AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i175_bsub_mtub_300.orf -o175_bsub_mtub_300.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.55 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.55 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 pgsA 300 phosphatidylglycerophosphate synthase #2 recA 172 multifunctional SOS repair regulator #3 pbpX 167 penicillin-binding protein #4 ymdA 276 similar to hypothetical proteins #5 ymdB 68 similar to hypothetical proteins #6 spoVS 199 spoVS #7 tdh 265 threonine 3-dehydrogenase #8 bioW 251 6-carboxyhexanoate-CoA ligase #9 ytaP 217 ytaP #10 bioA 247 bioA #11 bioB 300 bioB Motif number 1 ACAAACCATAAAGATTGTAAATAAAAAGGAAGAAAA 1 216 1 AATGTTAAAA 0.688525 -85 AATGATACAAAAGGCTGAGTGAAAAACTCAGCTTTT 3 28 1 AATGAAAAAA 0.688526 -140 TATTTTTATCATTTTTTTGCAAAATACAAAAAAGCT 3 57 0 ATTTTAAATA 0.907506 -111 AAGCCCTAAAAAAGTTGTCAAAAAAAGCAATATTTT 3 87 0 AATGTAAAAA 0.962735 -81 TCGTCTAACAAAACGTGTGCAAAATGGAATTTATTT 3 126 1 AATGTAAATG 0.766152 -42 ACTTCATTGTAAATGTGTCGGAAATACTTGTCAAGC 4 85 0 AATGTAAATA 0.962735 -192 ATGGTTTAACAATCATGTTAAAAAAACAAATGTTAC 4 122 0 AATGTAAAAA 0.962734 -155 TTTCTTTTTAATATTTTTATAAAATAACCATATGTT 6 14 0 ATTTTAAATA 0.907685 -186 CATCCCCACAATGCTTTTCAAAAATAGCGGGCTACC 6 94 0 ATTTTAAATA 0.907689 -106 ATATTCGCTCATTTATGTGCTAAAAATACTATCGGG 7 83 0 ATTGTAAAAA 0.940517 -183 AAATGAGCTAAAACGTTTCAAAAAAAATTTCCGCCC 7 129 1 AATTTAAAAA 0.941404 -137 CAGATGAGTTAATATTTTACTAAATAGATGAGAGGG 9 17 0 AATTTAAATA 0.941401 -201 ATATGATAATATCAATTTATCAAAAACAGATGAGTT 9 43 0 ATTTTAAAAA 0.907689 -175 CGGTTACAATAATTGTTTTCGAAATATTCCATAATA 9 88 1 AATTTAAATA 0.941404 -130 ATCATTTACTAAATATTTAGTAAATATTATGGAATA 9 112 0 AATTTAAATA 0.941404 -106 AAATGATGTGATTTATGTTGGAAAAATAAAGGGGAA 9 141 1 ATTGTAAAAA 0.940517 -77 ** *** ***** Masking position 6 Map Score: 19.2222 Number of sites scoring better than the average of aligned sites = 387 Number in coding regions = 245 Number in noncoding regions = 142 Number of orfs with sites within 600 bp upstream = 149 Fraction of orfs with sites within 600 bp upstream = 0.0239319 Motif number 2 ACACCCCCACGGGTACTCACGCTGCGGATAGCGCCCT 10 55 0 GGGCGCTGGG 0.972068 -193 AGTGTCTTCAGGCTGATTCGGCGGTGCCATGCATGCA 10 146 1 GGCAGCGGGC 0.985176 -102 TGCATGCATGCTCCCCGATGGCAGAGGTTTTGGCGAC 10 175 1 CTCCGCAGGG 0.983769 -73 CACTAAACTGCGGTTCACCGGCGGGGGTTATGCCCGG 11 32 0 CGGCGCGGGG 0.996885 -269 CGACCCGCCAGGCATCCCACACAGCGGCCCAGACGCC 11 99 0 GGCCACAGGG 0.958614 -202 GCGGAGGTCACGGATCGTTGGCAGCGGCCCAGCTATC 11 148 0 CGGCGCAGGG 0.992731 -153 CGGGGACAAACGCGACGTGGGCGGAGGTCACGGATCG 11 168 0 CGCCGCGGGG 0.998784 -133 ACGGTGTTCAGGCTACGGTAGCGGTGCGCACGGGGAC 11 198 0 GGCCGCGGGC 0.996287 -103 TCATTCAGGCCGCCGAGCAGGCGGCGGATGGGTTCCG 11 236 1 CGCAGCGGGG 0.99511 -65 CCTTCGTCATCTCCGCACGCGCGGAACCCATCCGCCG 11 257 0 CTCCGCGGAC 0.813388 -44 GTGCGGAGATGACGAAGGATGCAGGGGAGTACCTG 11 276 1 GACAGCAGGG 0.877129 -25 *** * **** ** Masking position 12 Map Score: 15.2552 Number of sites scoring better than the average of aligned sites = 368 Number in coding regions = 339 Number in noncoding regions = 29 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 3 ATCTGAAAATAAAAATCAACGGTAAGGTTCTTTC 1 152 1 AAAAAAAGGA 0.982217 -149 CTCGATCCGAAAAAAGTGATGGCACAAACCATAA 1 193 1 AAAAAGAGGA 0.986688 -108 TTTGCCAAGAAAAAAGCGAACGCATATTCGGATT 2 93 0 AAAAAGACGA 0.94642 -80 ATCATGTTAAAAAAACAAATGTTACAACTTCATT 4 113 0 AAAAAAAGTA 0.894839 -164 GTTGTTGCTTAAAAAGTGTCGGCATGTACATTGT 4 225 0 AAAAAGTGGA 0.921165 -52 CTTGCCGTCAAAAAAATAAAGTGATGCTTAGCGC 5 17 0 AAAAAAAGTA 0.894839 -52 TGAATATAGTAAAAATGGAAGGTAGCCCGCTATT 6 74 1 AAAAAGAGGA 0.986688 -126 TATCCATTGTAAAACTAAGGGGGAGCAGAA 6 180 1 AAAACAGGGA 0.817268 -20 ATCTGTCTTGAAAAATGGGCGGAAATTTTTTTTG 7 147 0 AAAAAGGGGA 0.969578 -119 CTGTAAAAAGAAATCGAAAAAGACCGTT 8 5 1 AAAAAAACGA 0.92939 -247 TTTATGTTGGAAAAATAAAGGGGAACCCAGATCT 9 152 1 AAAAAAAGGA 0.982217 -66 ***** ** ** * Masking position 4 Map Score: 12.9965 Number of sites scoring better than the average of aligned sites = 312 Number in coding regions = 238 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 71 Fraction of orfs with sites within 600 bp upstream = 0.0114038 Motif number 4 TTGTAAATAAAAAGGAAGAAAAGTCATCTTAAT 1 230 1 AAAGGAAAAG 0.898415 -71 GTGGTAACATAAAGGAGGAAAAAATAGA 2 155 1 AAAGGAAAAA 0.974262 -18 AATAAGTTTCAAATGATACAAAAGGCTGAGTGA 3 17 1 AAATGAAAAA 0.972174 -151 TTTTGCAAAAAAATGATAAAAATATTGCTTTTT 3 69 1 AAATGAAAAT 0.846336 -99 TTTCAAGAAGAAAGGATTTACAAA 5 55 1 AAAGGAACAA 0.942116 -14 ATATCACAATAAATGAAAAACAACCTGTTTGCA 7 45 0 AAATGAACAA 0.937589 -221 TTTAGCACATAAATGAGCGAATATACAAAATCA 7 95 1 AAATGAAATA 0.846336 -171 ACAAAATCAGAAATGAGCTAAAACGTTTCAAAA 7 119 1 AAATGAAAAA 0.972174 -147 CAGTTGGTTAAAAGGAAACAAAAAGACCGTTTT 8 46 0 AAAGGAAAAA 0.974262 -206 AAAGGGCGAGAAATGATGCAAGAAGAAACTTTT 8 205 1 AAATGAAAGA 0.890866 -47 ****** **** Masking position 6 Map Score: 9.84827 Number of sites scoring better than the average of aligned sites = 219 Number in coding regions = 161 Number in noncoding regions = 58 Number of orfs with sites within 600 bp upstream = 68 Fraction of orfs with sites within 600 bp upstream = 0.0109219 Motif number 5 TTTTCAGCGTTCCTTCTTTTAAAGAGCTGCCAC 1 50 0 TCCTTCTAAA 0.973902 -251 CAGCACATTATCCTCCTAAGAAAACATGATTTC 2 17 1 TCCTCCTAAA 0.972143 -156 GCGTTCGCTTTTTTCTTGGCAAATCCCTTCAAA 2 104 1 TTTTCTTAAA 0.529164 -69 ATTTTTATCATTTTTTTGCAAAATACAAAAAAG 3 59 0 TTTTTTTAAA 0.606652 -109 TAGGGCTTTATTCGTCTAACAAAACGTGTGCAA 3 115 1 TTCGTCTAAA 0.924057 -53 TCATTTTTTCCTCCCAAAATAAATTCCA 3 150 0 TTTTCCTAAA 0.905939 -18 TGTAAATCCTTTCTTCTTGAAAATTCCTTGCCG 5 44 0 TTCTTCTAAA 0.951362 -25 GACAAAAGTATCTGTCTTGAAAAATGGGCGGAA 7 157 0 TCTGTCTAAA 0.924609 -109 GATACTTTTGTCCTTCTGGAAAAGACAGTTCTG 7 178 1 TCCTTCTAAA 0.973709 -88 GTACAATCCTCCTTGAAAAATTCTTGTTA 7 247 0 TCCTCCTAAA 0.97214 -19 GGAACCCAGATCTGTCTCGTAAATGTGAAGTAA 9 173 1 TCTGTCTAAA 0.924743 -45 ******* *** Masking position 11 Map Score: 9.93736 Number of sites scoring better than the average of aligned sites = 348 Number in coding regions = 281 Number in noncoding regions = 67 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 6 AAGTTGATATCCGCACCGGATATGCACCTA 1 122 1 CCGCACCGGA 0.814308 -179 GCTGCGGATAGCGCCCTGGGACGTGGTATG 10 42 0 GCGCCCTGGG 0.818829 -206 GAGCGGACACCCCCACGGGTACTCACGCTG 10 68 0 CCCCACGGGT 0.838172 -180 TCTAGACGAGCCCGACGAGCGGACACCCCC 10 84 0 CCCGACGAGC 0.94324 -164 CTCGTCTAGAGCCGACCGGGATTCGGTGCC 10 104 1 GCCGACCGGG 0.95093 -144 CAAAACCTCTGCCATCGGGGAGCATGCATG 10 177 0 GCCATCGGGG 0.726451 -71 GCCAACCGGCAATCTGACCA 11 1 1 GCCAACCGGC 0.925684 -300 GGCAATCTGACCAACCGGGCATAACCCCCG 11 18 1 CCAACCGGGC 0.740946 -283 GGGCATAACCCCCGCCGGTGAACCGCAGTT 11 34 1 CCCGCCGGTG 0.808456 -267 ATCCCACACAGCGGCCCAGACGCCGAATCG 11 93 0 GCGGCCCAGA 0.742272 -208 TCGCACTCGACCCGCCAGGCATCCCACACA 11 113 0 CCCGCCAGGC 0.909792 -188 ATCGTTGGCAGCGGCCCAGCTATCAGCACT 11 142 0 GCGGCCCAGC 0.935942 -159 CGGTAGCGGTGCGCACGGGGACAAACGCGA 11 190 0 GCGCACGGGG 0.963794 -111 TTTCATTCAGGCCGCCGAGCAGGCGGCGGA 11 234 1 GCCGCCGAGC 0.967892 -67 TTCGTCATCTCCGCACGCGCGGAACCCATC 11 262 0 CCGCACGCGC 0.802706 -39 ********** Masking position 6 Map Score: 8.03361 Number of sites scoring better than the average of aligned sites = 1296 Number in coding regions = 1178 Number in noncoding regions = 118 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 7 GACGTGAAGAAAAGTCATCTGGTAATTAAGATGA 1 253 0 AAAACTGGTA 0.635148 -48 GCTGAGTGAAAAACTCAGCTTTTTTGTATTTTGC 3 41 1 AAAACTTTTT 0.934093 -127 AAAATGATAAAAATATTGCTTTTTTTGACAACTT 3 78 1 AAATCTTTTT 0.606806 -90 AATGCTTTTCAAAAATAGCGGGCTACCTTCCATT 6 87 0 AAAACGGGCT 0.837351 -113 AAACAAATAAAGCATTCTCAACCTGTTT 7 5 1 AAAACATTCT 0.626813 -261 CAATAAATGAAAAACAACCTGTTTGCATTACGCA 7 38 0 AAAACTGTTT 0.960119 -228 CCAGAAGGACAAAAGTATCTGTCTTGAAAAATGG 7 163 0 AAAACTGTCT 0.95078 -103 GAATAAGCGTAAACAGAACTGTCTTTTCCAGAAG 7 190 0 AAAACTGTCT 0.728424 -76 AAAGAAATCGAAAAAGACCGTTTTGTGTGAAAAC 8 17 1 AAAACGTTTT 0.731283 -235 AAAAGGAAACAAAAAGACCGTTTTCACACAAAAC 8 36 0 AAAACGTTTT 0.731283 -216 AAATGATGCAAGAAGAAACTTTTTATAGTGTCAG 8 215 1 AGAACTTTTT 0.695517 -37 AGTAAAATATTAACTCATCTGTTTTTGATAAATT 9 32 1 TAAACTGTTT 0.732655 -186 TTATCATATAAAAGTAAGCGGTTACAATAATTGT 9 70 1 AAAACGGTTA 0.819266 -148 *** * ****** Masking position 3 Map Score: 4.87281 Number of sites scoring better than the average of aligned sites = 518 Number in coding regions = 393 Number in noncoding regions = 125 Number of orfs with sites within 600 bp upstream = 125 Fraction of orfs with sites within 600 bp upstream = 0.0200771 Motif number 8 TTCATATGAACTCGATCCGAAAAAAGTGAT 1 183 1 CTCGATCCGA 0.923685 -118 GTCTTCTTTTCACGTGCCGAATGCAATTCA 4 30 0 CACGTGCCGA 0.904823 -247 CTAGACAATGTACATGCCGACACTTTTTAA 4 221 1 TACATGCCGA 0.788463 -56 CATATCATGGTACAATCCGAATATAACAAG 7 224 1 TACAATCCGA 0.627858 -42 TGAAGCCCTCATTCTGACACTATAAAA 8 235 0 CTCATTCTGA 0.669372 -17 CCCACGGGTACTCACGCTGCGGATAGCGCC 10 57 0 CTCACGCTGC 0.775908 -191 TCGGGCTCGTCTAGAGCCGACCGGGATTCG 10 99 1 CTAGAGCCGA 0.754775 -149 CCTGAAGACACTCAGCCCGATGCTGGCACC 10 128 0 CTCAGCCCGA 0.939641 -120 GCTGAGTGTCTTCAGGCTGATTCGGCGGTG 10 142 1 TTCAGGCTGA 0.784441 -106 ATCCCGCAACCTCAAGCCGCTCACTAAACT 11 60 0 CTCAAGCCGC 0.977219 -241 AGCACTCGCACTCGACCCGCCAGGCATCCC 11 118 0 CTCGACCCGC 0.914884 -183 CACCGTTTCATTCAGGCCGCCGAGCAGGCG 11 229 1 TTCAGGCCGC 0.931326 -72 ********** Masking position 7 Map Score: 4.3537 Number of sites scoring better than the average of aligned sites = 1065 Number in coding regions = 1001 Number in noncoding regions = 64 Number of orfs with sites within 600 bp upstream = 57 Fraction of orfs with sites within 600 bp upstream = 0.00915516 Motif number 9 TAACTGATCAGAAACAAGTTGATATCCGCA 1 107 1 GAAACAAGTT 0.867727 -194 CAAATCCCTTCAAACAGGGTATAGTATATG 2 123 1 CAAACAGGGT 0.959302 -50 AATGGTTTAACAATCATGTTAAAAAAACAA 4 129 0 CAATCATGTT 0.831411 -148 TTTTAAGCAACAACCAAGTTCATAGCAAGA 4 245 1 CAACCAAGTT 0.927999 -32 TTGCATTACGCAAACAGGTTGAGAATGCTT 7 20 0 CAAACAGGTT 0.984724 -246 TTGCGTAATGCAAACAGGTTGTTTTTCATT 7 37 1 CAAACAGGTT 0.984724 -229 ********** Masking position 6 Map Score: 2.80534 Number of sites scoring better than the average of aligned sites = 94 Number in coding regions = 84 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 12 Fraction of orfs with sites within 600 bp upstream = 0.0019274 Motif number 10 GAAACAAGTTGATATCCGCACCGGATATGC 1 117 1 GATATCCGCA 0.957929 -184 TATCCAAAAAGCCATCCCCACAATGCTTTT 6 112 0 GCCATCCCCA 0.978399 -88 CCCATCACCCTTCCTTATTC 9 208 0 CCCATCACCC 0.791291 -10 GTCCCAGGGCGCTATCCGCAGCGTGAGTAC 10 50 1 GCTATCCGCA 0.978135 -198 CCGACGAGCGGACACCCCCACGGGTACTCA 10 73 0 GACACCCCCA 0.84342 -175 CAGCGGCCCAGCTATCAGCACTCGCACTCG 11 134 0 GCTATCAGCA 0.898053 -167 AACGATCCGTGACCTCCGCCCACGTCGCGT 11 166 1 GACCTCCGCC 0.94747 -135 ACGCGCGGAACCCATCCGCCGCCTGCTCGG 11 248 0 CCCATCCGCC 0.973932 -53 CATCCTTCGTCATCTCCGCACGCGCGGAAC 11 267 0 CATCTCCGCA 0.851538 -34 ********** Masking position 6 Map Score: 5.60953 Number of sites scoring better than the average of aligned sites = 675 Number in coding regions = 621 Number in noncoding regions = 54 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 11 GCAGCTCTTTAAAAGAAGGAACGCTGAAAA 1 53 1 AAAAGAAGGA 0.944589 -248 GAACGCTGAAAAAAGACGAAACCTATAAAA 1 71 1 AAAAGACGAA 0.944589 -230 TTGTAAATAAAAAGGAAGAAAAGTCATCTT 1 230 1 AAAGGAAGAA 0.89069 -71 ACGCCAAGAAAAAATCCGAATATGCGTTCG 2 81 1 AAAATCCGAA 0.734664 -92 CAATTCATCCAAAAGAAGATCGCCAA 4 7 0 AAAAGAAGAT 0.862066 -270 TCGGCACGTGAAAAGAAGACTGGCCTGCAA 4 40 1 AAAAGAAGAC 0.902563 -237 TATTAAAAAGAAAAGCAGGAATATAGCAAC 6 37 1 AAAAGCAGGA 0.933604 -163 GCGAATATACAAAATCAGAAATGAGCTAAA 7 111 1 AAAATCAGAA 0.84995 -155 TGTTTCTGTCAATAGAAGAAAGGATCGATT 8 84 0 AATAGAAGAA 0.8461 -168 ********** Masking position 2 Map Score: 3.0579 Number of sites scoring better than the average of aligned sites = 833 Number in coding regions = 711 Number in noncoding regions = 122 Number of orfs with sites within 600 bp upstream = 132 Fraction of orfs with sites within 600 bp upstream = 0.0212014 Motif number 12 CTCAAATCCAGGAGCTGTCTGATGCCTT 1 9 0 GGAGCTGTCT 0.92102 -292 AAGGACAAAAGTATCTGTCTTGAAAAATGG 7 163 0 GTATCTGTCT 0.860356 -103 AAGCGTAAACAGAACTGTCTTTTCCAGAAG 7 190 0 AGAACTGTCT 0.951694 -76 GTTTTCACACAAAACGGTCTTTTTCGATTT 8 21 0 AAAACGGTCT 0.951951 -231 GTTTTGTGTGAAAACGGTCTTTTTGTTTCC 8 36 1 AAAACGGTCT 0.951951 -216 AGGGGAACCCAGATCTGTCTCGTAAATGTG 9 170 1 AGATCTGTCT 0.896557 -48 GCCCATCCCAGTAACGGTCGCCAAAACCTC 10 198 0 GTAACGGTCG 0.856454 -50 CGGCCTGAATGAAACGGTGTTCAGGCTACG 11 218 0 GAAACGGTGT 0.841956 -83 ********** Masking position 3 Map Score: 1.48863 Number of sites scoring better than the average of aligned sites = 210 Number in coding regions = 188 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 13 CTTTTTTCAGCGTTCCTTCTTTTAAAGAGC 1 56 0 CGTTCCTTCT 0.963454 -245 CGTTTGCAGGCCAGTCTTCTTTTCACGTGC 4 43 0 CCAGTCTTCT 0.845874 -234 TTTGTAAATCCTTTCTTCTTGAAAATTCC 5 50 0 CCTTTCTTCT 0.983829 -19 ATAAATCGATCCTTTCTTCTATTGACAGAA 8 81 1 CCTTTCTTCT 0.983829 -171 CACTATAAAAAGTTTCTTCTTGCATCATTT 8 215 0 AGTTTCTTCT 0.831066 -37 CCCATCACCCTTCCTTATTCGCTTACTT 9 200 0 CCTTCCTTAT 0.886403 -18 ********** Masking position 7 Map Score: 1.70601 Number of sites scoring better than the average of aligned sites = 162 Number in coding regions = 142 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 14 TTCCTATCAAAATATCATAATGTATCAGAG 2 49 0 AATATCATAA 0.859188 -124 GAAAAGCAGGAATATAGCAACTCCTTAGTG 6 46 1 AATATAGCAA 0.947527 -154 CTCCTTAGTGAATATAGTAAAAATGGAAGG 6 66 1 AATATAGTAA 0.859188 -134 ATCGGGAGAAAATATCACAATAAATGAAAA 7 59 0 AATATCACAA 0.947527 -207 GTACAATCCGAATATAACAAGAATTTTTCA 7 233 1 AATATAACAA 0.919896 -33 AAATACTGCCAATATCGCTACGGTACATAC 10 17 1 AATATCGCTA 0.875077 -231 ********** Masking position 5 Map Score: 0.652134 Number of sites scoring better than the average of aligned sites = 70 Number in coding regions = 53 Number in noncoding regions = 17 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 15 GCTGAAAAAAGACGAAACCTATAAAAAAGAC 1 75 1 GACGAACCTA 0.873166 -226 GATTTGCCAAGAAAAAAGCGAACGCATATTC 2 98 0 GAAAAAGCGA 0.884549 -75 ATTTAAACTTGACAAGGGCGATGAACACACT 4 156 1 GACAAGGCGA 0.990318 -121 CAATTTAGGTGAGAAGCGCTACACGTTCTTC 8 163 1 GAGAAGGCTA 0.864827 -89 GTCGGCTCTAGACGAGCCCGACGAGCGGACA 10 89 0 GACGAGCCGA 0.981175 -159 TGCCTGGCGGGTCGAGTGCGAGTGCTGATAG 11 122 1 GTCGAGGCGA 0.962468 -179 TGCGCACGGGGACAAACGCGACGTGGGCGGA 11 180 0 GACAAAGCGA 0.980208 -121 ****** **** Masking position 5 Map Score: 1.6621 Number of sites scoring better than the average of aligned sites = 188 Number in coding regions = 178 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555