AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i250_fts_cell_wall_synecho_reg_300.orf -o250_synecho_300.ace -a/home/amcguire/alignace/lib/ORF_synecho.txt -z/skink1/amcguire/genomes/synecho.fna -g0.48 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.48 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 RCY09804 120 Synechocystis #2 RCY32573 300 Synechocystis #3 RCY06805 249 Synechocystis #4 RCY30145 114 Synechocystis #5 RCY33828 162 Synechocystis #6 RCY50530 178 Synechocystis #7 RCY34375 180 Synechocystis #8 RCY13890 300 Synechocystis #9 RCY29867 300 Synechocystis #10 RCY07516 147 Synechocystis #11 RCY07197 190 Synechocystis #12 RCY48903 300 Synechocystis #13 RCY14422 284 Synechocystis #14 RCY11010 269 Synechocystis #15 RCY50049 71 Synechocystis #16 RCY41758 300 Synechocystis #17 RCY40119 90 Synechocystis #18 RCY41993 184 Synechocystis Motif number 1 GAAGAATTTAGTTTTGGGTGGGAGGAGTCCATGGCTC 1 18 0 GTTTGGGGGG 0.914154 -103 TTAGTTAATGGCTCTGAATGGGGTTCGAGATGGACAG 2 137 0 GCTTGAGGGG 0.972114 -164 GCTTTTTCCCTCTATCACGGGAGAATGGCTGGAGTGG 3 23 0 TCTTCAGGAG 0.846872 -227 ACCGCTGGGATTTGTGCTTGGGCGAGGGGATCTCTGT 3 111 1 TTTTGCGGGG 0.97731 -139 TGTTTGAATTACTTTGCCGGGGATAAGTTCCGTGGAG 5 97 1 ACTTGCGGGG 0.934989 -66 CGTGGAGGCTGTTACCCTGGGAAGGCGGGATCGTTTG 5 127 1 GTTCCCGGAG 0.693712 -36 AGCTTAAACTTTTGTGATAGGCTATGCGAGATAAACC 6 122 1 TTTTGAGGCC 0.673478 -57 CTAAGCTTAATTTTTCAGGGGATTGCC 6 162 1 TTTTCAGGAC 0.476274 -17 CCCGGCTTTATCCCTGGGGGGGTTTTGGTTAGTTGGC 7 54 1 TCCTGGGGGG 0.919468 -127 CACCATTTTAGCTTTGAGGGGGATCACCGCCAACTAA 7 82 0 GCTTGAGGGC 0.932337 -99 CTGTCCCGCAACTGTGATGGGCCCAGGCCCTAAGTCA 8 24 0 ACTTGAGGCG 0.639842 -277 GGGAGGAAAATCCATGCTAGGGTTGGGGACTAAGTTT 8 123 0 TCCTGCGGGG 0.970774 -178 TTTCCTCCCTTTTTCCACAGGGGCCTGTGCAGGTAGC 8 151 1 TTTCCAGGGG 0.879991 -150 GTCTATGCCTTCTATCCTAGGCGATCGCCGTCTTAAC 8 270 0 TCTTCCGGCG 0.938313 -31 CTGTTACCAATCTTTCCGAGGATATACGGATAAATAA 9 252 1 TCTTCCGGAC 0.823635 -49 TGTTGGTGTCGCTGTCAATGGGTCGCCCCGTATAATA 10 36 1 GCTTCAGGGC 0.886644 -112 AGTAACACGTTCTCCCCTCGGCTGGGGATATTAGGTC 12 139 1 TCTCCCGGCG 0.906937 -162 AAAGACAATTTCCCCGGCGGGGTTAGGGAACAAACTA 13 211 1 TCCCGGGGGG 0.879735 -74 CTGGGTTTTGTCTATGCCTGGGGGTAGAGTTTTTGCT 14 162 1 TCTTGCGGGG 0.990423 -108 AACAGCGGCTTTTCCGCCTGGGATCTCTACTTTGGAG 16 133 0 TTTCGCGGGC 0.916006 -168 ACGGGGGGACGTTTTGCGAGGAAAATGGCTTTTAGCT 16 206 0 GTTTGCGGAG 0.861645 -95 TAGTCCCCATTTTACGCACGGGGGGACGTTTTGCGAG 16 223 0 TTTCGCGGGC 0.915957 -78 TGTCTAACCATCTTTGGGTGGGTCAGGATTCCTCCGT 18 51 1 TCTTGGGGGG 0.97267 -134 GGATTCCTCCGTTATGCGGGGGATTGGACATTTTGAT 18 76 1 GTTTGCGGGG 0.968719 -109 GATTTGTTACTCCGCCAGCGGGTGGGGTATTTTTTTT 18 110 1 TCCCCAGGGG 0.849731 -75 *** *** *** * Masking position 10 Map Score: 30.2185 Number of sites scoring better than the average of aligned sites = 1755 Number in coding regions = 1594 Number in noncoding regions = 161 Number of orfs with sites within 600 bp upstream = 195 Fraction of orfs with sites within 600 bp upstream = 0.0313203 Motif number 2 CAGGAAAGGCACAGACAAAAAACCCAACAAC 1 95 1 ACAGACAAAA 0.354074 -26 TGGCTGGAGTGGAGGGTAAAAATA 3 4 0 GGAGGGAAAA 0.91646 -246 CTCCCGTGATAGAGGGAAAAAGCTCAGATTC 3 37 1 AGAGGGAAAA 0.825962 -213 GCAACCACAGGGAGAGCAACGCTTCCGAAGC 3 176 0 GGAGAGAACG 0.803544 -74 CAAATTCTTAGGGCGCAAAAGCAACCACAGG 3 196 0 GGGCGCAAAG 0.726835 -54 GGAAGTATTAGGGGAGCAAAATGAGCAAATT 3 221 0 GGGGAGAAAA 0.977261 -29 TGCAGGGGGGAAGTATTAGGGGAG 3 236 0 AGGGGGAAGT 0.787784 -14 GGCCAACGGCAGGGGGCAAGGGGGACATGGG 6 25 1 AGGGGGAAGG 0.937446 -154 ATTGAAAGTTGGGGGCAAAAAGGGAACGCCC 7 134 0 GGGGGCAAAA 0.946251 -47 AGTGGAGGTAACGGGGAAAAGCTGGTGCAAA 8 68 0 ACGGGGAAAG 0.831766 -233 TGCTAGGGTTGGGGACTAAGTTTAGTTGGTT 8 115 0 GGGGACAAGT 0.785623 -186 CTGTGGAAAAAGGGAGGAAAATCCATGCTAG 8 140 0 AGGGAGAAAA 0.94896 -161 TTAGCTGTAGGGGGACAAAAAATTTTACTCC 8 189 1 GGGGACAAAA 0.947301 -112 ACAAGGTTGCCGGGAGTAAAATTTTTTGTCC 8 201 0 CGGGAGAAAA 0.877085 -100 GAAAAATATGGCGGAGGAAAACTGAGTTAGA 9 147 0 GCGGAGAAAA 0.920781 -154 CCAACTGGGAAGGGACGAAGATTTTGCGTTG 11 128 0 AGGGACAAGA 0.864408 -63 GGTTACTCTGGGGGAGGAACTTTCGTGGTTC 12 192 0 GGGGAGAACT 0.795387 -109 TTCAGATAGGCCGGAGCAAAGGGCGGTTGTT 13 127 0 CCGGAGAAAG 0.659575 -158 GCTAAAACAGAGAGGGCAAGACGAAC 14 6 0 AGAGGGAAGA 0.795525 -264 AAACAGCGACGGAGAGAAAGGGAAAAAGATT 14 121 0 GGAGAGAAGG 0.902143 -149 AAAATTAGCGGGACAGGAAGAAACGGTCAAA 15 37 0 GGACAGAAGA 0.580251 -35 TAGAGATCCCAGGCGGAAAAGCCGCTGTTGA 16 141 1 AGGCGGAAAG 0.733479 -160 TGCGTAAAATGGGGACTAAAGTTTTGTCACG 16 242 1 GGGGACAAAG 0.947498 -59 CCACCCGCTGGCGGAGTAACAAATCAAAATG 18 104 0 GCGGAGAACA 0.808706 -81 ****** **** Masking position 8 Map Score: 22.3608 Number of sites scoring better than the average of aligned sites = 4554 Number in coding regions = 3902 Number in noncoding regions = 652 Number of orfs with sites within 600 bp upstream = 539 Fraction of orfs with sites within 600 bp upstream = 0.0865724 Motif number 3 GGGTTCGAGATGGACAGTTTTGCTAGTGCAAA 2 122 0 TGGACAGTTG 0.921261 -179 TAACGGCAATGGGACAGAATTGGGTCTTTGAG 2 228 0 GGGACAGATG 0.97499 -73 TGCAGGGGGGAAGTATTAGGGGAGCAAA 3 232 0 GGGGAAGATA 0.814906 -18 CCGGACAGTTGGTGAAGATTAGTTAAGAAAAT 4 19 1 GGTGAAGTTG 0.904854 -96 CTGGGAAGGCGGGATCGTTTGGGGACGTAG 5 143 1 GGGATCGTTG 0.836012 -20 TCACAGTTGCGGGACAGTATTGGCTTTGCACC 8 44 1 GGGACAGATG 0.97499 -257 TGGAGTTCATGGGAAAGAATAGGAGTGAAAAA 9 172 0 GGGAAAGATG 0.979334 -129 ATGTCAAATAGGGAAAGTTTGGAGTTCATGGG 9 191 0 GGGAAAGTTG 0.990325 -110 CGTATATCCTCGGAAAGATTGGTAACAGACAA 9 248 0 CGGAAAGTTG 0.922804 -53 ATTTGAGTTAGGTAAAGGTTGGTATAAGCTAT 12 261 0 GGTAAAGTTG 0.928323 -40 AAAGCGAACTGGGGCAGATTGAAGAGGATTAT 16 52 1 GGGGCAGTTA 0.886668 -249 TTACGCACGGGGGGACGTTTTGCGAGGAAAAT 16 217 0 GGGGACGTTG 0.959591 -84 GCTGGAAAGGTTTGAAGACTAATG 18 3 1 TGGAAAGTTG 0.934307 -182 ******* ** * Masking position 10 Map Score: 14.7281 Number of sites scoring better than the average of aligned sites = 494 Number in coding regions = 436 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 76 Fraction of orfs with sites within 600 bp upstream = 0.0122069 Motif number 4 CCAATTCTGTCCCATTGCCGTTAAAGTGAAGA 2 237 1 CCCATGCGTT 0.895389 -64 AGAAAATAAACCCTAGGGCGGTGCTTAGAGTC 4 44 1 CCCTGGGGGT 0.988663 -71 GTCCCCCTTGCCCCCTGCCGTTGGCCTGATCT 6 19 0 CCCCTGCGTT 0.80709 -160 CCGGCTTTATCCCTGGGGGGGTTTTGGTTAGT 7 55 1 CCCTGGGGGT 0.988377 -126 CGACATCGATGCCAGGGGCGTTCCCTTTTTGC 7 119 1 GCCAGGGGTT 0.973515 -62 TTGGGTAACAGCCAGTGGAGGTAACGGGGAAA 8 80 0 GCCATGGGGT 0.987875 -221 TTCCACAGGGGCCTGTGCAGGTAGCCTTAGCT 8 163 1 GCCTTGCGGT 0.963431 -138 GATGCAAGCACCCATGGGAGGTGATCTAGATC 9 74 1 CCCAGGGGGT 0.990176 -227 AAGGTTGCTGGCCTTTGGCTGTCGATTTTGCT 11 34 0 GCCTTGGTGT 0.883092 -157 GTAAGGTTTTGCCACTGGGGTTTTTCCAACTG 11 152 0 GCCATGGGTT 0.963015 -39 ACACGTTCTCCCCTCGGCTGGGGATATTAGGT 12 143 1 CCCTGGCGGG 0.849742 -158 CTGCCCCAATGCCAATGGTGGGAATGGGCAAC 13 38 0 GCCATGGGGG 0.956292 -247 ATAGGCCGGAGCAAAGGGCGGTTGTTTGACTG 13 121 0 GCAAGGGGGT 0.866878 -164 AAGACAATTTCCCCGGCGGGGTTAGGGAACAA 13 212 1 CCCCGCGGGT 0.796861 -73 GTTTACCGTGGCCTCTGGGTTTTGTCTATGCC 14 148 1 GCCTTGGTTT 0.706964 -122 **** *** *** Masking position 2 Map Score: 20.9111 Number of sites scoring better than the average of aligned sites = 1404 Number in coding regions = 1282 Number in noncoding regions = 122 Number of orfs with sites within 600 bp upstream = 138 Fraction of orfs with sites within 600 bp upstream = 0.0221651 Motif number 5 TGCTTGGTAAAGGGAGATGAATTGGCAGTT 1 55 0 AGGGAGATGA 0.684562 -66 GGACTACAAAGGTGCGGTGGGTGAATTGTC 2 267 0 GGTGCGGTGG 0.852815 -34 AATAAACCCTAGGGCGGTGCTTAGAGTCCT 4 48 1 AGGGCGGTGC 0.930948 -67 GCCGCTTAAGGGACGTGAGCTAATAACC 5 9 1 AGGGACGTGA 0.926333 -154 GGGATCGTTTGGGGACGTAG 5 153 1 GGGGACGTAG 0.869193 -10 AGGGGGCAAGGGGGACATGGGCATAGATAA 6 35 1 GGGGACATGG 0.880323 -144 CTTTATCCCTGGGGGGGTTTTGGTTAGTTG 7 59 1 GGGGGGGTTT 0.819534 -122 CATCGATGCCAGGGGCGTTCCCTTTTTGCC 7 122 1 AGGGGCGTTC 0.793276 -59 GACAAAATGATGGGGGGTTAACCGACGGTT 8 243 1 TGGGGGGTTA 0.656484 -58 CAAGCACCCATGGGAGGTGATCTAGATCAC 9 78 1 TGGGAGGTGA 0.837805 -223 ATTACTCTATGGGGGCATAGTAACACGTTC 12 121 1 GGGGGCATAG 0.542106 -180 CCGTCACACTGGGGCCCTGCCCCAATGCCA 13 56 0 GGGGCCCTGC 0.720344 -229 GCCGGAGCAAAGGGCGGTTGTTTGACTGTC 13 119 0 AGGGCGGTTG 0.893109 -166 GAATTTCAAAGGGGGGGTGGGAATCTTTTT 14 100 1 GGGGGGGTGG 0.984168 -170 CTCAATTACAGGTGCGGTGAACCGGCAGGT 14 208 1 GGTGCGGTGA 0.783555 -62 TTACGCACGGGGGGACGTTTTGCGAGGAAA 16 219 0 GGGGACGTTT 0.777465 -82 GAATTTCGTCAGGGACGTGACAAAACTTTA 16 258 0 AGGGACGTGA 0.926333 -43 ********** Masking position 8 Map Score: 10.2466 Number of sites scoring better than the average of aligned sites = 2355 Number in coding regions = 2173 Number in noncoding regions = 182 Number of orfs with sites within 600 bp upstream = 201 Fraction of orfs with sites within 600 bp upstream = 0.032284 Motif number 6 AATTCACCCACCGCACCTTTGTAGTCCTAA 2 270 1 CCGCACCTTT 0.973543 -31 AACTAATCTTCACCAACTGTCCGGTAAATC 4 13 0 CACCAACTGT 0.832949 -102 GGCATCGATGTCGCACCATTTTAGCTTTGA 7 102 0 TCGCACCATT 0.769716 -79 CCCTTTTTGCCCCCAACTTTCAATAGTTTT 7 141 1 CCCCAACTTT 0.969824 -40 CAATACTGTCCCGCAACTGTGATGGGCCCA 8 36 0 CCGCAACTGT 0.921449 -265 ATTGGCTTTGCACCAGCTTTTCCCCGTTAC 8 62 1 CACCAGCTTT 0.78196 -239 TCGGTTAACCCCCCATCATTTTGTCTGCCT 8 238 0 CCCCATCATT 0.852061 -63 TTGACAGCGACACCAACATTCCCTTTGGTC 10 24 0 CACCAACATT 0.824372 -124 AGTTGCCCATTCCCACCATTGGCATTGGGG 13 37 1 TCCCACCATT 0.851536 -248 AAGATTCCCACCCCCCCTTTGAAATTCGGG 14 97 0 CCCCCCCTTT 0.922428 -173 TGCCGGTTCACCGCACCTGTAATTGAGCGA 14 205 0 CCGCACCTGT 0.958415 -65 ********** Masking position 10 Map Score: 7.29784 Number of sites scoring better than the average of aligned sites = 797 Number in coding regions = 713 Number in noncoding regions = 84 Number of orfs with sites within 600 bp upstream = 75 Fraction of orfs with sites within 600 bp upstream = 0.0120463 Motif number 7 CCCCTGTTGTTGGGTTTTTTGTCTGTGCCTT 1 100 0 TTGGGTTTTG 0.74508 -21 CAATGTGAATCTGAGCTTTTTCCCTCTATCAC 3 42 0 CTGAGTTTTC 0.882408 -208 CGATAGACCGCTGGGATTTGTGCTTGGGCGAG 3 105 1 CTGGGTTTTG 0.97375 -145 AGGGATAAAGCCGGGATATTTCGGCTCAATTT 7 37 0 CCGGGTATTC 0.951198 -144 TTCATAGAAGCCGGGATTTATCAGCTATGTCG 10 114 1 CCGGGTTTTC 0.98743 -34 ATCAAGGTTGCTGGCCTTTGGCTGTCGATTTT 11 37 0 CTGGCTTTGC 0.874775 -154 AAAATTAGTTCAGGGGTTGATCAATGACGTTT 11 85 0 CAGGGTTGTC 0.867825 -106 GGTTTTGCCACTGGGGTTTTTCCAACTGGGAA 11 148 0 CTGGGTTTTC 0.989609 -43 TTTCCATTGACAGGCATTTCTCCGAAATCACC 12 43 0 CAGGCTTTTC 0.931411 -258 GCCCTTTGCTCCGGCCTATCTGAATTTACGAC 13 134 1 CCGGCTATTG 0.747282 -151 ACCGTGGCCTCTGGGTTTTGTCTATGCCTGGG 14 152 1 CTGGGTTTTC 0.989609 -118 ***** *** ** Masking position 7 Map Score: 9.18463 Number of sites scoring better than the average of aligned sites = 486 Number in coding regions = 440 Number in noncoding regions = 46 Number of orfs with sites within 600 bp upstream = 61 Fraction of orfs with sites within 600 bp upstream = 0.00979762 Motif number 8 TGACGGGAAATATGCTTGGTAAAGGGAGATGAATTGG 1 60 0 TTGGAAAGGA 0.980642 -61 TTTTTCCCTCTATCACGGGAGAATGGCTGGAGTGGAG 3 21 0 TTCGGAAGGC 0.85762 -229 AGGGGATCTCTGTCGTCGTAAAAAGGCTTCAATACCC 3 135 1 TTCGAAAGGC 0.969683 -115 TGTGATAGGCTATGCGAGATAAACCGATCTAAGCTTA 6 134 1 TTGGAAACGA 0.976999 -45 GTTAAACTATCCTGACCAAAGGGAATGTTGGTGT 10 8 1 TTCAAAAGGA 0.699355 -140 TCCCGGCTTCTATGAAAGATAAACGGATTGGCGATCG 10 93 0 TTGGAAAGGA 0.980643 -55 GATATTTAAATCTGTCAGCAAAATCGACAGCCAAAGG 11 18 1 TTGGAAACGA 0.976999 -173 TTGATGCTAGTCTGATGGAGAAAACGTCATTGATCAA 11 64 1 TTGGAAACGT 0.89815 -127 GAGAAATGCCTGTCAATGGAAAAACGCGAAAAACCGT 12 53 1 TTCGAAACGC 0.964052 -248 AGGGCGGTTGTTTGACTGTCAAACCGAGTAAATCCGC 13 102 0 TTGGAAACGA 0.976998 -183 GGGGGGACGTTTTGCGAGGAAAATGGCTTTTAGCTTT 16 204 0 TTGGAAAGGC 0.982106 -97 * ** * *** *** Masking position 12 Map Score: 12.2385 Number of sites scoring better than the average of aligned sites = 58 Number in coding regions = 45 Number in noncoding regions = 13 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 9 AATTTAGTTTTGGGTGGGAGGAGTCCATGGC 1 20 0 TGGTGGGAGG 0.785721 -101 GGAGAATGGCTGGAGTGGAGGGTAAAAATA 3 10 0 TGGGTGGAGG 0.950123 -240 CGGGGATAAGTTCCGTGGAGGCTGTTACCCT 5 114 1 TTCGTGGAGG 0.982057 -49 GGGGTTTTGGTTAGTTGGCGGTGATCCCCCT 7 72 1 TTATTGGCGG 0.741866 -109 TTGCATCACTTACATTGGAGGAGAAATAGAT 9 50 0 TACTTGGAGG 0.948701 -251 AGTGCATAAATTCAGTGGAGAAGTGCGACAA 13 182 1 TTCGTGGAGA 0.827039 -103 TTTGGAGGCTTTCTTTGGATGGAATTTTCCC 16 109 0 TTCTTGGATG 0.897256 -192 CTGGGATCTCTACTTTGGAGGCTTTCTTTGG 16 122 0 TACTTGGAGG 0.948701 -179 AAAGCCGCTGTTGAGTGGAGGTCAATAAAAC 16 158 1 TTGGTGGAGG 0.971132 -143 ATACTCCTTATTAATTGGATGATTGTAAGCT 17 64 0 TTATTGGATG 0.704342 -27 *** ******* Masking position 1 Map Score: 4.34915 Number of sites scoring better than the average of aligned sites = 289 Number in coding regions = 261 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822 Motif number 10 TGTGCTACGAAATTTGCACTAGCAAAACTG 2 110 1 AATTTGCACT 0.664356 -191 TTCTCCTAAAAGTTTCCCCTCAAAGACCCA 2 210 1 AGTTTCCCCT 0.896524 -91 CACATTGACAAATTTGCTCAATATGCCTAG 3 67 1 AATTTGCTCA 0.869344 -183 GCGCCCTAAGAATTTGCTCATTTTGCTCCC 3 211 1 AATTTGCTCA 0.869344 -39 GTTACAGAAAAAATTCCCCTTTTTGTGCTT 6 88 0 AAATTCCCCT 0.713801 -91 TTCAAGACCTAATATCCCCAGCCGAGGGGA 12 151 0 AATATCCCCA 0.826225 -150 CGACAAAGACAATTTCCCCGGCGGGGTTAG 13 207 1 AATTTCCCCG 0.912259 -78 ACCCTAGGTTAGTTTGCCCAGC 15 3 0 AGTTTGCCCA 0.942912 -69 CTATGGTTTTAATTTGCCCAGACCATGAAA 16 24 1 AATTTGCCCA 0.971256 -277 TTTGGATGGAATTTTCCCCACGAGCCAAAT 16 97 0 ATTTTCCCCA 0.858265 -204 ********** Masking position 5 Map Score: 5.03064 Number of sites scoring better than the average of aligned sites = 984 Number in coding regions = 871 Number in noncoding regions = 113 Number of orfs with sites within 600 bp upstream = 125 Fraction of orfs with sites within 600 bp upstream = 0.0200771 Motif number 11 AGAATGGCTGGAGTGGAGGGTAAAAATA 3 9 0 GAGTGGAGGG 0.887411 -241 GGGATAAGTTCCGTGGAGGCTGTTACCCTG 5 116 1 CCGTGGAGGC 0.935094 -47 GGGTAACAGCCAGTGGAGGTAACGGGGAAA 8 80 0 CAGTGGAGGT 0.984947 -221 CCACAGGGGCCTGTGCAGGTAGCCTTAGCT 8 165 1 CTGTGCAGGT 0.846836 -136 GCATCACTTACATTGGAGGAGAAATAGATA 9 49 0 CATTGGAGGA 0.934118 -252 TGCAAGCACCCATGGGAGGTGATCTAGATC 9 76 1 CATGGGAGGT 0.811803 -225 TGCCCAGAGCAGGATTAGTAAGGT 11 177 0 CAGAGCAGGA 0.679306 -14 TGCATAAATTCAGTGGAGAAGTGCGACAAA 13 184 1 CAGTGGAGAA 0.814481 -101 GGGATCTCTACTTTGGAGGCTTTCTTTGGA 16 121 0 CTTTGGAGGC 0.828672 -180 AGCCGCTGTTGAGTGGAGGTCAATAAAACT 16 160 1 GAGTGGAGGT 0.945936 -141 ********** Masking position 7 Map Score: 3.71054 Number of sites scoring better than the average of aligned sites = 605 Number in coding regions = 557 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 12 CCCCTGCCGTTGGCCTGATCTGTAAACGT 6 10 0 TGGCCTGATC 0.897604 -169 TCCTGACTTAGGGCCTGGGCCCATCACAGT 8 21 1 GGGCCTGGGC 0.994917 -280 TTTTCCACAGGGGCCTGTGCAGGTAGCCTT 8 161 1 GGGCCTGTGC 0.974037 -140 CCTGTGCAGGTAGCCTTAGCTGTAGGGGGA 8 174 1 TAGCCTTAGC 0.667221 -127 TTACTAATCCTGCTCTGGGCA 11 180 1 TGCTCTGGGC 0.859895 -11 GTCATTGCTGGAGCCTGGGCAGCCTGTTGG 13 256 0 GAGCCTGGGC 0.978153 -29 TCGCTTTTCATGGTCTGGGCAAATTAAAAC 16 29 0 TGGTCTGGGC 0.973742 -272 GTTGCCACGACGGCCTGAGCTTACAATCAT 17 47 1 CGGCCTGAGC 0.972499 -44 ********** Masking position 6 Map Score: 5.99894 Number of sites scoring better than the average of aligned sites = 705 Number in coding regions = 669 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 44 Fraction of orfs with sites within 600 bp upstream = 0.00706714 Motif number 13 ACAATTCGAGCCATGGACTCCTCCCACC 1 9 1 AGCCATGGAC 0.873289 -112 CCGTCAGGAAAGGCACAGACAAAAAACCCA 1 91 1 AGGCACAGAC 0.94317 -30 AGGGGGACATGGGCATAGATAACAGTGGGA 6 43 1 GGGCATAGAT 0.909711 -136 CTAGGATAGAAGGCATAGACCCCA 8 287 1 AGGCATAGAC 0.981796 -14 ATTTTGCGTTGGCCATAGTCAAAAAATTAG 11 109 0 GGCCATAGTC 0.9225 -82 TACTCTATGGGGGCATAGTAACACGTTCTC 12 123 1 GGGCATAGTA 0.814247 -178 CTCTACCCCCAGGCATAGACAAAACCCAGA 14 161 0 AGGCATAGAC 0.981796 -109 ********** Masking position 5 Map Score: 2.59548 Number of sites scoring better than the average of aligned sites = 260 Number in coding regions = 239 Number in noncoding regions = 21 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 14 CGCCTTCCCAGGGTAACAGCCTCCACGGAA 5 124 0 GGGTAACAGC 0.97661 -39 TTACAGATCAGGCCAACGGCAGGGGGCAAG 6 15 1 GGCCAACGGC 0.966314 -164 TGGTTCCATTGGGTAACAGCCAGTGGAGGT 8 90 0 GGGTAACAGC 0.97661 -211 TGGTGGGAATGGGCAACTGCTCAGTGATAC 13 25 0 GGGCAACTGC 0.966209 -260 CAGGGCCCCAGTGTGACGGCCAGGTTTTGG 13 67 1 GTGTGACGGC 0.915148 -218 GGCCAGGTTTTGGTGACGGCGGATTTACTC 13 84 1 TGGTGACGGC 0.957775 -201 CAGGCCGTCGTGGCAACGGCAAAATTGAAA 17 34 0 TGGCAACGGC 0.976022 -57 ********** Masking position 6 Map Score: 5.36386 Number of sites scoring better than the average of aligned sites = 444 Number in coding regions = 416 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 15 TTCGCTGCATTGATACCATTCTTGGATTCA 2 30 0 TGATACCATT 0.850634 -271 GCTCTCCCTGTGGTTGCTTTTGCGCCCTAA 3 190 1 TGGTTGCTTT 0.825991 -60 TAAGTTTAGTTGGTTCCATTGGGTAACAGC 8 100 0 TGGTTCCATT 0.973554 -201 AATGATCGGTTGGTAGCATTTGTTTCTAGT 12 94 0 TGGTAGCATT 0.950595 -207 GGAACTTTCGTGGTTCCATATCAGGAATTC 12 178 0 TGGTTCCATA 0.900811 -123 GTCTAAGCAATGGTACCATTCTTTTCTGGT 12 220 0 TGGTACCATT 0.973554 -81 ********** Masking position 4 Map Score: 1.7669 Number of sites scoring better than the average of aligned sites = 67 Number in coding regions = 59 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555