AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i293_mixed_hpyl_reg_100.orf -o293_hpyl_100.ace -a/home/amcguire/genomes/ORF_hpyl.txt -z/home/amcguire/genomes/hpyl.fna -g0.39 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.39 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: RHP00877 54 AE000511 Input sequences: #1 RHP01034 89 AE000511 #2 RHP00006 47 AE000511 #3 RHP00008 57 AE000511 #4 RHP00009 51 AE000511 #5 RHP00010 20 AE000511 #6 RHP00013 73 AE000511 #7 RHP00020 81 AE000511 #8 RHP00021 228 AE000511 #9 RHP00114 300 AE000511 #10 RHP00156 41 AE000511 #11 RHP00158 91 AE000511 #12 RHP00160 119 AE000511 #13 RHP00164 146 AE000511 #14 RHP00165 77 AE000511 #15 RHP00169 64 AE000511 #16 RHP00443 128 AE000511 #17 RHP00624 150 AE000511 #18 RHP00873 138 AE000511 Motif number 1 AGCCTTGTTTTAATCCCTTTGTA 1 1 1 AGCTTTTTAA 0.81702 -89 AACTATTTTTAATCAATTTTTAGATAGAATTAT 1 48 0 AACATTTTAG 0.846153 -42 CGTTATAAAATACCTTTTAAACTATTTTTA 1 70 0 AATCTTTTAA 0.950716 -20 TCTGTTAAAATATCCTTTTTAGCGAAACGATG 4 30 0 ATTCTTTTAG 0.816578 -22 AAAAGAGAGAAAGCGTTTTTTAAGGGCTTCATC 8 72 0 AACTTTTTAA 0.903349 -157 GCCTAGCGTCAATCTCTCTTTAAACGCTCCTAA 9 120 0 AACCCTTTAA 0.976293 -181 TTGCCCTTTAATATGCCCTTTAATGAGCGCTGA 9 162 0 ATTCCTTTAA 0.816578 -139 TAAAATCCTTAAACTCATTTTAGGGAATTTTAA 9 278 0 AACCTTTTAG 0.976293 -23 GCCACGCTTTAGCCACGCTTTAGCCGTGCTTTT 12 28 0 AGCCCTTTAG 0.93779 -92 CCGAATTTTCTGACGCATTTTAACAAAAAAAAA 12 84 0 TGCCTTTTAA 0.764108 -36 TAAAATTAACCTTTAATTTTTGAGAG 13 4 1 AATACTTTAA 0.663764 -143 GCTTAATTTTAAGCACGTTTTAGTATGATAACT 13 45 0 AACCTTTTAG 0.976293 -102 TGTTTAAGAAAATCGCTTTTTAATGCAAATAAA 13 83 1 AACCTTTTAA 0.981733 -64 TCATTGCCTTAAATTCTTTTTAAATCATGGCAT 13 124 0 AATCTTTTAA 0.950716 -23 AAAATTCAAAAGCCTTTTTTTAGGTAAATATAG 14 18 1 AGCTTTTTAG 0.773822 -60 CAATTGATTTTAATTCATTTTAGGGAGTGTAAG 15 40 1 TATCTTTTAG 0.650935 -25 ACCCTCTCCGTTTTAATAGCGTTATT 17 4 1 CTTCTTTTAA 0.531359 -147 AAAGGGCTTGAAACTCATTTTAATAGCGCCCAA 17 36 0 AACCTTTTAA 0.981733 -115 ATTATAGTGTATACTAGCTTTAAGAATGCCATT 17 88 0 ATCACTTTAA 0.623568 -63 TTTTATCAAACAACGCTTTTTAAGAGTGGCTCA 18 64 0 CACCTTTTAA 0.912954 -75 CTCTCTTTAAAATTTTACTTTAAGATACCATAT 18 107 0 AATTCTTTAA 0.719928 -32 TTTTTAAAACTCTCTTTAAAATTTTACTT 18 120 0 AACCCTTTAA 0.976293 -19 ** * * ****** Masking position 9 Map Score: 30.5538 Number of sites scoring better than the average of aligned sites = 1031 Number in coding regions = 846 Number in noncoding regions = 185 Number of orfs with sites within 600 bp upstream = 142 Fraction of orfs with sites within 600 bp upstream = 0.0228076 Motif number 2 TAAAAATTGATTAAAAATAGTTTAAAAGGTATTTT 1 59 1 TTAAATTTAA 0.561035 -31 CCTTTTTTAATTTCATATCTTTCAAGAATTGTATT 2 16 0 TTTAATTCAA 0.877101 -32 TTTGATTTCCTTTAATATAACGGAT 3 43 0 TTTATTTTAA 0.972935 -15 CAAACTAGGTTTTTATTCCATTAAACGCATGATT 6 10 1 TTTTTTTTAA 0.861872 -64 AATAATAGGATTTTAATTATATAAAGGACAA 6 53 1 TTTATTTAAA 0.792598 -21 TCAAGAATGATTTGACTTTGATTATAAAATCTTAA 7 43 0 TTTATTTTAT 0.85302 -39 ATTTTGCGTTTTTTCATTTTTTTAATCCTCATTTG 9 192 0 TTTCTTTTAA 0.839813 -109 TATCTTATAATTTGACTTCGTTTCATCAAAGATTT 9 236 0 TTTATTTTCA 0.829875 -65 TTTAGGGAATTTTAACATGCCTTATCTTATAATTT 9 258 0 TTTAATTTAT 0.731529 -43 GTAAGCGGTGTTTTAAATCTTTTAAAGGAAAGGCG 11 67 1 TTTAATTTAA 0.944067 -25 GTTTGCGTTTTTTTTTTTTTGTTAAAATGCGTCAG 12 73 1 TTTTTTTTAA 0.861866 -47 TATGATAACTTTTAAATTCTCTCAAAAATTAAAGG 13 20 0 TTTATTTCAA 0.938274 -127 CATTTTAGCATTTTATTTGCATTAAAAAGCGATTT 13 92 0 TTTATTTTAA 0.972938 -55 AAAAAAGGCTTTTGAATTTTCTTAAAA 14 3 0 TTTATTTTAA 0.972937 -75 CTACAATTGATTTTAATTCATTTTAGGGAGTGTAA 15 37 1 TTTATTTTTA 0.766968 -28 CATCAAGGGGTTTGACATTAGTCAAGCGGTAGTTT 16 11 1 TTTAATTCAA 0.8771 -118 *** * ** **** Masking position 8 Map Score: 18.7532 Number of sites scoring better than the average of aligned sites = 190 Number in coding regions = 138 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 3 AAACGCTATAATAAATCAAAA 3 1 1 AAACGCTAAA 0.770488 -57 TTATTCCATTAAACGCATGATTTTTGCTACA 6 23 1 AAACGCATAT 0.905922 -51 CTTTGTCTTTAATGGCTTCATTGAGCGTCAT 8 12 0 AATGGCTTAT 0.761335 -217 AAATCGTAGAAATCGCTAACTGCGATGAAGC 8 49 1 AATCGCTACT 0.905586 -180 AGCGTTTTTTAAGGGCTTCATCGCAGTTAGC 8 63 0 AAGGGCTTAT 0.882005 -166 AGCCCTTAAAAAACGCTTTCTCTCTTTTGGT 8 77 1 AAACGCTTCT 0.968889 -152 GGTTAAAATCAACCGCATTCAAGTGGCTTTA 8 167 1 AACCGCATCA 0.697534 -62 ACGCTAGGCAAAGCGCTATCAGCGCTCATTA 9 144 1 AAGCGCTACA 0.906499 -157 GCGCTCATTAAAGGGCATATTAAAGGGCAAA 9 165 1 AAGGGCATTT 0.789536 -136 AAAAATGAAAAAACGCAAAATTCTAGCCTTA 9 206 1 AAACGCAAAT 0.851152 -95 AAGCGCAACCCATTCAGCATG 10 1 1 AAGCGCAACC 0.827391 -41 AATCTGTGTTAAACGCATGCTGAATGGGTTG 10 16 0 AAACGCATCT 0.958128 -26 GCCAACGCTAAAACGCTTGCTAGTTTTTGGC 11 34 1 AAACGCTTCT 0.968889 -58 AAAAAAAAAAAAACGCAAACCCCCACGCTCC 12 62 0 AAACGCAACC 0.79774 -58 TGTTTAAGAAAATCGCTTTTTAATGCAAATA 13 83 1 AATCGCTTTT 0.822786 -64 AAACAAACGCTTTTAGTTTGGGTGC 15 5 1 AAACGCTTTA 0.7943 -60 ATTAAGAAAAAAGGGCTTGAAACTCATTTTA 17 47 0 AAGGGCTTAA 0.763278 -104 TTTTGATTTTAATGGCATTCTTAAAGCTAGT 17 78 1 AATGGCATCT 0.847782 -73 AGAGTGGCTCAAGGGCTAATTGGATAGAATA 18 44 0 AAGGGCTATT 0.751978 -95 ******** ** Masking position 2 Map Score: 21.5282 Number of sites scoring better than the average of aligned sites = 1364 Number in coding regions = 1207 Number in noncoding regions = 157 Number of orfs with sites within 600 bp upstream = 106 Fraction of orfs with sites within 600 bp upstream = 0.0170254 Motif number 4 TATAATAAATCAAAATTCTACAACCAATCC 3 17 1 CAAAATTCTA 0.798506 -41 TTTAATGGAATAAAAACCTAGTTTG 6 6 0 TAAAAACCTA 0.927283 -68 TTTATATAATTAAAATCCTATTATTGTAGC 6 48 0 TAAAATCCTA 0.972782 -26 ACTTTGATTATAAAATCTTAATTTTACTAT 7 34 0 TAAAATCTTA 0.850811 -48 TGAAAAAACGCAAAATTCTAGCCTTAAATC 9 211 1 CAAAATTCTA 0.798506 -90 AATTCTAGCCTTAAATCTTTGATGAAACGA 9 224 1 TTAAATCTTT 0.76414 -77 TAAAATCCTTAAACTCATTT 9 291 0 TAAAATCCTT 0.962053 -10 AAGCGGTGTTTTAAATCTTTTAAAGGAAAG 11 69 1 TTAAATCTTT 0.76414 -23 TTAATGCAAATAAAATGCTAAAATGCCATG 13 102 1 TAAAATGCTA 0.850087 -45 TCATTGCCTTAAATTCTTTTTAAATCAT 13 129 0 TTAAATTCTT 0.724502 -18 AGGGGTAAGATAAAAACTTATGCTATAATG 16 73 1 TAAAAACTTA 0.83301 -56 ATCGTCATAAAAACCTTGTTCTAATAG 18 8 1 TAAAAACCTT 0.890776 -131 TATCTTAAAGTAAAATTTTAAAGAGAGTTT 18 113 1 TAAAATTTTA 0.486543 -26 ********** Masking position 5 Map Score: 12.2436 Number of sites scoring better than the average of aligned sites = 746 Number in coding regions = 622 Number in noncoding regions = 124 Number of orfs with sites within 600 bp upstream = 129 Fraction of orfs with sites within 600 bp upstream = 0.0207196 Motif number 5 GAAGCCCTTAAAAAACGCTTTCTCTCTTTT 8 75 1 AAAAACGCTT 0.880559 -154 CCATGAAAAAAGCCACGCTTTCGGTTAAAA 8 145 1 AGCCACGCTT 0.995721 -84 AACAGCTTGTAACCACCCTTAATGTCATCG 9 82 0 AACCACCCTT 0.956498 -219 AAAGATTTAAAACACCGCTTACTAGCCAAA 11 59 0 AACACCGCTT 0.919151 -33 GCCACGCTTTAGCCGTGCTTTTAGCCTTAT 12 20 0 AGCCGTGCTT 0.951527 -100 GCCACGCTTTAGCCACGCTTTAGCCGTGCT 12 31 0 AGCCACGCTT 0.995721 -89 CCCACGCTCCAGCCACGCTTTAGCCACGCT 12 42 0 AGCCACGCTT 0.995721 -78 TATCATACTAAAACGTGCTTAAAATTAAGC 13 48 1 AAACGTGCTT 0.650251 -99 TTAGCCCTTGAGCCACTCTTAAAAAGCGTT 18 56 1 AGCCACTCTT 0.959531 -83 ATTTTTATCAAACAACGCTTTTTAAGAGTG 18 69 0 AACAACGCTT 0.97666 -70 ********** Masking position 9 Map Score: 16.9225 Number of sites scoring better than the average of aligned sites = 262 Number in coding regions = 244 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 6 TAGTTTAAAAGGTATTTTATAACG 1 76 1 GGTATTTTAT 0.874382 -14 CGCTAAAAAGGATATTTTAACAGA 4 38 1 GATATTTTAA 0.765164 -14 CTACAATAATAGGATTTTAATTATATAAAG 6 49 1 AGGATTTTAA 0.7454 -25 TGTGCTTCATGGGATCTTAAAGCCACTTGA 8 185 0 GGGATCTTAA 0.933956 -44 CTCATTAAAGGGCATATTAAAGGGCAAATG 9 168 1 GGCATATTAA 0.838307 -133 CTCATTTTAGGGAATTTTAACATGCCTTAT 9 268 0 GGAATTTTAA 0.911269 -33 TGGCGCATTCGGTATTTTAACACAAAT 11 8 0 GGTATTTTAA 0.980186 -84 GCTAGTAAGCGGTGTTTTAAATCTTTTAAA 11 63 1 GGTGTTTTAA 0.886394 -29 AATTTTCTGACGCATTTTAACAAAAAAAAA 12 84 0 CGCATTTTAA 0.812708 -36 TTTAAATCATGGCATTTTAGCATTTTATTT 13 109 0 GGCATTTTAG 0.958003 -38 CGTTCTTAGGGGGATTTAAGGGGTAAGATA 16 55 1 GGGATTTAAG 0.708243 -74 TGATTAAGATGGTATTATAGTGTATACTAG 17 104 0 GGTATTATAG 0.746387 -47 CTCATTATATGGTATCTTAAAGTAAAATTT 18 101 1 GGTATCTTAA 0.944887 -38 ********** Masking position 9 Map Score: 9.44734 Number of sites scoring better than the average of aligned sites = 429 Number in coding regions = 349 Number in noncoding regions = 80 Number of orfs with sites within 600 bp upstream = 70 Fraction of orfs with sites within 600 bp upstream = 0.0112432 Motif number 7 AGCCTTGTTTTAATCCCTTTG 1 2 1 GCCTTGTTTT 0.908759 -88 TGGCTTTATTTGTTATAAAATT 7 3 1 GCTTTATTTG 0.911769 -79 GATTATAAAATCTTAATTTTACTATAAATT 7 29 0 TCTTAATTTT 0.598945 -53 GGGGTTCAATGCATTCTTTTGCATTATTCC 8 117 1 GCATTCTTTT 0.56715 -112 ACGCTTTCTTTGATGACAAGGT 8 217 0 GCTTTCTTTG 0.765521 -12 ATTTTAACATGCCTTATCTTATAATTTGAC 9 255 0 GCCTTATCTT 0.696512 -46 GTTGGCGCATTCGGTATTTTAACACAAAT 11 10 0 TCGGTATTTT 0.742533 -82 TGGCTAGTAAGCGGTGTTTTAAATCTTTTA 11 61 1 GCGGTGTTTT 0.884148 -31 GTGGGGGTTTGCGTTTTTTTTTTTTTGTTA 12 67 1 GCGTTTTTTT 0.915749 -53 TTGCCCTCATGCCGAATTTTCTGACGCATT 12 98 0 GCCGAATTTT 0.78195 -22 AAAAATTAAAGGTTAATTTTA 13 2 0 GGTTAATTTT 0.359715 -145 AAACAATAAGGCTTAATTTTAAGCACGTTT 13 58 0 GCTTAATTTT 0.895699 -89 AAATTCAAAAGCCTTTTTTTAGGTAAATAT 14 19 1 GCCTTTTTTT 0.863651 -59 CAAACTAAAAGCGTTTGTTT 15 1 0 GCGTTTGTTT 0.691706 -64 CATTAGTCAAGCGGTAGTTTCTTGTGATTC 16 26 1 GCGGTAGTTT 0.773922 -103 CGTTTTAATAGCGTTATTTGGGCGCTATTA 17 19 1 GCGTTATTTG 0.943129 -132 AGCCCTTTTTTCTTAATTTTTGATTTTAAT 17 61 1 TCTTAATTTT 0.598945 -90 AGGTCTTTATTTTAGCTCTTTCT 17 138 0 TCTTTATTTT 0.800981 -13 CTCTTAAAAAGCGTTGTTTGATAAAAATGG 18 71 1 GCGTTGTTTG 0.884148 -68 ********** Masking position 9 Map Score: 12.5781 Number of sites scoring better than the average of aligned sites = 1829 Number in coding regions = 1609 Number in noncoding regions = 220 Number of orfs with sites within 600 bp upstream = 155 Fraction of orfs with sites within 600 bp upstream = 0.0248956 Motif number 8 ATGTAAAATTTGGCATAATTCTATCTAAAA 1 34 1 TGGCATAATT 0.954498 -56 TGGCTTTATTTGTTATAAAA 7 1 1 TGGCTTTATT 0.976448 -81 TTGTCTTTAATGGCTTCATTGAGCGTCATT 8 11 0 TGGCTTCATT 0.938117 -218 ATGCATTCTTTTGCATTATTCCATGAAAAA 8 125 1 TTGCATTATT 0.767391 -104 ACCGAAAGCGTGGCTTTTTTCATGGAATAA 8 140 0 TGGCTTTTTT 0.947468 -89 TTTAGCCTTATGGCTAACTT 12 1 0 TGGCTAACTT 0.732728 -119 TTAAACAATAAGGCTTAATTTTAAGCACGT 13 60 0 AGGCTTAATT 0.802921 -87 TTTTAAATCATGGCATTTTAGCATTTTATT 13 110 0 TGGCATTTTA 0.697684 -37 TTGATTTTAATGGCATTCTTAAAGCTAGTA 17 80 1 TGGCATTCTT 0.957707 -71 ********** Masking position 9 Map Score: 4.86199 Number of sites scoring better than the average of aligned sites = 306 Number in coding regions = 279 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 9 TTTGATTTCCTTTAATATAACGGA 3 44 0 GATTTCCTTA 0.697568 -14 AAACTCTCCTTGATAAAAGA 5 8 0 ACTCTCCTTA 0.858956 -13 TAACTGCGATGAAGCCCTTAAAAAACGCTTT 8 65 1 GAAGCCCTTA 0.82265 -164 AGAATGCATTGAACCCCTTCATGGATACCAA 8 103 0 GAACCCCTTA 0.960204 -126 AGGCATGTTAAAATTCCCTAAAATGAGTTTA 9 271 1 AAATTCCCTA 0.885728 -30 TAAAATCCTTAAACTCATTTTA 9 289 0 AAAATCCTTA 0.802262 -12 GATCAAACTCCCTAAAAACGATTGC 14 63 0 AAACTCCCTA 0.971337 -15 CGCTTACACTCCCTAAAATGAATTAA 15 49 0 ACACTCCCTA 0.935779 -16 GACTAATGTCAAACCCCTTGATG 16 3 0 AAACCCCTTA 0.971337 -126 TTACCCCTTAAATCCCCCTAAGAACGAATCA 16 50 0 AATCCCCCTA 0.943261 -79 ********* * Masking position 9 Map Score: 6.34193 Number of sites scoring better than the average of aligned sites = 399 Number in coding regions = 323 Number in noncoding regions = 76 Number of orfs with sites within 600 bp upstream = 73 Fraction of orfs with sites within 600 bp upstream = 0.011725 Motif number 10 AAACGCTATAATAAATCAAAAT 3 3 1 ACGCTATAAT 0.380002 -55 AAAACTCTACTCTTTCAAGAATGATTTG 7 64 0 ACTCTTTCAA 0.795647 -18 AGCGATTTCTACGATTTCATAAACTTTGTC 8 36 0 ACGATTTCAT 0.668725 -193 CCCTTAAAAAACGCTTTCTCTCTTTTGGTA 8 79 1 ACGCTTTCTC 0.884561 -150 GAAAAAAGCCACGCTTTCGGTTAAAATCAA 8 149 1 ACGCTTTCGG 0.8775 -80 ACGCTTTCTTTGATGACAAG 8 219 0 ACGCTTTCTT 0.944453 -10 CGCCCTGCTCACGCTTTTAGTTTTAGCCCC 9 54 0 ACGCTTTTAG 0.943674 -247 GCTAGGCAAAGCGCTATCAGCGCTCATTAA 9 146 1 GCGCTATCAG 0.813132 -155 CAACGCTAAAACGCTTGCTAGTTTTTGGCT 11 36 1 ACGCTTGCTA 0.884432 -56 GAATTTTCTGACGCATTTTAACAAAAAAAA 12 85 0 ACGCATTTTA 0.562233 -35 TTTAAGAAAATCGCTTTTTAATGCAAATAA 13 85 1 TCGCTTTTTA 0.611469 -62 CTCCCTAAAAACGATTGCAATAAAGTCTAT 14 51 0 ACGATTGCAA 0.476021 -27 AAACAAACGCTTTTAGTTTGGGTGCG 15 7 1 ACGCTTTTAG 0.943674 -58 CGCCCAAATAACGCTATTAAAACGGAGAGG 17 13 0 ACGCTATTAA 0.868327 -138 CGTTATTTGGGCGCTATTAAAATGAGTTTC 17 30 1 GCGCTATTAA 0.720572 -121 CTTTATTTTAGCTCTTTCTTGTTTGATTAA 17 127 0 GCTCTTTCTT 0.382723 -24 TTATCAAACAACGCTTTTTAAGAGTGGCTC 18 65 0 ACGCTTTTTA 0.941143 -74 ********** Masking position 2 Map Score: 10.2788 Number of sites scoring better than the average of aligned sites = 2074 Number in coding regions = 1933 Number in noncoding regions = 141 Number of orfs with sites within 600 bp upstream = 94 Fraction of orfs with sites within 600 bp upstream = 0.015098 Motif number 11 AGCGTTTAAAGAGAGATTGACGCTAGGCAA 9 125 1 GAGAGATTGA 0.897116 -176 ACTCATTTTAGGGAATTTTAACATGCCTTA 9 269 0 GGGAATTTTA 0.821889 -32 GCTGGAGCGTGGGGGTTTGCGTTTTTTTTT 12 59 1 GGGGGTTTGC 0.964667 -61 ATCGTTTTTAGGGAGTTTGATC 14 66 1 GGGAGTTTGA 0.986573 -12 CATCAAGGGGTTTGACATTAGTCAA 16 6 1 AGGGGTTTGA 0.920058 -123 TTCGTTCTTAGGGGGATTTAAGGGGTAAGA 16 53 1 GGGGGATTTA 0.949211 -76 AAATTTTAAAGAGAGTTTTAAAAA 18 125 1 GAGAGTTTTA 0.906584 -14 ********** Masking position 7 Map Score: 3.67306 Number of sites scoring better than the average of aligned sites = 426 Number in coding regions = 362 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 12 TTAGATAGAATTATGCCAAATTTTACATTACA 1 30 0 TTATGCCATT 0.961987 -60 AACGATGTAATTATACTACATTAGGT 4 5 0 TTATACTATT 0.67303 -47 AACGCATGATTTTTGCTACAATAATAGGATTT 6 34 1 TTTTGCTAAT 0.698935 -40 CAATGCATTCTTTTGCATTATTCCATGAAAAA 8 123 1 TTTTGCAATT 0.697729 -106 TTTCATTTTTTTAATCCTCATTTGCCCTTTAA 9 184 0 TTAATCCATT 0.811381 -117 TTTTGCCCTCATGCCGAATTTTCTGACGCA 12 100 0 TCATGCCATT 0.940653 -20 GTGCTTAAAATTAAGCCTTATTGTTTAAGAAA 13 62 1 TTAAGCCATT 0.909747 -85 TGCAATAAAGTCTATCTATATTTACCTAAAAA 14 34 0 TCTATCTATT 0.499031 -44 AGATAAAAACTTATGCTATAATGTGGTCTCAT 16 80 1 TTATGCTAAT 0.797467 -49 TAATGTGGTCTCATTCCATATTAAACAAGGAG 16 98 1 TCATTCCATT 0.871202 -31 TTCAAGCCCTTTTTTCTTAATTTTTGATTTTA 17 57 1 TTTTTCTATT 0.799717 -94 ******* *** Masking position 10 Map Score: 1.69441 Number of sites scoring better than the average of aligned sites = 336 Number in coding regions = 294 Number in noncoding regions = 42 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 13 ********** No masking Map Score: 3.94594e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 3.94594e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 3.94594e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0