AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i199_trans1_mtub_reg_300.orf -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 ponA 300 ponA #2 Rv0052 31 hypothetical protein Rv0052 #3 rpsF 218 rpsF #4 ssb 103 ssb #5 rpsR 41 rpsR #6 rplI 32 rplI #7 Rv0057 28 hypothetical protein Rv0057 #8 secE 300 secE #9 nusG 31 nusG #10 rplK 51 rplK #11 rplA 66 rplA #12 rplJ 300 rplJ #13 rplL 36 rplL #14 rpoB 300 rpoB #15 rpoC 44 rpoC #16 Rv0681 300 hypothetical protein Rv0681 #17 rpsL 248 rpsL #18 fusA 80 fusA #19 tuf 230 tuf #20 rpsJ 300 rpsJ #21 rplB 92 rplB #22 rpsS 40 rpsS #23 rplN 300 rplN #24 rpsH 163 rpsH #25 rplF 23 rplF #26 secY 160 secY #27 Rv1284 206 hypothetical protein Rv1284 #28 cysD 93 cysD #29 modA 161 modA #30 rpmB2 112 rpmB2 #31 truA 67 truA #32 rplQ 31 rplQ #33 rpoA 151 rpoA #34 rpsM 215 rpsM #35 rpmJ 32 rpmJ #36 infA 253 infA Motif number 1 ********** No masking Map Score: 2.40407e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 2 ***** ***** No masking Map Score: -2.19722 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 3 CCGATCGGCTCCGCACGCGGACTCCATCGA 1 13 1 CCGCACGCGG 0.799434 -288 AGGCGGTCAAGGCCGCGCTCGACGGCGCGC 1 42 1 GGCCGCGCTC 0.756116 -259 GGGGCATCGGCGGCGCGCCGTCGAGCGCGG 1 54 0 CGGCGCGCCG 0.499987 -247 TGCCCCCGCCGCGCGACCCGCTCGAGGAGG 1 78 1 GCGCGACCCG 0.981824 -223 CGGCCGCGTTGGCCGCCCCGCCCGGTAAAC 1 111 1 GGCCGCCCCG 0.993306 -190 CCGCCCCGCCCGGTAAACCGCCGCGGGGGG 1 123 1 CGGTAAACCG 0.654177 -178 CCAAGCTGATCCCCCCGCGGCGGTTTACCG 1 133 0 CCCCCCGCGG 0.860975 -168 TGGCAGACGTCGCCCACCGGGGCCGCCCGG 1 163 1 CGCCCACCGG 0.914074 -138 CGCCCACCGGGGCCGCCCGGGCCCCCCGGT 1 173 1 GGCCGCCCGG 0.986512 -128 GGCAGCCGGCCGGCAGGCTGTCCGGACGAA 1 202 0 CGGCAGGCTG 0.791107 -99 CCCTCGGTTGGGGCAGCCGGCCGGCAGGCT 1 213 0 GGGCAGCCGG 0.955174 -88 CAGTTGATCTGGCCGACCCGGGGCAAGTCC 1 244 0 GGCCGACCCG 0.988521 -57 CACCTCGTAGGGGCCAACCGCG 2 3 0 GGGCCAACCG 0.740359 -29 GTTCGCGATAGGCCTCGCCGTTCGCGACAC 3 14 1 GGCCTCGCCG 0.765144 -205 CACTGACATTGCGCACACGACACGCCGCGG 3 41 1 GCGCACACGA 0.451729 -178 AGGCTTAACCCGGTGCGACGATCCGCGGCG 3 63 0 CGGTGCGACG 0.809442 -156 CTCTCGTGTAGCCTGGGCGAGTTGCCGACG 3 134 1 GCCTGGGCGA 0.550613 -85 CACGGTCGATCCGTGGCAGGAGGGTCGCCT 3 165 0 CCGTGGCAGG 0.622728 -54 CACGGATCGACCGTGGCCGCACACGACCAC 3 180 1 CCGTGGCCGC 0.633309 -39 TCGGCCTGCCAGGCACTGGCTGT 4 4 1 GCCTGCCAGG 0.692112 -100 TGTTCTTCTTCGCCGAGCCTACGTAACCGC 4 45 0 CGCCGAGCCT 0.665597 -59 CACGACCAGCCGCCGAACCCAGGCGGACGC 4 73 1 CGCCGAACCC 0.839518 -31 ACCGAACGGAGGGCGCGCGTGTCATGTGAG 8 14 1 GGGCGCGCGT 0.580622 -287 ACCAGGCCCTGGCCAACCCACTACGCCGGG 8 45 0 GGCCAACCCA 0.858505 -256 CCTTCAGCAGGGGCGACAGGACTTGAACCT 8 148 0 GGGCGACAGG 0.910602 -153 CTGGAAGGTGCCCCACCAGAGCGGAACGGC 8 248 1 CCCCACCAGA 0.450385 -53 ACTAGCTACCCCGCGAGCCGTTCCGCTCTG 8 264 0 CCGCGAGCCG 0.584305 -37 CCCAGCAGGGCAGGCCACACAGGCTGA 10 8 1 GGGCAGGCCA 0.895269 -44 GGCCCTACCCGTGGGAGGGCCAGCTTCG 11 9 1 CCGTGGGAGG 0.645308 -58 GGGCCAGCTTCGGCCCGCTGAGTAACCACG 11 27 1 CGGCCCGCTG 0.621682 -40 AATCCCGCGACGCCGCACCGG 12 2 0 CGCCGCACCG 0.899325 -299 TCAGCCAAAACGGCGACACGTATCGCCGAG 12 36 0 CGGCGACACG 0.957165 -265 TCGCCGTTTTGGCTGACCGGACCGGGCCAG 12 50 1 GGCTGACCGG 0.893933 -251 AACCACAATAGCCTGGCCCGGTCCGGTCAG 12 62 0 GCCTGGCCCG 0.92978 -239 ACCGATTGCTCGGTGACCGACGGTCTTCGG 12 101 0 CGGTGACCGA 0.614419 -200 GGGAGCATCCCGGCGACCCACGCAGGAGGA 12 140 1 CGGCGACCCA 0.942132 -161 AACTAGGCCGGCGCGCGCCGGCGGTGCTGC 12 174 0 GCGCGCGCCG 0.50827 -127 TAGTTCCACGCCCCGACCGCTTCCTGCGTC 12 199 1 CCCCGACCGC 0.873814 -102 GAACGACGAACGCCCCGACGCAGGAAGCGG 12 215 0 CGCCCCGACG 0.912007 -86 GTGGCAGTCGGGGTACGACGTGCCGTCTGC 12 255 0 GGGTACGACG 0.783632 -46 TCACCCAGTACCCCACACCAGGAAGGACCG 13 11 1 CCCCACACCA 0.631767 -26 TCCAACAATAGCGCAGGACGGCGCATTCCT 14 65 0 GCGCAGGACG 0.882375 -236 GCAACTAAACCGCTGAGCCGCAAACTGGGC 14 156 0 CGCTGAGCCG 0.952312 -145 ACAGATCGTTCGCCGGCCGAAACCGACAAA 14 201 1 CGCCGGCCGA 0.897614 -100 AAAATTATCGCGGCGAACGGGCCCGTGGGC 14 228 1 CGGCGAACGG 0.669261 -73 GCTCAATCAAGGCCCGACCAAGGCTCAGTC 16 41 0 GGCCCGACCA 0.497786 -260 GTCTGTCGTCGCCCGGGCGAATGCACGTAC 16 71 0 GCCCGGGCGA 0.85744 -230 GACGCGGGGTGCCTGCCCGGCAAATGCACT 16 104 0 GCCTGCCCGG 0.905893 -197 AAGCCGATCACCCCAACCGAAGGGCGAACC 16 212 1 CCCCAACCGA 0.662416 -89 CCCAACCGAAGGGCGAACCGCCATGGCAGC 16 223 1 GGGCGAACCG 0.801906 -78 CGGTGCTTGCGGCTGAGCTGCCATGGCGGT 16 239 0 GGCTGAGCTG 0.587153 -62 CGCGCGCGGGCGGCCGCCCGCTGACGGTGC 16 263 0 CGGCCGCCCG 0.906113 -38 GGGCGGCCGCCCGCGCGCGGGGAAAGCGGT 16 274 1 CCGCGCGCGG 0.499864 -27 GCCCTGCTTCGGCCGCAACGCCCGCTTTGA 17 12 1 GGCCGCAACG 0.894085 -237 CCTACATCAAGCGTAAGCCGCCAGGCACGA 17 74 0 GCGTAAGCCG 0.846728 -175 CCACGGTTACCCGCGGCCGGGTGTGTCGCA 17 175 0 CCGCGGCCGG 0.942469 -74 GTCGGCCATGCCCCGCCACGGTTACCCGCG 17 190 0 CCCCGCCACG 0.960363 -59 CGCCCTGGCTGGCTAACCGGCGCTTC 18 7 0 GGCTAACCGG 0.777262 -74 GCCAGCCAGGGCGCAAACCGACAGTGATAG 18 24 1 GCGCAAACCG 0.848975 -57 CATACGAGTAGGCTGGCCCGGTTACGACCG 19 148 1 GGCTGGCCCG 0.953977 -83 GTTCAGGTTGCCCTGCGCCAGGTTTGCGTC 20 21 1 CCCTGCGCCA 0.80273 -280 GTCGTATGCCCGGCCAGACGCAAACCTGGC 20 37 0 CGGCCAGACG 0.8521 -264 ATACGACCAGCGCCCACACGGGCGCGTCCG 20 60 1 CGCCCACACG 0.837985 -241 CGCGCTTCAAGGGTGGGACCGGACGCGCCC 20 79 0 GGGTGGGACC 0.58529 -222 GGCTGTGTGCGGGCGACACGCCCGAGCGCG 20 140 1 GGGCGACACG 0.954968 -161 TAGGTCCACCGGCCCCGCGCTCGGGCGTGT 20 155 0 GGCCCCGCGC 0.801608 -146 GCGCAGTATTCGGCGCAACGCTAGATCGGT 20 201 1 CGGCGCAACG 0.812054 -100 CGGTGCTCCCCGGCGCGCCGATCGACCCGG 20 240 0 CGGCGCGCCG 0.499987 -61 CTCGTCGCCGGGCTAGGCCGCATTGCCCTG 21 47 0 GGCTAGGCCG 0.906733 -46 TGTGAGTCCGCCCCACCAGGGCAGATCAAC 23 91 0 CCCCACCAGG 0.828122 -210 GGTCTGCTCACGGCAACCCCTGAAGTTTAG 23 153 0 CGGCAACCCC 0.907847 -148 AAGCTTATGCGCGCCGGCCGAGGTCTGCTC 23 174 0 GCGCCGGCCG 0.54057 -127 TGTCGCCGACGGGCACGCGGGGCCGACCAA 23 207 0 GGGCACGCGG 0.871771 -94 GACGTGTGCACGGTAGGAGGAGCCAGCCAG 23 262 0 CGGTAGGAGG 0.547915 -39 AGTGGGGGTACCCCCAGACGCGCAGCGGCG 24 55 1 CCCCCAGACG 0.78911 -109 CGCTTGCGGCCCCCTCGCCGCTGCGCGTCT 24 70 0 CCCCTCGCCG 0.671379 -94 GGCGAGGGGGCCGCAAGCGATGAGGAGGAG 24 81 1 CCGCAAGCGA 0.700906 -83 ACGATGCAGAGCGCAAGCGATGAGGAGGAG 24 135 1 GCGCAAGCGA 0.689704 -29 GCCCGTTCCGGGCCGCCACGGTGCGAGCTA 26 26 0 GGCCGCCACG 0.972959 -135 ACACGATTTGGCGCGCGACGCCGTACGTCC 26 82 1 GCGCGCGACG 0.901612 -79 AACACCCGCAGGCCAGGACGTACGGCGTCG 26 97 0 GGCCAGGACG 0.917678 -64 TGCATCACGCGCCCAACACCCGCAGGCCAG 26 111 0 GCCCAACACC 0.569358 -50 CTATCCTCCTGCGCAGCCCGGGGTCATCTT 26 140 0 GCGCAGCCCG 0.965914 -21 GGCACGCCATCGCCGGGCTCGCTACCCTGT 27 35 0 CGCCGGGCTC 0.683532 -172 GGCGCGCTGGCGGCACGCCATCGCCGGGCT 27 46 0 CGGCACGCCA 0.92929 -161 CCCCATCAACCGGCGCGCTGGCGGCACGCC 27 57 0 CGGCGCGCTG 0.69657 -150 TCCGGATCACGGGTGACCCCATCAACCGGC 27 73 0 GGGTGACCCC 0.820959 -134 ATCAGAATCGGCCCGAGCGGAACCATCCGG 27 98 0 GCCCGAGCGG 0.966872 -109 CGTGAAAACTGGGTAACCGGTTGTTAAAAT 27 129 1 GGGTAACCGG 0.786291 -78 CAGCCCGAGCCGTCAGCCTAGG 28 3 1 GCCCGAGCCG 0.982932 -91 CGTCAGCCTAGGGCGCACTGGCGCACCGGC 28 21 1 GGGCGCACTG 0.713287 -73 ACTGGCGCACCGGCAGCCCGCCGAGATGGG 28 37 1 CGGCAGCCCG 0.97866 -57 TCGTGTTCAACGCTGAACCCAGACCCTGGA 29 18 1 CGCTGAACCC 0.518912 -144 TGAACCCAGACCCTGGACCGTTGCCTGGAA 29 31 1 CCCTGGACCG 0.764548 -131 AACTCCGCACCGCCACGACGCGCAGACGAT 29 118 1 CGCCACGACG 0.946784 -44 GCTCGATATCGCCTACGACGGAACCGATTT 31 29 1 GCCTACGACG 0.68704 -39 TTGTGCAGCCCAGCCCGCGAAATCGGT 31 51 0 GCCCAGCCCG 0.964182 -17 ACTCGGGGGGCGGCGCCCCCCGAGGGTTGG 33 13 0 CGGCGCCCCC 0.757958 -139 CCCGAGTACCCCCCAACCCAACCCTCGGGG 33 36 1 CCCCAACCCA 0.803371 -116 ACTCGGGGGGCGGCGCCCCCCGAGGGTTGG 33 53 0 CGGCGCCCCC 0.757958 -99 CCCCGAGTACCCCCACCCTCGGGGGCGCCG 33 75 1 CCCCACCCTC 0.433107 -77 CACTCGGGGGCGGCGCCCCCGAGGGTGGGG 33 85 0 CGGCGCCCCC 0.757958 -67 AGGAGCCGGACGGCCCGACAACTAAATGCA 34 46 1 CGGCCCGACA 0.651797 -170 AAATGCAGACCCCCAGCACCAATGAGCGGC 34 69 1 CCCCAGCACC 0.62221 -147 AGCTCATTCACGCCCGGACGGAGGCCGGGC 34 120 1 CGCCCGGACG 0.873569 -96 CCCGGACGGAGGCCGGGCCCCACACCCAAA 34 132 1 GGCCGGGCCC 0.942608 -84 GGAATAGCACCGGTGAGCCGAGCGGTTAGA 36 17 0 CGGTGAGCCG 0.644785 -237 AAACGCCGTAGGCCACGCGCTCACCGGAAT 36 42 0 GGCCACGCGC 0.895869 -212 GCCGTGCTCTGCGCAAAACGCCGTAGGCCA 36 57 0 GCGCAAAACG 0.568371 -197 GACACCGCACCGCCAACCCACATTACCCGC 36 90 0 CGCCAACCCA 0.864813 -164 TTTCAAAACTGGGCACGCCAAACCGGCACG 36 121 0 GGGCACGCCA 0.927746 -133 CCCGATTCCGGCGCAGCACGTGCTCGGACT 36 198 0 GCGCAGCACG 0.868884 -56 CGCCGGAATCGGGTGCACCGACAAGGAAGA 36 215 1 GGGTGCACCG 0.547797 -39 ********** Masking position 4 Map Score: 163.3 Number of sites scoring better than the average of aligned sites = 116523 Number in coding regions = 108190 Number in noncoding regions = 8333 Number of orfs with sites within 600 bp upstream = 1773 Fraction of orfs with sites within 600 bp upstream = 0.284774 Motif number 4 GAGTCCGCGTGCGGAGCCGATCGGTC 1 7 0 GCGGAGCCGA 0.911565 -294 GCGGACTCCATCGAGGCGGTCAAGGCCGCG 1 29 1 TCGAGGCGGT 0.575525 -272 GCGGTCAAGGCCGCGCTCGACGGCGCGCCG 1 44 1 CCGCGCTCGA 0.387851 -257 GCTCGACGGCGCGCCGCCGATGCCCCCGCC 1 58 1 GCGCCGCCGA 0.589678 -243 AGCGGGTCGCGCGGCGGGGGCATCGGCGGC 1 70 0 GCGGCGGGGG 0.525724 -231 CGCGACCCGCTCGAGGAGGTCACGGCCGCG 1 89 1 TCGAGGAGGT 0.476959 -212 GGTTTACCGGGCGGGGCGGCCAACGCGGCC 1 112 0 GCGGGGCGGC 0.530778 -189 GCCCGGTAAACCGCCGCGGGGGGATCAGCT 1 130 1 CCGCCGCGGG 0.531185 -171 GGGGGCCCGGGCGGCCCCGGTGGGCGACGT 1 169 0 GCGGCCCCGG 0.512414 -132 GGCCGCCCGGGCCCCCCGGTTCGTCCGGAC 1 183 1 GCCCCCCGGT 0.751634 -118 CGGACAGCCTGCCGGCCGGCTGCCCCAACC 1 208 1 GCCGGCCGGC 0.456114 -93 GTTGATCTGGCCGACCCGGGGCAAGTCCAC 1 242 0 CCGACCCGGG 0.610051 -59 CGCCGCGGTGAGGTACAGCGAACG 1 287 0 GCGGTGAGGT 0.804677 -14 CCGCTGCAGCACCTCGTAGG 2 22 0 CCGCTGCAGC 0.565494 -10 CACTGACATTGCGCACACGACACGCCGCGG 3 41 1 GCGCACACGA 0.801868 -178 GGTGCGACGATCCGCGGCGTGTCGTGTGCG 3 52 0 TCCGCGGCGT 0.315693 -167 CCGCGGATCGTCGCACCGGGTTAAGCCTGG 3 65 1 TCGCACCGGG 0.622105 -154 TGCGAAAATGCCGACCAGGCACCACCGCAC 3 96 0 CCGACCAGGC 0.781585 -123 GTCGGCATTTTCGCAGTCGAGGGCTCTCGT 3 111 1 TCGCAGTCGA 0.243643 -108 CGTCGGCAACTCGCCCAGGCTACACGAGAG 3 134 0 TCGCCCAGGC 0.569575 -85 GGGCGAGTTGCCGACGCAGGCGACCCTCCT 3 148 1 CCGACGCAGG 0.837682 -71 GTGGTCGTGTGCGGCCACGGTCGATCCGTG 3 180 0 GCGGCCACGG 0.903382 -39 CTGTTCGCTGTCGGTGCGGTTACGTAGGCT 4 30 1 TCGGTGCGGT 0.518489 -74 CGTAGGCTCGGCGAAGAAGAACACGACCAG 4 52 1 GCGAAGAAGA 0.544105 -52 AGCCGCCGAACCCAGGCGGACGCAGGAGGA 4 80 1 CCCAGGCGGA 0.645411 -24 TGTCATGTGAGCCCCGGCGTAGTGGGTTGG 8 33 1 GCCCCGGCGT 0.731827 -268 CCTGCCAACCGCGAAGGGGCGTAGCTCAAC 8 84 1 GCGAAGGGGC 0.734482 -217 AGGCGAACGTTCGACGACGATGCAGGCACG 8 175 1 TCGACGACGA 0.72139 -126 GCGAGCCGTTCCGCTCTGGTGGGGCACCTT 8 252 0 CCGCTCTGGT 0.255184 -49 CCCAGCAGGGCAGGCCACAC 10 1 1 CCCAGCAGGG 0.633535 -51 TGTGAATCCCGCGACGCCGCACCGG 12 6 0 GCGACGCCGC 0.540194 -295 TTTTGGCTGACCGGACCGGGCCAGGCTATT 12 56 1 CCGGACCGGG 0.847766 -245 ATCCCGGCGACCCACGCAGGAGGACGAGGC 12 146 1 CCCACGCAGG 0.647208 -155 AGGCCGGCGCGCGCCGGCGGTGCTGCCTCG 12 170 0 GCGCCGGCGG 0.517702 -131 GACGCAGGAAGCGGTCGGGGCGTGGAACTA 12 199 0 GCGGTCGGGG 0.797413 -102 GACGAACGCCCCGACGCAGGAAGCGGTCGG 12 211 0 CCGACGCAGG 0.837682 -90 TCCCGGGTGGTCGCAGACGGCACGTCGTAC 12 243 1 TCGCAGACGG 0.701674 -58 GCGCTAGCTGGCGATCTCGAC 14 2 0 GCGATCTCGA 0.381052 -299 AATTATCGCGGCGAACGGGCCCGTGGGCAC 14 230 1 GCGAACGGGC 0.582545 -71 ACCCGCCCAGTCGAAGGGGGGCC 16 4 0 TCGAAGGGGG 0.516708 -297 CAATCAAGGCCCGACCAAGGCTCAGTCAAG 16 38 0 CCGACCAAGG 0.649386 -263 GTCTGTCGTCGCCCGGGCGAATGCACGTAC 16 71 0 GCCCGGGCGA 0.536693 -230 AGTGCATTTGCCGGGCAGGCACCCCGCGTC 16 104 1 CCGGGCAGGC 0.742697 -197 AATGACTCTAGCGACCGGGTTGTGGAGTAG 16 143 0 GCGACCGGGT 0.744285 -158 GCCCTAACGTCCCCCGAAGACCGGTGCGGA 16 178 1 CCCCCGAAGA 0.523819 -123 CCCCCGAAGACCGGTGCGGACCCAAAGCCG 16 188 1 CCGGTGCGGA 0.872111 -113 CGGCTGAGCTGCCATGGCGGTTCGCCCTTC 16 230 0 GCCATGGCGG 0.67787 -71 GGGCGGCCGCCCGCTGACGGTGCTTGCGGC 16 256 0 CCGCTGACGG 0.899088 -45 CTTTCCCCGCGCGCGGGCGGCCGCCCGCTG 16 270 0 GCGCGGGCGG 0.534069 -31 CGCGGGGAAAGCGGTGAAGTCC 16 289 1 GCGGTGAAGT 0.482999 -12 GGCGTTGCGGCCGAAGCAGGGCG 17 4 0 CCGAAGCAGG 0.671809 -245 TCAAGCGTAAGCCGCCAGGCACGAGCAACC 17 68 0 GCCGCCAGGC 0.702399 -181 CCACGGTTACCCGCGGCCGGGTGTGTCGCA 17 175 0 CCGCGGCCGG 0.515468 -74 TCGGCCATGCCCCGCCACGGTTACCCGCGG 17 189 0 CCCGCCACGG 0.73647 -60 GAACGTGAAAGCGCCCAAGATAGAAAGCCG 17 225 1 GCGCCCAAGA 0.700883 -24 CGGTTAGCCAGCCAGGGCGCAAACCGACAG 18 18 1 GCCAGGGCGC 0.429588 -63 AATGGGTACAGCGAAGGCGACGGGCGACTA 19 39 1 GCGAAGGCGA 0.794823 -192 ACTAGGCGATGCGAAGACGACCGCTAGTGA 19 65 1 GCGAAGACGA 0.847683 -166 AATGAGCAGCGCGAAGGCGACTGGCGAGTA 19 110 1 GCGAAGGCGA 0.794823 -121 GCGGTCGTAACCGGGCCAGCCTACTCGTAT 19 149 0 CCGGGCCAGC 0.504911 -82 TTCAGTTATGCCGCGGTCGTAACCGGGCCA 19 161 0 CCGCGGTCGT 0.544739 -70 CACTAACAAGTCCAGGAGGACACAAAA 19 214 1 TCCAGGAGGA 0.346005 -17 TACGACCAGCGCCCACACGGGCGCGTCCGG 20 61 1 GCCCACACGG 0.697387 -240 AAGGGTGGGACCGGACGCGCCCGTGTGGGC 20 71 0 CCGGACGCGC 0.547803 -230 ACGCCCGAGCGCGGGGCCGGTGGACCTACG 20 157 1 GCGGGGCCGG 0.519695 -144 CAGGTAAACAGCGGCGCAGTATTCGGCGCA 20 188 1 GCGGCGCAGT 0.796418 -113 GGCGCGCCGATCGACCCGGTCCTTCTGGAC 20 229 0 TCGACCCGGT 0.521205 -72 GTCGATCGGCGCGCCGGGGAGCACCGGACC 20 244 1 GCGCCGGGGA 0.669106 -57 CCGGGGAGCACCGGACCCGGATACGGGCTC 20 257 1 CCGGACCCGG 0.829236 -44 TCACTCCCACTCGAGCCCGTATCCGGGTCC 20 269 0 TCGAGCCCGT 0.417659 -32 CCCGGCGACGATGCAGAGCGA 21 2 1 CCGGCGACGA 0.897023 -91 GCAGAGCGAAGCGATGAGGAGGAGCAGGGC 21 23 1 GCGATGAGGA 0.83526 -70 GCGGCCTAGCCCGGCGACGAGAGCGTGAGA 21 56 1 CCGGCGACGA 0.897023 -37 ATTGGCGGTAGCGCCCACGATCGTCGAGAT 23 30 0 GCGCCCACGA 0.910881 -271 GGCAGATCAACCCATGTCGATCATGATCTA 23 72 0 CCCATGTCGA 0.223932 -229 GTGAGTCCGCCCCACCAGGGCAGATCAACC 23 90 0 CCCACCAGGG 0.732376 -211 CTCACGGCAACCCCTGAAGTTTAGGGGACG 23 147 0 CCCCTGAAGT 0.187664 -154 CAAAGCTTATGCGCGCCGGCCGAGGTCTGC 23 176 0 GCGCGCCGGC 0.58501 -125 CGACGGGCACGCGGGGCCGACCAAGCAAAG 23 201 0 GCGGGGCCGA 0.576085 -100 GCGGTCTTTGTCGCCGACGGGCACGCGGGG 23 215 0 TCGCCGACGG 0.82602 -86 GCGACAAAGACCGCGCACGTCAGGGATGGT 23 231 1 CCGCGCACGT 0.734069 -70 GGTAGGAGGAGCCAGCCAGGACCATCCCTG 23 251 0 GCCAGCCAGG 0.461024 -50 ACATATGACCGCGCTGACGACGATGCAGTG 24 29 1 GCGCTGACGA 0.886097 -135 GTGGGGGTACCCCCAGACGCGCAGCGGCGA 24 56 1 CCCCAGACGC 0.590054 -108 CAGACGCGCAGCGGCGAGGGGGCCGCAAGC 24 69 1 GCGGCGAGGG 0.94564 -95 GGGGCCGCAAGCGATGAGGAGGAGTAGCGC 24 87 1 GCGATGAGGA 0.83526 -77 CTCGATGACCGCGCTGACGACGATGCAGAG 24 116 1 GCGCTGACGA 0.886097 -48 CAGAGCGCAAGCGATGAGGAGGAGTAGCGC 24 141 1 GCGATGAGGA 0.83526 -23 GTGCGAGCTATCGAAGGGGTTACAG 26 6 0 TCGAAGGGGT 0.275173 -155 TCGCACCGTGGCGGCCCGGAACGGGCCAGT 26 30 1 GCGGCCCGGA 0.644546 -131 GATTTGGCGCGCGACGCCGTACGTCCTGGC 26 86 1 GCGACGCCGT 0.919974 -75 ACACCCGCAGGCCAGGACGTACGGCGTCGC 26 96 0 GCCAGGACGT 0.653374 -65 ACCCCGGGCTGCGCAGGAGGATAGA 26 146 1 GCGCAGGAGG 0.669236 -15 CTGTCCCAATGCGACGCGGTGGTTGGGC 27 9 0 GCGACGCGGT 0.922588 -198 GGACAGGGTAGCGAGCCCGGCGATGGCGTG 27 33 1 GCGAGCCCGG 0.648214 -174 ATCAACCGGCGCGCTGGCGGCACGCCATCG 27 53 0 GCGCTGGCGG 0.885273 -154 TCAGAATCGGCCCGAGCGGAACCATCCGGA 27 97 0 CCCGAGCGGA 0.714152 -110 AAAATTCACCGCGGCGTCGATCTGAGTAGC 27 154 1 GCGGCGTCGA 0.501785 -53 CTCGGGTATCGCGGTGTGGACTTTGCTACT 27 178 0 GCGGTGTGGA 0.614821 -29 ACCGCGATACCCGAGGAGGCCCGC 27 193 1 CCGAGGAGGC 0.816882 -14 CAGCCCGAGCCGTCAGCCTAGGG 28 4 1 CCCGAGCCGT 0.613827 -90 GTGCGCCAGTGCGCCCTAGGCTGACGGCTC 28 17 0 GCGCCCTAGG 0.469262 -77 GGGCGCACTGGCGCACCGGCAGCCCGCCGA 28 31 1 GCGCACCGGC 0.808389 -63 CGGAGCTTACGCCATCACGATGCGATTCCA 29 56 0 GCCATCACGA 0.478694 -106 GCGCGTCGTGGCGGTGCGGAGTTTCCCCGA 29 111 0 GCGGTGCGGA 0.909924 -51 CCGCCACGACGCGCAGACGATCTTGGTAAC 29 127 1 GCGCAGACGA 0.889808 -35 TTTCATTATTGCGACGTCGACGGTACAGTG 30 33 1 GCGACGTCGA 0.602082 -80 CGATATCGAGCCGAAGACGGACAACGCCG 31 10 0 CCGAAGACGG 0.864529 -58 AACCGATTTCGCGGGCTGGGCTGCACAA 31 50 1 GCGGGCTGGG 0.483612 -18 GGGGCGGCGCCCCCCGAGGGTTGGGT 33 7 0 CCCCCGAGGG 0.867872 -145 GGGGCGGCGCCCCCCGAGGGTTGGGTTGGG 33 47 0 CCCCCGAGGG 0.867872 -105 GGGGGCGGCGCCCCCGAGGGTGGGGGTACT 33 80 0 CCCCCGAGGG 0.867872 -72 CTCGGGGGCGCCGCCCCCGAGTGCCCCCAC 33 92 1 CCGCCCCCGA 0.546128 -60 TTCGGCGACGATGCGGGCCGC 34 2 1 TCGGCGACGA 0.764433 -214 GCGTAGTGGTCCGAGGAGGAGCCGGACGGC 34 30 1 CCGAGGAGGA 0.858207 -186 TAGTTGTCGGGCCGTCCGGCTCCTCCTCGG 34 40 0 GCCGTCCGGC 0.570064 -176 GCGGCTGGCATCGATGGAGATGGGCCAGCT 34 94 1 TCGATGGAGA 0.123529 -122 GCTCATTCACGCCCGGACGGAGGCCGGGCC 34 121 1 GCCCGGACGG 0.870774 -95 GACCATACCTCCGCAGAGGAAGAGGAAACG 34 190 1 CCGCAGAGGA 0.840189 -26 GCACCGGTGAGCCGAGCGGTTAGAGCAACC 36 11 0 GCCGAGCGGT 0.686018 -243 GCAGAGCACGGCGATGCGGGTAATGTGGGT 36 75 1 GCGATGCGGG 0.924881 -179 ATGTGGGTTGGCGGTGCGGTGTCCCGTGCC 36 97 1 GCGGTGCGGT 0.86029 -157 GGTGCGGTGTCCCGTGCCGGTTTGGCGTGC 36 109 1 CCCGTGCCGG 0.759943 -145 TGGTGGAAATTCCGCGAAGGGCTCCGAGAA 36 153 0 TCCGCGAAGG 0.306911 -101 CGTTTGTAGTCCGAGCACGTGCTGCGCCGG 36 191 1 CCGAGCACGT 0.655496 -63 GCACCCGATTCCGGCGCAGCACGTGCTCGG 36 201 0 CCGGCGCAGC 0.71098 -53 ********** Masking position 2 Map Score: 156.68 Number of sites scoring better than the average of aligned sites = 113549 Number in coding regions = 106652 Number in noncoding regions = 6897 Number of orfs with sites within 600 bp upstream = 1686 Fraction of orfs with sites within 600 bp upstream = 0.2708 Motif number 5 GGCATCGGCGGCGCGCCGTCGAGCGCGGCCTTG 1 49 0 GGCCCGTCGG 0.872581 -252 GGTCGCGCGGCGGGGGCATCGGCGGCGCGCCGT 1 63 0 CGGGCATCGC 0.746656 -238 GTGACCTCCTCGAGCGGGTCGCGCGGCGGGGGC 1 79 0 CAGGGGTCGG 0.448495 -222 GAGGAGGTCACGGCCGCGTTGGCCGCCCCGCCC 1 101 1 CGCGCGTTGC 0.887456 -200 GCGGGGGGATCAGCTTGGTGGCAGACGTCGCCC 1 145 1 CGCTGGTGGA 0.595119 -156 CCCGGGCGGCCCCGGTGGGCGACGTCTGCCACC 1 161 0 CCGTGGGCGC 0.851667 -140 CCCGGGCCCCCCGGTTCGTCCGGACAGCCTGCC 1 188 1 CGGTCGTCCG 0.952487 -113 GACAGCCTGCCGGCCGGCTGCCCCAACCGAGGG 1 210 1 CGCGGCTGCC 0.314222 -91 GGGTGGACTTGCCCCGGGTCGGCCAGATCAACT 1 240 1 GCCGGGTCGC 0.799522 -61 ACGACACGCCGCGGATCGTCGCACCGGGTTAAG 3 57 1 GGGTCGTCGA 0.724344 -162 GAGTGCGGTGGTGCCTGGTCGGCATTTTCGCAG 3 94 1 GGCTGGTCGC 0.896181 -125 CGATCCGTGGCAGGAGGGTCGCCTGCGTCGGCA 3 156 0 CGGGGGTCGC 0.808619 -63 CCTGGGTTCGGCGGCTGGTCGTGTTCTTCTTCG 4 63 0 GGGTGGTCGG 0.846508 -41 AATTTCCTCCTGCGTCCGCCTGGGTTCGG 4 85 0 CCCGCGTCCC 0.924946 -19 GAACGGAGGGCGCGCGTGTCATGTGAGCCCCGG 8 17 1 CCGGTGTCAG 0.106109 -284 GTCATGTGAGCCCCGGCGTAGTGGGTTGGCCAG 8 34 1 CCCGCGTAGG 0.36431 -267 CGTTCGCCTTCAGCAGGGGCGACAGGACTTGAA 8 151 0 CGCGGGGCGC 0.878407 -150 CAGGCCGTGCCTGCATCGTCGTCGAACGTTCGC 8 177 0 CGCTCGTCGC 0.979417 -124 CGAGCCGTTCCGCTCTGGTGGGGCACCTTCCAG 8 248 0 CCTTGGTGGG 0.243474 -53 GTGGGAGGGCCAGCTTCGGCCCGCTGAGTAACC 11 21 1 CGCTCGGCCG 0.824793 -46 CCGGTGCGGCGTCGCGGGATTCACAC 12 4 1 GGCGCGTCGG 0.93962 -297 CGTGGGTCGCCGGGATGCTCCCGGACCTTCAAC 12 129 0 CGGTGCTCCG 0.468401 -172 GCCGGCGGTGCTGCCTCGTCCTCCTGCGTGGGT 12 155 0 CGCTCGTCCC 0.948103 -146 GACGAGGCAGCACCGCCGGCGCGCGCCGGCCTA 12 168 1 CCCCCGGCGG 0.749095 -133 CCCCGACCGCTTCCTGCGTCGGGGCGTTCGTCG 12 209 1 TCCGCGTCGG 0.568893 -92 TTCGTCGTTCCCGGGTGGTCGCAGACGGCACGT 12 235 1 CGGTGGTCGA 0.87578 -66 TTGAGGAATGCGCCGTCCTGCGCTATTGTTGGA 14 62 1 CCCTCCTGCC 0.251972 -239 TCGCGGCGAACGGGCCCGTGGGCACCGCTCCTC 14 235 1 CGGCCGTGGC 0.789318 -66 TCTAAGGGCTCTCGTTGGTCGCATGAAGTGCTG 14 266 1 CCGTGGTCGA 0.780067 -35 CAAGCATCACCCGCCCAGTCGAAGGGGGGCC 16 9 0 CGCCAGTCGA 0.293474 -292 CAAATGCACTCAGGTCTGTCGTCGCCCGGGCGA 16 81 0 CGGCTGTCGC 0.887794 -220 ACTCTAGCGACCGGGTTGTGGAGTAGCTGACAT 16 136 0 CGGTTGTGGG 0.666315 -165 TTTCCCCGCGCGCGGGCGGCCGCCCGCTGACGG 16 266 0 CCGGCGGCCC 0.745544 -35 CGCCCTGCTTCGGCCGCAACGCCCGCT 17 5 1 CGCTCGGCCC 0.836486 -244 ATTGTGGTTGCTCGTGCCTGGCGGCTTACGCTT 17 63 1 CCGGCCTGGG 0.616548 -186 TACCCGCGGCCGGGTGTGTCGCATAGCTTGCCT 17 165 0 CGGGTGTCGA 0.635348 -84 GCATCGCCTAGTCGCCCGTCGCCTTCGCTGTAC 19 44 0 GCGCCGTCGC 0.591031 -187 GTTGTATCTACTCGCCAGTCGCCTTCGCGCTGC 19 115 0 CCGCAGTCGC 0.531866 -116 CGCCCGTGTGGGCGCTGGTCGTATGCCCGGCCA 20 51 0 GCGTGGTCGA 0.428592 -250 AGCGCCCACACGGGCGCGTCCGGTCCCACCCTT 20 68 1 CGGGCGTCCG 0.756944 -233 CGCCCGCACACAGCCTTGTCGCGATCAATTTCA 20 122 0 CGCTTGTCGG 0.881432 -179 GCCCCGCGCTCGGGCGTGTCGCCCGCACACAGC 20 141 0 CGGGTGTCGC 0.918125 -160 GCCCGAGCGCGGGGCCGGTGGACCTACGACAGG 20 159 1 GGGCGGTGGC 0.526837 -142 CCAGAAGGACCGGGTCGATCGGCGCGCCGGGGA 20 231 1 CGGCGATCGC 0.536103 -70 TCGCTTCGCTCTGCATCGTCGCCGGG 21 4 0 CGCTCGTCGC 0.979417 -89 CTTTCTCTCACGCTCTCGTCGCCGGGCTAGGCC 21 58 0 CCTTCGTCGC 0.723684 -35 CGGTAGCGCCCACGATCGTCGAGATCTCCGCCT 23 22 0 CCGTCGTCGG 0.722167 -279 GTGAGCAGACCTCGGCCGGCGCGCATAAGCTTT 23 172 1 CCGCCGGCGG 0.61251 -129 CGCATAAGCTTTGCTTGGTCGGCCCCGCGTGCC 23 193 1 TGCTGGTCGC 0.5612 -108 GTCGGCCCCGCGTGCCCGTCGGCGACAAAGACC 23 210 1 CTGCCGTCGC 0.504932 -91 ATGGTCCTGGCTGGCTCCTCCTACCGTGCACAC 23 256 1 CGGTCCTCCA 0.325496 -45 GGTACCCCCACTGCATCGTCGTCAGCGCGGTCA 24 34 0 CGCTCGTCGC 0.979417 -130 TCATCGCTTGCGGCCCCCTCGCCGCTGCGCGTC 24 71 0 CGCCCCTCGC 0.829169 -93 TCGTCGTCAGCGCGGTCATCGAGCGCTACTCCT 24 106 0 CCGTCATCGG 0.511826 -58 CGCTTGCGCTCTGCATCGTCGTCAGCGCGGTCA 24 121 0 CGCTCGTCGC 0.979417 -43 CTTCGATAGCTCGCACCGTGGCGGCCCGGAACG 26 20 1 TGCCCGTGGG 0.268016 -141 CTGGTATGGACTGGCCCGTTCCGGGCCGCCACG 26 36 0 CGGCCGTTCG 0.593662 -125 CCCAATGCGACGCGGTGGTTGGGC 27 2 0 CCGTGGTTGG 0.649228 -205 GCTGGCGGCACGCCATCGCCGGGCTCGCTACCC 27 38 0 CCCTCGCCGG 0.5724 -169 CCCCATCAACCGGCGCGCTGGCGGCACGCCATC 27 54 0 CGCCGCTGGG 0.479005 -153 CACCCGTGATCCGGATGGTTCCGCTCGGGCCGA 27 88 1 CGGTGGTTCG 0.495959 -119 TTAAAATTCACCGCGGCGTCGATCTGAGTAGCA 27 152 1 CGCGCGTCGT 0.662135 -55 GCGGGCCTCCTCGGGTATCGCGGTG 27 192 0 GGCTCCTCGG 0.669174 -15 AGCCCCATCTCGGCGGGCTGCCGGTGCGCCAGT 28 37 0 CGCGGCTGCG 0.298081 -57 CGCCGAGATGGGGCTGCGTTGACAGCGATAGGG 28 55 1 GGCGCGTTGC 0.628411 -39 AACCCAGACCCTGGACCGTTGCCTGGAATCGCA 29 33 1 CGGCCGTTGC 0.854847 -129 AAGATCGTCTGCGCGTCGTGGCGGTGCGGAGTT 29 118 0 GGCTCGTGGG 0.772842 -44 CTAGGTGGCACTGTACCGTCGACGTCGCAATAA 30 38 0 CGTCCGTCGC 0.806972 -75 CCCGCGAAATCGGTTCCGTCGTAGGCGATATCG 31 32 0 CGTCCGTCGA 0.402446 -36 CTAATCCAGACAGGAGCGTCAGCT 32 18 1 CGGGCGTCAC 0.69672 -14 GGCGGCGCCCCCCGAGGGTTGGGT 33 2 0 CCGGGGTTGG 0.68664 -150 TTGGGGGGTACTCGGGGGGCGGCGCCCCCCGAG 33 19 0 CCGGGGGCGC 0.844558 -133 GGCGGCGCCCCCCGAGGGTTGGGTTGGGGGGTA 33 42 0 CCGGGGTTGG 0.68664 -110 GGTGGGGGTACTCGGGGGGCGGCGCCCCCCGAG 33 59 0 CCGGGGGCGC 0.844558 -93 GGGCGGCGCCCCCGAGGGTGGGGGTACTCGGGG 33 75 0 CCGGGGTGGG 0.504076 -77 TGGGGGCACTCGGGGGCGGCGCCCCCGAGGGTG 33 88 0 CGGGCGGCGC 0.957275 -64 ACTACGCGGCCCGCATCGTCGCCGAA 34 4 0 CGCTCGTCGC 0.979417 -212 ACGATGCGGGCCGCGTAGTGGTCCGAGGAGGAG 34 18 1 CGCTAGTGGC 0.432447 -198 GTCGGGCCGTCCGGCTCCTCCTCGGACCACTAC 34 32 0 CGGTCCTCCC 0.747226 -184 TGTGGGGCCCGGCCTCCGTCCGGGCGTGAATGA 34 123 0 GCCCCGTCCG 0.603501 -93 CCCACATTACCCGCATCGCCGTGCTCTGCGCAA 36 71 0 CGCTCGCCGG 0.750351 -183 TGGGTTGGCGGTGCGGTGTCCCGTGCCGGTTTG 36 100 1 GGCGTGTCCG 0.35173 -154 GTGTCCCGTGCCGGTTTGGCGTGCCCAGTTTTG 36 115 1 CGGTTGGCGG 0.687734 -139 * ** ****** * Masking position 9 Map Score: 109.767 Number of sites scoring better than the average of aligned sites = 65785 Number in coding regions = 62137 Number in noncoding regions = 3648 Number of orfs with sites within 600 bp upstream = 1352 Fraction of orfs with sites within 600 bp upstream = 0.217154 Motif number 6 GTCCGCGTGCGGAGCCGATCGGTC 1 4 0 GGAGCGATCG 0.716581 -297 TGACCGCCTCGATGGAGTCCGCGTGCGGAGC 1 20 0 GATGGGTCCG 0.443965 -281 CTCGGTTGGGGCAGCCGGCCGGCAGGCTGTC 1 210 0 GCAGCGGCCG 0.838747 -91 TAGGCTCGGCGAAGAAGAACACGACCAGCCG 4 54 1 GAAGAGAACA 0.12876 -50 CGCCCCTGCTGAAGGCGAACGTTCGACGACG 8 163 1 GAAGGGAACG 0.525728 -138 GTTCGACGACGATGCAGGCACGGCCTGAAGA 8 183 1 GATGCGGCAC 0.35364 -118 GGCCTGAAGAGGAGACGGACCATAGGTATGT 8 204 1 GGAGAGGACC 0.75096 -97 TCAGCGGGCCGAAGCTGGCCCTCCCACGGGT 11 17 0 GAAGCGGCCC 0.966133 -50 AGCCCTTAGAGGAGCGGTGCCCACGGGCCCG 14 245 0 GGAGCGTGCC 0.863355 -56 CCGCCCAGTCGAAGGGGGGCC 16 1 0 GAAGGGGGCC 0.917364 -300 TCAGACGCGGGGTGCCTGCCCGGCAAATGCA 16 106 0 GGTGCTGCCC 0.462852 -195 CCCGAAGACCGGTGCGGACCCAAAGCCGATC 16 190 1 GGTGCGACCC 0.895904 -111 CGTTGCGGCCGAAGCAGGGCG 17 1 0 GAAGCGGGCG 0.986609 -248 TAGGGGCGTGGATGCCGGGCCAATTCGCATG 17 100 1 GATGCGGGCC 0.972105 -149 TCACGAGTGAGGAGCCGAGCAATGGGTACAG 19 19 1 GGAGCGAGCA 0.837999 -212 GTACAGCGAAGGCGACGGGCGACTAGGCGAT 19 44 1 GGCGAGGGCG 0.890161 -187 TAGGCGATGCGAAGACGACCGCTAGTGAGCG 19 67 1 GAAGAGACCG 0.685179 -164 ACGCAAACCTGGCGCAGGGCAACCTGAACAG 20 19 0 GGCGCGGGCA 0.888174 -282 CGCCCGTGTGGGCGCTGGTCGTATGCCCGGC 20 53 0 GGCGCGGTCG 0.795197 -248 TCCCACCCTTGAAGCGCGACGATTTCGGCCT 20 91 1 GAAGCCGACG 0.401734 -210 CCCGGCGACGATGCAGAGCGAAGCGATGAG 21 10 1 GATGCGAGCG 0.935766 -83 GCGATGAGGAGGAGCAGGGCAATGCGGCCTA 21 33 1 GGAGCGGGCA 0.952641 -60 CGCTGACGACGATGCAGAGCGCAAGCGATGA 24 127 1 GATGCGAGCG 0.935766 -37 CTGGCCTGCGGGTGTTGGGCGCGTGATGCAA 26 111 1 GGTGTGGGCG 0.852427 -50 CGAGCCCGGCGATGGCGTGCCGCCAGCGCGC 27 44 1 GATGGGTGCC 0.438328 -163 ATATCGAGCCGAAGACGGACAACGCCG 31 7 0 GAAGAGGACA 0.364967 -61 TTCGGCGACGATGCGGGCCGCGTAGTGGTC 34 10 1 GATGCGGCCG 0.97272 -206 GGTCCGAGGAGGAGCCGGACGGCCCGACAAC 34 37 1 GGAGCGGACG 0.964102 -179 GCCGCTCATTGGTGCTGGGGGTCTGCATTTA 34 68 0 GGTGCGGGGG 0.761676 -148 CATCTCCATCGATGCCAGCCGCTCATTGGTG 34 85 0 GATGCAGCCG 0.478596 -131 TGGCATCGATGGAGATGGGCCAGCTCATTCA 34 99 1 GGAGAGGGCC 0.926595 -117 TTCACGCCCGGACGGAGGCCGGGCCCCACAC 34 126 1 GACGGGGCCG 0.817707 -90 AAGATCTTTGGGTGTGGGGCCCGGCCTCCGT 34 137 0 GGTGTGGGCC 0.780379 -79 ATAGCACCGGTGAGCCGAGCGGTTAGAGCAA 36 13 0 TGAGCGAGCG 0.411563 -241 ***** ***** Masking position 4 Map Score: 35.4922 Number of sites scoring better than the average of aligned sites = 12758 Number in coding regions = 11892 Number in noncoding regions = 866 Number of orfs with sites within 600 bp upstream = 594 Fraction of orfs with sites within 600 bp upstream = 0.0954064 Motif number 7 CGACGGCGCGCCGCCGATGCCCCCGCCGCGC 1 61 1 CCGCCGAGCC 0.64689 -240 CCCACCGGGGCCGCCCGGGCCCCCCGGTTCG 1 175 1 CCGCCCGGCC 0.940882 -126 CGGTGAGGTACAGCGAACGCCGTATCCATTT 1 275 0 CAGCGAAGCC 0.926706 -26 AAATGCCGACCAGGCACCACCGCACTCCAGG 3 90 0 CAGGCACACC 0.80417 -129 CGACAGCGAACAGCCAGTGCCTGGCAGGCCG 4 12 0 CAGCCAGGCC 0.976126 -92 TACGTAACCGCACCGACAGCGAACAGCCAGT 4 25 0 CACCGACGCG 0.676004 -79 TCGCGGTTGGCAGGCAAGACCAGACCAGGCC 8 67 0 CAGGCAAACC 0.752506 -234 GACGACGATGCAGGCACGGCCTGAAGAGGAG 8 187 1 CAGGCACGCC 0.887891 -114 TTACTAGCTACCCCGCGAGCCGTTCCGCTCT 8 265 0 CCCCGCGGCC 0.923079 -36 CCCAGCAGGGCAGGCCACACAGGCTG 10 6 1 CAGGGCAGCC 0.595033 -46 CCGGTCCGGTCAGCCAAAACGGCGACACGTA 12 44 0 CAGCCAAACG 0.515109 -257 GTTGCCGATCCACCGAAGACCGTCGGTCACC 12 89 1 CACCGAAACC 0.838728 -212 GGTTGAAGGTCCGGGAGCATCCCGGCGACCC 12 128 1 CCGGGAGATC 0.188985 -173 GCAGGAGGACGAGGCAGCACCGCCGGCGCGC 12 161 1 GAGGCAGACC 0.631614 -140 GACGTGCCGTCTGCGACCACCCGGGAACGAC 12 238 0 CTGCGACACC 0.342061 -63 GCACGTCGTACCCCGACTGCCACCAGACTTG 12 262 1 CCCCGACGCC 0.952386 -39 TCACCCAGTACCCCACACCAGG 13 2 1 CACCCAGACC 0.943877 -35 TACCCCACACCAGGAAGGACCGCCCATC 13 19 1 CAGGAAGACC 0.601024 -18 TCGAGATCGCCAGCTAGCGCCGATATCCGGG 14 12 1 CAGCTAGGCC 0.741413 -289 TTCATGCGACCAACGAGAGCCCTTAGAGGAG 14 262 0 CAACGAGGCC 0.765213 -39 CCCTAACGTCCCCCGAAGACCGGTGCGGACC 16 179 1 CCCCGAAACC 0.88478 -122 GACCGGTGCGGACCCAAAGCCGATCACCCCA 16 196 1 GACCCAAGCC 0.659412 -105 GGCAGCTCAGCCGCAAGCACCGTCAGCGGGC 16 247 1 CCGCAAGACC 0.834595 -54 CCCTGCTTCGGCCGCAACGCCCGCTTTGACC 17 13 1 GCCGCAAGCC 0.557558 -236 GCCGGTTAGCCAGCCAGGGCGCAAACCGACA 18 16 1 CAGCCAGGCG 0.862963 -65 GCAATGGGTACAGCGAAGGCGACGGGCGACT 19 37 1 CAGCGAAGCG 0.660714 -194 GCCGGGCATACGACCAGCGCCCACACGGGCG 20 53 1 CGACCAGGCC 0.44443 -248 CTAGATCGGTCCAGAAGGACCGGGTCGATCG 20 221 1 CCAGAAGACC 0.157214 -80 ATCGGCGCGCCGGGGAGCACCGGACCCGGAT 20 248 1 CGGGGAGACC 0.674501 -53 TACCGGATTGGCGGTAGCGCCCACGATCGTC 23 35 0 GCGGTAGGCC 0.255057 -266 GCTTGGTCGGCCCCGCGTGCCCGTCGGCGAC 23 205 1 CCCCGCGGCC 0.923079 -96 TAGGAGGAGCCAGCCAGGACCATCCCTGACG 23 248 0 CAGCCAGACC 0.954955 -53 TTGCATCACGCGCCCAACACCCGCAGGCCAG 26 111 0 CGCCCAAACC 0.560729 -50 GCCCAACCACCGCGTCGCATT 27 1 1 GCCCAACACC 0.243969 -206 CGATGGCGTGCCGCCAGCGCGCCGGTTGATG 27 53 1 CCGCCAGGCG 0.902897 -154 CAGCCCGAGCCGTCAGCCTAG 28 1 1 CAGCCCGGCC 0.915102 -93 CGCACTGGCGCACCGGCAGCCCGCCGAGATG 28 34 1 CACCGGCGCC 0.558206 -60 AAACTCCGCACCGCCACGACGCGCAGACGAT 29 117 1 CCGCCACACG 0.679331 -45 GGGCGCCGCCCCCCGAGTACCCCCCAACCCA 33 25 1 CCCCGAGACC 0.959354 -127 GGGCGCCGCCCCCCGAGTACCCCCACCCTCG 33 65 1 CCCCGAGACC 0.959354 -87 GGGGCGCCGCCCCCGAGTGCCCCCACAGACG 33 96 1 CCCCGAGGCC 0.978504 -56 CCGAGGAGGAGCCGGACGGCCCGACAACTAA 34 40 1 GCCGGACGCC 0.617973 -176 TAAATGCAGACCCCCAGCACCAATGAGCGGC 34 68 1 CCCCCAGACC 0.961289 -148 CGCAGAGGAAGAGGAAACGCCACCT 34 201 1 GAGGAAAGCC 0.147791 -15 ACCCACATTACCCGCATCGCCGTGCTCTGCG 36 74 0 CCCGCATGCC 0.422286 -180 CGGGACACCGCACCGCCAACCCACATTACCC 36 92 0 CACCGCCACC 0.649332 -162 ******* *** Masking position 10 Map Score: 60.2003 Number of sites scoring better than the average of aligned sites = 23803 Number in coding regions = 22448 Number in noncoding regions = 1355 Number of orfs with sites within 600 bp upstream = 844 Fraction of orfs with sites within 600 bp upstream = 0.135561 Motif number 8 GGCGGCGCGCCGTCGAGCGCGGCCTTGACC 1 46 0 CGTCGAGCGC 0.752805 -255 CCCCGGTGGGCGACGTCTGCCACCAAGCTG 1 155 0 CGACGTCTGC 0.934908 -146 GTACAGCGAACGCCGTATCCATTTCCAGTT 1 269 0 CGCCGTATCC 0.479977 -32 CGCGGTTGGCCCCTACGAGG 2 1 1 CGCGGTTGGC 0.733866 -31 CGATAGGCCTCGCCGTTCGCGACACTGACA 3 19 1 CGCCGTTCGC 0.926277 -200 ATCCGCGGCGTGTCGTGTGCGCAATGTCAG 3 43 0 TGTCGTGTGC 0.256599 -176 CACGACACGCCGCGGATCGTCGCACCGGGT 3 56 1 CGCGGATCGT 0.312853 -163 GGCGAGTTGCCGACGCAGGCGACCCTCCTG 3 149 1 CGACGCAGGC 0.550385 -70 CACGACCAGCCGCCGAACCCAGGCGGACGC 4 73 1 CGCCGAACCC 0.540999 -31 CGCCGAATGTCCAACGGAGA 6 1 1 CGCCGAATGT 0.645458 -32 ATGACACGCGCGCCCTCCGTTCGGTGAT 8 9 0 CGCCCTCCGT 0.463343 -292 TACGCCCCTTCGCGGTTGGCAGGCAAGACC 8 77 0 CGCGGTTGGC 0.733866 -224 CGACACGTATCGCCGAGTGTGAATCCCGCG 12 23 0 CGCCGAGTGT 0.76092 -278 GGCCGGCGCGCGCCGGCGGTGCTGCCTCGT 12 169 0 CGCCGGCGGT 0.552303 -132 TAGTTCCACGCCCCGACCGCTTCCTGCGTC 12 199 1 CCCCGACCGC 0.767044 -102 CACCCGGGAACGACGAACGCCCCGACGCAG 12 222 0 CGACGAACGC 0.901088 -79 GGGTACGACGTGCCGTCTGCGACCACCCGG 12 245 0 TGCCGTCTGC 0.831529 -56 GCACGTCGTACCCCGACTGCCACCAGACTT 12 262 1 CCCCGACTGC 0.656919 -39 TGCACCGTCAGGAGGTATGC 12 291 1 GGAGGTATGC 0.0752182 -10 GCCGGGTATTTGAGGAATGCGCCGTCCTGC 14 53 1 TGAGGAATGC 0.205412 -248 AAGTGGCGGGTGAGGTGGGCAGGAAGTAGC 14 105 0 TGAGGTGGGC 0.405206 -196 TGACATCAGACGCGGGGTGCCTGCCCGGCA 16 112 0 CGCGGGGTGC 0.690323 -189 TTTCCCCGCGCGCGGGCGGCCGCCCGCTGA 16 269 0 CGCGGGCGGC 0.741848 -32 GGCGATGCGAAGACGACCGCTAGTGAGCGA 19 69 1 AGACGACCGC 0.295017 -162 CTGTTCAGGTTGCCCTGCGCCAGGTTTGCG 20 19 1 TGCCCTGCGC 0.428476 -282 GCCGGGCATACGACCAGCGCCCACACGGGC 20 53 1 CGACCAGCGC 0.618331 -248 TCTAGCGTTGCGCCGAATACTGCGCCGCTG 20 196 0 CGCCGAATAC 0.307053 -105 CCTAGCCCGGCGACGAGAGCGTGAGAGAAA 21 60 1 CGACGAGAGC 0.426564 -33 GCGGAGATCTCGACGATCGTGGGCGCTACC 23 24 1 CGACGATCGT 0.362553 -277 GCGCGCCGGCCGAGGTCTGCTCACGGCAAC 23 166 0 CGAGGTCTGC 0.828838 -135 CGGTCTTTGTCGCCGACGGGCACGCGGGGC 23 214 0 CGCCGACGGG 0.638228 -87 GGACCATCCCTGACGTGCGCGGTCTTTGTC 23 233 0 TGACGTGCGC 0.756339 -68 CTGACCTGGTTGACGTGTGCACGGTAGGAG 23 273 0 TGACGTGTGC 0.643507 -28 GAGTAGCGCTCGATGACCGCGCTGACGACG 24 108 1 CGATGACCGC 0.307331 -56 TGGCGCGCGACGCCGTACGTCCTGGCCTGC 26 90 1 CGCCGTACGT 0.808273 -71 CCTCGGGTATCGCGGTGTGGACTTTGCTAC 27 179 0 CGCGGTGTGG 0.383217 -28 TGCGCCAGTGCGCCCTAGGCTGACGGCTCG 28 16 0 CGCCCTAGGC 0.658559 -78 TTCATTATTGCGACGTCGACGGTACAGTGC 30 34 1 CGACGTCGAC 0.361587 -79 AAATCGGTTCCGTCGTAGGCGATATCGAGC 31 29 0 CGTCGTAGGC 0.604279 -39 GGGGCGCCGCCCCCGAGTGCCCCCACAGAC 33 96 1 CCCCGAGTGC 0.624434 -56 GTCCGCCATATGACGTCTGTGGGGGCACTC 33 110 0 TGACGTCTGT 0.231287 -42 TTCTTCCTTTCGACGTCCGCCATATGACGT 33 124 0 CGACGTCCGC 0.961087 -28 CGGACCACTACGCGGCCCGCATCGTCGCCG 34 13 0 CGCGGCCCGC 0.751904 -203 CTGCGCAAAACGCCGTAGGCCACGCGCTCA 36 49 0 CGCCGTAGGC 0.949902 -205 TTACCCGCATCGCCGTGCTCTGCGCAAAAC 36 68 0 CGCCGTGCTC 0.504284 -186 ********** Masking position 2 Map Score: 29.6688 Number of sites scoring better than the average of aligned sites = 38780 Number in coding regions = 36369 Number in noncoding regions = 2411 Number of orfs with sites within 600 bp upstream = 1132 Fraction of orfs with sites within 600 bp upstream = 0.181818 Motif number 9 AGTCCGCGTGCGGAGCCGATCGGTC 1 5 0 CGGAGCCGTC 0.758583 -296 TCCATCGAGGCGGTCAAGGCCGCGCTCGACG 1 35 1 CGGTCAAGCC 0.672296 -266 CGTCGCCCACCGGGGCCGCCCGGGCCCCCCG 1 170 1 CGGGGCCGCC 0.98951 -131 CTGGCCGACCCGGGGCAAGTCCACCCTCGGT 1 235 0 CGGGGCAATC 0.961581 -66 TTGCCCCGGGTCGGCCAGATCAACTGGAAAT 1 248 1 TCGGCCAGTC 0.287528 -53 AGCACCTCGTAGGGGCCAACCGCG 2 4 0 AGGGGCCACC 0.62397 -28 TGGGTTGGCCAGGGCCTGGTCTGGTCTTGCC 8 55 1 AGGGCCTGTC 0.635697 -246 CCCAGCAGGGCAGGCCACACAGGCTG 10 6 1 CAGGGCAGCC 0.870612 -46 CCACAATAGCCTGGCCCGGTCCGGTCAGCCA 12 59 0 CTGGCCCGTC 0.785936 -242 TACCTCCTGACGGTGCAAGTCTGGTGGCAGT 12 277 0 CGGTGCAATC 0.851737 -24 GCGGTGCCCACGGGCCCGTTCGCCGCGATAA 14 232 0 CGGGCCCGTC 0.991719 -69 CCCCGAAGACCGGTGCGGACCCAAAGCCGAT 16 189 1 CGGTGCGGCC 0.823111 -112 GCGGGGAAAGCGGTGAAGTCC 16 290 1 CGGTGAAGCC 0.598009 -11 GCGTGGATGCCGGGCCAATTCGCATGTCCGC 17 105 1 CGGGCCAATC 0.971844 -144 CGGTCGTAACCGGGCCAGCCTACTCGTATGG 19 147 0 CGGGCCAGCT 0.767174 -84 CGGGCGCGTCCGGTCCCACCCTTGAAGCGCG 20 78 1 CGGTCCCACC 0.903319 -223 CGCCCGAGCGCGGGGCCGGTGGACCTACGAC 20 158 1 CGGGGCCGTG 0.779751 -143 CTCTCGTCGCCGGGCTAGGCCGCATTGCCCT 21 48 0 CGGGCTAGCC 0.77961 -45 TCCGCCCCACCAGGGCAGATCAACCCATGTC 23 84 0 CAGGGCAGTC 0.861005 -217 GACGGGCACGCGGGGCCGACCAAGCAAAGCT 23 199 0 CGGGGCCGCC 0.98951 -102 CGGCCCGGAACGGGCCAGTCCATACCAGCTG 26 41 1 CGGGCCAGCC 0.991721 -120 TACGGCGTCGCGCGCCAAATCGTGTAAGAGA 26 76 0 CGCGCCAATC 0.576366 -85 CCAACACCCGCAGGCCAGGACGTACGGCGTC 26 98 0 CAGGCCAGAC 0.379341 -63 TGGTTCCGCTCGGGCCGATTCTGATGCGTGA 27 103 1 CGGGCCGATC 0.889572 -104 GCGGGCCTCCTCGGGTATCGCG 27 195 0 CGGGCCTCTC 0.646628 -12 AGTAGCTATTCGGGGAAACTCCGCACCGCCA 29 102 1 CGGGGAAATC 0.651257 -60 TCGATGGAGATGGGCCAGCTCATTCACGCCC 34 104 1 TGGGCCAGTC 0.898804 -112 CTTTGGGTGTGGGGCCCGGCCTCCGTCCGGG 34 132 0 GGGGCCCGCC 0.860052 -84 TGCGGAGGTATGGTCCCAGTCCGTTCCCTGC 34 174 0 TGGTCCCATC 0.409291 -42 GACTGTCTCGGTCCTGTTCTATGGGTATG 35 14 0 CGGTCCTGTC 0.876939 -19 CTCGGCTCACCGGTGCTATTCCGGTGAGCGC 36 25 1 CGGTGCTATC 0.617917 -229 ******** ** Masking position 3 Map Score: 42.0911 Number of sites scoring better than the average of aligned sites = 8285 Number in coding regions = 7646 Number in noncoding regions = 639 Number of orfs with sites within 600 bp upstream = 479 Fraction of orfs with sites within 600 bp upstream = 0.0769354 Motif number 10 GCGCGACCCGCTCGAGGAGGTCACGGCCGCG 1 88 1 CTGAGGAGGT 0.744128 -213 ACGGCCTGAAGAGGAGACGGACCATAGGTAT 8 202 1 GAGAGACGGA 0.767399 -99 GCGACCCACGCAGGAGGACGAGGCAGCACCG 12 152 1 CAGAGGACGA 0.848535 -149 GCACTAACAAGTCCAGGAGGACACAAAA 19 213 1 GTCAGGAGGA 0.898125 -18 AGAGCGAAGCGATGAGGAGGAGCAGGGCAAT 21 25 1 GAGAGGAGGA 0.993988 -68 GGCCGCAAGCGATGAGGAGGAGTAGCGCTCG 24 89 1 GAGAGGAGGA 0.993988 -75 GAGCGCAAGCGATGAGGAGGAGTAGCGCTCG 24 143 1 GAGAGGAGGA 0.993988 -21 ACCCCGGGCTGCGCAGGAGGATAGA 26 146 1 GCCAGGAGGA 0.931679 -15 CAGCGTTGAACACGAGGAGGTC 29 2 0 CAGAGGAGGT 0.921389 -160 AACTGTTATCGATAAGGAGGACG 30 3 0 GAAAGGAGGA 0.928706 -110 CGCGTAGTGGTCCGAGGAGGAGCCGGACGGC 34 29 1 TCGAGGAGGA 0.847178 -187 TACCTCCGCAGAGGAAGAGGAAACGCCACCT 34 195 1 GAGAAGAGGA 0.91589 -21 CACCGACAAGGAAGAGAAGGATCGCCAGAAA 36 230 1 GAGAGAAGGA 0.954375 -24 ** ******** Masking position 5 Map Score: 15.8612 Number of sites scoring better than the average of aligned sites = 227 Number in coding regions = 160 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 58 Fraction of orfs with sites within 600 bp upstream = 0.00931577 Motif number 11 ACCCTCGGTTGGGGCAGCCGGCCGGCAGGCTG 1 212 0 GGGGCAGCGC 0.949636 -89 AACGGCTCGCGGGGTAGCTAGTAAACGAAGGA 8 272 1 GGGGTAGCGT 0.852736 -29 GCTAGTAAACGAAGGAGCATGCG 8 288 1 GAAGGAGCGC 0.967204 -13 AGGTGGGCAGGAAGTAGCCAGCGCAACGTCCA 14 91 0 GAAGTAGCGC 0.966647 -210 ACCGGGTTGTGGAGTAGCTGACATCAGACGCG 16 128 0 GGAGTAGCAC 0.956918 -173 GAAGCGATGAGGAGGAGCAGGGCAATGCGGCC 21 30 1 GGAGGAGCGG 0.945425 -63 GGGAGTTTCAGGAGTAGCCAACC 22 28 1 GGAGTAGCAC 0.956918 -13 GTGCACGGTAGGAGGAGCCAGCCAGGACCATC 23 255 0 GGAGGAGCGC 0.993896 -46 GCGATGAGGAGGAGTAGCGCTCGATGACCGCG 24 97 1 GGAGTAGCTC 0.956917 -67 GCGATGAGGAGGAGTAGCGCTCG 24 151 1 GGAGTAGCTC 0.956917 -13 CAGGACGTACGGCGTCGCGCGCCAAATCGTGT 26 82 0 GGCGTCGCGC 0.814524 -79 GCATTGGGACAGGGTAGCGAGCCCGGCGATGG 27 27 1 AGGGTAGCGC 0.830867 -180 AGTGGTCCGAGGAGGAGCCGGACGGCCCGACA 34 34 1 GGAGGAGCGA 0.921187 -182 GTCCGGGCGTGAATGAGCTGGCCCATCTCCAT 34 107 0 GAATGAGCGC 0.642567 -109 ******** ** Masking position 8 Map Score: 17.4856 Number of sites scoring better than the average of aligned sites = 903 Number in coding regions = 842 Number in noncoding regions = 61 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 12 CGTCGGTCACCGAGCAATCGGTTGAAGGTCC 12 109 1 CGAGCAATCG 0.9317 -192 CAGGTCAAAGCGGGCGTTGCGGCCGAAGCAG 17 15 0 CGGGCGTTGG 0.944393 -234 AGACTGGCGGCGGGTATTGTGGTTGCTCGTG 17 48 1 CGGGTATTGG 0.947385 -201 AGTGAGGAGCCGAGCAATGGGTACAGCGAAG 19 24 1 CGAGCAATGG 0.963852 -207 GCGAAGCTCACGAGCAATGAGCAGCGCGAAG 19 95 1 CGAGCAATGG 0.963852 -136 AACCTGGCGCAGGGCAACCTGAACAGTATGC 20 14 0 AGGGCAACCG 0.699521 -287 GAGGAGGAGCAGGGCAATGCGGCCTAGCCCG 21 38 1 AGGGCAATGG 0.929228 -55 CCGCGCAATCAGATCTAGGGAG 22 2 1 CGCGCAATCG 0.936407 -39 TCCTGGCCTGCGGGTGTTGGGCGCGTGATGC 26 109 1 CGGGTGTTGG 0.861891 -52 CGGGCCTCCTCGGGTATCGCGGTGTGGACTT 27 185 0 CGGGTATCGG 0.847653 -22 CAGCCCAGCCCGCGAAATCGGTTCCGTCGTA 31 42 0 CGCGAAATCG 0.621818 -26 CACGGCGATGCGGGTAATGTGGGTTGGCGGT 36 81 1 CGGGTAATGG 0.971991 -173 ********* * Masking position 4 Map Score: 9.46602 Number of sites scoring better than the average of aligned sites = 1429 Number in coding regions = 1303 Number in noncoding regions = 126 Number of orfs with sites within 600 bp upstream = 115 Fraction of orfs with sites within 600 bp upstream = 0.0184709 Motif number 13 TGTGCGGCCACGGTCGATCCGTGGCAGGAGGGTCG 3 168 0 CGTCGTCTGC 0.884728 -51 GAGTGTCTATCTTTCCGTTTCTTGATTTGCA 5 21 0 CTTCTTCTTC 0.977684 -21 GTTTTCAGTCCTCTCTGTCACTCTCGAGCC 9 6 0 CTTCTTCTTC 0.977684 -26 GGCCGGCGAACGATCTGTCCGGATCTCACGCACGC 14 184 0 CGTCTTCGTC 0.966552 -117 CTACCGGCTTTCTATCTTGGGCGCTTTCACGT 17 227 0 CTTCTTCGGC 0.976794 -22 TGCTAGTTAGCTGTCTATCACTGTCGGTTTGCGCC 18 33 0 CTTCTTCTTC 0.977684 -48 GAAGTCTTCCCACTCTTTCGGTTGCTAGTTAGCTG 18 55 0 CATCTTCTGC 0.91375 -26 CTAATCAGGTCTTTCTCTCACGCTCTCGTCGCCGG 21 66 0 CTTCTTCGTC 0.977243 -27 ** *** ** * ** Masking position 8 Map Score: 4.02336 Number of sites scoring better than the average of aligned sites = 8 Number in coding regions = 2 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 14 TTTTGGCTGACCGGACCGGGCCAGGCTATT 12 56 1 CCGGACCGGG 0.611544 -245 TGGAACTAGGCCGGCGCGCGCCGGCGGTGC 12 177 0 CCGGCGCGCG 0.94224 -124 ATAACCATCCCCGGATATCGGCGCTAGCTG 14 22 0 CCGGATATCG 0.93318 -279 AACGATCTGTCCGGATCTCACGCACGCAAC 14 181 0 CCGGATCTCA 0.671572 -120 TCGGTTTCGGCCGGCGAACGATCTGTCCGG 14 197 0 CCGGCGAACG 0.878483 -104 AGCACCGGACCCGGATACGGGCTCGAGTGG 20 263 1 CCGGATACGG 0.571434 -38 CATGATCTACCCGGATACCGGATTGGCGGT 23 51 0 CCGGATACCG 0.941314 -250 GTTCTAGTCCCCGTGTCCCG 24 1 0 CCGTGTCCCG 0.477224 -163 CCGTGGCGGCCCGGAACGGGCCAGTCCATA 26 35 1 CCGGAACGGG 0.711593 -126 GGTAGCGAGCCCGGCGATGGCGTGCCGCCA 27 39 1 CCGGCGATGG 0.756092 -168 GCGGAACCATCCGGATCACGGGTGACCCCA 27 82 0 CCGGATCACG 0.962526 -125 ATTTCCACCACCGGCTCACGTTTGTAGTCC 36 173 1 CCGGCTCACG 0.958407 -81 TGTCGGTGCACCCGATTCCGGCGCAGCACG 36 208 0 CCCGATTCCG 0.409459 -46 ********** Masking position 2 Map Score: 4.49752 Number of sites scoring better than the average of aligned sites = 5474 Number in coding regions = 5047 Number in noncoding regions = 427 Number of orfs with sites within 600 bp upstream = 314 Fraction of orfs with sites within 600 bp upstream = 0.0504337 Motif number 15 CGGACGAACCGGGGGGCCCGGGCGGCCCCGGTGGGCG 1 173 0 GGGGGGCGCC 0.916683 -128 CGCCGCGGTGAGGTACAGCGAACGCCGTATCCA 1 278 0 GGGAGGCAAC 0.918091 -23 CTGCGAAAATGCCGACCAGGCACCACCGCACTCCAGG 3 90 0 GCGACACACC 0.804542 -129 GTTCTTCTTCGCCGAGCCTACGTAACCGCACCGACAG 4 37 0 GCGAGGTACC 0.813431 -67 AATGTCCAACGGAGAGTGCAAAATACC 6 16 1 GGGAGAAACC 0.925354 -17 GGCGAGCTGAGGCCACAACAGTTTGCG 7 1 1 GGGAGGCACA 0.917782 -28 CGAGAGTGACAGAGAGGACTGAAAACC 9 15 1 AGGAGAAACC 0.380721 -17 GCTTCGGCCCGCTGAGTAACCACGACCCATAGATTGG 11 33 1 GCGAGACACC 0.978593 -34 TGAAGGTCCGGGAGCATCCCGGCGACCCACGCAGGAG 12 131 1 GGGCAGCACC 0.895991 -170 CACGCAGGAGGACGAGGCAGCACCGCCGGCGCGCGCC 12 158 1 GAGAGACGCC 0.848864 -143 GAAGGCGACTGGCGAGTAGATACAACCATACGAGTAG 19 122 1 GGGAGACACC 0.99249 -109 ATTTCGCTAATGTGAGTCCGCCCCACCAGGGCAGATC 23 94 0 TGGAGCCACC 0.600716 -207 GAGTGTGGTGAGAGGAAGCAACC 25 7 1 GGGAGGCACC 0.995655 -17 TAGCGAGCCCGGCGATGGCGTGCCGCCAGCGCGCCGG 27 41 1 GGGATGCGCC 0.818462 -166 TCGACGCCGCGGTGAATTTTAACAACCGGTTACCCAG 27 137 0 GGGAAACACC 0.953374 -70 GCGGGCTGCCGGTGCGCCAGTGCGCCCTAGGCTGACG 28 21 0 GGGCGGCCCC 0.88367 -73 CTCCGCAGAGGAAGAGGAAACGCCACCT 34 198 1 GAGAGGCACC 0.965361 -18 GGAGCCCTTCGCGGAATTTCCACCACCGGCTCACGTT 36 158 1 GCGAAACACC 0.875487 -96 ** *** ** *** Masking position 4 Map Score: 16.4004 Number of sites scoring better than the average of aligned sites = 1712 Number in coding regions = 1570 Number in noncoding regions = 142 Number of orfs with sites within 600 bp upstream = 154 Fraction of orfs with sites within 600 bp upstream = 0.024735