTTAGTCGGATG 14 161 1 AAAGCCATTT 0.927321 -60 ********** Masking position 3 Map Score: 3.18699 Number of sites scoring better than the average of aligned sites = 306 Number in coding regions = 273 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 10 ATAACTGATCAGAAACAAGTTGATATCCGCA 1 106 1 AGAAACAGTT 0.881315 -195 ATGTATCAGAGAAATCATGTTTTCTTAGGAG 2 29 0 GAAATCAGTT 0.858122 -144 CGACACATTTACAATGAAGTTGTAACATTTG 4 101 1 ACAATGAGTT 0.861603 -176 AAATGGTTTAACAATCATGTTAAAAAAACAA 4 129 0 ACAATCAGTT 0.970003 -148 TTTTTAAGCAACAACCAAGTTCATAGCAAGA 4 244 1 ACAACCAGTT 0.949992 -33 TTTGCATTACGCAAACAGGTTGAGAATGCTT 7 20 0 GCAAACAGTT 0.975068 -246 TTTGCGTAATGCAAACAGGTTGTTTTTCATT 7 36 1 GCAAACAGTT 0.975068 -230 ******* *** Masking position 7 Map Score: 2.04644 Number of sites scoring better than the average of aligned sites = 77 Number in coding regions = 66 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 11 GAGCTGCCACTTCATCGCGCACTCAAATCCA 1 29 0 TTCATCGCCA 0.97159 -272 AATGAGTGTGTTCATCGCCCTTGTCAAGTTT 4 160 0 TTCATCGCCT 0.978037 -117 TAGTTCATTTTTAACCGCACAAATGATAAAA 9 38 0 TTAACCGCCA 0.963321 -224 GCGTATAAACTTTATCGCACTTATAAGTAAA 9 115 1 TTTATCGCCT 0.918087 -147 TGTTTAATCCCTCACTATGTATCA 10 119 0 TTAATCCCCA 0.832964 -14 ACGAAACGTATTACCCGCCCTAAGATACCTG 13 24 0 TTACCCGCCT 0.913216 -277 CTTCACCTCTCTGTTCTCTCTA 13 289 0 TTCACCTCCT 0.892693 -12 ******** ** Masking position 2 Map Score: 0.99054 Number of sites scoring better than the average of aligned sites = 99 Number in coding regions = 90 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 12 TTGGCGATCTTCTTTTGGATG 4 1 1 TTGGCATCTT 0.84457 -276 TCGGAAATACTTGTCAAGCTTGCCATCTTAA 4 73 0 TTGTCAGCTT 0.977768 -204 TTCATCGCCCTTGTCAAGTTTAAATGGTTTA 4 150 0 TTGTCAGTTT 0.976042 -127 GGCATGTACATTGTCTAGTTTTCTCAACATA 4 208 0 TTGTCAGTTT 0.976042 -69 TGCTGGGCATTTGTCTAGTGTGCATTTTTAT 9 204 0 TTGTCAGTGT 0.937093 -58 GGATAGGTGGTTGTCCATGTTGAATGCTATA 11 45 1 TTGTCATGTT 0.889807 -54 ***** ***** Masking position 7 Map Score: 0.802816 Number of sites scoring better than the average of aligned sites = 34 Number in coding regions = 25 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 13 ********** No masking Map Score: 1.57273e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 1.57273e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 1.57273e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0