AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i054_Arginine_Biosynthesis_mthe_reg_300.orf -o054_mthe_300.ace -a/home/amcguire/genomes/ORF_mthe.txt -z/home/amcguire/genomes/mthe.fna -g0.50 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.5 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: RTH00115 20 M.thermo Input sequences: #1 RTH01478 169 M.thermo #2 RTH02111 128 M.thermo #3 RTH00507 168 M.thermo #4 RTH01222 117 M.thermo #5 RTH00669 49 M.thermo #6 RTH02113 36 M.thermo #7 RTH01449 18 M.thermo #8 RTH02062 231 M.thermo #9 RTH02064 195 M.thermo #10 RTH01737 64 M.thermo #11 RTH00128 23 M.thermo #12 RTH00136 54 M.thermo #13 RTH02067 22 M.thermo #14 RTH01815 75 M.thermo #15 RTH00552 206 M.thermo #16 RTH01769 269 M.thermo #17 RTH00704 49 M.thermo #18 RTH02072 18 M.thermo #19 RTH01577 19 M.thermo #20 RTH00727 24 M.thermo #21 RTH01200 24 M.thermo #22 RTH01872 170 M.thermo #23 RTH00804 135 M.thermo #24 RTH00893 81 M.thermo #25 RTH00026 64 M.thermo Motif number 1 CCGACTCTGATTCAGGGGTAATGGCAAAATT 2 80 1 TTCAGGGGAA 0.97934 -49 TGATGAGGATTCCATGAGAATAGTTCTCAAT 4 78 1 TCCATGAGAT 0.799259 -40 TGTAACCGGAATCATGGGCCATCCCCTGGGC 8 28 0 ATCATGGGCA 0.832475 -204 TATTGTAAGTACCATGAGAAAAAAAATCAGA 8 146 0 ACCATGAGAA 0.799259 -86 TTTATTTACCATCAGCGATAAATATTGTTGC 8 177 1 ATCAGCGAAA 0.496968 -55 TTACCTATAATCCAGGGGAGAGTGTGAC 8 214 1 TCCAGGGGGA 0.953337 -18 GAGTGTTGAGTTCCTGAGGAATATTATACCT 9 23 1 TTCCTGAGAA 0.560666 -173 GCCTTCCGTGTTCCTGGGGAATATTCCGCTG 9 86 1 TTCCTGGGAA 0.942024 -110 CCAGCACCCCTCCAGCGGAATATTCCCCAGG 9 98 0 TCCAGCGGAT 0.818966 -98 CAGATAGAGTTCCCTGGAAAACCAGCACCCC 9 119 0 TCCCTGGAAA 0.926044 -77 ACCCTGACCCTCCAGGGGAAATCCTTCAGGG 9 161 0 TCCAGGGGAA 0.98462 -35 AAAGGGGTCTTCCATGGATGACTGCAGCGA 10 10 0 TCCATGGAGA 0.865828 -55 ACCTGAATTAACCAGGGAAATTAAACGGGGT 14 11 0 ACCAGGGAAT 0.639892 -65 TTTTCTATTTTTCATCGGACAACTTGAAGTT 15 50 1 TTCATCGGCA 0.788648 -157 CATCGGTTGGTTCATGGGGCACCTTCAACCC 15 118 0 TTCATGGGCA 0.941849 -89 AATCCTTGTTTTCCTGGGCGTCTTACTGGAT 16 89 1 TTCCTGGGGT 0.754647 -181 TTACTGGATGATCCGGGATAATTCAGAATAC 16 111 1 ATCCGGGAAA 0.726463 -159 GATACAGATTTTCATGAGAAATCGTATTCTG 16 134 0 TTCATGAGAA 0.905624 -136 TTTTCTACCATCCATCGGTAATTACACCAAT 16 244 0 TCCATCGGAA 0.940446 -26 CCTTTAACTGTCCATGGGGATATCTTCCCC 22 10 0 TCCATGGGAT 0.954576 -161 TTATAAGTATTTCATGGACAACCTTTAACTG 22 31 0 TTCATGGAAA 0.937393 -140 GCTGGCCCACTTCCGGAAAAATCCGTATACC 23 18 1 TTCCGGAAAA 0.621072 -118 ******** ** Masking position 3 Map Score: 26.4733 Number of sites scoring better than the average of aligned sites = 1203 Number in coding regions = 1119 Number in noncoding regions = 84 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 2 GGGAAAACCCCCACCTACATCACCCCCCGATTTACATC 1 142 0 CCCACCACCC 0.966484 -28 GATTTTCAGACCCTCCAAGACCCACAGGAATACCCTCAA 2 22 0 CCCTCCACCA 0.980023 -107 TAAAAATCCTCCCACATAATCCATGCCTCAGAAACACTG 3 32 0 CCCACAACGC 0.953856 -137 ACGGTCTCATCCCTCAAACTGAGGGGTAAAGATATTAAC 4 19 1 CCCTCAAAGA 0.885885 -99 GCCCGGGAGGCCTTCCGTGTTCCTGGGGAATATTCCGCT 9 77 1 CCTTCCTCGA 0.802247 -119 CCCCCTGAATTCTTGAAGATACCTTTCTC 15 1 1 CCCCCTACGA 0.899835 -206 TAATTTCTCACCCTCCAAGCACTCGTGGATATACTGCTG 15 80 1 CCCTCCACGA 0.995622 -127 TATAAAGGTACTCACCCACTTCATGTTAATCCATAACTT 16 190 1 CTCACCACGA 0.965252 -80 GGTGGGGCCTCCCACCCATATAATGTCCATCACTGACCC 22 80 0 CCCACCAAGA 0.988435 -91 GGTGGGAGGCCCCACCATACCCTCGCAGACTATCCAGAG 22 103 1 CCCACCTCGA 0.989697 -68 CTATACCCACCTATATAATGTCCATCACTGACCT 22 147 0 CCCACCAAGA 0.988435 -24 AAGTGTATGTCCCACCTGCCGCAGGTATACGGATTTTTC 23 33 0 CCCACCGCGA 0.987721 -103 ****** * * * * Masking position 5 Map Score: 14.7725 Number of sites scoring better than the average of aligned sites = 162 Number in coding regions = 154 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 3 ATGAAATTCTGGATGGAAACTGATTGAACAGAAT 1 19 0 GAGAACTGAT 0.990552 -151 TGATGAGCAGGCACCGACTCTGATTCAGGGGTAA 2 67 1 GAGATCTGAT 0.973872 -62 GTGTATATCCACGATGATACTGATTAATATGTAA 3 80 0 AGGAACTGAT 0.848266 -89 GTATCATCGTGGATATACACTGATCTGAGCATGT 3 94 1 GATAACTGAT 0.987361 -75 GCAGAATGATACTGATTAACAGGTAC 3 153 0 AAGAACTGAT 0.935756 -16 GTAATGCCGGGGTGATAAACTGATAACTGGAAAA 8 64 0 GTTAACTGAT 0.916614 -168 GCACCGGTCAGTATAGAATCTGATTTTTTTTCTC 8 128 1 GAGATCTGAT 0.973872 -104 CCAAGCACTCGTGGATATACTGCTGGGTTGAAGG 15 94 1 GGTAACTGCT 0.837323 -113 CCCACCTGCCGCAGGTATACGGATTTTTCCGGAA 23 28 0 GATAACGGAT 0.930608 -108 GCGGCAGGTGGGACATACACTTATAACTTATCCC 23 50 1 GATAACTTAT 0.848608 -86 CTTATAAATGGAATCATTCTGATACGCTCATGT 23 113 0 GACATCTGAT 0.895247 -23 TATTAATGTTGAACCTAAACTGATAATAAATATT 24 28 0 GATAACTGAT 0.987361 -54 * * ** ****** Masking position 7 Map Score: 13.1125 Number of sites scoring better than the average of aligned sites = 71 Number in coding regions = 57 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 4 CATACATCAGATATAAATTGATGGAATTGATGA 1 49 0 ATAAATTGTG 0.983077 -121 ACCATCAGCGATAAATATTGTTGCCATAGGTTA 8 184 1 ATAAATTGTG 0.983077 -48 TGAGGTCAGACAGAGTGTTGAGTTCCTGAG 9 8 1 AGAAAGTGTG 0.896113 -188 GCTTCATCACATATAAAGTTTTGCTGCCAATTA 16 43 0 ATAAAGTTTG 0.921076 -227 TTCTCGGTATATAAAACTTGCTGGATACAGATT 16 155 0 ATAACTTGTG 0.931379 -115 TGGATTATTGATCCAGATTGGTGTAATTACCGA 16 228 1 ATCAATTGTG 0.961507 -42 TGAAATACTTATAAATTTTGGTGGCCACGACCG 22 48 1 ATAATTTGTG 0.901552 -123 CCATATTAATATCTATAGTGCTGTAATAAAAAC 23 82 1 ATCAAGTGTG 0.946765 -54 TAAACTGATAATAAATATTTATGTTGAGGTGGT 24 14 0 ATAAATTTTG 0.942499 -68 ACAGGTCCCCATATAAATTTTTGGTGATATC 24 61 1 ATAAATTTTG 0.942499 -21 *** * **** ** Masking position 5 Map Score: 10.6138 Number of sites scoring better than the average of aligned sites = 18 Number in coding regions = 8 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 5 ATAACATAGTGGGGCAGACATGCTGCGTCAGGT 1 91 1 GGGCAGACAC 0.991142 -79 GGGTCTTGGAGGGTCTGAAAATCATAACTTGAT 2 38 1 GGGCTGAAAC 0.983838 -91 CATAATCCATGCCTCAGAAACACTGGAAGCAGG 3 24 0 GCCCAGAAAC 0.934998 -145 CCATCCCCTGGGCACAGCCTCTCGCCCATA 8 8 0 GGCCAGCCTC 0.954001 -224 CGGCATTACAGGCAAAGAATCTCTTCGGGTTTA 8 89 1 GGCAAGAATC 0.824823 -143 AATCCTTCAGGGCGCTGACACCCCAGATAGAGT 9 140 0 GGCCTGACAC 0.987188 -56 ACCAACCGATGGCTCAGAAAAACCTTAAAATTA 15 138 1 GGCCAGAAAC 0.991947 -69 ATGAAAGGCACTAAAAGCCTTTCAATTTC 17 7 1 GGCCTAAAAC 0.863532 -43 GGGGAAGATATCCCCATGGACAG 22 1 1 GGGAAGATAC 0.767614 -170 GGGTATGGTGGGGCCTCCCACCCATATAATGTC 22 92 0 GGGCTCCCAC 0.842411 -79 TTCCGGAAGTGGGCCAGCAATTCAG 23 3 0 GGGCAGCAAC 0.984776 -133 *** ****** * Masking position 13 Map Score: 8.96832 Number of sites scoring better than the average of aligned sites = 315 Number in coding regions = 292 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 6 ATTAATATGTAATCAGCACCCTAAAAATCCT 3 61 0 AATCAGCACC 0.940241 -108 AAAAACACCTTCAGCCAG 7 3 0 CACCTTCACC 0.967412 -16 ACTGGAAAAACACATGTAACCGGAATCATGG 8 42 0 CACATGTACC 0.853921 -190 TTCCCTGGAAAACCAGCACCCCTCCAGCGGA 9 110 0 AACCAGCACC 0.975758 -86 ACCCCTTTAACAGATGCAGCCATACACAAGT 10 33 1 CAGATGCACC 0.871904 -32 CTCAACCAGCACTCACGGGAGGT 11 4 1 AACCAGCATC 0.797817 -20 GTTCATGGGGCACCTTCAACCCAGCAGTATA 15 109 0 CACCTTCACC 0.967412 -98 CTCTCATCTGCATCCATTATTCCTT 16 5 1 CATCTGCACC 0.983314 -265 TTCTCATGAAAATCTGTATCCAGCAAGTTTT 16 145 1 AATCTGTACC 0.855203 -125 ******** ** Masking position 8 Map Score: 6.46502 Number of sites scoring better than the average of aligned sites = 593 Number in coding regions = 557 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 7 TCTGATTCAGGGGTAATGGCAAAATTTAAGTTGTAATTACTG 2 85 1 GGGTAAATAT 0.984208 -44 TCAAACTGAGGGGTAAAGATATTAACTCATATAATACATATT 4 32 1 GGGTAAATAT 0.984064 -86 GATGCTGCACCGGTCAGTATAGAATCTGATTTTTTTTCTCAT 8 122 1 CGGTAAATAT 0.900563 -110 TTCCCCTGGAGGGTCAGGGTTTGAGATAATTTTA 9 172 1 GGGTATATAT 0.989127 -24 AGTGCTTGGAGGGTGAGAAATTAACTTCAAGTTGTCCGATGA 15 61 0 GGGTATATAT 0.989159 -146 TATTTATATAGGATTATATGAATAGATAATATCACATAAA 15 177 1 GGATAAATAT 0.939362 -30 ACACCAATCTGGATCAATAATCCAAGTTATGGATTAACATGA 16 210 0 GGATATATAG 0.843026 -60 GGCCACGACCGGGTCAGTGATGGACATTATATGGGTGGGAGG 22 70 1 GGGTATATAT 0.989151 -101 CAGAGTACCCAGGTCAGTGATGGACATTATATAGGTGGGTAT 22 137 1 AGGTATATAT 0.89918 -34 ATGGGGACCTGTATTAATGTTGAACCTAAACTGATAATAAAT 24 31 0 GTATATATAT 0.692291 -51 **** * * * * * * Masking position 14 Map Score: 7.76607 Number of sites scoring better than the average of aligned sites = 15 Number in coding regions = 9 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 8 CCCCCACCTACATCACCCCCCGATTTACAT 1 143 0 CATCACCCCC 0.950196 -27 GGGAAAACCCCCACCTACATCA 1 158 0 GAAAACCCCC 0.850241 -12 AGACCCACAGGAATACCCTCAAATCACAGA 2 14 0 GAATACCCTC 0.704946 -115 TAAATTTTGCCATTACCCCTGAATCAGAGT 2 83 0 CATTACCCCT 0.979305 -46 GAGTTAATATCTTTACCCCTCAGTTTGAGG 4 30 0 CTTTACCCCT 0.869423 -88 TTCAATTCCCCTTAATATTATC 5 38 0 CAATTCCCCT 0.914359 -12 CCTGGAAAACCAGCACCCCTCCAGCGGAAT 9 108 0 CAGCACCCCT 0.907388 -88 CGCCCTGAAGGATTTCCCCTGGAGGGTCAG 9 159 1 GATTTCCCCT 0.929348 -37 GTCATCCATGGAAGACCCCTTTAACAGATG 10 19 1 GAAGACCCCT 0.921986 -46 AGATTACACCTATAAACGCTT 20 14 0 GATTACACCT 0.805227 -11 ********** Masking position 6 Map Score: 5.25919 Number of sites scoring better than the average of aligned sites = 399 Number in coding regions = 369 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 30 Fraction of orfs with sites within 600 bp upstream = 0.0048185 Motif number 9 CTGACGCAGCATGTCTGCCCCACTATGTTAT 1 91 0 ATTCTGCCCC 0.985409 -79 ACTCAACACTCTGTCTGACCTCA 9 3 0 CTTCTGACCT 0.785759 -193 AATTATCTCAAACCCTGACCCTCCAGGGGAA 9 172 0 AACCTGACCC 0.855124 -24 CTTGAAGTTAATTTCTCACCCTCCAAGCACT 15 72 1 ATTCTCACCC 0.963376 -135 TGCATCCATTATTCCTTCCCTTTTTAATTGG 16 19 1 ATCCTTCCCT 0.833677 -251 TATATCTCCTCCTTATATT 19 8 0 ATTCTCCTCC 0.831268 -12 GTCCATGGGGATATCTTCCCC 22 1 0 ATTCTTCCCC 0.963503 -170 TATAATGTCCATCACTGACCCGGTCGTGGCC 22 70 0 ATACTGACCC 0.974911 -101 TATAATGTCCATCACTGACCTGGGTACTCTG 22 137 0 ATACTGACCT 0.916417 -34 ACATACACTTATAACTTATCCCATATTAATA 23 62 1 ATACTTATCC 0.724197 -74 ** ******** Masking position 6 Map Score: 4.14999 Number of sites scoring better than the average of aligned sites = 281 Number in coding regions = 253 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 10 TCTGGATGGAAACTGATTGAACAGAATACT 1 16 0 AACTGATTGA 0.964072 -154 TCCACGATGATACTGATTAATATGTAATCA 3 77 0 TACTGATTAA 0.972691 -92 GCAGAATGATACTGATTAACAGGTACTCT 3 150 0 TACTGATTAA 0.972691 -19 CTCTCCCTGCACCTGATTGAGAACTATTCT 4 94 0 ACCTGATTGA 0.923594 -24 CATACACAAGTACTGATTAAAG 10 53 1 TACTGATTAA 0.972691 -12 ********** Masking position 6 Map Score: 2.97028 Number of sites scoring better than the average of aligned sites = 17 Number in coding regions = 12 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 11 CTTGATGAGCAGGCACCGACTCTGATTCAGGGG 2 65 1 AGGCAGACCT 0.811959 -64 TGTAGTATCTGGTGGTAGCCACTGCAGAGTACC 3 125 1 GGTGGGCCCT 0.853087 -44 TGGGAGACGACCCCAGCGAACTTT 6 2 1 GGGAGGACCC 0.960889 -35 GCCATCCCCTGGGCACAGCCTCTCGCCCATA 8 9 0 GGGCAGCCCT 0.98534 -223 GCTGTGCCCAGGGGATGGCCCATGATTCCGGTT 8 23 1 GGGGAGCCAT 0.807804 -209 AAATCCTTCAGGGCGCTGACACCCCAGATAGAG 9 141 0 GGGCGGACCC 0.937877 -55 GGTGGTCATAGACACCAATTTTTT 21 4 1 GGTCAGACCC 0.977743 -21 TCACTGACCCGGTCGTGGCCACCAAAATTTATA 22 57 0 GGTCGGCCCC 0.959382 -114 ACATTATATGGGTGGGAGGCCCCACCATACCCT 22 93 1 GGTGGGGCCC 0.864063 -78 ***** *** ** Masking position 10 Map Score: 7.39574 Number of sites scoring better than the average of aligned sites = 338 Number in coding regions = 323 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 12 TCTCCCGTAAAAAAAGTTCGCTG 6 24 0 TCCCTAAAAA 0.588794 -13 TCATATCACCGTTATTAAGTCATTTCTG 12 37 0 ACCGTATTAA 0.832613 -18 ACCCCGTTTAATTTCCCTGGT 14 1 1 ACCCGTTTAA 0.51309 -75 ATCAATATGTACCTGAATTAACCAGGGAAAT 14 21 0 ACCTAATTAA 0.611754 -55 ATTCATATAATCCTATATAAATATATCGCTA 15 169 0 TCCTTATAAA 0.858965 -38 CATTATTCCTTCCCTTTTTAATTGGCAGCAA 16 25 1 TCCCTTTTAA 0.760976 -245 TAAATCACCTTTATTAAATTGAAATTG 17 33 0 ACCTTATTAA 0.931525 -17 AGATTACACCTATAAACGCTTTTA 20 9 0 ACACTATAAA 0.630824 -16 GGGGCCTCCCACCCATATAATGTCCATCACT 22 85 0 ACCCTATAAT 0.841236 -86 CTATACCCACCTATATAATGTCCATCACT 22 152 0 ACCTTATAAT 0.705744 -19 TTATAACTTATCCCATATTAATATCTATAGT 23 70 1 TCCCTATTAA 0.939714 -66 TTATATGGGGACCTGTATTAATGTTGAACCT 24 46 0 ACCTTATTAA 0.931525 -36 TAATACAGGTCCCCATATAAATTTTTGGTGA 24 57 1 CCCCTATAAA 0.858384 -25 **** ****** Masking position 10 Map Score: 4.50955 Number of sites scoring better than the average of aligned sites = 186 Number in coding regions = 141 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 13 TACATCAGATATAAATTGATGGAATTGATGAAA 1 47 0 ATAATTGAGA 0.850868 -123 TCTGAAAATCATAACTTGATGAGCAGGCACCGA 2 51 1 ATACTTGAGG 0.984101 -78 ATAATACATATTACATTGATGAGGATTCCATGA 4 62 1 TTAATTGAGG 0.964581 -56 CCCCTTAATATTATCTTGAAGTATCCTTAAATA 5 20 0 TTACTTGAGA 0.956496 -30 GAGGAATATTATACCTTGAGGGGCCCCGGGTCC 9 38 1 ATACTTGAGG 0.984101 -158 AAGTTATGGATTAACATGAAGTGGGTGAGTACC 16 196 0 TTACATGAGG 0.943606 -74 TAATAAATATTTATGTTGAGGTGGTTAA 24 6 0 TTAGTTGAGG 0.958142 -76 *** ***** * * Masking position 9 Map Score: 3.07129 Number of sites scoring better than the average of aligned sites = 60 Number in coding regions = 52 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 14 CTGCCGGGACGGTCTCATCCCT 4 2 1 TGCCGGGAGG 0.963973 -116 CGAGAGGCTGTGCCCAGGGGATGGCCCATGA 8 17 1 TGCCCAGGGA 0.799245 -215 TTGCCTGTAATGCCGGGGTGATAAACTGATA 8 73 0 TGCCGGGGGA 0.979351 -159 GGTCCCGTGATGCCCGGGAGGCCTTCCGTGT 9 66 1 TGCCCGGGGG 0.995017 -130 GGGGTGTCAGCGCCCTGAAGGATTTCCCCTG 9 149 1 CGCCCTGAGG 0.949574 -47 CTGAAGGATTTCCCCTGGAGGGTCAGGGTTT 9 163 1 TCCCCTGGGG 0.831594 -33 TCCAGTAAGACGCCCAGGAAAACAAGGATTA 16 88 0 CGCCCAGGAA 0.811354 -182 ******** ** Masking position 7 Map Score: 3.51071 Number of sites scoring better than the average of aligned sites = 296 Number in coding regions = 282 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987 Motif number 15 GTCTGCCCCACTATGTTATTAATTATATCAT 1 79 0 CTATGTATTA 0.870385 -91 TGATCTGTGATTTGAGGGTATTC 2 3 1 ATCTGTATTT 0.845472 -126 ATACTGATTAATATGTAATCAGCACCCTAAA 3 67 0 ATATGTATCA 0.888638 -102 GCAAAACTTTATATGTGATGAAGCTTTAATT 16 52 1 ATATGTATGA 0.888638 -218 TCTACCATCCATCGGTAATTACACCAATCTG 16 241 0 ATCGGTATTA 0.890221 -29 CTTGAACGGAATCTGTCATTATTATTAATGA 25 11 1 ATCTGTATTA 0.963442 -54 TTTATAGGAAATATGTCATTAATAATAATGA 25 26 0 ATATGTATTA 0.956164 -39 ****** **** Masking position 8 Map Score: 0.515516 Number of sites scoring better than the average of aligned sites = 20 Number in coding regions = 13 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493