AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i199_trans1_mtub_reg_100.orf -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 rpsF 218 rpsF #2 ssb 103 ssb #3 rpsR 41 rpsR #4 rplI 32 rplI #5 Rv0057 28 hypothetical protein Rv0057 #6 secE 300 secE #7 nusG 31 nusG #8 rplK 51 rplK #9 rplA 66 rplA #10 rplJ 300 rplJ #11 rplL 36 rplL #12 rpoB 300 rpoB #13 rpoC 44 rpoC #14 rpsL 248 rpsL #15 fusA 80 fusA #16 tuf 230 tuf #17 rpsJ 300 rpsJ #18 rplB 92 rplB #19 rpsS 40 rpsS #20 rplN 300 rplN #21 rpsH 163 rpsH #22 rplF 23 rplF #23 secY 160 secY #24 Rv1284 206 hypothetical protein Rv1284 #25 cysD 93 cysD #26 modA 161 modA #27 rpmB2 112 rpmB2 #28 truA 67 truA #29 rplQ 31 rplQ #30 rpoA 151 rpoA #31 rpsM 215 rpsM #32 rpmJ 32 rpmJ #33 infA 253 infA Motif number 1 CGATAGGCCTCGCCGTTCGCGACACTGACATTG 1 19 1 CCGTCGCGAC 0.812352 -200 ACATTGCGCACACGACACGCCGCGGATCGTCGC 1 46 1 CGACCGCCGC 0.940058 -173 AAATGCCGACCAGGCACCACCGCACTCCAGGCT 1 88 0 CGCACACCGC 0.80416 -131 GGGCTCTCGTGTAGCCTGGGCGAGTTGCCGACG 1 131 1 GGCCGGGCGA 0.806523 -88 GGCGAGTTGCCGACGCAGGCGACCCTCCTGCCA 1 149 1 CCGCGGCGAC 0.960953 -70 TGCCACGGATCGACCGTGGCCGCACACGACCAC 1 177 1 CCCGGGCCGC 0.973747 -42 ACAGCCAGTGCCTGGCAGGCCGA 2 1 0 CGGCGGCCGA 0.991881 -103 GTGCGGTTACGTAGGCTCGGCGAAGAAGAACAC 2 43 1 GGGCCGGCGA 0.861579 -61 ACCAGCCGCCGAACCCAGGCGGACGCAGGAGGA 2 77 1 GCCCGGCGGA 0.935209 -27 GGCGAGCTGAGGCCACAACAGTTTGC 5 4 1 GCTGGGCCAC 0.710981 -25 ATCACCGAACGGAGGGCGCGCGTGTCATG 6 7 1 GCGGGGGCGC 0.907188 -294 CCCCGGCGTAGTGGGTTGGCCAGGGCCTGGTCT 6 44 1 GGGTGGCCAG 0.582187 -257 GCAGGTTCAAGTCCTGTCGCCCCTGCTGAAGGC 6 146 1 GCTGCGCCCC 0.734713 -155 GTGGACACTGGAAGGTGCCCCACCAGAGCGGAA 6 241 1 GGGTCCCCAC 0.700109 -60 CCTTCGTTTACTAGCTACCCCGCGAGCCGTTCC 6 270 0 CGCTCCCCGC 0.901159 -31 CCCAGCAGGGCAGGCCACACAGGCTGAA 8 6 1 CGGCGGCCAC 0.965585 -46 GGCCCTACCCGTGGGAGGGCCAGCTTCGGCCC 9 10 1 CGGGGGGCCA 0.742343 -57 GTCGTGGTTACTCAGCGGGCCGAAGCTGGCCCT 9 26 0 CAGCGGCCGA 0.784314 -41 GAGTGTGAATCCCGCGACGCCGCACCGG 10 6 0 CGCGCGCCGC 0.551736 -295 AAAACGGCGACACGTATCGCCGAGTGTGAATCC 10 27 0 CGTACGCCGA 0.653015 -274 CGTTTTGGCTGACCGGACCGGGCCAGGCTATTG 10 54 1 GCGGCCGGGC 0.497291 -247 CACCGAAGACCGTCGGTCACCGAGCAATCGGTT 10 99 1 CCGGCACCGA 0.873228 -202 CGTCCTCCTGCGTGGGTCGCCGGGATGCTCCCG 10 139 0 CGGGCGCCGG 0.960954 -162 AGGCAGCACCGCCGGCGCGCGCCGGCCTAGTTC 10 172 1 GGGCCGCGCC 0.519115 -129 CACCCGGGAACGACGAACGCCCCGACGCAGGAA 10 219 0 CCGACGCCCC 0.949487 -82 GTTCCCGGGTGGTCGCAGACGGCACGTCGTACC 10 241 1 GCGCGACGGC 0.903605 -60 GCAGACGGCACGTCGTACCCCGACTGCCACCAG 10 255 1 CCGTCCCCGA 0.827303 -46 CCCACACCAGGAAGGACCGCCCATC 11 22 1 GGGACGCCCA 0.823972 -15 TCGAGATCGCCAGCTAGCGCCGATATCCGGGGA 12 12 1 CCTACGCCGA 0.616653 -289 CAACAATAGCGCAGGACGGCGCATTCCTCAAAT 12 60 0 GGGAGGCGCA 0.681689 -241 TTCCTGCCCACCTCACCCGCCACTTGACACCGT 12 110 1 CCACCGCCAC 0.768925 -191 CGGACAGATCGTTCGCCGGCCGAAACCGACAAA 12 198 1 GCGCGGCCGA 0.984421 -103 GTGCCCACGGGCCCGTTCGCCGCGATAATTTTG 12 227 0 GCGTCGCCGC 0.960873 -74 GCCCTTAGAGGAGCGGTGCCCACGGGCCCGTTC 12 242 0 GCGGGCCCAC 0.864808 -59 CGCCCTGCTTCGGCCGCAACGCCCGCT 14 5 1 CCTTGGCCGC 0.840255 -244 CTTTGACCTGCCAGACTGGCGGCGGGTATTGTG 14 36 1 CGACGGCGGC 0.876487 -213 TGTGGTTGCTCGTGCCTGGCGGCTTACGCTTGA 14 65 1 CGCCGGCGGC 0.962618 -184 TAGGGGCGTGGATGCCGGGCCAATTCGCATGTC 14 100 1 GGCCGGCCAA 0.914331 -149 CGTCTCATCCGAGGCATCGCGGACATGCGAATT 14 121 0 GGCACGCGGA 0.716744 -128 AGCTATGCGACACACCCGGCCGCGGGTAACCGT 14 170 1 CACCGGCCGC 0.855881 -79 GTTTGTCGGCCATGCCCCGCCACGGTTACCCGC 14 191 0 CGCCCGCCAC 0.977153 -58 CGCCGGTTAGCCAGCCAGGGCGCAAACCGACAG 15 15 1 CGCCGGGCGC 0.742525 -66 GCAATGGGTACAGCGAAGGCGACGGGCGACTAG 16 37 1 CCGAGGCGAC 0.834799 -194 GCAATGAGCAGCGCGAAGGCGACTGGCGAGTAG 16 108 1 GCGAGGCGAC 0.741204 -123 AACCATACGAGTAGGCTGGCCCGGTTACGACCG 16 145 1 GGGCGGCCCG 0.75345 -86 CAGACGCAAACCTGGCGCAGGGCAACCTGAACA 17 20 0 CGGCCAGGGC 0.608669 -281 GGTCGTATGCCCGGCCAGACGCAAACCTGGCGC 17 35 0 CGCCGACGCA 0.60571 -266 GCCGGGCATACGACCAGCGCCCACACGGGCGCG 17 53 1 CCCACGCCCA 0.795596 -248 TCAAGGGTGGGACCGGACGCGCCCGTGTGGGCG 17 70 0 GCGGCGCGCC 0.931575 -231 AGGCTGTGTGCGGGCGACACGCCCGAGCGCGGG 17 139 1 CGCGCACGCC 0.504563 -162 TGTCGTAGGTCCACCGGCCCCGCGCTCGGGCGT 17 157 0 CCCGCCCCGC 0.927611 -144 TCCGGTGCTCCCCGGCGCGCCGATCGACCCGGT 17 239 0 CGGCCGCCGA 0.983004 -62 CGCCGGGGAGCACCGGACCCGGATACGGGCTCG 17 255 1 CCGGCCCGGA 0.857695 -46 CTTCGCTCTGCATCGTCGCCGGG 18 1 0 CCGTGCCGGG 0.520221 -92 CTCTCGTCGCCGGGCTAGGCCGCATTGCCCTGC 18 46 0 CGCTGGCCGC 0.940932 -47 TTGATCTGCCCTGGTGGGGCGGACTCACATTAG 20 92 1 CGTGGGCGGA 0.731612 -209 CAAAGCTTATGCGCGCCGGCCGAGGTCTGCTCA 20 173 0 GCGCGGCCGA 0.965519 -128 CGCCGACGGGCACGCGGGGCCGACCAAGCAAAG 20 201 0 CGCGGGCCGA 0.975651 -100 CAGGGATGGTCCTGGCTGGCTCCTCCTACCGTG 20 251 1 CGGCGGCTCC 0.75011 -50 GAACATATGACCGCGCTGACGACGATGCAGTGG 21 27 1 CCGCGACGAC 0.726287 -137 CTGCGCGTCTGGGGGTACCCCCACTGCATCGTC 21 47 0 GGGTCCCCCA 0.585669 -117 ATCGCTTGCGGCCCCCTCGCCGCTGCGCGTCTG 21 69 0 GCCCCGCCGC 0.57571 -95 CGCTCGATGACCGCGCTGACGACGATGCAGAGC 21 114 1 CCGCGACGAC 0.726287 -50 TCGATAGCTCGCACCGTGGCGGCCCGGAACGGG 23 22 1 GCCGGGCGGC 0.81013 -139 GGACGTACGGCGTCGCGCGCCAAATCGTGTAAG 23 79 0 CCGCCGCCAA 0.957455 -82 GGTCATCTTGCATCACGCGCCCAACACCCGCAG 23 116 0 CCACCGCCCA 0.668476 -45 TCTATCCTCCTGCGCAGCCCGGGGTCATCTTG 23 139 0 CCGCGCCCGG 0.7206 -22 TTGGGACAGGGTAGCGAGCCCGGCGATGGCGTG 24 30 1 GGCGGCCCGG 0.511959 -177 CCATCAACCGGCGCGCTGGCGGCACGCCATCGC 24 52 0 GCGCGGCGGC 0.555793 -155 CCATCCGGATCACGGGTGACCCCATCAACCGGC 24 73 0 CGGGGACCCC 0.916349 -134 CCGGATGGTTCCGCTCGGGCCGATTCTGATGCG 24 98 1 CCTCGGCCGA 0.913354 -109 CCGCGATACCCGAGGAGGCCCGC 24 194 1 CGGAGCCCGC 0.947964 -13 CCAGTGCGCCCTAGGCTGACGGCTCGGGCTG 25 9 0 CGGCGACGGC 0.942951 -85 GCAGCCCCATCTCGGCGGGCTGCCGGTGCGCCA 25 39 0 CGGCGGCTGC 0.64731 -55 CTATCGCTGTCAACGCAGCCCCATCTCGGCGGG 25 53 0 CCGCGCCCCA 0.931028 -41 TTCGGGGAAACTCCGCACCGCCACGACGCGCAG 26 110 1 CCGCCCGCCA 0.532523 -52 TTGTGCAGCCCAGCCCGCGAAATCGGTT 28 50 0 CCCCGCCCGC 0.96819 -18 CAACCCTCGGGGGGCGCCGCCCCCCGAGTACCC 30 14 1 GGCGCGCCCC 0.499232 -138 CAACCCTCGGGGGGCGCCGCCCCCCGAGTACCC 30 54 1 GGCGCGCCCC 0.499232 -98 CCCACCCTCGGGGGCGCCGCCCCCGAGTGCCCC 30 86 1 GGCGCGCCCC 0.499232 -66 GCGCCGCCCCCGAGTGCCCCCACAGACGTCATA 30 99 1 CGTGCCCCAC 0.547888 -53 CCTCGGACCACTACGCGGCCCGCATCGTCGCCG 31 13 0 CCGCGCCCGC 0.983167 -203 GGTCCGAGGAGGAGCCGGACGGCCCGACAACTA 31 37 1 GGCCGACGGC 0.745984 -179 CGCCCGGACGGAGGCCGGGCCCCACACCCAAAG 31 130 1 GGCCGGCCCC 0.747512 -86 GTCCCAGTCCGTTCCCTGCCCAAAAAAGATCTT 31 160 0 GCCCGCCCAA 0.73378 -56 GCTCTAACCGCTCGGCTCACCGGTGCTATTCCG 33 15 1 CGGCCACCGG 0.803192 -239 CTGCGCAAAACGCCGTAGGCCACGCGCTCACCG 33 46 0 CCGTGGCCAC 0.927565 -208 GCCAAACCGGCACGGGACACCGCACCGCCAACC 33 102 0 CGGGCACCGC 0.956933 -152 ATTTTCAAAACTGGGCACGCCAAACCGGCACGG 33 120 0 CGGCCGCCAA 0.958673 -134 AGTCCGAGCACGTGCTGCGCCGGAATCGGGTGC 33 198 1 CGCTCGCCGG 0.842083 -56 ACAAGGAAGAGAAGGATCGCCAGAAAGTA 33 235 1 GGGACGCCAG 0.576321 -19 * *** ****** Masking position 10 Map Score: 134.95 Number of sites scoring better than the average of aligned sites = 109134 Number in coding regions = 102351 Number in noncoding regions = 6783 Number of orfs with sites within 600 bp upstream = 1636 Fraction of orfs with sites within 600 bp upstream = 0.262769 Motif number 2 GTGTCGCGAACGGCGAGGCCTATCGCGAAC 1 14 0 CGGCGAGGCC 0.986327 -205 ATTGCGCACACGACACGCCGCGGATCGTCG 1 48 1 CGACACGCCG 0.776983 -171 GCCTACGTAACCGCACCGACAGCGAACAGC 2 29 0 CCGCACCGAC 0.91726 -75 CCTGGCCAACCCACTACGCCGGGGCTCACA 6 38 0 CCACTACGCC 0.798722 -263 GCCAGTTGAGCTACGCCCCTTCGCGGTTGG 6 88 0 CTACGCCCCT 0.674727 -213 GGCGAACGTTCGACGACGATGCAGGCACGG 6 176 1 CGACGACGAT 0.740273 -125 ACTAGCTACCCCGCGAGCCGTTCCGCTCTG 6 264 0 CCGCGAGCCG 0.933669 -37 CGCTGAGTAACCACGACCCATAGATTGGAT 9 42 1 CCACGACCCA 0.832089 -25 AGTGTGAATCCCGCGACGCCGCACCGG 10 8 0 CCGCGACGCC 0.993214 -293 TCAGCCAAAACGGCGACACGTATCGCCGAG 10 36 0 CGGCGACACG 0.839323 -265 TTCGGTGGATCGGCAACCACAATAGCCTGG 10 76 0 CGGCAACCAC 0.877613 -225 GGGAGCATCCCGGCGACCCACGCAGGAGGA 10 140 1 CGGCGACCCA 0.956977 -161 GAGGACGAGGCAGCACCGCCGGCGCGCGCC 10 165 1 CAGCACCGCC 0.858784 -136 CGGCCTAGTTCCACGCCCCGACCGCTTCCT 10 194 1 CCACGCCCCG 0.985699 -107 GACGTGCCGTCTGCGACCACCCGGGAACGA 10 239 0 CTGCGACCAC 0.713925 -62 AGTCGGGGTACGACGTGCCGTCTGCGACCA 10 250 0 CGACGTGCCG 0.744077 -51 CTTAGAGGAGCGGTGCCCACGGGCCCGTTC 12 242 0 CGGTGCCCAC 0.816475 -59 CCTGCTTCGGCCGCAACGCCCGCTTTGACC 14 14 1 CCGCAACGCC 0.969117 -235 GGCCCGGCATCCACGCCCCTACATCAAGCG 14 91 0 CCACGCCCCT 0.9538 -158 ATTCGCATGTCCGCGATGCCTCGGATGAGA 14 122 1 CCGCGATGCC 0.75473 -127 TGCCCCGCCACGGTTACCCGCGGCCGGGTG 14 182 0 CGGTTACCCG 0.512356 -67 TGTTTGTCGGCCATGCCCCGCCACGGTTAC 14 195 0 CCATGCCCCG 0.827238 -54 AGGCGACGGGCGACTAGGCGATGCGAAGAC 16 53 1 CGACTAGGCG 0.642489 -178 GGCATACGACCAGCGCCCACACGGGCGCGT 17 57 1 CAGCGCCCAC 0.827979 -244 AAATTGATCGCGACAAGGCTGTGTGCGGGC 17 124 1 CGACAAGGCT 0.553491 -177 TGTGTGCGGGCGACACGCCCGAGCGCGGGG 17 143 1 CGACACGCCC 0.891094 -158 GTAGGTCCACCGGCCCCGCGCTCGGGCGTG 17 156 0 CGGCCCCGCG 0.92079 -145 GCGCCGAATACTGCGCCGCTGTTTACCTGT 17 187 0 CTGCGCCGCT 0.884223 -114 CCGGGTCGATCGGCGCGCCGGGGAGCACCG 17 240 1 CGGCGCGCCG 0.499965 -61 CCCGGCGACGATGCAGAGCGAA 18 3 1 CGGCGACGAT 0.906737 -90 CGGCCTAGCCCGGCGACGAGAGCGTGAGAG 18 57 1 CGGCGACGAG 0.970219 -36 GGTCTGCTCACGGCAACCCCTGAAGTTTAG 20 153 0 CGGCAACCCC 0.974924 -148 AGACCTCGGCCGGCGCGCATAAGCTTTGCT 20 178 1 CGGCGCGCAT 0.840252 -123 TTGGTCGGCCCCGCGTGCCCGTCGGCGACA 20 207 1 CCGCGTGCCC 0.944909 -94 GTTCTAGTCCCCGTGTCCCG 21 1 0 CCGTGTCCCG 0.743897 -163 CTGGCCCGTTCCGGGCCGCCACGGTGCGAG 23 29 0 CCGGGCCGCC 0.876822 -132 CCAGGACGTACGGCGTCGCGCGCCAAATCG 23 85 0 CGGCGTCGCG 0.980644 -76 GCCCAACCACCGCGTCGCATTGGGACAGG 24 10 1 CCGCGTCGCA 0.86224 -197 GGCGCGCTGGCGGCACGCCATCGCCGGGCT 24 46 0 CGGCACGCCA 0.727708 -161 GGCGTGCCGCCAGCGCGCCGGTTGATGGGG 24 57 1 CAGCGCGCCG 0.670516 -150 CTACTCAGATCGACGCCGCGGTGAATTTTA 24 153 0 CGACGCCGCG 0.990072 -54 GTAGCAAAGTCCACACCGCGATACCCGAGG 24 179 1 CCACACCGCG 0.941411 -28 CGCGTCGTGGCGGTGCGGAGTTTCCCCGAA 26 110 0 CGGTGCGGAG 0.617347 -52 CTCCGCACCGCCACGACGCGCAGACGATCT 26 120 1 CCACGACGCG 0.974911 -42 TTCATTATTGCGACGTCGACGGTACAGTGC 27 34 1 CGACGTCGAC 0.784053 -79 ACTCGGGGGGCGGCGCCCCCCGAGGGTTGG 30 13 0 CGGCGCCCCC 0.986747 -139 ACTCGGGGGGCGGCGCCCCCCGAGGGTTGG 30 53 0 CGGCGCCCCC 0.986747 -99 CACTCGGGGGCGGCGCCCCCGAGGGTGGGG 30 85 0 CGGCGCCCCC 0.986747 -67 TTCGGCGACGATGCGGGCCGCG 31 3 1 CGGCGACGAT 0.906737 -213 CCTCCTCGGACCACTACGCGGCCCGCATCG 31 19 0 CCACTACGCG 0.782312 -197 GTTGCTCTAACCGCTCGGCTCACCGGTGCT 33 12 1 CCGCTCGGCT 0.723152 -242 CCCACATTACCCGCATCGCCGTGCTCTGCG 33 74 0 CCGCATCGCC 0.914999 -180 GCACGGGACACCGCACCGCCAACCCACATT 33 96 0 CCGCACCGCC 0.983746 -158 ********** Masking position 1 Map Score: 84.1786 Number of sites scoring better than the average of aligned sites = 48312 Number in coding regions = 45354 Number in noncoding regions = 2958 Number of orfs with sites within 600 bp upstream = 1201 Fraction of orfs with sites within 600 bp upstream = 0.192901 Motif number 3 CACCTCCTGTGGTCGTGTGCGGCCACGGTCGA 1 186 0 GGTGTGGCGG 0.480018 -33 AGGAACCTCATCACCTCCTGTGGTCGT 1 202 0 CCTATCCCTC 0.497252 -17 TTTCCTCCTGCGTCCGCCTGGGTTCGGCGGCT 2 80 0 CGTCGCTGGG 0.577485 -24 GACACGCGCGCCCTCCGTTCGGTGAT 6 5 0 CCCCCGTCGG 0.903314 -296 CAAGACCAGACCAGGCCCTGGCCAACCCACTA 6 52 0 CCAGCCTGGC 0.427134 -249 TCTGGTCTTGCCTGCCAACCGCGAAGGGGCGT 6 74 1 CCTCCACCGC 0.522784 -227 AGCTCAACTGGCAGAGCAGCGGTCTCCAAAAC 6 106 1 GCAAGCGCGG 0.599502 -195 CCCCGCGAGCCGTTCCGCTCTGGTGGGGCACC 6 254 0 CGTCCGTCTG 0.424579 -47 GCCTGTGTGGCCTGCCCTGCTGGG 8 3 0 CCTCCCGCTG 0.830043 -49 GGCCCTACCCGTGGGAGGGCCAGCT 9 4 1 CCTCCCTGGG 0.844663 -63 GGGAGGGCCAGCTTCGGCCCGCTGAGTAACCA 9 23 1 GCTCGGCCGC 0.723159 -44 ACAATAGCCTGGCCCGGTCCGGTCAGCCAAAA 10 56 0 GGCCGGCCGG 0.639042 -245 CAGCACCGCCGGCGCGCGCCGGCCTAGTTCCA 10 175 1 GGCCGCCCGG 0.85387 -126 CCTAGTTCCACGCCCCGACCGCTTCCTGCGTC 10 197 1 CGCCCGCCGC 0.940791 -104 GGGCGTTCGTCGTTCCCGGGTGGTCGCAGACG 10 230 1 CGTCCCGGTG 0.410235 -71 GCATACCTCCTGACGGTGCAAG 10 289 0 GCAACCCCTG 0.290928 -12 AACCATCCCCGGATATCGGCGCTAGCTGGCGA 12 18 0 GGAATCGCGC 0.699437 -283 CTGGCTACTTCCTGCCCACCTCACCCGCCACT 12 102 1 CCTCCCCCTC 0.840576 -199 GGCCGGCGAACGATCTGTCCGGATCTCACGCA 12 187 0 CGACTGCCGG 0.739419 -114 TTAGAGGAGCGGTGCCCACGGGCCCGTTCGCC 12 239 0 GGTCCCCGGG 0.802118 -62 CTGCTTCGGCCGCAACGCCCGCTTTGACCTGC 14 15 1 CGCACGCCGC 0.877011 -234 GCCCCGCCACGGTTACCCGCGGCCGGGTGTGT 14 179 0 GGTACCGCGG 0.922086 -70 GCCCTGGCTGGCTAACCGGCGCTTC 15 4 0 GCTACCGCGC 0.937709 -77 CCTAGTCGCCCGTCGCCTTCGCTGTACCCATT 16 39 0 CGTGCCTCGC 0.908189 -192 GCTCACTAGCGGTCGTCTTCGCATCGCCTAGT 16 65 0 GGTGTCTCGC 0.65966 -166 GCTCATTGCTCGTGAGCTTCGCTCACTAGCGG 16 85 0 CGTAGCTCGC 0.811704 -146 AGGCTGGCCCGGTTACGACCGCGGCATAACTG 16 157 1 GGTACGCCGC 0.794528 -74 CGACCAGCGCCCACACGGGCGCGTCCGGTCCC 17 63 1 CCAACGGCGC 0.801975 -238 ATTTCAAGGCCGAAATCGTCGCGCTTCAAGGG 17 96 0 CGAATCTCGC 0.736503 -205 GGTCCACCGGCCCCGCGCTCGGGCGTGTCGCC 17 151 0 CCCGCGTCGG 0.715956 -150 CGGGTCCGGTGCTCCCCGGCGCGCCGATCGAC 17 244 0 GCTCCCGCGC 0.970983 -57 TTGCCCTGCTCCTCCTCATCGCTTCGCTCTGC 18 23 0 CCTCTCTCGC 0.943955 -70 CTTTCTCTCACGCTCTCGTCGCCGGGCTAGGC 18 59 0 CGCCTCTCGC 0.928125 -34 CCACGATCGTCGAGATCTCCGCCTGAATCATC 20 14 0 CGAATCCCGC 0.82605 -287 TGTGAGTCCGCCCCACCAGGGCAGATCAACCC 20 89 0 CCCACCGGGC 0.815474 -212 TAGGGGACGACCTACTCAGCGCAAAATTTCGC 20 124 0 CCTCTCGCGC 0.967642 -177 GTTGCCGTGAGCAGACCTCGGCCGGCGCGCAT 20 166 1 GCAACCCGGC 0.489746 -135 ACCAAGCAAAGCTTATGCGCGCCGGCCGAGGT 20 180 0 GCTATGGCGC 0.655788 -121 GTCGGCCCCGCGTGCCCGTCGGCGACAAAGAC 20 210 1 CGTCCCTCGG 0.969383 -91 CAGGACCATCCCTGACGTGCGCGGTCTTTGTC 20 233 0 CCTACGGCGC 0.90664 -68 CCCACTGCATCGTCGTCAGCGCGGTCATATGT 21 29 0 CGTGTCGCGC 0.880083 -135 TCGCTTGCGGCCCCCTCGCCGCTGCGCGTCTG 21 69 0 CCCCTCCCGC 0.96099 -95 GAGCGCTACTCCTCCTCATCGCTTGCGGCCCC 21 87 0 CCTCTCTCGC 0.943955 -77 CGCTCTGCATCGTCGTCAGCGCGGTCATCGAG 21 116 0 CGTGTCGCGC 0.880083 -48 GAGCGCTACTCCTCCTCATCGCTTGCGCTCTG 21 141 0 CCTCTCTCGC 0.943955 -23 ACGGGCCAGTCCATACCAGCTGTTAGTCTCTT 23 50 1 CCAACCGCTG 0.477651 -111 CGCCGTACGTCCTGGCCTGCGGGTGTTGGGCG 23 100 1 CCTGCCGCGG 0.946068 -61 GCAAGATGACCCCGGGCTGCGCAGGAGGATAG 23 138 1 CCCGGCGCGC 0.81761 -23 GCCCAACCACCGCGTCGCATTGG 24 2 1 CCCACCCCGC 0.963747 -205 GCTGGCGGCACGCCATCGCCGGGCTCGCTACC 24 39 0 CGCATCCCGG 0.89721 -168 TGGCGTGCCGCCAGCGCGCCGGTTGATGGGGT 24 56 1 CCACGCCCGG 0.871441 -151 TGATCCGGATGGTTCCGCTCGGGCCGATTCTG 24 94 1 GGTCCGTCGG 0.817972 -113 CAACGCAGCCCCATCTCGGCGGGCTGCCGGTG 25 44 0 CCACTCGCGG 0.917046 -50 ATCGTGATGGCGTAAGCTCCGGTAGATGTTAC 26 65 1 CGTAGCCCGG 0.866512 -97 ACCCAACCCTCGGGGGGCGCCGC 30 2 1 CCCACCTCGG 0.931676 -150 TGGGTTGGGGGGTACTCGGGGGGCGGCGCCCC 30 24 0 GGTCTCGGGG 0.639005 -128 TACCCCCCAACCCAACCCTCGGGGGGCGCCGC 30 42 1 CCCACCTCGG 0.931676 -110 CCCCGAGTACCCCCACCCTCGGGGGCGCCGCC 30 75 1 CCCACCTCGG 0.930837 -77 CGTCTGTGGGGGCACTCGGGGGCGGCGCCCCC 30 95 0 GGCCTCGGGG 0.604635 -57 GGGCCGTCCGGCTCCTCCTCGGACCACTACGC 31 30 0 GCTCTCTCGG 0.874998 -186 GTGGGGCCCGGCCTCCGTCCGGGCGTGAATGA 31 123 0 GCCCCGCCGG 0.881567 -93 GGTCCCAGTCCGTTCCCTGCCCAAAAAAGATC 31 162 0 CGTCCCGCCC 0.564683 -54 CGGACTGGGACCATACCTCCGCAGAGGAAGAG 31 182 1 CCAACCCCGC 0.92765 -34 CCGTAGGCCACGCGCTCACCGGAATAGCACCG 33 35 0 CGCCTCCCGG 0.951088 -219 CCCGCATCGCCGTGCTCTGCGCAAAACGCCGT 33 63 0 CGTCTCGCGC 0.963644 -191 AAAATTTCTCGGAGCCCTTCGCGGAATTTCCA 33 148 1 GGACCCTCGC 0.874794 -106 *** *** **** Masking position 10 Map Score: 94.5926 Number of sites scoring better than the average of aligned sites = 65537 Number in coding regions = 61415 Number in noncoding regions = 4122 Number of orfs with sites within 600 bp upstream = 1453 Fraction of orfs with sites within 600 bp upstream = 0.233376 Motif number 4 TAACCCGGTGCGACGATCCGCGGCGTGTCG 1 58 0 CGACGATCCG 0.872149 -161 CTGGGCGAGTTGCCGACGCAGGCGACCCTC 1 146 1 TGCCGACGCA 0.883205 -73 GGCTGTTCGCTGTCGGTGCGGTTACGTAGG 2 28 1 TGTCGGTGCG 0.905916 -76 GAACGTTCGACGACGATGCAGGCACGGCCT 6 179 1 CGACGATGCA 0.948046 -122 CGCTGAGTAACCACGACCCATAGATTGGAT 9 42 1 CCACGACCCA 0.321828 -25 CCGGTGCGGCGTCGCGGGATTCACAC 10 7 1 CGGCGTCGCG 0.937075 -294 GATTCACACTCGGCGATACGTGTCGCCGTT 10 28 1 CGGCGATACG 0.842366 -273 CTATTGTGGTTGCCGATCCACCGAAGACCG 10 81 1 TGCCGATCCA 0.427903 -220 GGGAGCATCCCGGCGACCCACGCAGGAGGA 10 140 1 CGGCGACCCA 0.834915 -161 GAGGCAGCACCGCCGGCGCGCGCCGGCCTA 10 171 1 CGCCGGCGCG 0.991451 -130 CCGCTTCCTGCGTCGGGGCGTTCGTCGTTC 10 215 1 CGTCGGGGCG 0.826787 -86 GCATACCTCCTGACGGTGCAAGTCTGGTGG 10 281 0 TGACGGTGCA 0.917568 -20 CAATAGCGCAGGACGGCGCATTCCTCAAAT 12 60 0 GGACGGCGCA 0.797281 -241 CCTGCCAGACTGGCGGCGGGTATTGTGGTT 14 42 1 TGGCGGCGGG 0.800349 -207 ATTCGCATGTCCGCGATGCCTCGGATGAGA 14 122 1 CCGCGATGCC 0.378138 -127 CGGGTAACCGTGGCGGGGCATGGCCGACAA 14 192 1 TGGCGGGGCA 0.75113 -57 ACGGGCGACTAGGCGATGCGAAGACGACCG 16 58 1 AGGCGATGCG 0.73784 -173 GACAGGTAAACAGCGGCGCAGTATTCGGCG 17 186 1 CAGCGGCGCA 0.622717 -115 GTCCGGTGCTCCCCGGCGCGCCGATCGACC 17 243 0 CCCCGGCGCG 0.946481 -58 CCCGGCGACGATGCAGAGCGAAGCG 18 6 1 CGACGATGCA 0.948046 -87 CGGCCTAGCCCGGCGACGAGAGCGTGAGAG 18 57 1 CGGCGACGAG 0.706692 -36 AGCAGACCTCGGCCGGCGCGCATAAGCTTT 20 175 1 GGCCGGCGCG 0.913402 -126 CGGTCTTTGTCGCCGACGGGCACGCGGGGC 20 214 0 CGCCGACGGG 0.791345 -87 ACCGCGCTGACGACGATGCAGTGGGGGTAC 21 36 1 CGACGATGCA 0.948046 -128 GCGGCCCCCTCGCCGCTGCGCGTCTGGGGG 21 65 0 CGCCGCTGCG 0.902763 -99 ACCGCGCTGACGACGATGCAGAGCGCAAGC 21 123 1 CGACGATGCA 0.948046 -41 TTCCGGGCCGCCACGGTGCGAGCTATCGAA 23 21 0 CCACGGTGCG 0.935024 -140 CCAGGACGTACGGCGTCGCGCGCCAAATCG 23 85 0 CGGCGTCGCG 0.937075 -76 ACCGGCGCGCTGGCGGCACGCCATCGCCGG 24 49 0 TGGCGGCACG 0.810975 -158 CTACTCAGATCGACGCCGCGGTGAATTTTA 24 153 0 CGACGCCGCG 0.934192 -54 CGCCCTAGGCTGACGGCTCGGGCTG 25 6 0 TGACGGCTCG 0.512075 -88 CTCGGCGGGCTGCCGGTGCGCCAGTGCGCC 25 32 0 TGCCGGTGCG 0.967575 -62 GCTTACGCCATCACGATGCGATTCCAGGCA 26 52 0 TCACGATGCG 0.728482 -110 CTGCGCGTCGTGGCGGTGCGGAGTTTCCCC 26 113 0 TGGCGGTGCG 0.981031 -49 TTACCAAGATCGTCTGCGCGTCGTGGCGGT 26 126 0 CGTCTGCGCG 0.434989 -36 ATTGCGACGTCGACGGTACAGTGCCACCTA 27 40 1 CGACGGTACA 0.675347 -73 TTCGGCGACGATGCGGGCCGCGTAG 31 6 1 CGACGATGCG 0.981273 -210 GCGCAGAGCACGGCGATGCGGGTAATGTGG 33 73 1 CGGCGATGCG 0.988323 -181 TAATGTGGGTTGGCGGTGCGGTGTCCCGTG 33 95 1 TGGCGGTGCG 0.981031 -159 TTCTCTTCCTTGTCGGTGCACCCGATTCCG 33 218 0 TGTCGGTGCA 0.770251 -36 ********** Masking position 4 Map Score: 68.4294 Number of sites scoring better than the average of aligned sites = 22237 Number in coding regions = 20747 Number in noncoding regions = 1490 Number of orfs with sites within 600 bp upstream = 859 Fraction of orfs with sites within 600 bp upstream = 0.13797 Motif number 5 TGAAGGTCCGGGAGCATCCCGGCGACCCAC 10 131 1 GGAGCATCCC 0.665173 -170 CGTTGCGGCCGAAGCAGGGCG 14 2 0 GAAGCAGGGC 0.932178 -247 TAGGGGCGTGGATGCCGGGCCAATTCGCAT 14 100 1 GATGCCGGGC 0.87782 -149 TCACGAGTGAGGAGCCGAGCAATGGGTACA 16 19 1 GGAGCCGAGC 0.98648 -212 TCACGAGCAATGAGCAGCGCGAAGGCGACT 16 102 1 TGAGCAGCGC 0.965202 -129 ACGCAAACCTGGCGCAGGGCAACCTGAACA 17 20 0 GGCGCAGGGC 0.985305 -281 CCCGGCGACGATGCAGAGCGAAGCGATGA 18 10 1 GATGCAGAGC 0.811665 -83 GCGATGAGGAGGAGCAGGGCAATGCGGCCT 18 33 1 GGAGCAGGGC 0.984767 -60 GGGGTTGCCGTGAGCAGACCTCGGCCGGCG 20 163 1 TGAGCAGACC 0.882004 -138 ACGGGCACGCGGGGCCGACCAAGCAAAGCT 20 199 0 GGGGCCGACC 0.925531 -102 GCGATGAGGAGGAGTAGCGCTCGATGACCG 21 97 1 GGAGTAGCGC 0.910623 -67 CGCTGACGACGATGCAGAGCGCAAGCGATG 21 127 1 GATGCAGAGC 0.811665 -37 GCGATGAGGAGGAGTAGCGCTCG 21 151 1 GGAGTAGCGC 0.910623 -13 CAGGACGTACGGCGTCGCGCGCCAAATCGT 23 84 0 GGCGTCGCGC 0.935467 -77 TCTATCCTCCTGCGCAGCCCGGGGTCATCT 23 141 0 TGCGCAGCCC 0.939437 -20 TGATTTTCAATAAGCCGAGCTTCGAAGGAA 27 84 1 TAAGCCGAGC 0.801713 -29 TTGTGCAGCCCAGCCCGCGAA 28 57 0 TGTGCAGCCC 0.850724 -11 ACCCTCGGGGGGCGCCGCCCCCCGAGTACC 30 16 1 GGCGCCGCCC 0.987899 -136 ACCCTCGGGGGGCGCCGCCCCCCGAGTACC 30 56 1 GGCGCCGCCC 0.987899 -96 CACCCTCGGGGGCGCCGCCCCCGAGTGCCC 30 88 1 GGCGCCGCCC 0.987899 -64 GGTCCGAGGAGGAGCCGGACGGCCCGACAA 31 37 1 GGAGCCGGAC 0.824164 -179 CGCCCGGACGGAGGCCGGGCCCCACACCCA 31 130 1 GAGGCCGGGC 0.856246 -86 ATAGCACCGGTGAGCCGAGCGGTTAGAGCA 33 14 0 TGAGCCGAGC 0.950042 -240 TACGGCGTTTTGCGCAGAGCACGGCGATGC 33 62 1 TGCGCAGAGC 0.934979 -192 ********** Masking position 4 Map Score: 48.1646 Number of sites scoring better than the average of aligned sites = 6720 Number in coding regions = 6146 Number in noncoding regions = 574 Number of orfs with sites within 600 bp upstream = 385 Fraction of orfs with sites within 600 bp upstream = 0.0618375 Motif number 6 GGCCACGGTCGATCCGTGGCAGGAGGGTCGCC 1 166 0 GTCCGTGGCG 0.793068 -53 GCCACGGATCGACCGTGGCCGCACACGACCAC 1 178 1 GCCGTGGCCC 0.917438 -41 AATTTCCTCCTGCGTCCGCCTGGGTTC 2 87 0 CTCCTGCGTC 0.724603 -17 TGTCATGTGAGCCCCGGCGTAGTGGGTTGGCC 6 33 1 GCCCGGCGTG 0.932169 -268 GGCAAGACCAGACCAGGCCCTGGCCAACCCAC 6 54 0 GCCAGGCCCG 0.793424 -247 GTTGAGCTACGCCCCTTCGCGGTTGGCAGGCA 6 82 0 GCCCTTCGCG 0.940035 -219 CTCCTCTTCAGGCCGTGCCTGCATCGTCGTCG 6 186 0 GCCGTGCCTC 0.912244 -115 GACGTGTCGATGTCCTTCCTTGTTTCAGCCTG 8 30 0 TTCCTTCCTG 0.238349 -22 ACAATAGCCTGGCCCGGTCCGGTCAGCCAAAA 10 56 0 GCCCGGTCCG 0.877544 -245 GCTGCCTCGTCCTCCTGCGTGGGTCGCCGGGA 10 147 0 CTCCTGCGTG 0.84465 -154 CCGCCGGCGCGCGCCGGCCTAGTTCCACGCCC 10 180 1 GGCCGGCCTG 0.650085 -121 GCCCCGACCGCTTCCTGCGTCGGGGCGTTCGT 10 208 1 CTCCTGCGTG 0.84465 -93 TCGGGGCGTTCGTCGTTCCCGGGTGGTCGCAG 10 227 1 CTCGTTCCCG 0.856866 -74 GATGGGCGGTCCTTCCTGGTGTGGGGTAC 11 18 0 GTCCTTCCTG 0.904107 -19 GCGCTGGCTACTTCCTGCCCACCTCACCCGCC 12 99 1 CTCCTGCCCC 0.920161 -202 GATCCGGACAGATCGTTCGCCGGCCGAAACCG 12 194 1 GTCGTTCGCG 0.851826 -107 GTGCCCACGGGCCCGTTCGCCGCGATAATTTT 12 228 0 GCCGTTCGCG 0.903083 -73 GTAACTCCCTTTCCCCTAACGGGTTT 13 29 0 CCCCTTTCCC 0.484649 -16 TATTGTGGTTGCTCGTGCCTGGCGGCTTACGC 14 62 1 GTCGTGCCTG 0.929839 -187 TCTGTTTGTCGGCCATGCCCCGCCACGGTTAC 14 195 0 GCCATGCCCG 0.830155 -54 TGTCGGTTTGCGCCCTGGCTGGCTAACCGGCG 15 15 0 CCCCTGGCTG 0.901803 -66 ACACGGGCGCGTCCGGTCCCACCCTTGAAGCG 17 75 1 GCCGGTCCCC 0.879842 -226 CCGTATCCGGGTCCGGTGCTCCCCGGCGCGCC 17 251 0 GCCGGTGCTC 0.635298 -50 AGATCTCGACGATCGTGGGCGCTACCGCCAAT 20 28 1 GTCGTGGGCC 0.768386 -273 CGTCAGGGATGGTCCTGGCTGGCTCCTCCTAC 20 248 1 GTCCTGGCTG 0.918323 -53 ATGTTCTAGTCCCCGTGTCCCG 21 1 0 CCCGTGTCCG 0.732022 -163 GGACTGGCCCGTTCCGGGCCGCCACGGTGCGA 23 30 0 GTCCGGGCCC 0.900627 -131 CGACGCCGTACGTCCTGGCCTGCGGGTGTTGG 23 97 1 CTCCTGGCCG 0.923137 -64 TCTATCCTCCTGCGCAGCCCGGGGTCA 23 144 0 CTCCTGCGCG 0.920161 -17 CCAGACCCTGGACCGTTGCCTGGAATCGCATC 26 36 1 GCCGTTGCCG 0.906631 -126 GGGGCACCCTTCCTTCGAAGCTCGGC 27 97 0 CCCCTTCCTC 0.788437 -16 CGCGAAATCGGTTCCGTCGTAGGCGATATCGA 28 31 0 GTCCGTCGTG 0.781912 -37 AGCTGACGCTCCTGTCTGGATTAGAGGCA 29 13 0 GTCCTGTCTG 0.726342 -19 GTACCCCCACCCTCGGGGGCGCCGCCCCCGAG 30 81 1 CTCGGGGGCC 0.567796 -71 TTGGGTGTGGGGCCCGGCCTCCGTCCGGGCGT 31 129 0 GCCCGGCCTC 0.932169 -87 TATGGTCCCAGTCCGTTCCCTGCCCAAAAAAG 31 165 0 GCCGTTCCCG 0.950631 -51 GCGGTGCGGTGTCCCGTGCCGGTTTGGCGTGC 33 107 1 GCCCGTGCCG 0.92773 -147 * ******** * Masking position 4 Map Score: 56.2334 Number of sites scoring better than the average of aligned sites = 17008 Number in coding regions = 15766 Number in noncoding regions = 1242 Number of orfs with sites within 600 bp upstream = 740 Fraction of orfs with sites within 600 bp upstream = 0.118856 Motif number 7 TCGCAGTCGAGGGCTCTCGTGTAGCCTGGG 1 121 1 GGGCTCTCGT 0.919399 -98 GTCGGTCACCGAGCAATCGGTTGAAGGTCC 10 110 1 GAGCAATCGG 0.856662 -191 TCCTGGTGTGGGGTACTGGGTGA 11 4 0 GGGTACTGGG 0.9616 -33 ACGGGCCCGTGGGCACCGCTCCTCTAAGGG 12 244 1 GGGCACCGCT 0.78781 -57 GCTCCTCTAAGGGCTCTCGTTGGTCGCATG 12 261 1 GGGCTCTCGT 0.919399 -40 ACCCGGCCGCGGGTAACCGTGGCGGGGCAT 14 183 1 GGGTAACCGT 0.859998 -66 GTGAGGAGCCGAGCAATGGGTACAGCGAAG 16 25 1 GAGCAATGGG 0.752158 -206 ACCTGGCGCAGGGCAACCTGAACAGTATGC 17 14 0 GGGCAACCTG 0.903721 -287 GCGCCCGTGTGGGCGCTGGTCGTATGCCCG 17 55 0 GGGCGCTGGT 0.772605 -246 AGGAGGAGCAGGGCAATGCGGCCTAGCCCG 18 39 1 GGGCAATGCG 0.852116 -54 TGTCGCCGACGGGCACGCGGGGCCGACCAA 20 207 0 GGGCACGCGG 0.963878 -94 CGTGAAAACTGGGTAACCGGTTGTTAAAAT 24 129 1 GGGTAACCGG 0.950888 -78 CCATCTCGGCGGGCTGCCGGTGCGCCAGTG 25 36 0 GGGCTGCCGG 0.789444 -58 GGGGCACCCTTCCTTCGAAGC 27 102 0 GGGCACCCTT 0.87135 -11 TTGGGTTGGGGGGTACTCGGGGGGCGGCGC 30 27 0 GGGTACTCGG 0.980125 -125 CCGAGGGTGGGGGTACTCGGGGGGCGGCGC 30 67 0 GGGTACTCGG 0.980125 -85 ACGTCTGTGGGGGCACTCGGGGGCGGCGCC 30 98 0 GGGCACTCGG 0.993608 -54 ACGGCGATGCGGGTAATGTGGGTTGGCGGT 33 82 1 GGGTAATGTG 0.628728 -172 ********** Masking position 3 Map Score: 22.9279 Number of sites scoring better than the average of aligned sites = 3018 Number in coding regions = 2777 Number in noncoding regions = 241 Number of orfs with sites within 600 bp upstream = 221 Fraction of orfs with sites within 600 bp upstream = 0.0354963 Motif number 8 AATTTCCTCCTGCGTCCGCCTGGG 2 90 0 TCCTCCTGCG 0.911037 -14 ATGGTCCGTCTCCTCTTCAGGCCGTGCCTG 6 197 0 TCCTCTTCAG 0.858543 -104 CGGTGCTGCCTCGTCCTCCTGCGTGGGTCG 10 153 0 TCGTCCTCCT 0.772624 -148 AACCGGGCCAGCCTACTCGTATGGTTGTAT 16 141 0 GCCTACTCGT 0.710608 -90 ATTGCCCTGCTCCTCCTCATCGCTTCGCTC 18 26 0 TCCTCCTCAT 0.978433 -67 TTAGGGGACGACCTACTCAGCGCAAAATTT 20 127 0 ACCTACTCAG 0.731511 -174 GGTCCTGGCTGGCTCCTCCTACCGTGCACA 20 258 1 GGCTCCTCCT 0.754132 -43 CGAGCGCTACTCCTCCTCATCGCTTGCGGC 21 90 0 TCCTCCTCAT 0.978433 -74 CGAGCGCTACTCCTCCTCATCGCTTGCGCT 21 144 0 TCCTCCTCAT 0.978433 -20 TCTATCCTCCTGCGCAGCCCGGGG 23 147 0 TCCTCCTGCG 0.911037 -14 GTGTGGACTTTGCTACTCAGATCGACGCCG 24 165 0 TGCTACTCAG 0.57305 -42 GCGGGCCTCCTCGGGTATCGCGGT 24 193 0 GCCTCCTCGG 0.961016 -14 GACCTCCTCGTGTTCAACGCT 26 2 1 ACCTCCTCGT 0.916127 -160 CGTCCTCCTTATCGATAACAGT 27 3 1 TCCTCCTTAT 0.719654 -110 GCCGTCCGGCTCCTCCTCGGACCACTACGC 31 30 0 TCCTCCTCGG 0.981675 -186 CTGGGACCATACCTCCGCAGAGGAAGAGGA 31 186 1 ACCTCCGCAG 0.694059 -30 AGGTGGCGTTTCCTCTTCCTCTGCGGAGGT 31 196 0 TCCTCTTCCT 0.811638 -20 ********** Masking position 4 Map Score: 19.3019 Number of sites scoring better than the average of aligned sites = 590 Number in coding regions = 456 Number in noncoding regions = 134 Number of orfs with sites within 600 bp upstream = 142 Fraction of orfs with sites within 600 bp upstream = 0.0228076 Motif number 9 TGCCACGGATCGACCGTGGCCGCACACGACC 1 177 1 CACCGTGGCC 0.238476 -42 CGACAGCGAACAGCCAGTGCCTGGCAGGCCG 2 12 0 CGCCAGTGCC 0.920117 -92 CGTAGTGGGTTGGCCAGGGCCTGGTCTGGTC 6 50 1 TGCCAGGGCC 0.642754 -251 AGGGCCTGGTCTGGTCTTGCCTGCCAACCGC 6 65 1 CGGTCTTGCC 0.167602 -236 CGTAGCTCAACTGGCAGAGCAGCGGTCTCCA 6 103 1 CGGCAGAGCA 0.716867 -198 GTCTCCTCTTCAGGCCGTGCCTGCATCGTCG 6 189 0 CGGCCGTGCC 0.941387 -112 CTTCCAGTGTCCACCATGGCACATACCTATG 6 224 0 CACCATGGCA 0.51994 -77 AGCTACCCCGCGAGCCGTTCCGCTCTGGTGG 6 260 0 CAGCCGTTCC 0.569091 -41 CCCAGCAGGGCAGGCCACACAG 8 2 1 CAGCAGGGCA 0.88206 -50 GGCCCTCCCACGGGTAGGGCC 9 1 0 CGGTAGGGCC 0.88111 -66 TTTGGCTGACCGGACCGGGCCAGGCTATTGT 10 57 1 CGACCGGGCC 0.855494 -244 AGCATCCCGGCGACCCACGCAGGAGGACGAG 10 143 1 CACCCACGCA 0.372831 -158 GGAACTAGGCCGGCGCGCGCCGGCGGTGCTG 10 175 0 CGCGCGCGCC 0.855514 -126 CCGTCTGCGACCACCCGGGAACGACGAACGC 10 232 0 CACCCGGGAA 0.299447 -69 TCGAGATCGCCAGCTAGCGCCGATATCCGGG 12 12 1 CGCTAGCGCC 0.78233 -289 CGCCGCCAGTCTGGCAGGTCAAAGCGGGCGT 14 29 0 CGGCAGGTCA 0.8553 -220 TTCTGTTTGTCGGCCATGCCCCGCCACGGTT 14 197 0 CGCCATGCCC 0.410733 -52 GCCGGTTAGCCAGCCAGGGCGCAAACCGACA 15 16 1 CGCCAGGGCG 0.885722 -65 AGGTTTGCGTCTGGCCGGGCATACGACCAGC 17 40 1 CGGCCGGGCA 0.978862 -261 GCCGGGCATACGACCAGCGCCCACACGGGCG 17 53 1 CACCAGCGCC 0.903314 -248 AAGGGTGGGACCGGACGCGCCCGTGTGGGCG 17 70 0 CGGACGCGCC 0.509912 -231 GCGCGCCGATCGACCCGGTCCTTCTGGACCG 17 227 0 CACCCGGTCC 0.929812 -74 TACCTCACTCCCACTCGAGCCCGTATCCGGG 17 272 0 CACTCGAGCC 0.427546 -29 GCGATGAGGAGGAGCAGGGCAATGCGGCCTA 18 33 1 GAGCAGGGCA 0.300106 -60 CTCTCGTCGCCGGGCTAGGCCGCATTGCCCT 18 48 0 CGGCTAGGCC 0.395604 -45 ATCCGGTATCCGGGTAGATCATGATCGACAT 20 58 1 CGGTAGATCA 0.0741072 -243 TGAGTCCGCCCCACCAGGGCAGATCAACCCA 20 88 0 CACCAGGGCA 0.914621 -213 TAGGAGGAGCCAGCCAGGACCATCCCTGACG 20 248 0 CGCCAGGACC 0.71656 -53 GTGCACACGTCAACCAGGTCAGGAGATCTA 20 281 1 CACCAGGTCA 0.731976 -20 GCATCGTCGTCAGCGCGGTCATATGTTCTAG 21 24 0 CGCGCGGTCA 0.633639 -140 GCATCGTCGTCAGCGCGGTCATCGAGCGCTA 21 111 0 CGCGCGGTCA 0.633639 -53 CGGCCCGGAACGGGCCAGTCCATACCAGCTG 23 41 1 CGGCCAGTCC 0.714049 -120 AAGATGACCCCGGGCTGCGCAGGAGGATAGA 23 140 1 CGGCTGCGCA 0.511602 -21 GCCGGGCTCGCTACCCTGTCCCAATGCGACG 24 23 0 CACCCTGTCC 0.587069 -184 CGATGGCGTGCCGCCAGCGCGCCGGTTGATG 24 53 1 CGCCAGCGCG 0.724074 -154 CCGGATGGTTCCGCTCGGGCCGATTCTGATG 24 98 1 CGCTCGGGCC 0.95496 -109 CAGCCCGAGCCGTCAGCCTAG 25 1 1 CGCCCGAGCC 0.949169 -93 TTGTGCAGCCCAGCCCGCGAAATCGG 28 52 0 CGCCCAGCCC 0.530564 -16 TCCATCGATGCCAGCCGCTCATTGGTGCTGG 31 81 0 CAGCCGCTCA 0.563195 -135 CGCCCGGACGGAGGCCGGGCCCCACACCCAA 31 130 1 GGGCCGGGCC 0.872542 -86 GGTATGGTCCCAGTCCGTTCCCTGCCCAAAA 31 168 0 CGTCCGTTCC 0.168791 -48 * ********* Masking position 10 Map Score: 43.5792 Number of sites scoring better than the average of aligned sites = 26998 Number in coding regions = 25294 Number in noncoding regions = 1704 Number of orfs with sites within 600 bp upstream = 907 Fraction of orfs with sites within 600 bp upstream = 0.145679 Motif number 10 GAGTGTCTATCTTTCCGTTTCTTGATTTGCAGTT 3 18 0 CTCTTCTCTG 0.963645 -24 CGCATGCTCCTTCGTTTACTAGCTACCCCGCG 6 279 0 TTCCTCTCTG 0.876227 -22 GTTTTCAGTCCTCTCTGTCACTCTCGAGCC 7 3 0 CTCTTCTCGG 0.956084 -29 GATGGGCGGTCCTTCCTGGTGTGGGGTACTGGGT 11 13 0 CTCCTCGGTG 0.868973 -24 GGCCGGCGAACGATCTGTCCGGATCTCACGCACGCAAC 12 181 0 CTCTTCGCTA 0.779535 -120 CTACCGGCTTTCTATCTTGGGCGCTTTCACGTTCT 14 224 0 CTCTTCGCGT 0.880065 -25 TGCTAGTTAGCTGTCTATCACTGTCGGTTTGCGCCCTG 15 30 0 CTCTTCTCGT 0.797855 -51 GAAGTCTTCCCACTCTTTCGGTTGCTAGTTAGCTGTCT 15 52 0 CTCTTCTCTG 0.963644 -29 ATTGCTCGGCTCCTCACTCGTGAGCTTGCGC 16 4 0 TTCATCGCTG 0.595084 -227 CCGATCGACCCGGTCCTTCTGGACCGATCTAGCGTTGC 17 215 0 CTCCTCGCGT 0.921727 -86 CTAATCAGGTCTTTCTCTCACGCTCTCGTCGCCGGGCT 18 63 0 CTCTTCGCTG 0.980111 -30 CCAGCCAGGACCATCCCTGACGTGCGCGGTCTTTGTCG 20 232 0 CTCCTGGCGG 0.844887 -69 CGGCGTTGTCCGTCTTCGGCTCGATATCGCCTA 28 6 1 TTCCTCCCTG 0.800351 -62 AGTTGTCGGGCCGTCCGGCTCCTCCTCGGACCACTACG 31 31 0 CTCCGCCCTG 0.765711 -185 TACTTTCTGGCGATCCTTCTCTTCCTTGTCGGTGCACC 33 226 0 CTCCTCTCTG 0.977031 -28 * *** ** * ** * Masking position 4 Map Score: 11.8298 Number of sites scoring better than the average of aligned sites = 656 Number in coding regions = 604 Number in noncoding regions = 52 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 11 CACCTCCTGTGGTCGTGTGCGGCCACGGTC 1 188 0 GGTCGTGTGC 0.143071 -31 GTTGAGCTACGCCCCTTCGCGGTTGGCAGG 6 84 0 GCCCCTTCGC 0.830834 -217 TTACTAGCTACCCCGCGAGCCGTTCCGCTC 6 266 0 CCCCGCGAGC 0.821502 -35 AAGACCGTCGGTCACCGAGCAATCGGTTGA 10 104 1 GTCACCGAGC 0.360782 -197 AGGCAGCACCGCCGGCGCGCGCCGGCCTAG 10 172 1 GCCGGCGCGC 0.985334 -129 GTCGAGATCGCCAGCTAGCGCCGATATCC 12 10 1 GCCAGCTAGC 0.847639 -291 GTGCCCACGGGCCCGTTCGCCGCGATAATT 12 230 0 GCCCGTTCGC 0.957272 -71 GAAGCGCCGGTTAGCCAGCCAGGGC 15 6 1 GCCGGTTAGC 0.91342 -75 CGGTTAGCCAGCCAGGGCGCAAACCGACAG 15 18 1 GCCAGGGCGC 0.945573 -63 TCTTTCGGTTGCTAGTTAGCTGTCTATCAC 15 47 0 GCTAGTTAGC 0.741307 -34 TCGGCTCCTCACTCGTGAGCTTGCGC 16 7 0 ACTCGTGAGC 0.489988 -224 GAAGACGACCGCTAGTGAGCGAAGCTCACG 16 77 1 GCTAGTGAGC 0.855572 -154 GCTGCTCATTGCTCGTGAGCTTCGCTCACT 16 90 0 GCTCGTGAGC 0.791557 -141 CGGGCGACACGCCCGAGCGCGGGGCCGGTG 17 149 1 GCCCGAGCGC 0.894813 -152 CGATCGGCGCGCCGGGGAGCACCGGACCCG 17 246 1 GCCGGGGAGC 0.914654 -55 GCAGACCTCGGCCGGCGCGCATAAGCTTTG 20 176 1 GCCGGCGCGC 0.985334 -125 ATCGCTTGCGGCCCCCTCGCCGCTGCGCGT 21 72 0 GCCCCCTCGC 0.884458 -92 TAACCCCTTCGATAGCTCGCACCGTGGCGG 23 14 1 GATAGCTCGC 0.244297 -147 ATTGGGACAGGGTAGCGAGCCCGGCGATGG 24 29 1 GGTAGCGAGC 0.626338 -178 ATGGCGTGCCGCCAGCGCGCCGGTTGATGG 24 55 1 GCCAGCGCGC 0.980442 -152 CTGCCGGTGCGCCAGTGCGCCCTAGGCTGA 25 23 0 GCCAGTGCGC 0.980973 -71 ACGGTACAGTGCCACCTAGCTGTTGTCGAA 27 52 1 GCCACCTAGC 0.795236 -61 CCGGAATAGCACCGGTGAGCCGAGCGGTTA 33 19 0 ACCGGTGAGC 0.688256 -235 ********** Masking position 9 Map Score: 35.3526 Number of sites scoring better than the average of aligned sites = 8485 Number in coding regions = 7872 Number in noncoding regions = 613 Number of orfs with sites within 600 bp upstream = 437 Fraction of orfs with sites within 600 bp upstream = 0.0701895 Motif number 12 TGACATTGCGCACACGACACGCCGCGGATCGT 1 44 1 CCACGACCGC 0.951076 -175 CCCCAAGAACTGCAAATCAAGAA 3 2 1 CCAAGAATGC 0.865673 -40 CGCCGGGGCTCACATGACACGCGCGCCCTCCG 6 20 0 CCATGACCGC 0.988124 -281 GAGCAGCGGTCTCCAAAACCGCAGGTTGCAGG 6 119 1 CCCAAAACGC 0.718425 -182 CCCCGACTGCCACCAGACTTGCACCGTCAGGA 10 272 1 CCCAGACTGC 0.970043 -29 ACTTCCTGCCCACCTCACCCGCCACTTGACAC 12 108 1 CCCTCACCGC 0.966326 -193 TCTCGTTGGTCGCATGAAGTGCTGGAAGGATG 12 275 1 CCATGAATGC 0.894594 -26 CACGAGCAACCACAATACCCGCCGCCAGTCTG 14 47 0 CCAATACCGC 0.89773 -202 TCCGGTCCCACCCTTGAAGCGCGACGATTTCG 17 86 1 CCTTGAACGC 0.826454 -215 GGTTGGCTACTCCTGAAACTCCCTAGATCTG 19 20 0 CCCTGAACTC 0.706999 -21 GCCAGGACCATCCCTGACGTGCGCGGTCTTTG 20 235 0 TCCTGACTGC 0.706999 -66 TAGATCTCCTGACCTGGTTGACGTGTG 20 284 0 CCCTGACTGG 0.781483 -17 GTGGGGGTACCCCCAGACGCGCAGCGGCGAGG 21 56 1 CCCAGACCGC 0.990233 -108 GCATCACGCGCCCAACACCCGCAGGCCAGGAC 23 108 0 CCAACACCGC 0.931404 -53 ACCGCCAACCCACATTACCCGCATCGCCGTGC 33 80 0 CCATTACCGC 0.920384 -174 * ****** *** Masking position 7 Map Score: 16.5651 Number of sites scoring better than the average of aligned sites = 1331 Number in coding regions = 1187 Number in noncoding regions = 144 Number of orfs with sites within 600 bp upstream = 153 Fraction of orfs with sites within 600 bp upstream = 0.0245744 Motif number 13 TCAGTCCTCTCTGTCACTCTCGAGCC 7 6 0 CTTCACTCTC 0.944303 -26 CCACAATAGCCTGGCCCGGTCCGGTCAGCCA 10 59 0 CTGCCCGGTC 0.945002 -242 TGCCACCAGACTTGCACCGTCAGGAGGTATG 10 279 1 CTGCACCGTC 0.930295 -22 ATCTTGGGCGCTTTCACGTTCTGTTTGTCGG 14 215 0 CTTCACGTTC 0.927735 -34 AGTTAGCTGTCTATCACTGTCGGTTTGCGCC 15 33 0 CTTCACTGTC 0.975716 -48 TCAGGTCTTTCTCTCACGCTCTCGTCGCCGG 18 66 0 CTTCACGCTC 0.972235 -27 CCAGGCTTCCCTATCGCTGTCAACGCAGCCC 25 65 0 CTTCGCTGTC 0.936271 -29 GACTGTCTCGGTCCTGTTCTATG 32 20 0 CTTCTCGGTC 0.953429 -13 ** ******** Masking position 2 Map Score: 3.92467 Number of sites scoring better than the average of aligned sites = 70 Number in coding regions = 63 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 14 CACCGCACTCCAGGCTTAACCCGGTGCGACGATC 1 70 0 CACTTACCGG 0.936773 -149 CCGCCGAACCCAGGCGGACGCAGGAGGAAATT 2 82 1 CACGGCCAGG 0.810594 -22 GCAGGCCACACAGGCTGAAACAAGGAAGGACATC 8 20 1 CACTGACAAG 0.329174 -32 GCCCCTACATCAAGCGTAAGCCGCCAGGCACGAG 14 73 0 CACGTACCGC 0.874818 -176 CTATGCGACACACCCGGCCGCGGGTAACCGTGGC 14 172 1 CACGGCCGGG 0.911876 -77 CTCGGCTCCTCACTCGTGAGCTTGCGC 16 4 0 CACGTACTTG 0.39335 -227 AGTTATGCCGCGGTCGTAACCGGGCCAGCCTACT 16 154 0 CGCGTACGGG 0.77296 -77 TATGCCCGGCCAGACGCAAACCTGGCGCAGGGCA 17 29 0 CACGCACCTG 0.87776 -272 ACTCCCACTCGAGCCCGTATCCGGGTCCGGTGCT 17 263 0 GACCGACCGG 0.675081 -38 CGCTACCGCCAATCCGGTATCCGGGTAGATCATG 20 47 1 AACGGACCGG 0.958247 -254 TTGCCGTGAGCAGACCTCGGCCGGCGCGCATAAG 20 167 1 CACCTGCCGG 0.865591 -134 TCCTACCGTGCACACGTCAACCAGGTCAGGAGAT 20 274 1 CACGTACCAG 0.955362 -27 ACGCGCCCAACACCCGCAGGCCAGGACGTACGGC 23 101 0 CACGCGCCAG 0.839774 -60 TTGATGGGGTCACCCGTGATCCGGATGGTTCCGC 24 78 1 CACGTACCGG 0.990729 -129 GATGCGTGAAAACTGGGTAACCGGTTGTTAAAAT 24 125 1 AAGGGACCGG 0.60023 -82 CCTCGTGTTCAACGCTGAACCCAGACCCTGGACC 26 16 1 AACTGACCAG 0.396548 -146 CATTCACGCCCGGACGGAGGCCGGGCCCCACACC 31 124 1 CGCGGGCCGG 0.932739 -92 CGCCGTAGGCCACGCGCTCACCGGAATAGCACCG 33 35 0 CACGCCCCGG 0.963194 -219 GCTCGGACTACAAACGTGAGCCGGTGGTGGAAAT 33 173 0 CACGTACCGG 0.990725 -81 ** *** * **** Masking position 11 Map Score: 13.6982 Number of sites scoring better than the average of aligned sites = 4576 Number in coding regions = 4218 Number in noncoding regions = 358 Number of orfs with sites within 600 bp upstream = 303 Fraction of orfs with sites within 600 bp upstream = 0.0486669 Motif number 15 GCGAAAATGCCGACCAGGCACCACCGCACT 1 95 0 CGACCAGGCA 0.980155 -124 GCACCGACAGCGAACAGCCAGTGCCTGGCA 2 17 0 CGAACAGCCA 0.914572 -87 AAGAAGAACACGACCAGCCGCCGAACCCAG 2 65 1 CGACCAGCCG 0.98916 -39 GTGCCGTCTGCGACCACCCGGGAACGACGA 10 236 0 CGACCACCCG 0.955597 -65 GCACTTCATGCGACCAACGAGAGCCCTTAG 12 267 0 CGACCAACGA 0.919448 -34 CCGCCAGGCACGAGCAACCACAATACCCGC 14 57 0 CGAGCAACCA 0.861156 -192 AGGCGACGGGCGACTAGGCGATGCGAAGAC 16 53 1 CGACTAGGCG 0.818394 -178 GCCGGGCATACGACCAGCGCCCACACGGGC 17 53 1 CGACCAGCGC 0.914363 -248 CACGCGGGGCCGACCAAGCAAAGCTTATGC 20 194 0 CGACCAAGCA 0.950769 -107 ********** Masking position 6 Map Score: 7.2954 Number of sites scoring better than the average of aligned sites = 1991 Number in coding regions = 1851 Number in noncoding regions = 140 Number of orfs with sites within 600 bp upstream = 130 Fraction of orfs with sites within 600 bp upstream = 0.0208802