AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i294_mixed1_mgen_reg_300.orf -o294_mgen_300.ace -a/home/amcguire/alignace/lib/ORF_mgen.txt -z/skink1/amcguire/genomes/mgen.fna -g0.32 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.32 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: RMG00144 20 Mycoplasma RMG05446 16 Mycoplasma Input sequences: #1 RMG01206 300 Mycoplasma #2 RMG01207 33 Mycoplasma #3 RMG00140 134 Mycoplasma #4 RMG00141 210 Mycoplasma #5 RMG01214 289 Mycoplasma #6 RMG02253 110 Mycoplasma #7 RMG01352 300 Mycoplasma #8 RMG00273 137 Mycoplasma #9 RMG02389 24 Mycoplasma #10 RMG03341 101 Mycoplasma #11 RMG04367 23 Mycoplasma #12 RMG05464 46 Mycoplasma #13 RMG04366 28 Mycoplasma #14 RMG04342 161 Mycoplasma #15 RMG04338 167 Mycoplasma #16 RMG05439 300 Mycoplasma #17 RMG01004 115 Mycoplasma Motif number 1 TTAGTTGGAATTTTAGTTAATCATCAAACACTT 1 120 1 TTTTATTTCA 0.795205 -181 ATAACATACTTTTTACTTATTTTAAGTGTTTGA 1 143 0 TTTTATTTTT 0.954352 -158 CTAATAAAGCTTTTAATTTTTTTCTAATTACAg 1 216 0 TTTTATTTTT 0.954352 -85 GGACTCaAAGTTTTAACTATTAGTTTTATTTGT 1 269 1 TTTTACTTAG 0.760873 -32 TAACTATTAGTTTTATTTGTGTTTGAAGC 1 282 1 TTTTATTGTT 0.718208 -19 TTTATCAAATTTTTATCTATTTAATATTTAAGA 4 32 1 TTTTACTTTA 0.924696 -179 AGTCGCAAATTTTTATCAGTTTATTGGTCAAAG 4 66 1 TTTTACATTA 0.78689 -145 TTTCTTAGTTTTTTATTTGCTTAATGGTTAAAA 4 111 1 TTTTATTTTA 0.931787 -100 TTTTACCTTTATTTAATTAATAAACTTCGCCAC 4 154 1 ATTTATTTAA 0.698147 -57 TTGTTAGGAGTTTTAACAAGTTGGTCATATTGT 5 19 0 TTTTACATTG 0.629521 -271 GCTTTCACATTTTTAGTTGTTAGGAGTTTTAAC 5 35 0 TTTTATTTAG 0.779717 -255 TTAAAAACATTTTTATCATTTCACCCCCCCACT 5 102 0 TTTTACATCA 0.512098 -188 TGGAAAAATAATTTAGTAAGTTTAAGAGAATTA 5 145 0 ATTTATATTT 0.654025 -145 TTTCTTGTTATTTTGCTTCATTTTCTTTATCAA 5 216 0 TTTTGTTTTT 0.718208 -74 GTTTTATGGCTTTTAGTTATTATCGAGTTTTAT 6 14 0 TTTTATTTAT 0.921704 -97 GTTTTGTGGTTTTTAGCTTGTTTATAACAATAT 6 51 1 TTTTACTTTT 0.949479 -60 AACGACAATCTTTTAGTTGATAAATACCTTTTA 7 116 0 TTTTATTTAA 0.884947 -185 TAAGCTAGGGTTTTACTTTAGATGTCATCAGTA 10 58 1 TTTTATTGAT 0.589344 -44 TCATCAGTAAATTTATCTTCTTTTATCGAT 10 82 1 ATTTACTTTT 0.849652 -20 ACTTATTAAATTTTAATTCCTATATGCGTGAAG 12 14 0 TTTTATTTAT 0.921704 -33 GTAACTTTATTTTTAACTAATAAAACAGTTTGT 14 14 1 TTTTACTTAA 0.873646 -148 ATCGCCTTTGTTTTGTCTTATTAATAGCAATGA 14 87 0 TTTTGCTTTA 0.599515 -75 GTTATCTTAAATTTATCTGATATTAGCGCTAAA 15 56 0 ATTTACTTAT 0.760886 -112 TTAAGATAACTTTTACTTTCTTTTAAATTAGTT 15 79 1 TTTTATTTTT 0.954352 -89 TTAAATTAGTTTTTAATTATTAAAATATTTTTA 15 101 1 TTTTATTTAA 0.884947 -67 TTTGGTTTTAATTTAGTTAGTTTACCTGAGTCA 16 53 1 ATTTATTTTT 0.862762 -248 CTATTTTCATTTTTAACTTTTTTGATGGTTGCA 16 95 1 TTTTACTTTT 0.949479 -206 TCACTGATAAATTTAATTATTTTTATTCTGCTT 16 182 0 ATTTATTTTT 0.862762 -119 AGAACAATTATTTTAATAATTTTGGTAATTAAT 17 16 1 TTTTATATTT 0.862762 -100 ATAATTTCTTATTTACTATCTTATTAGTAATAT 17 47 1 ATTTATATTA 0.5526 -69 TTCTTTTATTAGCTCTATTTTCGTTG 17 100 0 TTTTATATCT 0.641193 -16 ***** ** *** Masking position 4 Map Score: 36.5865 Number of sites scoring better than the average of aligned sites = 581 Number in coding regions = 465 Number in noncoding regions = 116 Number of orfs with sites within 600 bp upstream = 49 Fraction of orfs with sites within 600 bp upstream = 0.00787022 Motif number 2 CTTTTTACTTATTTTAAGTGTTTGATGATTAAC 1 135 0 ATTTTAGTTT 0.418258 -166 ATCGAACCTAAAATAACATACTTTTTACTTATT 1 155 0 AAATAAATTT 0.606958 -146 ATTAGAAAAAAATTAAAAGCTTTATTAGGAGAG 1 221 1 AATTAAAGTT 0.796281 -80 TCTATTTAATATTTAAGAAAGTCGCAAATTTTT 4 47 1 ATTTAAAATC 0.734228 -164 ACCTTTATTTAATTAATAAACTTCGCCACCCCC 4 158 1 AATTAAAATT 0.943578 -53 TAATGTAGTTATTTAAAAACATTTTTATCATTT 5 114 0 ATTTAAAATT 0.901845 -176 AGTTTAAGAGAATTAATGTAGTTATTTAAAAAC 5 127 0 AATTAAGTTT 0.872461 -163 ATCAACTTGCAATTAATAACTTTTTTCAAATAA 5 188 0 AATTAAAATT 0.943595 -102 AGTCTATTTAAATTTAGATAATTCTTTCTTGTT 5 240 0 AATTTAATTT 0.809537 -50 ATGAGTGCTTAATTTAAATTATTAGTAGTGAAT 8 49 0 AATTTAATTT 0.812509 -89 TTAAAATTTAAAATTATTGTGGTTATAA 10 6 1 ATTTAAATTT 0.925936 -96 AAAAACGCAATTTAACATGCTTT 11 2 0 ATTTAAATTT 0.925953 -22 AGGAATTAAAATTTAATAAGTTTCTAAAAAT 12 26 1 ATTTAAAATT 0.901845 -21 TTTGCATCATTAAATATAATTTAAAGTA 13 9 1 ATTAAAATTT 0.70505 -20 TGTATTTAAAAATTAACAATATCTCACTAAATA 15 13 1 AATTAAAATC 0.834164 -155 TTATGTTCATAATAAAAATATTTTAATAATTAA 15 113 0 AATAAAATTT 0.812875 -55 AACTAAGCAGAATAAAAATAATTAAATTTATCA 16 178 1 AATAAAATTT 0.808226 -123 CAAAACCTTTAATTAATGAAGTTAAGAAGCACT 16 260 0 AATTAAGATT 0.834151 -41 TTACCAAAATTATTAAAATAATTGTTCTTAACT 17 11 0 TATTAAATTT 0.606951 -105 TAATTTTGGTAATTAATAATTTCTTATTTACTA 17 32 1 AATTAAAATC 0.834167 -84 ****** ** ** Masking position 12 Map Score: 16.387 Number of sites scoring better than the average of aligned sites = 210 Number in coding regions = 173 Number in noncoding regions = 37 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 3 GTAATTAGAAAAAAATTAAAAGCTTTATTAGG 1 218 1 AAAAATTAAG 0.82962 -83 CAAACACAAATAAAACTAATAGTTAAAACTTt 1 275 0 TAAAACTAAG 0.655738 -26 AAATTTGATAAAAATCTAAAGCTTTTTTAACT 4 12 0 AAAATCTAAC 0.738737 -199 CGACTTTCTTAAATATTAAATAGATAAAAATT 4 39 0 AAATATTAAA 0.760656 -172 TAAGCAAATAAAAAACTAAGAAAAATTTGCGA 4 102 0 AAAAACTAAA 0.944507 -109 AAATAAAGGTAAAAACTAACGCTTTTTTAACC 4 136 0 AAAAACTAAC 0.923149 -75 TAAAACTCCTAACAACTAAAAATGTGAAAGCA 5 37 1 AACAACTAAA 0.596973 -253 AAGAATTATCTAAATTTAAATAGACTAGAATT 5 247 1 TAAATTTAAA 0.672915 -43 TAGACTAGAATTAAATTAAGACCAAAATGTTG 5 267 1 TTAAATTAAC 0.501317 -23 AGCACCAAGCAAAAATTAAGGACTATAGGTTT 7 252 1 AAAAATTAAA 0.951221 -49 CTGTTTCTATAAAAATAAATCAGGTTT 8 6 0 AAAAATAAAA 0.533808 -132 TACTAATAATTTAAATTAAGCACTCATACTAA 8 55 1 TTAAATTAAA 0.587525 -83 ACTCATACTAATATATTAATCCCTTTAGATTG 8 76 1 ATATATTAAC 0.267693 -62 CAGCTTGAAGTAAAATTAATCCTA 9 11 1 TAAAATTAAC 0.860498 -14 TATAGGAATTAAAATTTAATAAGTTTCTAAAA 12 23 1 AAAATTTAAA 0.821117 -24 TTTGTATTTAAAAATTAACAATATCTCACTA 15 10 1 AAAAATTAAA 0.951221 -158 ATATCTCACTAAATATTAATTAATGTTTAGCG 15 31 1 AAATATTAAA 0.760656 -137 TTTAATAATTAAAAACTAATTTAAAAGAAAGT 15 93 0 AAAAACTAAT 0.609086 -75 TTAAAACCAAAAAAATTAATCCCGTTAGAATT 16 32 0 AAAAATTAAC 0.932262 -269 CAACCATCAAAAAAGTTAAAAATGAAAATAGA 16 94 0 AAAAGTTAAA 0.674037 -207 AAGCTAATGAAAAAACTAATGAAAGCAAATGC 16 125 0 AAAAACTAAA 0.944507 -176 TAATTGCATCTAAAACTAAGCAGAATAAAAAT 16 165 1 TAAAACTAAA 0.884102 -136 TTTTCACTGATAAATTTAATTATTTTTATTCT 16 186 0 TAAATTTAAA 0.672912 -115 ********* * Masking position 8 Map Score: 18.5066 Number of sites scoring better than the average of aligned sites = 507 Number in coding regions = 430 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 47 Fraction of orfs with sites within 600 bp upstream = 0.00754899 Motif number 4 GAAAATAGAGGTTGGGGGAGGTTAA 2 5 0 GTTGGGGGGG 0.996143 -29 GGGAGGGGGAGTTGGAGAAGGAATAACCATT 3 31 0 GTTGGAGAGG 0.975308 -104 AGAAGAAGAAGAAGGGGAGGGGGAGTTGGAG 3 45 0 GAAGGGGAGG 0.929376 -90 GTTAGAAAAAGTGGGGAGTGGGGTAGAAGAG 3 93 0 GTGGGGAGGG 0.966438 -42 TAGAATCGGTGATGGGGGTGGCGAAGTTTAT 4 173 0 GATGGGGGGG 0.987894 -38 TGAAAGCAAAGTTGGGGAAGACAGCCCAATC 5 61 1 GTTGGGGAGA 0.951608 -229 CAGGAAAATAGTGGGGGGGTGAAATGATAAA 5 93 1 GTGGGGGGTG 0.934795 -197 TCAAATAATAGTTCGAAATGGAAAAATAATT 5 165 0 GTTCGAAAGG 0.703178 -125 TAACTGCTGGGTTCGGGATGGTTCCAGGTGT 7 177 0 GTTCGGGAGG 0.983896 -124 ******** ** Masking position 5 Map Score: 9.77068 Number of sites scoring better than the average of aligned sites = 62 Number in coding regions = 29 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 5 GCTAATGAACTTTTTAGTGTC 1 2 0 TTTTTAGTGT 0.757321 -299 CTACTTGCTTTTTTTAGTTGGATGGCAATT 1 72 1 TTTTTAGTTG 0.973564 -229 AATTCACAGCTTTTTAGTTGGAATTTTAGT 1 107 1 TTTTTAGTTG 0.973564 -194 ATTAGTTTTATTTGTGTTTGAAGC 1 287 1 TTTGTGTTTG 0.800226 -14 TTTTCTTAGTTTTTTATTTGCTTAATGGTT 4 110 1 TTTTTATTTG 0.890466 -101 TGCTTTCACATTTTTAGTTGTTAGGAGTTT 5 39 0 TTTTTAGTTG 0.973564 -251 TTGAAAAAAGTTATTAATTGCAAGTTGATA 5 192 1 TTATTAATTG 0.567533 -98 AAACCTTGGTTTTGTGGTTTTTAGCTTGTT 6 43 1 TTTGTGGTTT 0.797251 -68 GCTCGAGGACTTATTGGTTGATAAAAGGTA 7 95 1 TTATTGGTTG 0.882224 -206 AAACGACAATCTTTTAGTTGATAAATACCT 7 120 0 CTTTTAGTTG 0.823642 -181 AAGATTGTCGTTTTTGTTTGGTGCTAATAT 7 137 1 TTTTTGTTTG 0.911061 -164 TAGTCCTTAATTTTTGCTTGGTGCTTACCT 7 247 0 TTTTTGCTTG 0.85732 -54 AATAAAACAGTTTGTAGTGTTTGTAACAGC 14 32 1 TTTGTAGTGT 0.549612 -130 GGGATTAATTTTTTTGGTTTTAATTTAGTT 16 41 1 TTTTTGGTTT 0.909549 -260 ATTTTTAACTTTTTTGATGGTTGCATTTGC 16 103 1 TTTTTGATGG 0.800226 -198 TAGCTTCTTCTTTTTAATTGCATCTAAAAC 16 151 1 TTTTTAATTG 0.890466 -150 ********** Masking position 5 Map Score: 16.8168 Number of sites scoring better than the average of aligned sites = 405 Number in coding regions = 349 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 6 GAGAGGGTAAGGTTCAAAAAGGACTCaAAGT 1 249 1 GGTTAAAAAG 0.977881 -52 TAGTTAAAAAAGCTTTAGATTT 4 2 1 AGTTAAAAAG 0.965183 -209 TTTGCTTAATGGTTAAAAAAGCGTTAGTTTT 4 126 1 GGTTAAAAAG 0.977879 -85 ATTAATTGCAAGTTGATAAAGAAAATGAAGC 5 204 1 AGTTATAAAG 0.926215 -86 AGGACTTATTGGTTGATAAAAGGTATTTATC 7 100 1 GGTTATAAAA 0.690921 -201 ACAATCTTTTAGTTGATAAATACCTTTTATC 7 114 0 AGTTATAAAT 0.58364 -187 AAGGACTATAGGTTTAAAAACCTATGGTCTT 7 269 1 GGTTAAAAAC 0.879644 -32 AGCTTATAAGGGATAAAAAAGAAGTTTATAA 10 33 0 GGATAAAAAG 0.861508 -69 CCATCAAAAAAGTTAAAAATGAAAATAGAAC 16 92 0 AGTTAAAATG 0.795951 -209 CTAAAGCCTAAGTTTAACAAGTGCTTCTTAA 16 241 1 AGTTAACAAG 0.85254 -60 **** ****** Masking position 6 Map Score: 7.56374 Number of sites scoring better than the average of aligned sites = 142 Number in coding regions = 122 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 7 ACTAAAAAAAGCAAGTAGTGCTATTGATAAGAT 1 57 0 GAATAGTGTA 0.930827 -244 CAAATACTcTGTAATTAGAAAAAAATTAAAAGC 1 208 1 GAATAGAAAA 0.854504 -93 TAGTAACAGAAAATAGAGGTTGGGGGAGGTT 2 13 0 GAATAGAGTT 0.930827 -21 GGGTAGAAGAGGAAGTAGAAGTAGTAGAAGAAG 3 71 0 GAATAGAATA 0.976602 -64 AAGTCCTCGAGCAATTAGTATTACTCAGCTCAA 7 74 0 GAATAGTATA 0.949748 -227 GGAGCTAAATGTAGGTAGTAATACTGAGAATAG 7 216 1 GAGTAGTATA 0.797631 -85 CACGCATATAGGAATTAAAATTTAATAAGTTTC 12 17 1 GAATAAAATT 0.765653 -30 TAATTTAAAAGAAAGTAAAAGTTATCTTAAATT 15 76 0 GAATAAAATT 0.765653 -92 AGTTAAAAATGAAAATAGAACTACTATTGACTC 16 80 0 GAATAGAATA 0.976602 -221 TAATGGCAACGAAAATAGAGCTAATAAAAGAA 17 94 1 GAATAGAGTA 0.967446 -22 * ** ***** ** Masking position 7 Map Score: 6.81914 Number of sites scoring better than the average of aligned sites = 37 Number in coding regions = 26 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 3 Fraction of orfs with sites within 600 bp upstream = 0.00048185 Motif number 8 CACTAAAAAGTTCATTAGCCTTGCAATTATC 1 13 1 TTCATTGCCT 0.908516 -288 TTCTTAGTTTTTTATTTGCTTAATGGTTAAA 4 112 1 TTTATTGCTT 0.829054 -99 AATAACTACATTAATTCTCTTAAACTTACTA 5 134 1 TTAATTTCTT 0.679319 -156 GTTATTTTGCTTCATTTTCTTTATCAACTTG 5 212 0 TTCATTTCTT 0.866016 -78 GAATGAGTGTGGAATTTGCGTAATTGGT 14 144 1 GGAATTGCGT 0.804199 -18 GACGTTGTCATGAATTGGCGTTATGTTCATA 15 135 0 TGAATTGCGT 0.905232 -33 CGTTAGAATTTGCATTGGCTTGATAACTACT 16 11 0 TGCATTGCTT 0.983505 -290 TTTTGATGGTTGCATTTGCTTTCATTAGTTT 16 114 1 TGCATTGCTT 0.983505 -187 CATTAGTTTTTTCATTAGCTTCTTCTTTTTA 16 136 1 TTCATTGCTT 0.973951 -165 GTTAAACTTAGGCTTTAGCTTCAAAAATAAT 16 228 0 GGCTTTGCTT 0.782962 -73 ****** **** Masking position 6 Map Score: 5.76701 Number of sites scoring better than the average of aligned sites = 69 Number in coding regions = 62 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 9 TAGTTAAAAAAGCTTTAGATT 4 2 1 AGTTAAAAAA 0.870408 -209 TCTATTTAATATTTAAGAAAGTCGCAAATT 4 47 1 ATTTAAGAAA 0.599614 -164 AATTAAATAAAGGTAAAAACTAACGCTTTT 4 142 0 AGGTAAAAAC 0.895467 -69 TAATGTAGTTATTTAAAAACATTTTTATCA 5 117 0 ATTTAAAAAC 0.790236 -173 GTTATAAACAAGCTAAAAACCACAAAACCA 6 49 0 AGCTAAAAAC 0.823159 -62 CGAACCCAGCAGTTAAGCACAGTGGAGCTA 7 193 1 AGTTAAGCAC 0.966503 -108 TACTGAGAATAGGTAAGCACCAAGCAAAAA 7 237 1 AGGTAAGCAC 0.901142 -64 TAATAATTTAAATTAAGCACTCATACTAAT 8 58 1 AATTAAGCAC 0.800354 -80 AGTTTTAAAGAGTTAAGCAATCTAAAGGGA 8 95 0 AGTTAAGCAA 0.877256 -43 CTGTTTTATTAGTTAAAAATAAAGTTACTT 14 12 0 AGTTAAAAAT 0.824166 -150 ATATTTTAATAATTAAAAACTAATTTAAAA 15 99 0 AATTAAAAAC 0.790241 -69 CCATCAAAAAAGTTAAAAATGAAAATAGAA 16 93 0 AGTTAAAAAT 0.824166 -208 TAATTAATGAAGTTAAGAAGCACTTGTTAA 16 254 0 AGTTAAGAAG 0.863435 -47 AGTTAAGAACAATTATTTTA 17 1 1 AGTTAAGAAC 0.977535 -115 ********** Masking position 5 Map Score: 12.9708 Number of sites scoring better than the average of aligned sites = 89 Number in coding regions = 71 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 10 CCCCCTCCCCTTCTTCTTCTTCTTCTACTA 3 53 1 TTCTTCTTCT 0.967931 -82 CTTCTTCTTCTACTACTTCTACTTCCTCTT 3 68 1 TACTACTTCT 0.731613 -67 CTACTTCTACTTCCTCTTCTACCCCACTCC 3 80 1 TTCCTCTTCT 0.916917 -55 TGTGGTTATAAACTTCTTTTTTATCCCTTA 10 28 1 AACTTCTTTT 0.825484 -74 CAGTAAATTTATCTTCTTTTATCGAT 10 86 1 ATCTTCTTTT 0.915776 -16 TTTCATTAGCTTCTTCTTTTTAATTGCATC 16 145 1 TTCTTCTTTT 0.96153 -156 AATAATTGAGTTCATCTTTTCACTGATAAA 16 204 0 TTCATCTTTT 0.860455 -97 ********** Masking position 7 Map Score: 2.07043 Number of sites scoring better than the average of aligned sites = 88 Number in coding regions = 61 Number in noncoding regions = 27 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 11 TGAACAATATGACCAACTTGTTAAAACTCCTA 5 16 1 GACCAACGTT 0.957834 -274 ATTAAATTAAGACCAAAATGTTGC 5 276 1 GACCAAAGTT 0.964373 -14 AAAACCACAAAACCAAGGTTTTATGGCTTTTA 6 32 0 AACCAAGTTT 0.913723 -79 AGCCGTTATAGACCATGACGTTGATAGGTTAC 7 21 1 GACCATGGTT 0.972096 -280 AACCATCCCGAACCCAGCAGTTAAGCACAGTG 7 185 1 AACCCAGGTT 0.922649 -116 AATAAAAAAAGACCATAGGTTTTTAAACCTAT 7 276 0 GACCATATTT 0.76132 -25 AAGTGAAACCAAGACGTTGTCATGAATT 15 150 0 AACCAAGGTT 0.974765 -18 ******* *** Masking position 2 Map Score: 0.654902 Number of sites scoring better than the average of aligned sites = 37 Number in coding regions = 30 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 12 TTCAAACACAAATAAAACTAATAGTTAAAA 1 279 0 AATAAAACTA 0.694391 -22 AATGAAGCAAAATAACAAGAAAGAATTATC 5 227 1 AATAACAAGA 0.712992 -63 TTAGCTTGTTTATAACAATATTATTGCAGT 6 63 1 TATAACAATA 0.749774 -48 TTAAATAAAAAAAGACCATAGGT 7 288 0 AATAAAAAAA 0.777278 -13 TAACTGTTTCTATAAAAATAAATCAGGTTT 8 11 0 TATAAAAATA 0.866861 -127 GTATTTAAAAATTAACAATATCTCACTAAA 15 14 1 ATTAACAATA 0.573577 -154 TTATGTTCATAATAAAAATATTTTAATAAT 15 116 0 AATAAAAATA 0.939672 -52 AAAAGTTAAAAATGAAAATAGAACTACTAT 16 86 0 AATGAAAATA 0.887174 -215 AGAAGAAGCTAATGAAAAAACTAATGAAAG 16 132 0 AATGAAAAAA 0.637916 -169 TTTAGATGCAATTAAAAAGAAGAAGCTAAT 16 149 0 ATTAAAAAGA 0.503229 -152 AACTAAGCAGAATAAAAATAATTAAATTTA 16 178 1 AATAAAAATA 0.939672 -123 TTTAATACAAAAATATTTCAAAACC 16 286 0 TACAAAAATA 0.653985 -15 TTACCAAAATTATTAAAATAATTGTTCTTA 17 14 0 TATTAAAATA 0.452539 -102 CAATAATGGCAACGAAAATAGAGCTAATAA 17 91 1 AACGAAAATA 0.695347 -25 ********** Masking position 5 Map Score: 5.38994 Number of sites scoring better than the average of aligned sites = 315 Number in coding regions = 256 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 38 Fraction of orfs with sites within 600 bp upstream = 0.00610344 Motif number 13 ********** No masking Map Score: 2.79544e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 2.79544e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 AGTTCATTAGCCTTGCAATTATCACAAAAT 1 21 1 CCTTGCAATT 0.941466 -280 GGATGGCAATTGTTGGAATTCACAGCTTTT 1 91 1 TGTTGGAATT 0.882504 -210 ACAGCTTTTTAGTTGGAATTTTAGTTAATC 1 112 1 AGTTGGAATT 0.948839 -189 TTCTTTATCAACTTGCAATTAATAACTTTT 5 197 0 ACTTGCAATT 0.880513 -93 AAATTAATCCCGTTAGAATTTGCATTGGCT 16 22 0 CGTTAGAATT 0.794761 -279 GCTTAGTTTTAGATGCAATTAAAAAGAAGA 16 156 0 AGATGCAATT 0.836746 -145 GCTCTATTTTCGTTGCCATTATTGCACTAA 17 85 0 CGTTGCCATT 0.9234 -31 ********** Masking position 8 Map Score: 0.00412978 Number of sites scoring better than the average of aligned sites = 55 Number in coding regions = 51 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 1 Fraction of orfs with sites within 600 bp upstream = 0.000160617