AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i071_Tryptophan_Biosynthesis_mjan_reg_300.orf -o071_mjan_300.ace -a/home/amcguire/genomes/ORF_mjan.txt -z/home/amcguire/genomes/mjan.fna -g0.31 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.31 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 RMJ05709 83 M_jannaschii_chromosome #2 RMJ03037 300 M_jannaschii_chromosome #3 RMJ12675 131 M_jannaschii_chromosome #4 RMJ05070 300 M_jannaschii_chromosome #5 RMJ14264 70 M_jannaschii_chromosome #6 RMJ02456 300 M_jannaschii_chromosome #7 RMJ04788 300 M_jannaschii_chromosome #8 RMJ09060 71 M_jannaschii_chromosome #9 RMJ14877 185 M_jannaschii_chromosome #10 RMJ02772 29 M_jannaschii_chromosome #11 RMJ03862 33 M_jannaschii_chromosome #12 RMJ14786 89 M_jannaschii_chromosome #13 RMJ06121 273 M_jannaschii_chromosome #14 RMJ14683 177 M_jannaschii_chromosome #15 RMJ10436 145 M_jannaschii_chromosome Motif number 1 ATAATTAAAGTATTTAAAAATATCTATTAG 1 31 0 TATTTAAAAA 0.604065 -53 TCCAAGTTTATTATAAAAATTCATAATTAA 1 53 0 TTATAAAAAT 0.488436 -31 TTTAGGTATGTAATTAAATTTATTTAAAAA 2 94 1 TAATTAAATT 0.743479 -207 TAATTAAATTTATTTAAAAACCCATTGGGT 2 104 1 TATTTAAAAA 0.604065 -197 TTAATTTATTAATTTAAATAAATGATAGAA 2 217 0 AATTTAAATA 0.507967 -84 TTAAATTAATAAATTAAAAAGAAGGTATTT 2 230 1 AAATTAAAAA 0.930579 -71 AAAAAGAAGGTATTTAAAGAAAATCCCCAA 2 245 1 TATTTAAAGA 0.807656 -56 TTTTTTATTTAATTTAAAAATTGGGGATTT 2 265 0 AATTTAAAAA 0.687057 -36 TTTTTAAATTAAATAAAAAATGAGAGAGGG 2 275 1 AAATAAAAAA 0.899991 -26 GTACAAAAAATAATTAAATAATTTTACATC 3 11 0 TAATTAAATA 0.849706 -121 ACCACAAGCGAAATTAAAGTATGTGTAACT 4 85 1 AAATTAAAGT 0.661049 -216 TACTATACCAAATTTAAATATGTACAAAAA 4 142 1 AATTTAAATA 0.507967 -159 TATGTACAAAAATTTAAAAAATACTTAAAT 4 160 1 AATTTAAAAA 0.687057 -141 AGGTAGGATAAAATAAAATAATAGTATAAG 5 14 0 AAATAAAATA 0.792297 -57 AAAGAATTGCTATTTAAAAAAGGTAGGATA 5 34 0 TATTTAAAAA 0.604065 -37 TTATCACATTTAATAAAAAGAATTGCTATT 5 50 0 TAATAAAAAG 0.717925 -21 AAAGATGATATTATAAAAAACTACAGAAAG 6 57 0 TTATAAAAAA 0.70892 -244 ACAATAATGATAATAAAAAATAATAAAATT 6 210 1 TAATAAAAAA 0.927799 -91 TAATAAAAAATAATAAAATTTACCTCTGCG 6 220 1 TAATAAAATT 0.681126 -81 GCGAAAGTCCTATTTAAATATCACAGGTGA 6 247 1 TATTTAAATA 0.492988 -54 TATATAACTTAAATAAAAATAATAGTTATT 7 20 0 AAATAAAAAT 0.779117 -281 TATTTTTGTTAATTTAAAAATTCAAATTGT 7 193 0 AATTTAAAAA 0.687057 -108 AAATTAACAAAAATAAAATAATGTGAATGA 7 208 1 AAATAAAATA 0.792297 -93 TCAAAATCTTAATTTAAATGGGTATCCCAA 9 112 0 AATTTAAATG 0.489838 -74 GATTTAATGATAATTAAAAAAATAAAA 10 13 1 TAATTAAAAA 0.942969 -17 AAAGGTTAAAAAATTAAAGAAAT 11 4 0 AAATTAAAGA 0.832572 -30 ATTGTTCTTTTATTTAAAATCTGTCCCTCT 13 20 0 TATTTAAAAT 0.596682 -254 ATTAGTGTTAATTTTAAAAAAACAAACATT 13 113 1 ATTTTAAAAA 0.480645 -161 CTGCAAAAAATAATAAAAAATGTTTGTTTT 13 131 0 TAATAAAAAA 0.927799 -143 ATCTCAATCCTAATTAAAAGTTATCGTTGG 13 175 1 TAATTAAAAG 0.801522 -99 TTGGAAAATCTTTTTAAAAATACCAACATT 13 201 1 TTTTTAAAAA 0.473272 -73 ATTGATTTAGAATTAAAAGATGCATTTTTA 13 228 1 AATTAAAAGA 0.729156 -46 ATTAAAAATATATTAAAAATGCATCTTTTA 13 241 0 TATTAAAAAT 0.806236 -33 AAAGATAATATATTAAAAATATATTAAAAA 13 252 0 TATTAAAAAT 0.806236 -22 TTTAACGACTTTATAAAAGAATAATCCATA 14 45 0 TTATAAAAGA 0.459149 -133 AGTAAAGAACTAATAAAAAAGGAATATCAT 14 81 1 TAATAAAAAA 0.927799 -97 AAGTTTTTTAAAATTAAAAATGAATGTAAT 14 142 0 AAATTAAAAA 0.930579 -36 TCAAGTTTAATATTTAAAATTTAATTAAGG 15 87 0 TATTTAAAAT 0.596682 -59 GTTCTAAATTATTAAATTATAACTATAA 15 128 0 TTATTAAATT 0.363213 -18 ********** Masking position 6 Map Score: 48.9911 Number of sites scoring better than the average of aligned sites = 2750 Number in coding regions = 1948 Number in noncoding regions = 802 Number of orfs with sites within 600 bp upstream = 482 Fraction of orfs with sites within 600 bp upstream = 0.0774173 Motif number 2 CCCATTGGGTTTTTATATTTTCCATAGTAAA 2 124 1 TTTTATTTTT 0.956705 -177 AAAATTATTTAATTATTTTTTGTACTAAATT 3 16 1 AATTATTTTT 0.84315 -116 GTACTAAATTTTTAAGATTTTTATAGTAAAA 3 37 1 TTTAAGTTTT 0.926294 -95 TATCCTTTATAATTATGTCTTATATTTTAAT 3 77 1 AATTATTCTT 0.655543 -55 TATTTGCATATTTAAGTATTTTTTAAATTTT 4 168 0 TTTAAGATTT 0.671934 -133 CTCCAATTATATTTATATCTTATAGTATTAT 4 205 0 ATTTATTCTT 0.778085 -96 ATACTTTCCCTTTAAGATTTTGGATTTCTTA 4 247 0 TTTAAGTTTT 0.926294 -54 AGGTAAATTTTATTATTTTTTATTATCATTA 6 214 0 TATTATTTTT 0.923041 -87 GCAATGACACTTTTATAATTTACTGACATAG 6 279 0 TTTTATATTT 0.782668 -22 AAATAATAGTTATTATTTTTTAA 7 3 0 TATTATTTTT 0.923041 -298 CATTTATAGTTATTAGATTTTCTAATATATA 7 44 0 TATTAGTTTT 0.926294 -257 ATAACCAAAGTTTTAGCTTTTGTATAATTGC 7 110 1 TTTTAGTTTT 0.958598 -191 GACACCTAAATTTTATATTTTATCTTATATT 7 276 0 TTTTATTTTT 0.956705 -25 CAGAAGCTAAAATTATCTTTTTGGGGTGTCC 8 48 1 AATTATTTTT 0.843152 -24 ACCCATTTAAATTAAGATTTTGATCAACCTT 9 119 1 ATTAAGTTTT 0.84923 -67 TTTTATTTTTTTAATTATCAT 10 19 0 TTTTATTTTT 0.956705 -11 ATTTCTTTAATTTTTTAACCTTTTGG 11 6 1 TTTAATTTTT 0.923041 -28 ATAATTAGGTATTTATGTTTTTTATTGTGTT 12 30 0 ATTTATTTTT 0.908289 -60 AAACATTTTTTATTATTTTTTGCAGTAGTAA 13 136 1 TATTATTTTT 0.923041 -138 ATTCCTTTTTTATTAGTTCTTTACTACACTC 14 75 0 TATTAGTCTT 0.816488 -103 TTCACTCTGTTTTAAGTTTTTTAAAATTAAA 14 154 0 TTTAAGTTTT 0.926294 -24 TTAAAATTTAATTAAGGTCTTATCACATCAA 15 73 0 ATTAAGTCTT 0.666011 -73 ATAGTTATAATTTAATAATTTAGAAC 15 130 1 TTTAATATTT 0.661556 -16 ****** **** Masking position 3 Map Score: 33.3916 Number of sites scoring better than the average of aligned sites = 1148 Number in coding regions = 800 Number in noncoding regions = 348 Number of orfs with sites within 600 bp upstream = 291 Fraction of orfs with sites within 600 bp upstream = 0.0467395 Motif number 3 TATTAGGTGATAATTTGTTATATAAT 1 2 0 TATTTATAAA 0.688583 -82 CTTCACCTCCAAGTTTATTATAAAAATTCATAATT 1 55 0 AATTTATAAA 0.944157 -29 GGTATGTAATTAAATTTATTTAAAAACCCATTGGG 2 98 1 TATTTTTAAA 0.290194 -203 CATAGTAAATAAGTTTATTTGATGATTGATTGTAG 2 146 1 AATTTTGAGA 0.44144 -155 TGATTGTAGCAGTGTTCTTATAATATCATCTTCAT 2 172 1 AGTTTATATA 0.658117 -129 AAATGATAGAAAAGTTTATATATGAAGATGATATT 2 193 0 AATTTATAGA 0.914941 -108 GAAAATCCCCAATTTTTAAATTAAATAAAAAATGA 2 263 1 AATTAATTAA 0.455299 -38 AAAATCTTAAAAATTTAGTACAAAAAATAATTAAA 3 23 0 AATTTACAAA 0.739241 -109 CTAAATTTTTAAGATTTTTATAGTAAAAGGTGATT 3 40 1 AATTTATATA 0.929061 -92 GTCCCATCCTAACATTAAAATATAAGACATAATTA 3 86 0 AATTAATAAA 0.904945 -46 ATTATACCGAAAAGTTTATATATAAGTTACACATA 4 104 0 AATTTATAAA 0.944157 -197 GTACATATTTAAATTTGGTATAGTATCGATTATAC 4 132 0 AATTTATATA 0.929061 -169 AAATATGCAAATATTTATTATAATACTATAAGATA 4 186 1 ATTTTATATA 0.554459 -115 AAGTATGTTTAAAGTTTCAAGATAAATTGGGGAGT 4 272 1 AATTAAGAAA 0.790928 -29 GAATTTTATGAAAATTGTAATAAGATATGAAAATA 6 14 0 AATTAATAGA 0.858293 -287 CAATTTTCATAAAATTCAAATAGGACTTTCTGTAG 6 32 1 AATTAATAGA 0.858293 -269 GGACTTTCTGTAGTTTTTTATAATATCATCTTTGA 6 54 1 TATTTATATA 0.631274 -247 TCTTTGATAGAACGTTCGTAGACTAAAATTTATCA 6 82 1 AATTTAGATA 0.838818 -219 ATAATTAATTAATATTTGTAGAATATAGCCCTAAC 7 158 0 AATTTAGATA 0.838818 -143 TTATATTAATAATATTCCAACAAAAACCGGATTTA 7 248 0 AATTAACAAA 0.614838 -53 TTTGACACCTAAATTTTATATTTTATCTTATATTA 7 275 0 AATTTATTTA 0.534855 -26 CTGCCCGAACAACCTTTTTAGAAAAGGTTGATCAA 9 138 0 AATTTAGAAA 0.870441 -48 CCACTCCAACTTTTTAGTAAAAGCTGCCCGAA 9 164 0 AATTAGTAAA 0.442269 -22 TTAGAGGGACAGATTTTAAATAAAAGAACAATAGT 13 18 1 AGTTAATAAA 0.583214 -256 TTCCAACGATAACTTTTAATTAGGATTGAGATATA 13 172 0 AATTATTAGA 0.52828 -102 TAAAAATACCAACATTGATTTAGAATTAAAAGATG 13 215 1 AATTTTTAAA 0.757645 -59 TTTTTAATATATTTTTAATATATTATCTTTCA 13 252 1 ATTTTATATA 0.554459 -22 GACCTTAATTAAATTTTAAATATTAAACTTGAATA 15 85 1 AATTAATATA 0.880588 -61 ** ** **** ** Masking position 6 Map Score: 23.6502 Number of sites scoring better than the average of aligned sites = 723 Number in coding regions = 445 Number in noncoding regions = 278 Number of orfs with sites within 600 bp upstream = 244 Fraction of orfs with sites within 600 bp upstream = 0.0391905 Motif number 4 AAATATCTATTAGGTGATAATTTGTTATATA 1 13 0 TAGTGATAAT 0.842681 -71 TTAATTATGAATTTTTATAATAAACTTGGAG 1 53 1 ATTTTATAAT 0.676735 -31 TTTAAATACCTTCTTTTTAATTTATTAATTT 2 232 0 TTTTTTTAAT 0.612228 -69 TATGCAAATATTTATTATAATACTATAAGAT 4 189 1 TTATTATAAT 0.788464 -112 CTTTTTATTAAATGTGATAAT 5 60 1 AAGTGATAAT 0.697918 -11 CTTTCTGTAGTTTTTTATAATATCATCTTTG 6 57 1 TTTTTATAAT 0.82962 -244 GTCCTATACAATAATGATAATAAAAAATAAT 6 203 1 ATATGATAAT 0.830385 -98 ACTTTGGTTATTAATGTTAATTTCTGACTAT 7 90 0 TTATGTTAAT 0.787588 -211 CATTATTTTATTTTTGTTAATTTAAAAATTC 7 200 0 TTTTGTTAAT 0.820406 -101 GTGATTTAATGATAATTAAAAAAATA 10 6 1 TTATGATAAT 0.919475 -24 TTTTAACCTTTTGGTGATAAT 11 23 1 TTGTGATAAT 0.9726 -11 AAGAGTGTTATTGGTGATAAA 12 79 1 TTGTGATAAA 0.842673 -11 TCTAAATCAATTTTTGATAATATGTATAAAA 13 79 0 TTTTGATAAT 0.933596 -195 TTTAGATAAATTAGTGTTAATTTTAAAAAAA 13 104 1 TTGTGTTAAT 0.919974 -170 TAAAATCTTGTTGGTGATAAAA 15 2 0 TTGTGATAAA 0.842673 -144 TTAAACTTGAATAGTTATAATTTATAGTTAT 15 107 1 ATGTTATAAT 0.841061 -39 GTTATAATTTATAGTTATAATTTAATAATTT 15 120 1 ATGTTATAAT 0.841061 -26 ** ******** Masking position 5 Map Score: 17.7227 Number of sites scoring better than the average of aligned sites = 333 Number in coding regions = 259 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 85 Fraction of orfs with sites within 600 bp upstream = 0.0136524 Motif number 5 GCAGTGTTCTTATAATATCATCTTCATATATAAA 2 180 1 TATATATTTT 0.874931 -121 CCCTCTCTCATTTTTTATTTAATTTAAAAATTGG 2 271 0 TTTTTATATT 0.654514 -30 TATTTAAGTATTTTTTAAATTTTTGTACATATTT 4 157 0 TTTTTAATTT 0.731629 -144 ATTATATTTATATCTTATAGTATTATAATAAATA 4 197 0 TATTTATTTT 0.907964 -104 GAGCTTATACTATTATTTTATTTTATCCT 5 6 1 TATCTATTTT 0.650114 -65 AACTATTTTCATATCTTATTACAATTTTCA 6 7 1 TTTATATTTT 0.931729 -294 TGTAGTTTTTTATAATATCATCTTTGATAGAACG 6 62 1 TATATATTTT 0.874931 -239 TTTATTATTTTTTATTATCATTATTGTATAGGAC 6 203 0 TTTTTATTAT 0.806258 -98 TTTTATATTTTATCTTATATTAATAATATTCCAA 7 263 0 TATTTATTAT 0.68077 -38 ATTTCTTTAATTTTTTAACCTTTTGGTGATAAT 11 11 1 TTTTTAATTT 0.731629 -23 GGTATTTATGTTTTTTATTGTGTTTTTAGAAATA 12 20 0 TTTTTATTTT 0.950614 -70 AATAGTTTCTTTTGTTATATCGTTGGGCATAATT 13 47 1 TTTTTATCTT 0.908139 -227 AAAACAAACATTTTTTATTATTTTTTGCAGTAGT 13 131 1 TTTTTATTTT 0.950614 -143 AGTAGTAATGTTTTATATCTCAATCCTAATTAAA 13 159 1 TTTATATCAT 0.602462 -115 AAGATGCATTTTTAATATATTTTTAATATATTAT 13 244 1 TTTATATTTT 0.931722 -30 ACAGTGTGATTATGATATTCCTTTTTTATTAGTT 14 88 0 TATATATCTT 0.782283 -90 AACTTTAAACTTTATTATTACATTCATTTTTAAT 14 126 1 TTTTTATCTT 0.908133 -52 CAATTAAATTTTTGATATGTTTTTGATTTGATGT 15 46 1 TTTATATTTT 0.931729 -100 *** **** * ** Masking position 6 Map Score: 20.422 Number of sites scoring better than the average of aligned sites = 657 Number in coding regions = 474 Number in noncoding regions = 183 Number of orfs with sites within 600 bp upstream = 176 Fraction of orfs with sites within 600 bp upstream = 0.0282686 Motif number 6 TAATAAAAAGAATTGCTATTTAAAAAAGGTA 5 39 0 AATTCTATTT 0.953669 -32 AAACTACAGAAAGTCCTATTTGAATTTTATG 6 39 0 AAGTCTATTT 0.978331 -262 AACTACAAAAAAGTTCTATTTGGAACTTTAA 6 145 1 AAGTCTATTT 0.978331 -156 ACCTCTGCGAAAGTCCTATTTAAATATCACA 6 241 1 AAGTCTATTT 0.978331 -60 TTGTATAATTAATTAATATTTGTAGAATATA 7 166 0 AATTATATTT 0.749508 -135 TATTACTACCAAATACTATTTCAGAAGCTAA 8 27 1 AAATCTATTT 0.711622 -45 **** ****** Masking position 7 Map Score: 4.57039 Number of sites scoring better than the average of aligned sites = 25 Number in coding regions = 13 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 7 CAATCAATCATCAAAGTTTAGGTATGTAATT 2 78 1 TCAAGTTTAG 0.686827 -223 TAATTATGTCTTATATTTTAATGTTAGGATG 3 86 1 TTAATTTTAA 0.787566 -46 ATAAATATAATTGGAGTTAAAAATAATTAAG 4 220 1 TTGAGTTAAA 0.415653 -81 GAAAGTATGTTTAAAGTTTCAAGATAAATTG 4 270 1 TTAAGTTTCA 0.775839 -31 TTGTGCAATGATAAATTTTAGTCTACGAACG 6 94 0 ATAATTTTAG 0.622039 -207 TAGAACTTTTTTGTAGTTTAAAACATTAGGT 6 132 0 TTGAGTTTAA 0.885784 -169 GTGAATGATATTAACGTTTAAATCCGGTTTT 7 230 1 TTACGTTTAA 0.776367 -71 AAGATAAAATATAAAATTTAGGTGTCAAAC 7 281 1 ATAAATTTAG 0.534255 -20 GTTTTTAGAAATACAGTTTAAT 12 2 0 ATAAGTTTAA 0.932116 -88 TAAGTATTCAATATAGTTTAGTACA 14 5 0 ATAAGTTTAG 0.892853 -173 TAATCCATATTTATAGTTTAAGTATTCAATA 14 23 0 TTAAGTTTAA 0.954443 -155 GAATGTAATAATAAAGTTTAAAGTTAGTGAC 14 120 0 ATAAGTTTAA 0.91997 -58 AAGACCTTAATTAAATTTTAAATATTAAACT 15 83 1 TTAATTTTAA 0.499241 -63 ATTATAACTATTCAAGTTTAATATTTAAAAT 15 97 0 TTCAGTTTAA 0.799973 -49 TAATTTATAGTTATAATTTAATAATTTAGAA 15 124 1 TTAAATTTAA 0.719788 -22 *** ******* Masking position 7 Map Score: 9.53419 Number of sites scoring better than the average of aligned sites = 251 Number in coding regions = 194 Number in noncoding regions = 57 Number of orfs with sites within 600 bp upstream = 66 Fraction of orfs with sites within 600 bp upstream = 0.0106007 Motif number 8 CAAAACAATCAATCATCAAAGTTTAGGTAT 2 73 1 AATCATCAAA 0.794923 -228 GGAAAATATAAAAACCCAATGGGTTTTTAA 2 117 0 AAAACCCAAT 0.712236 -184 TGCTACAATCAATCATCAAATAAACTTATT 2 153 0 AATCATCAAA 0.794923 -148 ATTTAAAGAAAATCCCCAATTTTTAAATTA 2 256 1 AATCCCCAAT 0.97577 -45 TTAAATCAATCCCCCAAAATTGTCCCA 3 115 0 AATCCCCCAA 0.90012 -17 TGTAACTCCCCAATTTATCTTGAA 4 287 0 ACTCCCCAAT 0.939231 -14 AATTAACATTAATAACCAAAGTTTTAGCTT 7 99 1 AATAACCAAA 0.861733 -202 GATGGACACCCCAAAAAGATAATTT 8 57 0 ACACCCCAAA 0.82005 -15 ATTATCACCAAAAGGTTAAAAA 11 22 0 TATCACCAAA 0.861933 -12 TTTATCACCAATAACACTCTTA 12 78 0 TATCACCAAT 0.840089 -12 TTATATCCGCAATACCCAATTAAATTTTTG 15 30 1 AATACCCAAT 0.908886 -116 ********** Masking position 9 Map Score: 6.38962 Number of sites scoring better than the average of aligned sites = 464 Number in coding regions = 375 Number in noncoding regions = 89 Number of orfs with sites within 600 bp upstream = 99 Fraction of orfs with sites within 600 bp upstream = 0.0159011 Motif number 9 AGCTACCAGCCCACAAAACAATCAATCATC 2 60 1 CCACAAAACA 0.795705 -241 TAAAAATTTAGTACAAAAAATAATTAAATA 3 21 0 GTACAAAAAA 0.940887 -111 TCACCTTTTACTATAAAAATCTTAAAAATT 3 43 0 CTATAAAAAT 0.643189 -89 ATTTAAATATGTACAAAAATTTAAAAAATA 4 153 1 GTACAAAAAT 0.90844 -148 ATTTATCATTGCACAAAAAAGTGACCTAAT 6 109 1 GCACAAAAAA 0.900132 -192 ATGTTTTAAACTACAAAAAAGTTCTATTTG 6 137 1 CTACAAAAAA 0.96282 -164 GGGCTATATTCTACAAATATTAATTAATTA 7 162 1 CTACAAATAT 0.743116 -139 AACATTACTACTGCAAAAAATAATAAAAAA 13 141 0 CTGCAAAAAA 0.873066 -133 ********** Masking position 5 Map Score: 0.966536 Number of sites scoring better than the average of aligned sites = 179 Number in coding regions = 134 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 10 ********** No masking Map Score: 6.91659e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: 6.91659e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 6.91659e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0