AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i210_trans4_mtub_reg_300.orf -a/home/amcguire/alignace/lib/ORF_mtub.txt -z/skink1/amcguire/genomes/mtub.fna -g0.66 -x5 Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.66 maxlen = 30 weight = 0.8 exclude = 0 Input sequences: #1 gpsI 300 gpsI #2 rpsO 156 rpsO #3 ribF 210 ribF #4 Rv2795c 144 hypothetical protein Rv2795c #5 Rv2798c 130 hypothetical protein Rv2798c #6 infB 85 infB #7 Rv2840c 126 hypothetical protein Rv2840c #8 Rv2842c 194 hypothetical protein Rv2842c Motif number 1 CGTTCTGGGCCGGTTCGGCCCAGCAAATGG 1 22 1 CGGTTCGGCC 0.985962 -279 ACGGCACACGCGGTTCTGCGCGTACCGCAC 1 51 0 CGGTTCTGCG 0.979686 -250 TACAGGCCGGGGGTGCTCCCTTGGATATGC 1 97 0 GGGTGCTCCC 0.842439 -204 CTGTATCGGGCGGTCCTCGGTAGTGGCTGC 1 122 1 CGGTCCTCGG 0.583017 -179 AGTGGCTGCCGGGCTCTCCGGATCTGGGGC 1 143 1 GGGCTCTCCG 0.828709 -158 GGCCATCGATCGAAGCGGCCGACCTGCCCC 1 168 0 CGAAGCGGCC 0.684709 -133 GTCTGAATGCGGCTACGGCCATCGATCGAA 1 184 0 GGCTACGGCC 0.847078 -117 GAAGCTCTCGGGGTTCGGCGAACCCGCTGG 1 226 1 GGGTTCGGCG 0.992863 -75 GATTATTGAGCTGTTTCGCGTCGTCACGCG 1 260 0 CTGTTTCGCG 0.721017 -41 GACGTCCGTGCGGCCTCTCTGGATT 1 286 0 CCGTGCGGCC 0.864394 -15 CGGTTCTTGCGGTCGTGACCC 2 2 1 GGTTCTTGCG 0.580821 -155 TCTTGCGGTCGTGACCCCCGGCTGGCACCT 2 15 1 GTGACCCCCG 0.697907 -142 ACCCCCGGCTGGCACCTGCGGCGTTTGTGT 2 28 1 GGCACCTGCG 0.910003 -129 TGCGGCGTTTGTGTTTGGCGGTCAACCCGC 2 44 1 GTGTTTGGCG 0.848184 -113 CGACATCGGTGCGTGCTGCGGTTCGCGGTG 2 89 1 GCGTGCTGCG 0.861643 -68 TGCTGCGGTTCGCGGTGGCCGTGCCCTGAT 2 102 1 CGCGGTGGCC 0.521876 -55 CCAATTCTCTGGGACCGGCCACGGTGCCGC 3 82 1 GGGACCGGCC 0.965516 -129 GGACCGGCCACGGTGCCGCCGGCGTTCCCG 3 93 1 CGGTGCCGCC 0.837847 -118 CGGTGCCGCCGGCGTTCCCGGACGTGCTGC 3 103 1 GGCGTTCCCG 0.640117 -108 CCAGGTGTCCGGCGGCCGCGTGCATGGTGT 3 134 1 GGCGGCCGCG 0.503759 -77 ATGGTGTTCCCGGATCGGCCGCTGGCCAGA 3 157 1 CGGATCGGCC 0.939619 -54 TTCACCGGTGGGCTCTGGCCAGCGGCCGAT 3 170 0 GGCTCTGGCC 0.950544 -41 GGTGGTCGGCCAGGCGCCAGA 3 200 0 GTGGTCGGCC 0.943919 -11 GCTTTTGCGTCTGCTCGGCCAACCTAGCCC 4 16 0 CTGCTCGGCC 0.859035 -129 CCGAAATGGGGGCTTTTGCGTCTGCTCGGC 4 27 0 GGCTTTTGCG 0.888473 -118 CCGAAATGGGGGCTTTTGCGTCTGCTCACG 4 59 1 GGCTTTTGCG 0.888473 -86 TTCGACCAACCGCTACGGCGTGAGCAGACG 4 77 0 CGCTACGGCG 0.847078 -68 ACCACCCTAACGACCCGGCGAAGTGGGAAC 4 120 0 CGACCCGGCG 0.864541 -25 GTCGGCTCCGCGTCGTCACAGT 5 3 1 CGGCTCCGCG 0.898634 -128 CGCATCAAAGGTGGCCCGGGTTAGAACAAG 5 43 0 GTGGCCCGGG 0.676234 -88 GGCGACAGTCGTGGGCCGCGCCTCGGGTTT 6 48 0 GTGGGCCGCG 0.923699 -38 GCCGGGCAATCGGGCTTGCCCGGTGACGCT 7 37 1 CGGGCTTGCC 0.904179 -90 GCGAGCCTTCGGCCTCGGCGCATCGACGCC 7 87 1 GGCCTCGGCG 0.865462 -40 CGGTCCGCGGGGATTATCCG 7 117 0 CGGTCCGCGG 0.746573 -10 CGCCTGCCTTCGTAGCGGCGTCTTTCTGAT 8 25 0 CGTAGCGGCG 0.699004 -170 CGTTCAACGTCTCGCCTGCCTTCGTAGCGG 8 37 0 CTCGCCTGCC 0.838981 -158 TAGCTACGCCGGCTGCTGCGTGCCGGCGGG 8 109 1 GGCTGCTGCG 0.829407 -86 GCGGCTCCCAGTGTCCCGCCGGCACGCAGC 8 123 0 GTGTCCCGCC 0.953782 -72 GCGGGACACTGGGAGCCGCCCTGGCGGCGC 8 134 1 GGGAGCCGCC 0.526265 -61 CCGCCCTGGCGGCGCCTCCGCTAGATGACC 8 149 1 GGCGCCTCCG 0.819916 -46 CTCAAGATGAGGAGCTCGCC 8 185 1 GGAGCTCGCC 0.624839 -10 ********** Masking position 9 Map Score: 64.6537 Number of sites scoring better than the average of aligned sites = 80310 Number in coding regions = 75183 Number in noncoding regions = 5127 Number of orfs with sites within 600 bp upstream = 1587 Fraction of orfs with sites within 600 bp upstream = 0.254899 Motif number 2 CCGATACAGGCCGGGGGTGCTCCCTTGGAT 1 101 0 CCGGGGGTGC 0.972086 -200 CGGCCTGTATCGGGCGGTCCTCGGTAGTGG 1 118 1 CGGGCGGTCC 0.970498 -183 TCCGGAGAGCCCGGCAGCCACTACCGAGGA 1 135 0 CCGGCAGCCA 0.848267 -166 CTCTCCGGATCTGGGGCAGGTCGGCCGCTT 1 156 1 CTGGGGCAGG 0.919535 -145 CTGGGAAGCTCTCGGGGTTCGGCGAACCCG 1 222 1 CTCGGGGTTC 0.770005 -79 CGGTTCTTGCGGTCGTGACCCCCGG 2 6 1 CTTGCGGTCG 0.774499 -151 CAGGTGCCAGCCGGGGGTCACGACCGCAAG 2 16 0 CCGGGGGTCA 0.842689 -141 TGACCCCCGGCTGGCACCTGCGGCGTTTGT 2 26 1 CTGGCACCTG 0.868921 -131 GTTGGACAGTCTAGCAGCGGGTTGACCGCC 2 60 0 CTAGCAGCGG 0.680472 -97 CGCCAATTCTCTGGGACCGGCCACGGTGCC 3 80 1 CTGGGACCGG 0.912349 -131 CACGGTGCCGCCGGCGTTCCCGGACGTGCT 3 101 1 CCGGCGTTCC 0.916 -110 CGCCGGACACCTGGCGCAGCACGTCCGGGA 3 118 0 CTGGCGCAGC 0.956376 -93 CGCCAGGTGTCCGGCGGCCGCGTGCATGGT 3 132 1 CCGGCGGCCG 0.754621 -79 TGGGCTCTGGCCAGCGGCCGATCCGGGAAC 3 162 0 CCAGCGGCCG 0.829932 -49 CCAGATTCACCGGTGGGCTCTGGCCAGCGG 3 175 0 CGGTGGGCTC 0.587209 -36 ACCGGTGAATCTGGCGCCTGGCCGACCACC 3 191 1 CTGGCGCCTG 0.846093 -20 ACTGTGACGACGCGGAGCCGAC 5 3 0 CGCGGAGCCG 0.746586 -128 CTTGTTCTAACCCGGGCCACCTTTGATGCG 5 43 1 CCCGGGCCAC 0.632206 -88 AGGCGACAGTCGTGGGCCGCGCCTCGGGTT 6 49 0 CGTGGGCCGC 0.769597 -37 CGGCCCACGACTGTCGCCTCATGGACAGGA 6 60 1 CTGTCGCCTC 0.709526 -26 AGGCCGAAGGCTCGCGCTGGATCACGGCTA 7 72 0 CTCGCGCTGG 0.883672 -55 GGGGATTATCCGGGCGTCGATGCGCCGAGG 7 99 0 CGGGCGTCGA 0.75875 -28 CCGGATAATCCCCGCGGACCG 7 116 1 CCCGCGGACC 0.924109 -11 TTCGTGATTCCTGGCGTATCGTTGGTAGCT 8 84 1 CTGGCGTATC 0.728019 -111 CACGCAGCAGCCGGCGTAGCTACCAACGAT 8 101 0 CCGGCGTAGC 0.88781 -94 CGGCGGGACACTGGGAGCCGCCCTGGCGGC 8 132 1 CTGGGAGCCG 0.941958 -63 GGGAGCCGCCCTGGCGGCGCCTCCGCTAGA 8 144 1 CTGGCGGCGC 0.993925 -51 ********** Masking position 1 Map Score: 36.2575 Number of sites scoring better than the average of aligned sites = 46274 Number in coding regions = 43313 Number in noncoding regions = 2961 Number of orfs with sites within 600 bp upstream = 1271 Fraction of orfs with sites within 600 bp upstream = 0.204144 Motif number 3 ATCCAAGGGAGCACCCCCGGCCTGTATCGGG 1 101 1 GCACCCCCGC 0.768773 -200 GGTAGTGGCTGCCGGGCTCTCCGGATCTGGG 1 140 1 GCCGGGCTTC 0.963316 -161 CAGAGAGGCCGCACGGACGTC 1 290 1 GCACGGACTC 0.922384 -11 ACCGCAGCACGCACCGATGTCGTTGGACAGT 2 80 0 GCACCGATTC 0.927321 -77 CGGTGGCCGTGCCCTGATATCCATGATCGCG 2 114 1 GCCCTGATTC 0.95672 -43 CAGACCCACTCCCTGATCACCTGATCAATG 3 10 1 TCCCTGATAC 0.698701 -201 TGAATCTGGCGCCTGGCCGACCACC 3 196 1 GCCTGGCCAC 0.877299 -15 TTTTGCGTCTGCTCGGCCAACCTAGCCCAAC 4 13 0 GCTCGGCCAC 0.898215 -132 AGACGCAAAAGCCCCCATTTCGGGCCCGAAA 4 34 1 GCCCCCATTC 0.960964 -111 AGACGCAAAAGCCCCCATTTCGGGCCCGAAA 4 51 0 GCCCCCATTC 0.960964 -94 TCTGCGGTAGTTCCCGCTGACGCATAATGTG 5 79 1 TTCCCGCTAC 0.645187 -52 ACACCGTGAAGTCCCGATGACAATGCGTCAT 6 13 1 GTCCCGATAC 0.938189 -73 TAAACCCGAGGCGCGGCCCACGACTGTCGCC 6 47 1 GCGCGGCCAC 0.928233 -39 AAGCCCGATTGCCCGGCTATCTGCCGTGGGA 7 23 0 GCCCGGCTTC 0.992331 -104 GCGCATCGACGCCCGGATAATCCCCGCGGAC 7 104 1 GCCCGGATAT 0.83381 -23 CACGAATGACGCCGTGATCACGCCGTTCAAC 8 59 0 GCCGTGATAC 0.854847 -136 GGCTCCCAGTGTCCCGCCGGCACGCAGCAGC 8 120 0 GTCCCGCCGC 0.917095 -75 GACACTGGGAGCCGCCCTGGCGGCGCCTCCG 8 138 1 GCCGCCCTGC 0.824325 -57 TCCGCTAGATGACCGGACAACTCAAGATGAG 8 165 1 GACCGGACAC 0.851011 -30 ******** ** Masking position 11 Map Score: 24.6506 Number of sites scoring better than the average of aligned sites = 13962 Number in coding regions = 12944 Number in noncoding regions = 1018 Number of orfs with sites within 600 bp upstream = 703 Fraction of orfs with sites within 600 bp upstream = 0.112914 Motif number 4 ATTTGCTGGGCCGAACCGGCCCAGAACGTT 1 20 0 CCGAACCGGC 0.968994 -281 GCAAATGGTGCGGTACGCGCAGAACCGCGT 1 44 1 CGGTACGCGC 0.94918 -257 CTCGCTGGAACGGCACACGCGGTTCTGCGC 1 60 0 CGGCACACGC 0.953676 -241 CCGGAGAGCCCGGCAGCCACTACCGAGGAC 1 134 0 CGGCAGCCAC 0.971529 -167 CGGCCATCGATCGAAGCGGCCGACCTGCCC 1 169 0 TCGAAGCGGC 0.710324 -132 CGATCGATGGCCGTAGCCGCATTCAGACCT 1 186 1 CCGTAGCCGC 0.9383 -115 TCGGGGTTCGGCGAACCCGCTGGATTGCGC 1 233 1 GCGAACCCGC 0.723374 -68 TGTTTCGCGTCGTCACGCGCAATCCAGCGG 1 249 0 CGTCACGCGC 0.756222 -52 TCCAGAGAGGCCGCACGGACGTC 1 288 1 CCGCACGGAC 0.951664 -13 TCGTGACCCCCGGCTGGCACCTGCGGCGTT 2 23 1 CGGCTGGCAC 0.793196 -134 CCGCGAACCGCAGCACGCACCGATGTCGTT 2 87 0 CAGCACGCAC 0.883841 -70 CCCAGAGAATTGGCGCGCGCATACCGAACG 3 65 0 TGGCGCGCGC 0.896171 -146 GCCAATTCTCTGGGACCGGCCACGGTGCCG 3 81 1 TGGGACCGGC 0.521284 -130 GGACCGGCCACGGTGCCGCCGGCGTTCCCG 3 93 1 CGGTGCCGCC 0.79312 -118 GCCAGGTGTCCGGCGGCCGCGTGCATGGTG 3 133 1 CGGCGGCCGC 0.991971 -78 GGGCTCTGGCCAGCGGCCGATCCGGGAACA 3 161 0 CAGCGGCCGA 0.622425 -50 GGCCGCTGGCCAGAGCCCACCGGTGAATCT 3 173 1 CAGAGCCCAC 0.861553 -38 GCTAGGTTGGCCGAGCAGACGCAAAAGCCC 4 18 1 CCGAGCAGAC 0.697179 -127 TGTGACGACGCGGAGCCGAC 5 1 0 CGGAGCCGAC 0.950652 -130 GCGGTAGTTCCCGCTGACGCATAATGTGAT 5 82 1 CCGCTGACGC 0.653268 -49 AGCCGTGATCCAGCGCGAGCCTTCGGCCTC 7 73 1 CAGCGCGAGC 0.594838 -54 CGTCGATGCGCCGAGGCCGAAGGCTCGCGC 7 85 0 CCGAGGCCGA 0.710597 -42 CCCGGATAATCCCCGCGGACCG 7 115 1 CCCCGCGGAC 0.570463 -12 TCGCCTGCCTTCGTAGCGGCGTCTTTCTGA 8 26 0 TCGTAGCGGC 0.559821 -169 AGTGTCCCGCCGGCACGCAGCAGCCGGCGT 8 114 0 CGGCACGCAG 0.642975 -81 GGTCATCTAGCGGAGGCGCCGCCAGGGCGG 8 149 0 CGGAGGCGCC 0.823119 -46 ********** Masking position 3 Map Score: 28.1475 Number of sites scoring better than the average of aligned sites = 71513 Number in coding regions = 67390 Number in noncoding regions = 4123 Number of orfs with sites within 600 bp upstream = 1466 Fraction of orfs with sites within 600 bp upstream = 0.235464 Motif number 5 TATGCATAGTGACTCGCTGGAACGGCACAC 1 72 0 GACTCGCTGG 0.61968 -229 TCCAAGGGAGCACCCCCGGCCTGTATCGGG 1 102 1 CACCCCCGGC 0.923384 -199 CGAAGCGGCCGACCTGCCCCAGATCCGGAG 1 158 0 GACCTGCCCC 0.898673 -143 GGGTTCGGCGAACCCGCTGGATTGCGCGTG 1 236 1 AACCCGCTGG 0.92765 -65 TTGCGGTCGTGACCCCCGGCTGGCACCTGC 2 17 1 GACCCCCGGC 0.98524 -140 CCCCGGCTGGCACCTGCGGCGTTTGTGTTT 2 30 1 CACCTGCGGC 0.931051 -127 TTTGGCGGTCAACCCGCTGCTAGACTGTCC 2 57 1 AACCCGCTGC 0.981343 -100 CGGCCACCGCGAACCGCAGCACGCACCGAT 2 93 0 GAACCGCAGC 0.733204 -64 CAGACCCACTCCCTGATCACCT 3 3 1 GACCCACTCC 0.880237 -208 GGCGTTCCCGGACGTGCTGCGCCAGGTGTC 3 113 1 GACGTGCTGC 0.831489 -98 TGCGCCAGGTGTCCGGCGGCCGCGTGCATG 3 130 1 GTCCGGCGGC 0.872933 -81 GGTGGGCTCTGGCCAGCGGCCGATCCGGGA 3 164 0 GGCCAGCGGC 0.89811 -47 CGCTGGCCAGAGCCCACCGGTGAATCTGGC 3 176 1 AGCCCACCGG 0.610361 -35 CAGCCAGTTCGACCAACCGCTACGGCGTGA 4 84 0 GACCAACCGC 0.888436 -61 AACTTGTTCTAACCCGGGCCACCTTTGATG 5 41 1 AACCCGGGCC 0.617252 -90 GCGTCAGCGGGAACTACCGCAGAATTCACC 5 72 0 GAACTACCGC 0.536283 -59 GTCATAGCTAAACCCGAGGCGCGGCCCACG 6 39 1 AACCCGAGGC 0.861393 -47 GCCGTGGGATAACGCACGGCG 7 2 0 AACGCACGGC 0.889867 -125 GCCGTGCGTTATCCCACGGCAGATAGCCGG 7 12 1 ATCCCACGGC 0.898359 -115 GGCTCCCAGTGTCCCGCCGGCACGCAGCAG 8 121 0 GTCCCGCCGG 0.930859 -74 TCATCTAGCGGAGGCGCCGCCAGGGCGGCT 8 147 0 GAGGCGCCGC 0.767194 -48 ********** Masking position 7 Map Score: 24.9971 Number of sites scoring better than the average of aligned sites = 18562 Number in coding regions = 17305 Number in noncoding regions = 1257 Number of orfs with sites within 600 bp upstream = 766 Fraction of orfs with sites within 600 bp upstream = 0.123032 Motif number 6 CTCTCGGGGTTCGGCGAACCCGCTGGATTG 1 230 1 TCGGCGAACC 0.895481 -71 GGTTCTTGCGGTCGTGACCCCCGGCTGGCA 2 12 1 GTCGTGACCC 0.876196 -145 GGGCACGGCCACCGCGAACCGCAGCACGCA 2 98 0 ACCGCGAACC 0.932141 -59 CATCAATGGGTTCGCGATCATGGATATCAG 2 127 0 TTCGCGATCA 0.921302 -30 CAGACCCACTCCCTGATCACCTGATCAAT 3 10 1 TCCCTGATCA 0.845708 -201 GCGCAGCACGTCCGGGAACGCCGGCGGCAC 3 105 0 TCCGGGAACG 0.912397 -106 CAGCGGCCGATCCGGGAACACCATGCACGC 3 151 0 TCCGGGAACA 0.958541 -60 GCTACACTTAGCCGTGATCCAGCGCGAGCC 7 64 1 GCCGTGATCC 0.985632 -63 CACGAATGACGCCGTGATCACGCCGTTCAA 8 60 0 GCCGTGATCA 0.972157 -135 CACGGCGTCATTCGTGATTCCTGGCGTATC 8 74 1 TTCGTGATTC 0.672146 -121 ********** Masking position 7 Map Score: 5.78397 Number of sites scoring better than the average of aligned sites = 3434 Number in coding regions = 3203 Number in noncoding regions = 231 Number of orfs with sites within 600 bp upstream = 223 Fraction of orfs with sites within 600 bp upstream = 0.0358175 Motif number 7 ACTACCGAGGACCGCCCGATACAGGCCGGG 1 116 0 ACCGCCCGAT 0.931686 -185 GAACCGCAGCACGCACCGATGTCGTTGGAC 2 83 0 ACGCACCGAT 0.976334 -74 CAGACCCACTCCCTGATCACCTGATCA 3 8 1 ACTCCCTGAT 0.928942 -203 GCAGACGCAAAAGCCCCCATTTCGGGCCCG 4 32 1 AAGCCCCCAT 0.98077 -113 GCAGACGCAAAAGCCCCCATTTCGGGCCCG 4 54 0 AAGCCCCCAT 0.98077 -91 GCACACCGTGAAGTCCCGATGACAATGCGT 6 11 1 AAGTCCCGAT 0.949321 -75 CGGCGCATCGACGCCCGGATAATCCCCGCG 7 102 1 ACGCCCGGAT 0.988299 -25 ATCACGAATGACGCCGTGATCACGCCGTTC 8 62 0 ACGCCGTGAT 0.943404 -133 ********** Masking position 9 Map Score: 8.09044 Number of sites scoring better than the average of aligned sites = 641 Number in coding regions = 584 Number in noncoding regions = 57 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 8 CCGATACAGGCCGGGGGTGCTCCCTTGGAT 1 101 0 CCGGGGGTGC 0.790036 -200 CTACGGCCATCGATCGAAGCGGCCGACCTG 1 172 0 CGATCGAAGC 0.730533 -129 GACCTTTTCTCCTGGGAAGCTCTCGGGGTT 1 211 1 CCTGGGAAGC 0.935229 -90 GATCGCGAACCCATTGATGGAGACATTTC 2 138 1 CCATTGATGG 0.562777 -19 GCCGGCGGCACCGTGGCCGGTCCCAGAGAA 3 86 0 CCGTGGCCGG 0.609557 -125 CGCAGCACGTCCGGGAACGCCGGCGGCACC 3 104 0 CCGGGAACGC 0.84388 -107 TCCGGGAACACCATGCACGCGGCCGCCGGA 3 141 0 CCATGCACGC 0.844475 -70 ACCCGGGCCACCTTTGATGCGGTGAATTCT 5 52 1 CCTTTGATGC 0.880826 -79 GCGGTAGTTCCCGCTGACGCATAATGTGAT 5 82 1 CCGCTGACGC 0.927704 -49 TGATGCACTTCGATGGACGCAAGGAAGCAA 5 108 1 CGATGGACGC 0.968415 -23 CTCGGGTTTAGCTATGACGCATTGTCATCG 6 27 0 GCTATGACGC 0.629698 -59 AGGCGACAGTCGTGGGCCGCGCCTCGGGTT 6 49 0 CGTGGGCCGC 0.884893 -37 TCGGGCTTGCCCGGTGACGCTACACTTAGC 7 46 1 CCGGTGACGC 0.96531 -81 CGGCCTCGGCGCATCGACGCCCGGATAATC 7 96 1 GCATCGACGC 0.549745 -31 GTCTCGCCTGCCTTCGTAGCGGCGTCTTTC 8 29 0 CCTTCGTAGC 0.399642 -166 CCAGGAATCACGAATGACGCCGTGATCACG 8 68 0 CGAATGACGC 0.822082 -127 ********** Masking position 9 Map Score: 9.46358 Number of sites scoring better than the average of aligned sites = 18304 Number in coding regions = 17379 Number in noncoding regions = 925 Number of orfs with sites within 600 bp upstream = 659 Fraction of orfs with sites within 600 bp upstream = 0.105846 Motif number 9 ********** No masking Map Score: -8.2833e-14 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 10 ********** No masking Map Score: -8.2833e-14 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: -8.2833e-14 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0