AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i199_trans1_tpal_reg_300.orf -o199_tpal_300.ace -a/home/amcguire/alignace/lib/ORF_tpal.txt -z/skink1/amcguire/genomes/tpal.fna -g0.53 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.53 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: RTP00282 17 AE000520 Input sequences: #1 RTP00386 105 AE000520 #2 RTP01082 116 AE000520 #3 RTP01072 141 AE000520 #4 RTP01088 169 AE000520 #5 RTP00306 147 AE000520 #6 RTP00305 54 AE000520 #7 RTP00304 63 AE000520 #8 RTP00303 71 AE000520 #9 RTP00302 46 AE000520 #10 RTP00299 55 AE000520 #11 RTP00286 187 AE000520 #12 RTP01071 100 AE000520 #13 RTP01112 99 AE000520 #14 RTP00264 30 AE000520 #15 RTP01113 234 AE000520 #16 RTP01114 149 AE000520 #17 RTP00261 106 AE000520 #18 RTP00258 108 AE000520 #19 RTP00257 262 AE000520 #20 RTP00255 102 AE000520 #21 RTP00254 21 AE000520 #22 RTP00816 164 AE000520 #23 RTP00038 23 AE000520 #24 RTP01010 107 AE000520 #25 RTP00035 36 AE000520 #26 RTP01003 103 AE000520 #27 RTP01001 90 AE000520 #28 RTP01158 249 AE000520 #29 RTP00025 300 AE000520 #30 RTP00480 300 AE000520 #31 RTP00479 210 AE000520 #32 RTP00609 300 AE000520 #33 RTP00625 123 AE000520 #34 RTP00626 92 AE000520 Motif number 1 CCGCCCGTACGAAAAAGTACC 1 95 0 CCGCCGTACG 0.529591 -11 GTGTCCTTTGGCATGAGCACCTTTCTTTCTT 2 23 1 GCATGGCACC 0.434546 -94 ATTCCTGCAAGAACCGCCGCAGGAATGGTAA 2 53 0 GAACCCCGCA 0.788021 -64 CGCAGAACACGCTCGCGCACGGAAGTGCGTT 3 50 0 GCTCGGCACG 0.864811 -92 CTGAGGATCGGCGGAAGCACGGCCTTGTGCT 3 98 1 GCGGAGCACG 0.671747 -44 AATACCACCACCTGCCGCGCGTACGCATACG 4 57 1 CCTGCGCGCG 0.954634 -113 ACGGACACTGCAACGTGCACACGTACTCCAT 4 118 1 CAACGGCACA 0.850984 -52 GGAAGACTTTCAGCGAGCGCAGCATATGATG 4 146 0 CAGCGGCGCA 0.974645 -24 CACCCCACGCCAACGCGCACGACCTGCCTTC 5 40 1 CAACGGCACG 0.917963 -108 CTGCGATGCACCAGACGCGCCTCCCCAGAG 5 128 1 CCAGAGCGCC 0.709076 -20 CCAAAAAGCTGCGTCACCGCCTGCTTAATCT 6 33 1 GCGTCCCGCC 0.633344 -22 ACATAGTCCGCGTGCCCAGGACAATCAA 8 8 1 CCGCGGCCCA 0.830272 -64 CCAGGACAATCAATATGCGCGTAATGACGAC 8 26 1 CAATAGCGCG 0.667084 -46 GCCTCTCAGGCACCGCGCACAACCAGC 9 7 1 CAGGCCCGCG 0.891134 -40 GCACCGCGCACAACCAGCGCGGGATCCAAGC 9 20 1 CAACCGCGCG 0.985178 -27 CCTGATATCTGCATGAGCACGGACGGCAGTT 11 28 1 GCATGGCACG 0.685137 -160 AGAGCATTTTCCGCCAGCGCCTACCCTTCCG 11 69 1 CCGCCGCGCC 0.988525 -119 CTCCGCAAACCCTGGCCCGCGGGGCCTTTGC 12 58 0 CCTGGCCGCG 0.727034 -43 TCCGTGGGTACACCCTGCGCG 13 1 0 CACCCGCGCG 0.963264 -99 TTGCCATGCGCAGTGAGCGCAGGCCAGTGTT 13 36 0 CAGTGGCGCA 0.875504 -64 GAATGAGGACGGTTCTGCGCGGAAGTGCTCT 15 41 0 GGTTCGCGCG 0.535691 -194 GCCTGGTACGCACCGCCCGCATCCAACAACA 15 93 1 CACCGCCGCA 0.613326 -142 ACCGCACCGAGAATCTGCACAAGATCACGCT 15 213 1 GAATCGCACA 0.491619 -22 TACTGAGCAGGCAGCTGCGCGTACGCACCAG 16 51 1 GCAGCGCGCG 0.958456 -99 TACGCACCAGCAACCTGCGCGACAAGGTGAA 16 72 1 CAACCGCGCG 0.985178 -78 GTGCAGCGTACCACCTGCACCATGACAACCA 17 59 1 CCACCGCACC 0.927537 -48 TGTACTCAACGCTCATGCGCATTCCTACACC 18 14 1 GCTCAGCGCA 0.761658 -95 AACTCATTGGGCTCCTGCACGTCGGAGAATT 19 46 1 GCTCCGCACG 0.914841 -217 TCCCGAGCATGCACGCGCGCAGTTTTTTTTG 19 162 0 GCACGGCGCA 0.955497 -101 ACGAACGGCTCAGGGAGCACCCCCACTACGT 20 13 1 CAGGGGCACC 0.710658 -90 CGTGCACCGCGTGGTGCACCA 21 1 1 CGTGCCCGCG 0.34933 -21 TTCCACAAAACCGCCGGCGCAGGATCCGAAA 26 28 1 CCGCCGCGCA 0.992032 -76 AGAGCTGTTGCACCCGGCGCAG 26 92 1 CACCCGCGCA 0.930542 -12 CCTCGTTTTACCACCAGCACATTCGCGTAGG 27 23 1 CCACCGCACA 0.94871 -68 CCTGATGCCTCAGCCTACGCGAATGTGCTGG 27 36 0 CAGCCACGCG 0.711457 -55 ATCAAAAGCCCCGGCAGCCCAGTGATGTGGT 28 25 1 CCGGCGCCCA 0.728495 -225 ACCGCACCATCGGCCTCCGCAATGAGAAGGA 30 197 0 CGGCCCCGCA 0.804597 -104 GCCTTGCGTACCCCAACCGCGAGCCTTGACA 30 242 0 CCCCACCGCG 0.623888 -59 GCCAGCGCATGGACGCGCGCG 31 1 0 GGACGGCGCG 0.87496 -210 CCGAAATCGGAAGCCAGCGCATGGACGCGCG 31 13 0 AAGCCGCGCA 0.624319 -198 AAGAGGAGCGCCGCCTGCGACGTAAGACCGA 31 40 0 CCGCCGCGAC 0.58443 -171 ATCGCCTGCGCACGCGTACCTT 32 2 1 TCGCCGCGCA 0.762193 -299 TGGGGGTTTGGAATGAGCGCGGAAATAAAGA 32 33 1 GAATGGCGCG 0.799625 -268 ATATGCGGCACCGCATGCACACTTCCTAGCG 32 110 1 CCGCAGCACA 0.852948 -191 GGTACGTGCACATCCTGCGCGACACCATCGC 32 192 0 CATCCGCGCG 0.972778 -109 TATCCTAAAAGCGGaAGCACAAGACTGAAAG 32 241 0 GCGGaGCACA 0.510862 -60 AGCGCTGTGGCAGCCTGCACGGGGCGCTGAA 32 275 1 CAGCCGCACG 0.972795 -26 ACAGATTCAGCGCCCCGTGCAGGC 32 287 0 GATTCGCGCC 0.560059 -14 CGTTCGCACTCCGCGCGCGCACTGAATT 33 8 0 CCGCGGCGCA 0.986691 -116 TGGTTGAAGCGAACGCGCGCGAGTTTGTTTC 34 50 1 GAACGGCGCG 0.956165 -43 ***** ***** Masking position 8 Map Score: 57.8974 Number of sites scoring better than the average of aligned sites = 5832 Number in coding regions = 5437 Number in noncoding regions = 395 Number of orfs with sites within 600 bp upstream = 198 Fraction of orfs with sites within 600 bp upstream = 0.0318021 Motif number 2 TGTCGGAAGGTCAGATTCTGCTTGACGGGTGCGA 3 9 1 GTCTTCTGCG 0.896271 -133 TTCCGTGCGCGAGCGTGTTCTGCGTGGTGTCAGTTA 3 57 1 GGCTTCTGCG 0.978781 -85 AGATGCGTATGCGTACGCGCGGCAGGTGGTGGTATT 4 57 0 GGTCGCGGCG 0.750428 -113 CTCTGGGGAGGCGCGTCTGGTGCATCGCAGGTGCTA 5 122 0 GGCTGGTGCC 0.751869 -26 ACTCCAAAAAGCTGCGTCACCGCCTGCTTAATCTG 6 30 1 GTGCACCGCG 0.376512 -25 CTTGGATCCCGCGCTGGTTGTGCGCGGTGCCTGAGA 9 14 0 GGCTTGTGCG 0.84969 -33 TTGGGCCGCAGAGCATTTTCCGCCAGCGCCTACCCT 11 60 1 GGCTTCCGCG 0.994127 -128 TACCCTTCCGGTGTTGTTTCCCTTAGAAGCGTGCAT 11 90 1 GGTTTCCCTG 0.715689 -98 TCCCTTAGAAGCGTGCATTCCTCCACGTGTGTTTAA 11 108 1 GGTTTCCTCC 0.802568 -80 TCGAGGTGCTAGTGCCGTAAGGCTTGCTGGT 12 6 1 GGCTGCCGTG 0.952152 -95 GGGCGTGTACGCCGCTCCTCTGCTCCGC 12 83 0 GGTCGCCGCC 0.915972 -18 ACACTGGCCTGCGCTCACTGCGCATGGCAATTACCG 13 37 1 GGCCTGCGCG 0.901438 -63 GCAATTACCGGCGCCGTTTCCGTCAGACCGTACCCC 13 63 1 GGCTTCCGTG 0.9605 -37 ATTACGGTGCGTGCCTCTACCGCACCGAGAATCTGC 15 195 1 GGCTACCGCC 0.955377 -40 CTAAGTACCAGTGCGGCTTCCCCTGCGGTGAACAAG 17 12 0 GGCTTCCCCC 0.976811 -95 CCAAGATTTTGCGCTGTTTCCTCACCTCTCTCTTGA 19 88 1 GGCTTCCTCC 0.937179 -175 CCACCCGTTGCTTTTCCCCATGGGACAGCGTG 19 241 0 GTGTTCCCCG 0.729445 -22 GCACCACGTAGTGGGGGTGCTCCCTGAGCCGTTCGT 20 13 0 GGGTGCTCCG 0.759426 -90 CAAGGTATCAGAGCCGCTTGCGCTTGCAGTGTTCAA 20 60 1 GGCTTGCGCG 0.954013 -43 AAGAAAGGGGGGCCCGTTACCGTGACAGATCCTGCC 22 96 0 GCCTACCGTC 0.198615 -69 GTGCGAGGGTGTTCCTATTCTGCACG 24 1 0 GTCTTCTGCG 0.896271 -107 CATCTAGCAAGAGCTGTTGCACCCGGCGCAG 26 83 1 GGCTGCACCG 0.645662 -21 TCCAGCGTAAGCTCAGACGCCGCAACGACACTTGGG 28 95 1 GTCCGCCGCC 0.882258 -155 AACGACACTTGGGTACCTTCCCCAGCGTCGAACAGA 28 118 1 GGTTTCCCCC 0.919863 -132 TCGTGAGGGAGAGTTGTTTCTGTTCGACGCTGGGGA 28 136 0 GGTTTCTGTG 0.643559 -114 TCTGACTTCTGTGTTGTTGCGTCGTGAGGGAGAGTT 28 157 0 GGTTGCGTCG 0.478518 -93 TGGCGGCATGGTGCCATTACCCCATCGGCATCTGAC 28 187 0 GGCTACCCCC 0.89056 -63 TGTCAGTGCCGTCCAGATTCCGCATCGCGTGATCTA 29 37 1 GCCTTCCGCC 0.899305 -264 CTTTGGCCGTGCGTGTGTTCCTTCAGGGGCGTCTAC 29 213 0 GGTTTCCTTG 0.471307 -88 CACTTCGACAGTGGGGTTTCCCCGAGAATCGATGAT 29 272 1 GGGTTCCCCG 0.935036 -29 ACGCAAAAGCGTGGTCTTTCCGCAGCCTGAAGGACC 30 38 1 GGGTTCCGCC 0.961264 -263 CCGTGCCACCGTTCACATTCGGCAGGGAGAGTTTTT 30 84 0 GTCTTCGGCG 0.851397 -217 TTCATCCCTCGGACCCTTTCTGCGTCCAAATATTGT 31 71 1 GACTTCTGCC 0.471518 -140 ACGCTAGGAAGTGTGCATGCGGTGCCGCATATACCA 32 106 0 GGTTGCGGTC 0.39089 -195 CAGTGGGTACGTGCACATCCTGCGCGACACCATCGC 32 192 0 GGCTCCTGCG 0.800571 -109 ACAGATTCAGCGCCCCGTGCAGGCTGCCA 32 282 0 GTTCGCCCCG 0.542186 -19 TGGTAATCGCGTTCGCACTCCGCGCGCGCACTGAAT 33 12 0 GTCCTCCGCG 0.933243 -112 ACAAACTCGCGCGCGTTCGCTTCAACCAAGTCTGTA 34 42 0 GGCCGCTTCC 0.594582 -51 * ** ****** * Masking position 1 Map Score: 44.8052 Number of sites scoring better than the average of aligned sites = 2026 Number in coding regions = 1903 Number in noncoding regions = 123 Number of orfs with sites within 600 bp upstream = 82 Fraction of orfs with sites within 600 bp upstream = 0.0131706 Motif number 3 GGTATGTATGCAGGGCTCGCCGGTGTGTTGCTA 1 56 1 CAGGTCGCGG 0.951051 -50 CAGTGTGTGTCGGTGTCCTTTGG 2 1 1 CATGGTGCGG 0.733887 -116 ACCATTCCTGCAAGAACCGCCGCAGGAATGGTA 2 54 0 CAGACCGCGC 0.779223 -63 GTTTGATACCAGGGGTGTTGCGC 2 104 1 AGGGGTTCGC 0.390567 -13 GTTACATTCCTGAGGATCGGCGGAAGCACGGCC 3 89 1 TGGGTCGCGG 0.658639 -53 GAAAATAGGACAGGGAGCGGGGCATTTATATCG 4 12 0 CAGGGCGGGC 0.953929 -158 TGCGCGTTGGCGTGGGGTGCGGCCGACAGTTCG 5 26 0 CGGGGTGGGC 0.847124 -122 TTTTTGGAGTAACGGTTAGGCGGTGTACG 6 7 0 AAGGTAGCGG 0.706194 -48 CAGATTAAGCAGGCGGTGACGCAGCTTTTTGG 6 33 0 CAGCGTGCGC 0.966375 -22 GCTGGCGGAAAATGCTCTGCGGCCCAAAAACTG 11 54 0 AAGCCTGGGC 0.67128 -134 ACCGGAAGGGTAGGCGCTGGCGGAAAATGCTCT 11 69 0 TAGCCTGCGG 0.79896 -119 GTCCGCCGCAAAGGCCCCGCGGGCCAGGGTTTG 12 51 1 AAGCCCGGGG 0.80276 -50 TTTGCGGAGCAGAGGAGCGGCGTACACGCCC 12 80 1 AGGGGCGCGT 0.880942 -21 GCTTGAGGGGTACGGTCTGACGGAAACGGCGCC 13 72 0 TAGGCTGCGG 0.882708 -28 GCATACTGAGCAGGCAGCTGCGCGTACGCACCA 16 48 1 CAGCGCTCGC 0.686536 -102 TTGTTCACCGCAGGGGAAGCCGCACTGGTACTT 17 13 1 CAGGAAGCGC 0.471394 -94 ACCCCCACTACGTGGTGCGACGTGGAACACAAG 20 31 1 CGGGGCGCGT 0.927614 -72 GTTCAAAAATAAGGGTGAGACGT 20 90 1 AAGGGAGCGT 0.773774 -13 AGTAGGAGTAAATGGAGCGTCGTATC 22 4 0 AAGGGCGCGT 0.941052 -161 GCTTTCGGATCCTGCGCCGGCGGTTTTGTGGAA 26 28 0 CCGCCCGCGG 0.819078 -76 TCTTTCTGCACGGCGTGACGGGCTTGCAGTG 27 70 0 CAGGGTGCGG 0.984302 -21 AGACCACATCACTGGGCTGCCGGGGCTTTTGAT 28 25 0 ACGGCTGCGG 0.741088 -225 TCTTCCAGCGTAAGCTCAGACGCCGCAACGACA 28 92 1 TAGCCAGCGC 0.561506 -158 GCGTTTATTTTAGGGTGTGGCGGCATGGTGCCA 28 207 0 TAGGGTGCGG 0.93072 -43 GTGGATGTCTCGCTCAGTGACGGTAGCTTTGGC 29 242 0 CGTCGTGCGG 0.402929 -59 TGGCACGGTCAACGGCGAGGCAGTGACCGTATG 30 112 1 AAGGGAGCAG 0.245275 -189 CAGACCGTGAAAGGATGCGCCGTCACCATCGAC 30 158 0 AAGAGCGCGT 0.516104 -143 CGCATCCTTTCACGGTCTGTCGCACTCCTTCTC 30 172 1 CAGGCTGCGC 0.968255 -129 TATGTTCTGTCAAGGCTCGCGGTTGGGGTACGC 30 235 1 CAGGTCGGGT 0.520665 -66 AGGGATGAAAAGAGGAGCGCCGCCTGCGACGTA 31 47 0 AGGGGCGCGC 0.961884 -164 TGGACGCAGAAAGGGTCCGAGGGATGAAAAGAG 31 66 0 AAGGCCGGGG 0.885227 -145 ACATGTCCGCAACGCATTGGCGCGGTTACGACC 31 131 1 AAGCTTGCGC 0.748127 -80 GATACGATAAAGCCGCGACGGACTATAATTT 31 190 0 AAGCGCGCGG 0.970684 -21 AGGAAGTGTGCATGCGGTGCCGCATATACCAAC 32 104 0 CAGCGTGCGC 0.966387 -197 ** ** *** *** Masking position 12 Map Score: 36.1589 Number of sites scoring better than the average of aligned sites = 1201 Number in coding regions = 1084 Number in noncoding regions = 117 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 4 CACATCAGGCGGCGTGTGATGCTTGCAACGA 1 17 1 GGCTGTGATG 0.77161 -89 TTGCAGGAATGGTAGGGGGAGGACTGTGGGG 2 74 1 GGTGGGGGAG 0.935488 -43 GCGTACGCGCGGCAGGTGGTGGTATTTGTAC 4 52 0 GGCGGTGGTG 0.989219 -118 CGTGCGCGTTGGCGTGGGGTGCGGCCGACAG 5 30 0 GGCTGGGGTG 0.984865 -118 CTTTGGGGAAGGCAGGTCGTGCGCGTTGGCG 5 47 0 GGCGGTCGTG 0.812553 -101 TCTGGGGAGGCGCGTCTGGTGCATCGCAGGT 5 126 0 CGCTCTGGTG 0.566538 -22 TGGAGTAACGGTTAGGCGGTGTACG 6 5 0 GTTGGCGGTG 0.543448 -50 CAGATTAAGCAGGCGGTGACGCAGCTTT 6 37 0 AGCGGCGGTG 0.901844 -18 AGTGATACTTGGCACAGGGTGCATGAAGAAA 7 43 0 GGCCAGGGTG 0.936249 -21 TTGGATCCCGCGCTGGTTGTGCGCGGTGCCT 9 18 0 CGCGGTTGTG 0.608308 -29 ACACCGGAAGGGTAGGCGCTGGCGGAAAATG 11 73 0 GGTGGCGCTG 0.677527 -115 CGCAAACCCTGGCCCGCGGGGCCTTTGCGGC 12 55 0 GGCCGCGGGG 0.884379 -46 CGCGGGCCAGGGTTTGCGGAGCAGAGGAGCG 12 68 1 GGTTGCGGAG 0.811196 -33 CGCGCAGGGTGTACCCACGGA 13 1 1 CGCCAGGGTG 0.886334 -99 TGTTGTTGGATGCGGGCGGTGCGTACCAGGC 15 93 0 TGCGGCGGTG 0.941869 -142 TTGTCGCGCAGGTTGCTGGTGCGTACGCGCA 16 66 0 GGTGCTGGTG 0.636247 -84 GCTTGTTCACCGCAGGGGAAGCCGCACTGGT 17 11 1 CGCGGGGAAG 0.81959 -96 ATACGAACGGCTCAGGGAGCACCCCCACT 20 9 1 GGCCAGGGAG 0.821604 -94 GAGCCGCTTGCGCTTGCAGTGTTCAAAAATA 20 70 1 CGCTGCAGTG 0.81698 -33 TCGGATCCTGCGCCGGCGGTTTTGTGGAATG 26 26 0 CGCGGCGGTT 0.845059 -78 CGGCGTGACGGGCTTGCAGTGGAACCTGATG 27 60 0 GGCTGCAGTG 0.893696 -31 TTCTGTTCGACGCTGGGGAAGGTACCCAAGT 28 124 0 CGCGGGGAAG 0.819431 -126 GTTCACATTCGGCAGGGAGAGTTTTTCTCCA 30 79 0 GGCGGGAGAG 0.898969 -222 TTTGAGACCTGGTCGATGGTGACGGCGCATC 30 147 1 GGTGATGGTG 0.755432 -154 TCATTGCGGAGGCCGATGGTGCGGTATTTGG 30 203 1 GGCGATGGTG 0.936185 -98 GTTCTGTCAAGGCTCGCGGTTGGGGTACGCA 30 238 1 GGCCGCGGTT 0.811599 -63 GGTCTTACGTCGCAGGCGGCGCTCCTCTTTT 31 42 1 CGCGGCGGCG 0.882661 -169 TACCTTTGGGGGTTTGGAATGAGCGCGGAAA 32 27 1 GGTTGGAATG 0.180302 -274 CTAGGAAGTGTGCATGCGGTGCCGCATATAC 32 108 0 TGCTGCGGTG 0.827609 -193 GCGATGGTGTCGCGCAGGATGTGCACGTACC 32 192 1 CGCCAGGATG 0.492144 -109 ATTCAGTGCGCGCGCGGAGTGCGAACGCGAT 33 12 1 CGCCGGAGTG 0.862959 -112 GCCTTTTTAGGGTGGGGGGAGCGCTATACAG 34 16 1 GGTGGGGGAG 0.935487 -77 *** ******* Masking position 2 Map Score: 31.9788 Number of sites scoring better than the average of aligned sites = 1500 Number in coding regions = 1331 Number in noncoding regions = 169 Number of orfs with sites within 600 bp upstream = 123 Fraction of orfs with sites within 600 bp upstream = 0.0197559 Motif number 5 GTTGGCGTGGGGTGCGGCCGACAGTTCGTGG 5 23 0 GGTGCGGCCA 0.751045 -125 GTGCTTGAGGGGTACGGTCTGACGGAAACGG 13 76 0 GGTACGGTCG 0.954953 -24 TTCATCGCCTGGTACGCACCGCCCGCATCCA 15 87 1 GGTACGCACG 0.931886 -148 CACGATCTGCGACACGCTCGGCAACGCATCA 15 122 1 GACACGCTCG 0.862897 -113 GTGCGGTAGAGGCACGCACCGTAATTGTGGA 15 189 0 GGCACGCACG 0.892121 -46 GCAGATTCTCGGTGCGGTAGAGGCACGCACC 15 200 0 GGTGCGGTAA 0.929497 -35 TGGTGCAGGTGGTACGCTGCACTTGTGGTGT 17 50 0 GGTACGCTGA 0.907426 -57 GGGAGTGGATGGCACGCTTTGGTTTACAGAA 19 189 1 GGCACGCTTG 0.719609 -74 CGAAGGTATGGATGCGCTCAACCAGGGTGAG 29 74 0 GATGCGCTCA 0.921159 -227 GCTCATTGCTGATACGCTCGAAGGTATGGAT 29 92 0 GATACGCTCA 0.898094 -209 ATGGAGACAAGGAGCGCTATAACGGTAAGGG 29 153 0 GGAGCGCTAA 0.898426 -148 CcGAGAGTTCGAGGCGCTCGAAATGCGTGAT 29 182 0 GAGGCGCTCA 0.786838 -119 ACCCTGCAATGATACGCAAAAGCGTGGTCTT 30 25 1 GATACGCAAA 0.578948 -276 TGTGAACGGTGGCACGGTCAACGGCGAGGCA 30 103 1 GGCACGGTCA 0.915582 -198 GGAGGCCGATGGTGCGGTATTTGGGTATGTT 30 210 1 GGTGCGGTAT 0.60428 -91 TCGCGGTTGGGGTACGCAAGGCGTCCGTGTG 30 251 1 GGTACGCAAG 0.883482 -50 ATAACCAAATGGAACGCTAGGAAGTGTGCAT 32 124 0 GGAACGCTAG 0.88742 -177 ATCAGTTATGGGTGCGGTATGGGAAATGCAT 32 161 1 GGTGCGGTAG 0.939673 -140 CAGCCTGCACGGGGCGCTGAATCTGT 32 285 1 GGGGCGCTGA 0.804136 -16 TAGGGTGGGGGGAGCGCTATACAGACTTGGT 34 23 1 GGAGCGCTAA 0.898426 -70 ********* * Masking position 6 Map Score: 16.4473 Number of sites scoring better than the average of aligned sites = 749 Number in coding regions = 701 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 6 CTTTCTTTACCATTCCTGCGGCGGTTCTTGCA 2 47 1 CTTCCTGCGC 0.880555 -70 CTCCCCCTACCATTCCTGCAAGAACCGCCGCA 2 63 0 CTTCCTGCAG 0.954188 -54 TGAGATACGACTTTTCTTCATGCACCCTGTGC 7 31 1 CTTTCTTCAG 0.862834 -33 TAGAAGCGTGCATTCCTCCACGTGTGTTTAAA 11 113 1 CTTCCTCCAG 0.948161 -75 CGCTCATGCGCATTCCTACACCTGTTATTTTT 18 23 1 CTTCCTACAC 0.693699 -86 CATATCATTCCAATTCTCCGACGTGCAGGAGC 19 56 0 CATTCTCCGC 0.512839 -207 GATTTTGCGCTGTTTCCTCACCTCTCTCTTGA 19 92 1 TTTTCCTCAC 0.486291 -171 GGTTACCGATCGTGTCTCCATGTTCTGTAAAC 19 210 0 CTGTCTCCAG 0.876758 -53 CCACCCGTTGCTTTTCCCCATGGGACAGCGTG 19 241 0 CTTTCCCCAG 0.92954 -22 GAGGGTGTTCCTATTCTGCACG 24 1 0 CATTCTGCAG 0.772153 -107 TCTTTCTGCACGGCGTGACGGG 27 79 0 TTTTCTGCAG 0.853466 -12 GGCATGGTGCCATTACCCCATCGGCATCTGAC 28 187 0 CTTACCCCAC 0.608867 -63 TATAGCGCTCCTTGTCTCCATCACGCATTTCG 29 163 1 CTGTCTCCAC 0.887495 -138 GCCGTGCGTGTGTTCCTTCAGGGGCGTCTACC 29 212 0 TTTCCTTCAG 0.542052 -89 AAAAGCGTGGTCTTTCCGCAGCCTGAAGGACC 30 42 1 TTTTCCGCAC 0.792599 -259 GCAGGGAGAGTTTTTCTCCATCCTCGGTCCTT 30 67 0 TTTTCTCCAC 0.850066 -234 TCCCTCGGACCCTTTCTGCGTCCAAATATTGT 31 75 1 CTTTCTGCGC 0.899856 -136 AAGTGAACGACATGTCCGCAACGCATTGGCGC 31 122 1 CTGTCCGCAC 0.841701 -89 TTTGTTTCCTCGTTCCTGCACGGAGAACGA 34 73 1 CTTCCTGCAG 0.954188 -20 * ******** * Masking position 6 Map Score: 15.7035 Number of sites scoring better than the average of aligned sites = 313 Number in coding regions = 287 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 7 GTTACATTCCTGAGGATCGGCGGAAGCACG 3 89 1 TGAGGATCGG 0.651917 -53 GAAAATAGGACAGGGAGCGGGGCATTTATA 4 15 0 CAGGGAGCGG 0.972363 -155 ATAACATCGGAAGAGAGCGGAAACGGACAC 4 96 1 AAGAGAGCGG 0.89728 -74 GGAAGACTTTCAGCGAGCGCAGCATATGAT 4 147 0 CAGCGAGCGC 0.85108 -23 CGCGTTGGCGTGGGGTGCGGCCGACAGTTC 5 27 0 TGGGGTGCGG 0.669292 -121 CGCGTAATGACGACGATCGGACTGATACTC 8 43 1 CGACGATCGG 0.60444 -29 TTTGCGGAGCAGAGGAGCGGCGTACACGCC 12 80 1 AGAGGAGCGG 0.972814 -21 TTGCCATGCGCAGTGAGCGCAGGCCAGTGT 13 37 0 CAGTGAGCGC 0.676924 -63 GTACGTCCTCCGAAGAGCGGATTGAACGGA 16 115 0 CGAAGAGCGG 0.957911 -35 GGAAAGAGGAGAGGTTTAAAGCGC 17 93 0 AGAGGAGAGG 0.846244 -14 TATTGTCTTCAAGAGAGAGGTGAGGAAACA 19 102 0 AAGAGAGAGG 0.573294 -161 ATTTGTTCAATAAAGAGCGGCATGATAGAA 22 133 1 TAAAGAGCGG 0.784321 -32 CTTGAGAAGAGAGCATCAAAAGCC 28 5 1 AGAAGAGAGC 0.570552 -245 GTGATGGAGACAAGGAGCGCTATAACGGTA 29 157 0 CAAGGAGCGC 0.944326 -144 AGGGATGAAAAGAGGAGCGCCGCCTGCGAC 31 50 0 AGAGGAGCGC 0.956019 -161 TTTTAGGGTGGGGGGAGCGCTATACAGACT 34 20 1 GGGGGAGCGC 0.893932 -73 ********** Masking position 5 Map Score: 12.7251 Number of sites scoring better than the average of aligned sites = 590 Number in coding regions = 530 Number in noncoding regions = 60 Number of orfs with sites within 600 bp upstream = 56 Fraction of orfs with sites within 600 bp upstream = 0.00899454 Motif number 8 CCTGCAAGAACCGCCGCAGGAATGGTAAAG 2 51 0 CCGCCGCAGG 0.876595 -66 GTATGCGTACGCGCGGCAGGTGGTGGTATT 4 57 0 GCGCGGCAGG 0.800703 -113 CGCGTCTGGTGCATCGCAGGTGCTATGCCA 5 117 0 GCATCGCAGG 0.972699 -31 AAAAGCTGCGTCACCGCCTGCTTAATCTG 6 36 1 TCACCGCCTG 0.954339 -19 CCGCGCACAACCAGCGCGGGATCCAAGCGC 9 23 1 CCAGCGCGGG 0.808128 -24 CGCCGCAAAGGCCCCGCGGGCCAGGGTTTG 12 54 1 GCCCCGCGGG 0.86647 -47 AACTCATCCTTCATCGCCTGGTACGCACCG 15 78 1 TCATCGCCTG 0.921282 -157 CGCCTGGTACGCACCGCCCGCATCCAACAA 15 92 1 GCACCGCCCG 0.912137 -143 GCTTGTTCACCGCAGGGGAAGCCGCA 17 7 1 TCACCGCAGG 0.956503 -100 GGATCGGTTTTTATCGCCGGAACAAACGTA 19 17 1 TTATCGCCGG 0.381583 -246 CGTGCACCGCGTGGTGCACCA 21 4 1 GCACCGCGTG 0.977604 -18 AAGAATCGTGTCATGGCAGGATCTGTCACG 22 82 1 TCATGGCAGG 0.721137 -83 CTTCCACCTTGCATTGCCTGTGGATGCCAG 24 42 0 GCATTGCCTG 0.818927 -66 TCTTTCTGCACGGCGTGACGGGCTTGC 27 74 0 GCACGGCGTG 0.901644 -17 TCCAGATTCCGCATCGCGTGATCTATCTCA 29 48 1 GCATCGCGTG 0.960698 -253 CTTTTGCGTATCATTGCAGGGTTTGAACAG 30 17 0 TCATTGCAGG 0.621869 -284 AAATCGGAAGCCAGCGCATGGACGCGCGCG 31 11 0 CCAGCGCATG 0.794306 -200 GAAAAGAGGAGCGCCGCCTGCGACGTAAGA 31 44 0 GCGCCGCCTG 0.947869 -167 GGTATATGCGGCACCGCATGCACACTTCCT 32 107 1 GCACCGCATG 0.979589 -194 CTGCGCGACACCATCGCATGCATTTCCCAT 32 179 0 CCATCGCATG 0.909608 -122 TTTATATTAGGCATTGCCTTTGGGGCACTT 33 56 1 GCATTGCCTT 0.152437 -68 ********** Masking position 6 Map Score: 27.8562 Number of sites scoring better than the average of aligned sites = 758 Number in coding regions = 699 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 46 Fraction of orfs with sites within 600 bp upstream = 0.00738837 Motif number 9 GGCGAGCCCTGCATACATACCCGAAATGCTC 1 46 0 GCATCATACC 0.947873 -60 GTGTCCTTTGGCATGAGCACCTTTCTTTCTT 2 23 1 GCATAGCACC 0.719271 -94 GTAACTGACACCACGCAGAACACGCTCGCGC 3 63 0 CCACCAGAAC 0.745882 -79 CCGCGCGTACGCATACGCATCTAAAATAACA 4 71 1 GCATCGCATC 0.640737 -99 ACTGCAACGTGCACACGTACTCCATCATATG 4 124 1 GCACCGTACT 0.790438 -46 ATTGTCCTGGGCACGCGGACTATGT 8 5 0 GCACCGGACT 0.82092 -67 ACTACCATTCGCATACAGAACACTTCTTTCT 11 167 1 GCATCAGAAC 0.866307 -21 AAGCCTTACGGCACTAGCACCTCGA 12 5 0 GCACAGCACC 0.772561 -96 AAGAGCACTTCCGCGCAGAACCGTCCTCATT 15 40 1 CCGCCAGAAC 0.499458 -195 AGGCAGCTGCGCGTACGCACCAGCAACCTGC 16 59 1 GCGTCGCACC 0.908762 -91 AGCGCAAGCGGCTCTGATACCTTGTGTTCCA 20 53 0 GCTCGATACC 0.329765 -50 TCAGTCACACCCATGCAGACCACATCACTGG 28 43 0 CCATCAGACC 0.883053 -207 AGCATTCGCACCAAGCTTTGAC 29 2 1 GCATCGCACC 0.966995 -299 CTGGTTGAGCGCATCCATACCTTCGAGCGTA 29 80 1 GCATCATACC 0.947873 -221 CACACGGACGCCTTGCGTACCCCAACCGCGA 30 251 0 CCTTCGTACC 0.554127 -50 ATCGCCTGCGCACGCGTACCTTTGGGGGTT 32 10 1 GCACCGTACC 0.969661 -291 ATGCGGCACCGCATGCACACTTCCTAGCGTT 32 112 1 GCATCACACT 0.722849 -189 TTCCCATACCGCACCCATAACTGATCCGAAG 32 155 0 GCACCATAAC 0.876061 -146 CTGCTGGAAGCCGTTCATAACCGAAAGGATG 33 97 0 CCGTCATAAC 0.382448 -27 CCTCGTTCCTGCACGGAGAACGA 34 80 1 GCACGAGAAC 0.537475 -13 **** ****** Masking position 9 Map Score: 13.6906 Number of sites scoring better than the average of aligned sites = 925 Number in coding regions = 849 Number in noncoding regions = 76 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 10 CACTTCCGTGCGCGAGCGTGTTCTGCGTGG 3 54 1 CGCGAGCGTG 0.506423 -88 CAGTTACATTCCTGAGGATCGGCGGAAGCA 3 87 1 CCTGAGGATC 0.416732 -55 TCCTATTTTCACTGAGGGTACAAATACCAC 4 35 1 ACTGAGGGTA 0.216409 -135 GCCTGCGCTCACTGCGCATGGCAATTACCG 13 43 1 ACTGCGCATG 0.953359 -57 TTGATGCGTTGCCGAGCGTGTCGCAGATCG 15 124 0 GCCGAGCGTG 0.733296 -111 GCATCAAAACACCGCGCGAGTTTTTTCAAC 15 147 1 ACCGCGCGAG 0.917588 -88 AGTTTTTTCAACTGCGCGTCATTCTCCACA 15 165 1 ACTGCGCGTC 0.924901 -70 CTCCACAATTACGGTGCGTGCCTCTACCGC 15 188 1 ACGGTGCGTG 0.610835 -47 CTTTTAGCATACTGAGCAGGCAGCTGCGCG 16 42 1 ACTGAGCAGG 0.790815 -108 GCACCAGCAACCTGCGCGACAAGGTGAACG 16 75 1 CCTGCGCGAC 0.775679 -75 AGCGGATTGAACGGAGCAAGAATCTCGTTC 16 100 0 ACGGAGCAAG 0.729877 -50 CAGGTGTAGGAATGCGCATGAGCGTTGAGT 18 17 0 AATGCGCATG 0.670334 -92 CACAAAAAAAACTGCGCGCGTGCATGCTCG 19 160 1 ACTGCGCGCG 0.938066 -103 GCCATCCACTCCCGAGCATGCACGCGCGCA 19 172 0 CCCGAGCATG 0.880354 -91 CAGCGTGGTTACCGATCGTGTCTCCATGTT 19 218 0 ACCGATCGTG 0.438768 -45 CACAAAACCGCCGGCGCAGGATCCGAAAGC 26 31 1 CCGGCGCAGG 0.610484 -73 GCGTATCAGCAATGAGCGTGTTGACAGTTC 29 106 1 AATGAGCGTG 0.761367 -195 AGCTACCGTCACTGAGCGAGACATCCACTT 29 247 1 ACTGAGCGAG 0.920488 -54 AGCCTGAAGGACCGAGGATGGAGAAAAACT 30 61 1 ACCGAGGATG 0.694727 -240 GTCGATGGTGACGGCGCATCCTTTCACGGT 30 158 1 ACGGCGCATC 0.742929 -143 AAATCGGAAGCCAGCGCATGGACGCGCGCG 31 11 0 CCAGCGCATG 0.619713 -200 TTGGATGAATACTGAGGGTGACCGGTCGTA 31 157 0 ACTGAGGGTG 0.868435 -54 ATCGCCTGCGCACGCGTACCTTTG 32 5 1 CCTGCGCACG 0.725428 -296 GGGGGTTTGGAATGAGCGCGGAAATAAAGA 32 34 1 AATGAGCGCG 0.520603 -267 ACGTGCACATCCTGCGCGACACCATCGCAT 32 190 0 CCTGCGCGAC 0.775679 -111 ********** Masking position 4 Map Score: 18.9255 Number of sites scoring better than the average of aligned sites = 1885 Number in coding regions = 1748 Number in noncoding regions = 137 Number of orfs with sites within 600 bp upstream = 122 Fraction of orfs with sites within 600 bp upstream = 0.0195952 Motif number 11 TCGATTTTTCTGTGGAAGAGAATA 3 128 1 TGTGGAAGAG 0.911571 -14 GCAGGAAGACTTTCAGCGAG 4 160 0 GCAGGAAGAC 0.755924 -10 CTCACCTCTCTCTTGAAGACAATATAGGCT 19 108 1 TCTTGAAGAC 0.869676 -155 TTGCATTGCCTGTGGATGCCAGTTCACGTG 24 34 0 TGTGGATGCC 0.721971 -74 GGCAATGCAAGGTGGAAGACGTATTAAGCA 24 54 1 GGTGGAAGAC 0.953352 -54 TGATTCCTTTTCTTGAAGAGATGTAACGTG 24 86 0 TCTTGAAGAG 0.818744 -22 CTGAGCTTACGCTGGAAGAAAATCAGTGCC 28 81 0 GCTGGAAGAA 0.75971 -169 TGCATATGAATCTTGAAGCGTTTATTTTAG 28 227 0 TCTTGAAGCG 0.858393 -23 TATGCAGCGCTGTGGCAGCCTGCACGGGGC 32 270 1 TGTGGCAGCC 0.793756 -31 AAAACCCTGCTGGAAGCCGTTCATAACC 33 106 0 GCTGGAAGCC 0.970336 -18 ATACAGACTTGGTTGAAGCGAACGCGCGCG 34 41 1 GGTTGAAGCG 0.872133 -52 ********** Masking position 5 Map Score: 4.50569 Number of sites scoring better than the average of aligned sites = 115 Number in coding regions = 106 Number in noncoding regions = 9 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 12 TGCGTTGTATCTCGCACCCGTCAAGCAGAA 3 26 0 CTCGCACCCG 0.946256 -116 CACGCTCGCGCACGGAAGTGCGTTGTATCT 3 44 0 CACGGAAGTG 0.481394 -98 CCACGCAGAACACGCTCGCGCACGGAAGTG 3 54 0 CACGCTCGCG 0.80005 -88 CCACCTGCCGCGCGTACGCATACGCATCTA 4 64 1 CGCGTACGCA 0.474996 -106 GACACTGCAACGTGCACACGTACTCCATCA 4 121 1 CGTGCACACG 0.573916 -49 GGCCGCACCCCACGCCAACGCGCACGACCT 5 35 1 CACGCCAACG 0.311947 -113 GACTTTTCTTCATGCACCCTGTGCCAAGTA 7 39 1 CATGCACCCT 0.587888 -25 TCTGCATGAGCACGGACGGCAGTTTTTGGG 11 35 1 CACGGACGGC 0.477277 -153 TCCGCAAACCCTGGCCCGCGGGGCCTTTGC 12 58 0 CTGGCCCGCG 0.330268 -43 GGGCGTGTACGCCGCTCCTCTGC 12 88 0 CGTGTACGCC 0.397987 -13 AGGGTGTACCCACGGAACCGAACACTGGCC 13 16 1 CACGGAACCG 0.820962 -84 GACGGTTCTGCGCGGAAGTGCTCTTTTTTC 15 35 0 CGCGGAAGTG 0.466699 -200 GCGGTAGAGGCACGCACCGTAATTGTGGAG 15 188 0 CACGCACCGT 0.449471 -47 CAGGCAGCTGCGCGTACGCACCAGCAACCT 16 58 1 CGCGTACGCA 0.474996 -92 CAGATGTTGTCGCGCAACCGACTAGATTTT 18 61 1 CGCGCAACCG 0.918816 -48 CACTCCCGAGCATGCACGCGCGCAGTTTTT 19 166 0 CATGCACGCG 0.939831 -97 GAACACTGCAAGCGCAAGCGGCTCTGATAC 20 64 0 AGCGCAAGCG 0.374414 -39 TAGGAACACCCTCGCACGTGAACTGGCATC 24 20 1 CTCGCACGTG 0.776326 -88 ACGTATTAAGCATGCACGTTACATCTCTTC 24 72 1 CATGCACGTT 0.224792 -36 GATGTTGCGACACGTAACCGGTTTGTGCTT 26 57 0 CACGTAACCG 0.674677 -47 AGCAAGAGCTGTTGCACCCGGCGCAG 26 88 1 GTTGCACCCG 0.157494 -16 TGAAGGAACACACGCACGGCCAAAGCTACC 29 224 1 CACGCACGGC 0.697961 -77 CGCCGTTGACCGTGCCACCGTTCACATTCG 30 99 0 CGTGCCACCG 0.434552 -202 AGCAAGGACACACGGACGCCTTGCGTACCC 30 260 0 CACGGACGCC 0.853362 -41 CACGCCAGCGGTAATCTGTC 30 291 0 CACGCCAGCG 0.852101 -10 GAAGCCAGCGCATGGACGCGCGCG 31 5 0 CATGGACGCG 0.852099 -206 CTTTTCATCCCTCGGACCCTTTCTGCGTCC 31 68 1 CTCGGACCCT 0.491562 -143 ATCGCCTGCGCACGCGTACCTTTGGG 32 7 1 TGCGCACGCG 0.62857 -294 GCAGGATGTGCACGTACCCACTGGTTTTGT 32 205 1 CACGTACCCA 0.448061 -96 AGGAAACAAACTCGCGCGCGTTCGCTTCAA 34 53 0 CTCGCGCGCG 0.685366 -40 ********** Masking position 4 Map Score: 14.6031 Number of sites scoring better than the average of aligned sites = 3520 Number in coding regions = 3306 Number in noncoding regions = 214 Number of orfs with sites within 600 bp upstream = 119 Fraction of orfs with sites within 600 bp upstream = 0.0191134 Motif number 13 CGGCGGAAGCACGGCCTTGTGCTCGATTTTT 3 106 1 ACGGCCTTGG 0.991131 -36 TCATATGAACACGGCTTTGGGGAAGGCAGGT 5 61 0 ACGGCTTTGG 0.98931 -87 TGTCCAGCATATGGCTTTGAGATACGACTTT 7 14 1 ATGGCTTTGG 0.923101 -50 ATGAACGTGAACCTCTTTGGGACTGTACTG 25 10 0 ACCTCTTTGG 0.835129 -27 GCGACACGTAACCGGTTTGTGCTTTCGGATC 26 50 0 ACCGGTTTGG 0.942786 -54 GCACGGCGTGACGGGCTTGCAGTGGAACCTG 27 63 0 ACGGGCTTGA 0.859489 -28 GACAGTTCCAACGGCCTTGAGAACACCCTTA 29 128 1 ACGGCCTTGG 0.991131 -173 ********* * Masking position 1 Map Score: 3.90517 Number of sites scoring better than the average of aligned sites = 47 Number in coding regions = 43 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 14 AAGCCATATGCTGGACAGTT 7 1 0 CTGGACAGTT 0.860253 -63 TCCGCGTGCCCAGGACAATCAATATGCGCG 8 17 1 CAGGACAATC 0.923658 -55 TTTCACCTACCAGGACATACTCGCGCAT 15 9 0 CAGGACATAC 0.955275 -226 CGTCCTCATTCTGGACAAACTCATCCTTCA 15 61 1 CTGGACAAAC 0.886611 -174 GTTATTTTTACAGGACAGATGTTGTCGCGC 18 46 1 CAGGACAGAT 0.935308 -63 CAGTACAGTCCCAAAGAGGT 25 1 1 CAGTACAGTC 0.822833 -36 GTTTTACCACCAGCACATTCGCGTAGGCTG 27 27 1 CAGCACATTC 0.769206 -64 CGAGCCTTGACAGAACATACCCAAATACCG 30 224 0 CAGAACATAC 0.734781 -77 TGTGTCCTTGCTGGACAGATTACCGCTGGC 30 278 1 CTGGACAGAT 0.883505 -23 ********** Masking position 5 Map Score: 2.66936 Number of sites scoring better than the average of aligned sites = 74 Number in coding regions = 70 Number in noncoding regions = 4 Number of orfs with sites within 600 bp upstream = 2 Fraction of orfs with sites within 600 bp upstream = 0.000321234 Motif number 15 GAATGTAACTGACACCACGCAGAACACGCT 3 68 0 GACACCACGC 0.955327 -74 CGCACCCCACGCCAACGCGCACGACCTGCC 5 38 1 GCCAACGCGC 0.949002 -110 GCCTCTCAGGCACCGCGCACAACCAGCG 9 9 1 GGCACCGCGC 0.876144 -38 CAGAGGAGCGGCGTACACGCCC 12 89 1 GCGTACACGC 0.810728 -12 TTCCCCTGCGGTGAACAAGC 17 1 0 GTGAACAAGC 0.715575 -106 GACACGATCGGTAACCACGCTGTCCCATGG 19 226 1 GTAACCACGC 0.927307 -37 TGCAAAACGAGTGAACACGCTTCGGGAATA 22 46 1 GTGAACACGC 0.974487 -119 CGTTGGAACTGTCAACACGCTCATTGCTGA 29 111 0 GTCAACACGC 0.962763 -190 CAACGGCCTTGAGAACACCCTTACCGTTAT 29 136 1 GAGAACACCC 0.751651 -165 GCCCCTGAAGGAACACACGCACGGCCAAAG 29 219 1 GAACACACGC 0.635614 -82 AGGCTGCGGAAAGACCACGCTTTTGCGTAT 30 36 0 AAGACCACGC 0.675416 -265 GTGACCGGTCGTAACCGCGCCAATGCGTTG 31 140 0 GTAACCGCGC 0.903541 -71 CTTGGTTGAAGCGAACGCGCGCGAGTTTGT 34 48 1 GCGAACGCGC 0.964791 -45 ********** Masking position 6 Map Score: 10.6774 Number of sites scoring better than the average of aligned sites = 398 Number in coding regions = 374 Number in noncoding regions = 24 Number of orfs with sites within 600 bp upstream = 26 Fraction of orfs with sites within 600 bp upstream = 0.00417604