AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i199_bsub_mtub_100.orf -o199_bsub_mtub_100.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.55 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.55 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: rplB 31 ribosomal protein L2 (BL2) rpsN 22 ribosomal protein S14 rplR 32 ribosomal protein L18 Input sequences: #1 cysE 300 serine acetyltransferase #2 sigH 62 RNA polymerase sigma-30 factor (sigma-H) #3 rpmG 92 ribosomal protein L33 #4 nusG 178 transcription antitermination factor #5 rplK 167 ribosomal protein L11 (BL11) #6 rplA 93 ribosomal protein L1 (BL1) #7 rplJ 251 ribosomal protein L10 (BL5) #8 rplL 46 ribosomal protein L12 (BL9) #9 rpoB 245 RNA polymerase (beta subunit) #10 rpoC 61 RNA polymerase (beta' subunit) #11 rpsL 113 ribosomal protein S12 (BS12) #12 rpsG 41 ribosomal protein S7 (BS7) #13 fus 53 elongation factor G #14 tufA 119 elongation factor Tu #15 rpsJ 235 ribosomal protein S10 (BS13) #16 rplC 39 ribosomal protein L3 (BL3) #17 rplD 27 ribosomal protein L4 #18 rpsS 57 ribosomal protein S19 (BS19) #19 rpsQ 22 ribosomal protein S17 (BS16) #20 rplN 40 ribosomal protein L14 #21 rplX 37 ribosomal protein L24 (BL23) (histone-like protein HPB12) #22 rplE 26 ribosomal protein L5 (BL6) #23 rpsH 31 ribosomal protein S8 (BS8) #24 rplF 29 ribosomal protein L6 (BL8) #25 rpsE 24 ribosomal protein S5 #26 rplO 30 ribosomal protein L15 #27 adk 54 adenylate kinase #28 infA 300 initiation factor IF-I #29 rpmJ 33 ribosomal protein L36 (ribosomal protein B) #30 rpsM 22 ribosomal protein S13 #31 rpoA 176 RNA polymerase (alpha subunit) #32 rplQ 77 ribosomal protein L17 (BL15) #33 ybxA 127 alternate gene name: ybaD; similar to ABC transporter (ATP-binding protein) #34 yhzA 111 similar to ribosomal protein S14 #35 rpsD 294 ribosomal protein S4 (BS4) #36 yvaK 125 similar to carboxylesterase #37 dnaC 169 replicative DNA helicase #38 yybT 36 yybT #39 yybS 300 yybS #40 rpsR 37 ribosomal protein S18 #41 ssb 40 single-strand DNA-binding protein #42 rpsF 110 ribosomal protein S6 (BS9) #43 rpsF 218 rpsF #44 ssb 103 ssb #45 rpsR 41 rpsR #46 rplI 32 rplI #47 Rv0057 28 hypothetical protein Rv0057 #48 secE 300 secE #49 nusG 31 nusG #50 rplK 51 rplK #51 rplA 66 rplA #52 rplJ 300 rplJ #53 rplL 36 rplL #54 rpoB 300 rpoB #55 rpoC 44 rpoC #56 rpsL 248 rpsL #57 fusA 80 fusA #58 tuf 230 tuf #59 rpsJ 300 rpsJ #60 rplB 92 rplB #61 rpsS 40 rpsS #62 rplN 300 rplN #63 rpsH 163 rpsH #64 rplF 23 rplF #65 secY 160 secY #66 Rv1284 206 hypothetical protein Rv1284 #67 cysD 93 cysD #68 modA 161 modA #69 rpmB2 112 rpmB2 #70 truA 67 truA #71 rplQ 31 rplQ #72 rpoA 151 rpoA #73 rpsM 215 rpsM #74 rpmJ 32 rpmJ #75 infA 253 infA Motif number 1 CTAAAACCAAATGCGGGGAGGGAAGGACTGG 4 143 1 AGCGGGGAGG 0.870373 -36 CACATCACGGACTTAAGGAGGTGTGTCTC 5 149 1 ATTAAGGAGG 0.908927 -19 CGCTATAACCACATAAGGAGGAAATTTTAAA 6 73 1 AATAAGGAGG 0.951308 -21 AGCCTCCATGAGACATGGAGGCTGTATATAC 7 152 0 AACATGGAGG 0.761861 -100 TAAATTAAAACAAAATGGAGGAATTACAA 8 28 1 CAAATGGAGG 0.93589 -19 ATCCGAAGATAAAAAGGGAGGTAGGCCCC 10 43 1 AAAAGGGAGG 0.976198 -19 ATAAAACGTAATGAAGGGAGGAAAAATTC 11 95 1 AGAAGGGAGG 0.986117 -19 CGCATAATTAATGAAGGGAGGATATTCAG 12 23 1 AGAAGGGAGG 0.986117 -19 AATTAAAAGCTCTTAAGGAGGATTTTAGA 14 101 1 TTTAAGGAGG 0.732937 -19 GTGATGTAGGCGAAAAGGAGGGAAAATA 15 218 1 CAAAAGGAGG 0.982406 -18 TTCTCTTAGGAAAGGAGGAAATTGATT 17 8 1 AGAAAGGAGG 0.988607 -20 TAGTGCAATCACGAAGGGAGGTTCCAAA 18 40 1 AGAAGGGAGG 0.986117 -18 TCACTGAGGGGAGGTCGTGAGC 19 4 1 CGAGGGGAGG 0.968393 -19 AATTCTTTTTCCGAAGGGAGGTAACAAATA 20 21 1 CGAAGGGAGG 0.987525 -20 TATTAAAAGGAAGGGAGGTCTATCTC 22 8 1 AGAAGGGAGG 0.986117 -19 TCCCCAAGAAAGGGAAGGAGGTAATTATATA 23 11 1 AGGAAGGAGG 0.971815 -21 GAAGTTTAACATGAATGGAGGTGTTTGGT 24 11 1 AGAATGGAGG 0.957781 -19 TAAAAGAAGGAGGGACACATGAT 25 3 1 AAGAAGGAGG 0.952173 -22 CACTCCGGAAACTGAAGGAGGTTGGAAACAC 29 13 1 ATGAAGGAGG 0.910474 -21 TTTATAAGGAGGTGCCCAGAGA 30 2 1 TATAAGGAGG 0.843076 -21 GTTTCGACGTTTTGAAGGAGGGTTTTAAGTA 31 156 1 TTGAAGGAGG 0.736606 -21 ACAGCATTCCAATAAAGGAGGGGACATCAC 32 58 1 ATAAAGGAGG 0.962396 -20 AGAGCATTAGCTGAGAGGAGGCCGGTTTTCC 33 107 1 CGAGAGGAGG 0.973977 -21 CAATTTCGATTTAAAGGGAGGCTATGTGAC 34 92 1 TAAAGGGAGG 0.918553 -20 ACGGTGAAGCAATAATGGAGGAATGGTTGAC 35 61 1 ATAATGGAGG 0.869982 -234 CAAAAATAAAACCAAAGGAGGAGTCACATT 35 275 1 ACAAAGGAGG 0.871757 -20 TGCAATAAAACATAAGGGAGGAATGAAAG 37 9 0 CTAAGGGAGG 0.95893 -161 GTAGAAATGGTAGAATGGAGGTTGGAGATTT 37 125 1 TGAATGGAGG 0.861847 -45 TAAAATGAAAAAGAAAGGAGGGAA 40 24 1 AGAAAGGAGG 0.988607 -14 GCCGCTTAGTCCAAAAGGAGGTGCAAACAG 42 91 1 CAAAAGGAGG 0.982406 -20 ATCACCGAACGGAGGGCGCGCGTGT 48 5 1 CGAACGGAGG 0.944485 -296 CAGAGCGAAGCGATGAGGAGGAGCAGGGCAA 60 24 1 CATGAGGAGG 0.893924 -69 GGGCCGCAAGCGATGAGGAGGAGTAGCGCTC 63 88 1 CATGAGGAGG 0.893924 -76 AGAGCGCAAGCGATGAGGAGGAGTAGCGCTC 63 142 1 CATGAGGAGG 0.893924 -22 TCAGCGTTGAACACGAGGAGGTC 68 3 0 AACGAGGAGG 0.825663 -159 AAACTGTTATCGATAAGGAGGACG 69 4 0 CATAAGGAGG 0.95609 -109 TCATTCACGCCCGGACGGAGGCCGGGCCCCA 73 123 1 CGGACGGAGG 0.871142 -93 * ********* Masking position 9 Map Score: 58.1524 Number of sites scoring better than the average of aligned sites = 379 Number in coding regions = 153 Number in noncoding regions = 226 Number of orfs with sites within 600 bp upstream = 256 Fraction of orfs with sites within 600 bp upstream = 0.0411179 Motif number 2 TATTCAAAGGCGGCCGCCGCCGTTACAGGCT 1 146 1 CGGCCGCGCC 0.987515 -155 TCCGATCCCCCCGGCGCACGTAGATAGA 2 45 0 CCCCCGCGCA 0.930606 -18 AGTTATCATAGGCTTGCCGCCTATTTTTTGA 4 95 1 GGCTTGCGCC 0.669953 -84 TCCAGTCCTTCCCTCCCCGCATTTGGTTTTA 4 144 0 CCCTCCCGCA 0.719119 -35 AATGGGCGGCTTCAGGCCGTCTGTTTTA 34 8 1 GGCTTCGGCC 0.428583 -104 AGTGTCGCGAACGGCGAGGCCTATCGCGAAC 43 14 0 ACGGCGGGCC 0.929369 -205 GACACGCCGCGGATCGTCGCACCGGGTTAAG 43 59 1 GGATCGCGCA 0.756169 -160 TGCCGACCAGGCACCACCGCACTCCAGGCTT 43 87 0 GCACCACGCA 0.630232 -132 TGCCACGGATCGACCGTGGCCGCACACGACC 43 177 1 CGACCGGGCC 0.971475 -42 GAACGGAGGGCGCGCGTGTCATGTGAGCCCC 48 17 1 CGCGCGGTCA 0.555849 -284 AGACCAGACCAGGCCCTGGCCAACCCACTAC 48 51 0 AGGCCCGGCC 0.836133 -250 GACGACGATGCAGGCACGGCCTGAAGAGGAG 48 187 1 CAGGCAGGCC 0.574021 -114 CTTCCAGTGTCCACCATGGCACATACCTATG 48 224 0 CCACCAGGCA 0.658222 -77 CCCAGCAGGGCAGGCCACACAG 50 2 1 CCAGCAGGCA 0.765322 -50 GGCCCTCCCACGGGTAGGGCC 51 1 0 CGGGTAGGCC 0.735927 -66 GAGTGTGAATCCCGCGACGCCGCACCGG 52 8 0 CCCGCGCGCC 0.946405 -293 TTTGGCTGACCGGACCGGGCCAGGCTATTGT 52 57 1 CGGACCGGCC 0.681828 -244 AGCATCCCGGCGACCCACGCAGGAGGACGAG 52 143 1 CGACCCCGCA 0.816287 -158 ACTAGGCCGGCGCGCGCCGGCGGTGCTGCCT 52 172 0 CGCGCGCGGC 0.909341 -129 ACGCAGGAAGCGGTCGGGGCGTGGAACTAGG 52 197 0 CGGTCGGGCG 0.815562 -104 AACGACGAACGCCCCGACGCAGGAAGCGGTC 52 213 0 GCCCCGCGCA 0.914387 -88 GCGGCGAACGGGCCCGTGGGCACCGCTCCTC 54 237 1 GGCCCGGGGC 0.69995 -64 CCCTGCTTCGGCCGCAACGCCCGCTTTGACC 56 13 1 GCCGCACGCC 0.936798 -236 TCAAGCGTAAGCCGCCAGGCACGAGCAACCA 56 67 0 GCCGCCGGCA 0.874189 -182 AATTGGCCCGGCATCCACGCCCCTACATCAA 56 94 0 GCATCCCGCC 0.798695 -155 TAACCGTGGCGGGGCATGGCCGACAAACAGA 56 196 1 GGGGCAGGCC 0.966893 -53 CGCCGGTTAGCCAGCCAGGGCGCAAACCGAC 57 15 1 CCAGCCGGGC 0.602152 -66 ATCGCCTAGTCGCCCGTCGCCTTCGCTGTAC 58 44 0 CGCCCGCGCC 0.911143 -187 TGTATCTACTCGCCAGTCGCCTTCGCGCTGC 58 115 0 CGCCAGCGCC 0.500971 -116 GGCCCGGTTACGACCGCGGCATAACTGAAAA 58 162 1 CGACCGGGCA 0.896613 -69 ACGCAAACCTGGCGCAGGGCAACCTGAACAG 59 19 0 GGCGCAGGCA 0.868427 -282 GCCGGGCATACGACCAGCGCCCACACGGGCG 59 53 1 CGACCACGCC 0.909575 -248 AGCGCCCACACGGGCGCGTCCGGTCCCACCC 59 68 1 CGGGCGGTCC 0.82523 -233 CCCGCGCTCGGGCGTGTCGCCCGCACACAGC 59 141 0 GGCGTGCGCC 0.64573 -160 GACACGCCCGAGCGCGGGGCCGGTGGACCTA 59 154 1 AGCGCGGGCC 0.859142 -147 CGACAGGTAAACAGCGGCGCAGTATTCGGCG 59 185 1 ACAGCGCGCA 0.657042 -116 AGGACCGGGTCGATCGGCGCGCCGGGGAGCA 59 236 1 CGATCGCGCG 0.731262 -65 GCTTCGCTCTGCATCGTCGCCGGG 60 4 0 GCATCGCGCC 0.899353 -89 GCGATGAGGAGGAGCAGGGCAATGCGGCCTA 60 33 1 GGAGCAGGCA 0.786243 -60 CTCTCGTCGCCGGGCTAGGCCGCATTGCCCT 60 48 0 CGGGCTGGCC 0.827718 -45 TACCGGATTGGCGGTAGCGCCCACGATCGTC 62 35 0 GCGGTACGCC 0.625728 -266 TGAGTCCGCCCCACCAGGGCAGATCAACCCA 62 88 0 CCACCAGGCA 0.658216 -213 GAGCAGACCTCGGCCGGCGCGCATAAGCTTT 62 174 1 CGGCCGCGCG 0.902953 -127 CGCCGACGGGCACGCGGGGCCGACCAAGCAA 62 203 0 CACGCGGGCC 0.811113 -98 ATCGCTTGCGGCCCCCTCGCCGCTGCGCGTC 63 71 0 GCCCCCCGCC 0.870173 -93 TCGATAGCTCGCACCGTGGCGGCCCGGAACG 65 22 1 GCACCGGGCG 0.751726 -139 CGGCCCGGAACGGGCCAGTCCATACCAGCTG 65 41 1 CGGGCCGTCC 0.676468 -120 CACGATTTGGCGCGCGACGCCGTACGTCCTG 65 83 1 CGCGCGCGCC 0.722421 -78 GCGACGCCGTACGTCCTGGCCTGCGGGTGTT 65 96 1 ACGTCCGGCC 0.582441 -65 AAGATGACCCCGGGCTGCGCAGGAGGATAGA 65 140 1 CGGGCTCGCA 0.566833 -21 GCCCAACCACCGCGTCGCATTGGGACAGG 66 9 1 ACCGCGCGCA 0.801223 -198 GACAGGGTAGCGAGCCCGGCGATGGCGTGCC 66 34 1 CGAGCCGGCG 0.814106 -173 GCCCGGCGATGGCGTGCCGCCAGCGCGCCGG 66 47 1 GGCGTGCGCC 0.787739 -160 CCGGATGGTTCCGCTCGGGCCGATTCTGATG 66 98 1 CCGCTCGGCC 0.60098 -109 TTTGCTACTCAGATCGACGCCGCGGTGAATT 66 156 0 AGATCGCGCC 0.742133 -51 AGGGCGCACTGGCGCACCGGCAGCCCGCCGA 67 30 1 GGCGCACGGC 0.748094 -64 GATCGTCTGCGCGTCGTGGCGGTGCGGAGTT 68 118 0 GCGTCGGGCG 0.696302 -44 GAGCCGAAGACGGACAACGCCG 70 2 0 CGGACACGCC 0.646649 -66 GGGTACTCGGGGGGCGGCGCCCCCCGAGGGT 72 16 0 GGGGCGCGCC 0.875765 -136 GGGTACTCGGGGGGCGGCGCCCCCCGAGGGT 72 56 0 GGGGCGCGCC 0.875765 -96 GGGGCACTCGGGGGCGGCGCCCCCGAGGGTG 72 88 0 GGGGCGCGCC 0.875765 -64 TACGCGGCCCGCATCGTCGCCGAA 73 4 0 GCATCGCGCC 0.899353 -212 TGAATGAGCTGGCCCATCTCCATCGATGCCA 73 99 0 GGCCCACTCC 0.466256 -117 GGCCCGGCCTCCGTCCGGGCGTGAATGAGCT 73 120 0 CCGTCCGGCG 0.570765 -96 CTTTGGGTGTGGGGCCCGGCCTCCGTCCGGG 73 132 0 GGGGCCGGCC 0.9748 -84 TATTCCGGTGAGCGCGTGGCCTACGGCGTTT 75 41 1 AGCGCGGGCC 0.95485 -213 ACCCACATTACCCGCATCGCCGTGCTCTGCG 75 74 0 CCCGCACGCC 0.970447 -180 GGCACGGGACACCGCACCGCCAACCCACATT 75 96 0 ACCGCACGCC 0.849289 -158 CGCGGAATTTCCACCACCGGCTCACGTTTGT 75 167 1 CCACCACGGC 0.433836 -87 ****** **** Masking position 9 Map Score: 71.9188 Number of sites scoring better than the average of aligned sites = 3046 Number in coding regions = 2892 Number in noncoding regions = 154 Number of orfs with sites within 600 bp upstream = 92 Fraction of orfs with sites within 600 bp upstream = 0.0147767 Motif number 3 GTATTCAAAGGCGGCCGCCGCCGTTACAGGC 1 145 1 GCGGCGCCGC 0.46598 -156 CTATCTACGTGCGCCGGGGGGATCGGA 2 46 1 GCGCCGGGGG 0.694943 -17 TGTTTCTTGTCGGGTTGCGAGTTTTAACAAG 6 13 1 CGGGTGCGAG 0.789606 -81 AATGTCAGTGTCGCGAACGGCGAGGCCTATC 43 20 0 TCGCGACGGC 0.930165 -199 CACTGACATTGCGCACACGACACGCCGCGGA 43 41 1 GCGCAACGAC 0.50455 -178 TCGACCGTGGCCGCACACGACCACAGGAGGT 43 186 1 CCGCAACGAC 0.70194 -33 TCGGCCTGCCAGGCACTGGCTG 44 2 1 CGGCCGCCAG 0.738912 -102 CCGCCTGGGTTCGGCGGCTGGTCGTGTTCTT 44 68 0 TCGGCGCTGG 0.699677 -36 ATGTGAGCCCCGGCGTAGTGGGTTGGCCAGG 48 37 1 CGGCGAGTGG 0.537116 -264 TGCCTGCCAACCGCGAAGGGGCGTAGCTCAA 48 82 1 CCGCGAGGGG 0.875031 -219 CAGAGCGGAACGGCTCGCGGGGTAGCTAGTA 48 264 1 CGGCTGCGGG 0.949793 -37 GTCGCCGTTTTGGCTGACCGGACCGGGCCAG 52 49 1 TGGCTACCGG 0.784717 -252 CTTCGGTGGATCGGCAACCACAATAGCCTGG 52 76 0 TCGGCACCAC 0.444814 -225 TCCTCCTGCGTGGGTCGCCGGGATGCTCCCG 52 139 0 TGGGTGCCGG 0.741295 -162 AACTAGGCCGGCGCGCGCCGGCGGTGCTGCC 52 173 0 GCGCGGCCGG 0.883821 -128 GACGCAGGAAGCGGTCGGGGCGTGGAACTAG 52 198 0 GCGGTGGGGC 0.467821 -103 CTGCGACCACCCGGGAACGACGAACGCCCCG 52 228 0 CCGGGACGAC 0.84485 -73 TCCCGGGTGGTCGCAGACGGCACGTCGTACC 52 243 1 TCGCAACGGC 0.806528 -58 TGGTGGCAGTCGGGGTACGACGTGCCGTCTG 52 256 0 CGGGGACGAC 0.807968 -45 CTTCCTGGTGTGGGGTACTGGGTGA 53 5 0 TGGGGACTGG 0.70216 -32 CCGGATATCGGCGCTAGCTGGCGATCTCGAC 54 11 0 GCGCTGCTGG 0.692078 -290 GTTGGACGTTGCGCTGGCTACTTCCTGCCCA 54 89 1 GCGCTGCTAC 0.296509 -212 AACCGCTGAGCCGCAAACTGGGCTCAGACTA 54 148 0 CCGCAACTGG 0.73104 -153 AAAATTATCGCGGCGAACGGGCCCGTGGGCA 54 228 1 CGGCGACGGG 0.969063 -73 TGCGACACACCCGGCCGCGGGTAACCGTGGC 56 175 1 CCGGCGCGGG 0.930606 -74 GCGCCCTGGCTGGCTAACCGGCGCTTC 57 7 0 TGGCTACCGG 0.784717 -74 TCCCACTCTTTCGGTTGCTAGTTAGCTGTCT 57 52 0 TCGGTGCTAG 0.335612 -29 GCGAAGGCGACGGGCGACTAGGCGATGCGAA 58 49 1 CGGGCACTAG 0.483481 -182 CTCGTGAGCTTCGCTCACTAGCGGTCGTCTT 58 78 0 TCGCTACTAG 0.391051 -153 GTAGGCTGGCCCGGTTACGACCGCGGCATAA 58 155 1 CCGGTACGAC 0.751622 -76 GACGCAAACCTGGCGCAGGGCAACCTGAACA 59 20 0 TGGCGAGGGC 0.640046 -281 GCGTCTGGCCGGGCATACGACCAGCGCCCAC 59 46 1 GGGCAACGAC 0.440358 -255 TCCACCGGCCCCGCGCTCGGGCGTGTCGCCC 59 150 0 CCGCGTCGGG 0.720591 -151 CCGGGTCGATCGGCGCGCCGGGGAGCACCGG 59 240 1 CGGCGGCCGG 0.93624 -61 AGCACCGGACCCGGATACGGGCTCGAGTGGG 59 263 1 CCGGAACGGG 0.90056 -38 GCGGCCTAGCCCGGCGACGAGAGCGTGAGAG 60 56 1 CCGGCACGAG 0.849524 -37 CATGATCTACCCGGATACCGGATTGGCGGTA 62 50 0 CCGGAACCGG 0.620501 -251 GCGGTCTTTGTCGCCGACGGGCACGCGGGGC 62 214 0 TCGCCACGGG 0.932508 -87 CGGGACACGGGGACTAGAACA 63 1 1 CGGGAACGGG 0.876459 -163 ACATATGACCGCGCTGACGACGATGCAGTGG 63 29 1 GCGCTACGAC 0.643943 -135 CAGACGCGCAGCGGCGAGGGGGCCGCAAGCG 63 69 1 GCGGCAGGGG 0.593845 -95 CTCCTCCTCATCGCTTGCGGCCCCCTCGCCG 63 80 0 TCGCTGCGGC 0.88946 -84 CTCGATGACCGCGCTGACGACGATGCAGAGC 63 116 1 GCGCTACGAC 0.643943 -48 TGGCCCGTTCCGGGCCGCCACGGTGCGAGCT 65 27 0 CGGGCGCCAC 0.581088 -134 TTACACGATTTGGCGCGCGACGCCGTACGTC 65 80 1 TGGCGGCGAC 0.754022 -81 CCGTACGTCCTGGCCTGCGGGTGTTGGGCGC 65 102 1 TGGCCGCGGG 0.920682 -59 CCCCATCAACCGGCGCGCTGGCGGCACGCCA 66 56 0 CGGCGGCTGG 0.879519 -151 GCGTGAAAACTGGGTAACCGGTTGTTAAAAT 66 128 1 TGGGTACCGG 0.725023 -79 TAGGGCGCACTGGCGCACCGGCAGCCCGCCG 67 29 1 TGGCGACCGG 0.867701 -65 CGGCTCGATATCGCCTACGACGGAACCGATT 70 27 1 TCGCCACGAC 0.719513 -41 GGAACCGATTTCGCGGGCTGGGCTGCACAA 70 48 1 TCGCGGCTGG 0.820879 -20 GGGGGGTACTCGGGGGGCGGCGCCCCCCGAG 72 19 0 CGGGGGCGGC 0.943469 -133 CCCCGAGGGTTGGGTTGGGGGGTACTCGGGG 72 35 0 TGGGTGGGGG 0.534409 -117 TGGGGGTACTCGGGGGGCGGCGCCCCCCGAG 72 59 0 CGGGGGCGGC 0.943469 -93 GTGGGGGCACTCGGGGGCGGCGCCCCCGAGG 72 91 0 TCGGGGCGGC 0.912872 -61 ACGATGCGGGCCGCGTAGTGGTCCGAGGAGG 73 18 1 CCGCGAGTGG 0.600258 -198 TCTAACCGCTCGGCTCACCGGTGCTATTCCG 75 17 1 CGGCTACCGG 0.877899 -237 CGTAGGCCACGCGCTCACCGGAATAGCACCG 75 35 0 GCGCTACCGG 0.573853 -219 GGTGAGCGCGTGGCCTACGGCGTTTTGCGCA 75 47 1 TGGCCACGGC 0.878539 -207 CAAACCGGCACGGGACACCGCACCGCCAACC 75 102 0 CGGGAACCGC 0.674154 -152 GGTGGAAATTCCGCGAAGGGCTCCGAGAAAT 75 151 0 CCGCGAGGGC 0.8259 -103 ACGTGCTGCGCCGGAATCGGGTGCACCGACA 75 207 1 CCGGATCGGG 0.36847 -47 ***** ***** Masking position 3 Map Score: 60.6716 Number of sites scoring better than the average of aligned sites = 4608 Number in coding regions = 4289 Number in noncoding regions = 319 Number of orfs with sites within 600 bp upstream = 184 Fraction of orfs with sites within 600 bp upstream = 0.0295535 Motif number 4 ATCTACGTGCGCCGGGGGGATCGGA 2 48 1 GCCGGGGGCG 0.758955 -15 TCTATTCAGGACTGTCCAGTCCTTCCCTCCCC 4 157 0 GACTGCCACC 0.475582 -22 TCACGACTGAGACGACGGATTCCATATAAAAAG 7 181 0 GACGAGGACC 0.784124 -71 ATAAAGAGAGGACGGGGGAAATCCGA 27 39 1 GACGGGGATC 0.563905 -16 ACTAACAGCAGACGGAGAAAAGCGTACATTTCA 28 124 1 GACGGGAAGC 0.665838 -177 CAGGCAACGAGTCGGTGCATTCGTTTCATAAAT 31 62 0 GTCGGGCACG 0.816259 -115 TTAATGAGAGGACGGTGCTTAGC 37 157 1 GACGGGCTGC 0.718932 -13 TATAAAAACATTCGGTGCAAAGCATGTTGCAGC 39 207 1 TTCGGGCAGC 0.469635 -94 CCTCCTTTTGGACTAAGCGGCCCATAATGGGCA 42 79 0 GACTAGCGCC 0.399272 -32 AACCCGGTGCGACGATCCGCGGCGTGTCGTGTG 43 54 0 GACGACCGGC 0.823001 -165 CGAAAATGCCGACCAGGCACCACCGCACTCCAG 43 91 0 GACCAGCAAC 0.306833 -128 TGGGCGAGTTGCCGACGCAGGCGACCCTCCTGC 43 147 1 GCCGAGCACG 0.888565 -72 TGCGGCCACGGTCGATCCGTGGCAGGAGGGTCG 43 168 0 GTCGACCGGC 0.605293 -51 TGCCAACCGCGAAGGGGCGTAGCTCAACTGGCA 48 86 1 GAAGGGCGGC 0.298502 -215 AACGTTCGACGACGATGCAGGCACGGCCTGAAG 48 180 1 GACGAGCACA 0.443503 -121 CTGAAGAGGAGACGGACCATAGGTATGTGCCAT 48 207 1 GACGGCCAGG 0.856186 -94 TACTCAGCGGGCCGAAGCTGGCCCTCCCACGGG 51 18 0 GCCGAGCTCC 0.570408 -49 TGAATCCCGCGACGCCGCACCGG 52 1 0 GACGCGCAGG 0.355134 -300 TATTGTGGTTGCCGATCCACCGAAGACCGTCGG 52 82 1 GCCGACCAGA 0.334045 -219 CACGCAGGAGGACGAGGCAGCACCGCCGGCGCG 52 158 1 GACGAGCAAC 0.646985 -143 AGGCAGCACCGCCGGCGCGCGCCGGCCTAGTTC 52 172 1 GCCGGGCGCC 0.973501 -129 GCAGGAAGCGGTCGGGGCGTGGAACTAGGCCGG 52 193 0 GTCGGGCGGA 0.332056 -108 CGCTTCCTGCGTCGGGGCGTTCGTCGTTCCCGG 52 216 1 GTCGGGCGCG 0.753884 -85 CATACCTCCTGACGGTGCAAGTCTGGTGGCAGT 52 277 0 GACGGGCATC 0.845695 -24 AATAGCGCAGGACGGCGCATTCCTCAAATACCC 54 56 0 GACGGGCACC 0.973937 -245 CAGATCGTTCGCCGGCCGAAACCGACAAAATTA 54 202 1 GCCGGCGACC 0.83017 -99 CGGCGAACGGGCCCGTGGGCACCGCTCCTCTAA 54 238 1 GCCCGGGGCC 0.677448 -63 CACTTCATGCGACCAACGAGAGCCCTTAGAGGA 54 263 0 GACCACGAGC 0.278504 -38 GGGCGTTGCGGCCGAAGCAGGGCG 56 2 0 GCCGAGCAGC 0.96153 -247 GGGCGTGGATGCCGGGCCAATTCGCATGTCCGC 56 103 1 GCCGGCCATC 0.752395 -146 ATTCGTCTCATCCGAGGCATCGCGGACATGCGA 56 124 0 TCCGAGCAGC 0.613811 -125 GGGTAACCGTGGCGGGGCATGGCCGACAAACAG 56 193 1 GGCGGGCAGC 0.764933 -56 GGCGACGGGCGACTAGGCGATGCGAAGACGACC 58 54 1 GACTAGCGGC 0.430036 -177 CTGGTCGTATGCCCGGCCAGACGCAAACCTGGC 59 37 0 GCCCGCCACG 0.644368 -264 CGGGCGTGTCGCCCGCACACAGCCTTGTCGCGA 59 131 0 GCCCGACAGC 0.346179 -170 CGGGCGACACGCCCGAGCGCGGGGCCGGTGGAC 59 149 1 GCCCGGCGGG 0.785362 -152 CGGCGCAGTATTCGGCGCAACGCTAGATCGGTC 59 199 1 TTCGGGCAGC 0.469635 -102 TCCCCGGCGCGCCGATCGACCCGGTCCTTCTGG 59 231 0 GCCGACGACG 0.421696 -70 CGATCGGCGCGCCGGGGAGCACCGGACCCGGAT 59 246 1 GCCGGGAGCC 0.633865 -55 CCCGGCGACGATGCAGAGCGAAGCGATGA 60 7 1 GACGAGCAGC 0.945878 -86 GCTTATGCGCGCCGGCCGAGGTCTGCTCACGGC 62 169 0 GCCGGCGATC 0.417521 -132 ACGCGGGGCCGACCAAGCAAAGCTTATGCGCGC 62 190 0 GACCAGCAGC 0.808469 -111 GGTCTTTGTCGCCGACGGGCACGCGGGGCCGAC 62 210 0 GCCGAGGGCG 0.564685 -91 CGGCGACAAAGACCGCGCACGTCAGGGATGGTC 62 229 1 GACCGGCATC 0.569644 -72 CCGCGCTGACGACGATGCAGTGGGGGTACCCCC 63 37 1 GACGAGCAGG 0.863537 -127 CCGCGCTGACGACGATGCAGAGCGCAAGCGATG 63 124 1 GACGAGCAGC 0.945878 -40 TCTATCCTCCTGCGCAGCCCGGGGTCATCT 65 141 0 TCCTGGCACC 0.175451 -20 GCCCAACCACCGCGTCGCATTGG 66 1 1 GCCCACCAGC 0.70063 -206 AGGGTAGCGAGCCCGGCGATGGCGTGCCGCCAG 66 37 1 GCCCGCGAGC 0.572689 -170 TCGGCGGGCTGCCGGTGCGCCAGTGCGCCCTAG 67 28 0 GCCGGGCGAG 0.613705 -66 TTGCGACGTCGACGGTACAGTGCCACCTAGCTG 69 41 1 GACGGACAGC 0.605135 -72 TCGAGCCGAAGACGGACAACGCCG 70 2 0 GACGGCAACC 0.404881 -66 TTCGGCGACGATGCGGGCCGCGTAGTGGT 73 7 1 GACGAGCGCC 0.913903 -209 GCATTTAGTTGTCGGGCCGTCCGGCTCCTCCTC 73 42 0 GTCGGCCGCG 0.542807 -174 TGCACCCGATTCCGGCGCAGCACGTGCTCGGAC 75 199 0 TCCGGGCAAC 0.288037 -55 TCTCTTCCTTGTCGGTGCACCCGATTCCGGCGC 75 214 0 GTCGGGCACG 0.816259 -40 ***** *** ** Masking position 3 Map Score: 55.1304 Number of sites scoring better than the average of aligned sites = 2055 Number in coding regions = 1941 Number in noncoding regions = 114 Number of orfs with sites within 600 bp upstream = 89 Fraction of orfs with sites within 600 bp upstream = 0.0142949 Motif number 5 TCCGCTATAACCACATAAGGAGGAAATTTTAAA 6 71 1 CCACATGGGG 0.137098 -23 AGGTTGCTGACACACCCGGCCGCTTTGCCATGG 15 148 1 CACACCGCGC 0.33176 -88 ACATTGCGCACACGACACGCCGCGGATCGTCGC 43 46 1 CACGACGCGC 0.732645 -173 CGAAGAAGAACACGACCAGCCGCCGAACCCAGG 44 63 1 CACGACGCGC 0.732645 -41 CCGGGGCTCACATGACACGCGCGCCCTCCGTTC 48 17 0 CATGACGCCG 0.476961 -284 GCAGGCAAGACCAGACCAGGCCCTGGCCAACCC 48 56 0 CCAGACGGCC 0.747269 -245 GTCTTGCCTGCCAACCGCGAAGGGGCGTAGCTC 48 78 1 CCAACCGAGG 0.485588 -223 CTGGAAGGTGCCCCACCAGAGCGGAACGGCTCG 48 248 1 CCCCACGACG 0.816256 -53 GCCTGTGTGGCCTGCCCTGCTGGG 50 2 0 CCTGCCGCGG 0.717177 -50 GCAGGGCAGGCCACACAGGCTGAAACAAGGAAG 50 15 1 CCACACGCGA 0.713631 -37 AGCATCCCGGCGACCCACGCAGGAGGACGAGGC 52 143 1 CGACCCGCGG 0.541924 -158 GGCCTAGTTCCACGCCCCGACCGCTTCCTGCGT 52 195 1 CACGCCGACG 0.673803 -106 CCGTCTGCGACCACCCGGGAACGACGAACGCCC 52 230 0 CCACCCGACG 0.854189 -71 CCGACTGCCACCAGACTTGCACCGTCAGGAGGT 52 274 1 CCAGACGCCC 0.881812 -27 ACCCAGTACCCCACACCAGGAAGGACCGCCCAT 53 13 1 CCACACGGAG 0.23159 -24 GAGGAGCGGTGCCCACGGGCCCGTTCGCCGCGA 54 235 0 GCCCACGCCG 0.601238 -66 CTTTGACCTGCCAGACTGGCGGCGGGTATTGTG 56 36 1 CCAGACGCGC 0.88246 -213 TCAAGCGTAAGCCGCCAGGCACGAGCAACCACA 56 65 0 GCCGCCGCCG 0.63643 -184 AGCTATGCGACACACCCGGCCGCGGGTAACCGT 56 170 1 CACACCGCGC 0.33176 -79 CGCCGGTTAGCCAGCCAGGGCGCAAACCGACAG 57 15 1 CCAGCCGGGC 0.705502 -66 TAAGCACTAACAAGTCCAGGAGGACACAAAA 58 210 1 CAAGTCGGGG 0.233494 -21 CGACCAGCGCCCACACGGGCGCGTCCGGTCCCA 59 63 1 CCACACGCCG 0.945685 -238 GCGTCCGGTCCCACCCTTGAAGCGCGACGATTT 59 83 1 CCACCCGAGC 0.716635 -218 TACCTCACTCCCACTCGAGCCCGTATCCGGGTC 59 270 0 CCACTCGCCG 0.663342 -31 TGTGAGTCCGCCCCACCAGGGCAGATCAACCCA 62 88 0 CCCCACGGCA 0.47064 -213 GCTTGGTCGGCCCCGCGTGCCCGTCGGCGACAA 62 205 1 CCCCGCGCCG 0.621916 -96 CAGGACCATCCCTGACGTGCGCGGTCTTTGTCG 62 232 0 CCTGACGCCG 0.731381 -69 GTAGGAGGAGCCAGCCAGGACCATCCCTGACGT 62 247 0 CCAGCCGACA 0.435574 -54 GGGGGTACCCCCAGACGCGCAGCGGCGAGGGGG 63 58 1 CCAGACGCGC 0.891754 -106 ATCACGCGCCCAACACCCGCAGGCCAGGACGTA 65 105 0 CAACACGCGG 0.870494 -56 GCACCGGCAGCCCGCCGAGATGGGGCTGCGTTG 67 43 1 CCCGCCGAGG 0.867225 -51 TCCGCACCGCCACGACGCGCAGACGATCTTGGT 68 121 1 CACGACGCGA 0.46673 -41 TTGTGCAGCCCAGCCCGCGAAATCGGT 70 51 0 GCAGCCGCCG 0.677714 -17 TGCCTCTAATCCAGACAGGAGCGTCAGCT 71 13 1 CCAGACGACG 0.825083 -19 ACCCAACCCTCGGGGGGCGCCGCCCC 72 4 1 CAACCCGGGG 0.777723 -148 CCCCCCAACCCAACCCTCGGGGGGCGCCGCCCC 72 44 1 CAACCCGGGG 0.777723 -108 CCGAGTACCCCCACCCTCGGGGGCGCCGCCCCC 72 77 1 CCACCCGGGG 0.872127 -75 CCAGCTCATTCACGCCCGGACGGAGGCCGGGCC 73 118 1 CACGCCGAGG 0.695063 -98 ACTGGGCACGCCAAACCGGCACGGGACACCGCA 75 111 0 CCAAACGCCG 0.72525 -143 GCGGAATTTCCACCACCGGCTCACGTTTGTAGT 75 168 1 CACCACGCCA 0.428999 -86 GATTCCGGCGCAGCACGTGCTCGGACTACAAAC 75 192 0 CAGCACGCCG 0.336443 -62 ****** ** ** Masking position 9 Map Score: 37.057 Number of sites scoring better than the average of aligned sites = 842 Number in coding regions = 753 Number in noncoding regions = 89 Number of orfs with sites within 600 bp upstream = 59 Fraction of orfs with sites within 600 bp upstream = 0.00947639 Motif number 6 AAGGTCTTAAGGGCGCACTTCTAAAACCCG 1 93 0 GGGCGCACTT 0.667296 -208 TACGTGCGCCGGGGGGATCGGA 2 51 1 GGGGGGATCG 0.767506 -12 TCCGCTCTGGTGGGGCACCTTCCAGTGTCC 48 243 0 TGGGGCACCT 0.63037 -58 TTGAAGGTCCGGGAGCATCCCGGCGACCCA 52 130 1 GGGAGCATCC 0.552584 -171 AGGAGGACGAGGCAGCACCGCCGGCGCGCG 52 163 1 GGCAGCACCG 0.650537 -138 CTTCCTGGTGTGGGGTACTGGGTGA 53 6 0 TGGGGTACTG 0.513523 -31 GAACGGGCCCGTGGGCACCGCTCCTCTAAG 54 242 1 GTGGGCACCG 0.887817 -59 GCGCTTCAAGGGTGGGACCGGACGCGCCCG 59 78 0 GGTGGGACCG 0.776919 -223 CGGCGCGCCGGGGAGCACCGGACCCGGATA 59 250 1 GGGAGCACCG 0.964978 -51 TGCCCTGGTGGGGCGGACTCACATTAGCGA 62 98 1 GGGCGGACTC 0.696024 -203 CTGCGCGTCTGGGGGTACCCCCACTGCATC 63 50 0 GGGGGTACCC 0.955236 -114 GCCGGTTGATGGGGTCACCCGTGATCCGGA 66 73 1 GGGGTCACCC 0.822353 -134 CGTCAGCCTAGGGCGCACTGGCGCACCGGC 67 21 1 GGGCGCACTG 0.945123 -73 ACAACAGCTAGGTGGCACTGTACCGTCGAC 69 48 0 GGTGGCACTG 0.856776 -65 CCAACCCTCGGGGGGCGCCGCCCCCCGAGT 72 13 1 GGGGGCGCCG 0.978323 -139 GGTTGGGTTGGGGGGTACTCGGGGGGCGGC 72 29 0 GGGGGTACTC 0.894048 -123 CCAACCCTCGGGGGGCGCCGCCCCCCGAGT 72 53 1 GGGGGCGCCG 0.978323 -99 CCCCGAGGGTGGGGGTACTCGGGGGGCGGC 72 69 0 GGGGGTACTC 0.894048 -83 CCCCACCCTCGGGGGCGCCGCCCCCGAGTG 72 85 1 GGGGGCGCCG 0.978323 -67 TGACGTCTGTGGGGGCACTCGGGGGCGGCG 72 100 0 GGGGGCACTC 0.977383 -52 CGCCGGAATCGGGTGCACCGACAAGGAAGA 75 215 1 GGGTGCACCG 0.865338 -39 ********** Masking position 5 Map Score: 27.2906 Number of sites scoring better than the average of aligned sites = 168 Number in coding regions = 150 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 7 GCCTGTAACGGCGGCGGCCGCCTTTGAATACT 1 144 0 GCGGCGGCCC 0.936398 -157 TTCAAACAGAGTGGAACCGCGCGGTTAAAGCG 1 203 1 GTGGAACCGC 0.738623 -98 CATTAGCTGAGAGGAGGCCGGTTTTCC 33 111 1 GAGGAGGCGT 0.640714 -17 ACGGCCTGAAGAGGAGACGGACCATAGGTATG 48 202 1 GAGGAGACAC 0.475316 -99 AGAGCCCTTAGAGGAGCGGTGCCCACGGGCCC 54 246 0 GAGGAGCGGC 0.846337 -55 CCTACATCAAGCGTAAGCCGCCAGGCACGAGC 56 72 0 GCGTAAGCCC 0.468694 -177 GCTCACGAGTGAGGAGCCGAGCAATGGGTACA 58 17 1 GAGGAGCCGC 0.987587 -214 ACAACCATACGAGTAGGCTGGCCCGGTTACGA 58 143 1 GAGTAGGCGC 0.835052 -88 AAGCGATGAGGAGGAGCAGGGCAATGCGGCCT 60 31 1 GAGGAGCAGC 0.787963 -62 GGAGTTTCAGGAGTAGCCAACC 61 29 1 GAGTAGCCCC 0.917945 -12 CGACGGGCACGCGGGGCCGACCAAGCAAAGCT 62 199 0 GCGGGGCCCC 0.952107 -102 TGCACGGTAGGAGGAGCCAGCCAGGACCATCC 62 254 0 GAGGAGCCCC 0.988923 -47 AGTGTGGTGAGAGGAAGCAACC 64 12 1 GAGGAAGCCC 0.887436 -12 ATCGGCCCGAGCGGAACCATCCGGATCACGGG 66 90 0 GCGGAACCCC 0.932723 -117 CGCGATACCCGAGGAGGCCCGC 66 195 1 GAGGAGGCGC 0.975791 -12 TACTCGGGGGGCGGCGCCCCCCGAGGGTTGGG 72 12 0 GCGGCGCCCC 0.932819 -140 TACTCGGGGGGCGGCGCCCCCCGAGGGTTGGG 72 52 0 GCGGCGCCCC 0.932819 -100 GTGGTCCGAGGAGGAGCCGGACGGCCCGACAA 73 35 1 GAGGAGCCAC 0.932221 -181 ATCTTTGGGTGTGGGGCCCGGCCTCCGTCCGG 73 133 0 GTGGGGCCGC 0.779473 -83 ******** ** Masking position 3 Map Score: 24.5111 Number of sites scoring better than the average of aligned sites = 233 Number in coding regions = 208 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 22 Fraction of orfs with sites within 600 bp upstream = 0.00353357 Motif number 8 TTTATACTCTTCCCTGTCAACAATCATTTA 1 11 0 TCCCTGTCAA 0.858105 -290 GGGTAAACCCTCCCACTCAAGGTTTCATTC 5 113 0 TCCCACTCAA 0.720216 -55 TCTCACTTCATCGCAGTCAAAGACCAACAT 15 119 0 TCGCAGTCAA 0.873012 -117 AGATTTTGTGTCCCTGTCAATAATGGGTTA 31 22 1 TCCCTGTCAA 0.858105 -155 GTCGGCATTTTCGCAGTCGAGGGCTCTCGT 43 111 1 TCGCAGTCGA 0.951007 -108 CACTGGCTGTTCGCTGTCGGTGCGGTTACG 44 24 1 TCGCTGTCGG 0.96017 -80 GTCCTCTCTGTCACTCTCGAGCC 49 4 0 TCACTCTCGA 0.676964 -28 GTCGCGGGATTCACACTCGGCGATACGTGT 52 21 1 TCACACTCGG 0.770803 -280 TCCCGGGTGGTCGCAGACGGCACGTCGTAC 52 243 1 TCGCAGACGG 0.714996 -58 GCAAGTCTGGTGGCAGTCGGGGTACGACGT 52 264 0 TGGCAGTCGG 0.696803 -37 TAGCTGTCTATCACTGTCGGTTTGCGCCCT 57 31 0 TCACTGTCGG 0.887649 -50 CCTACCTCACTCCCACTCGAGCCCGTATCC 59 275 0 TCCCACTCGA 0.879065 -26 GGCTTCCCTATCGCTGTCAACGCAGCCCCA 67 63 0 TCGCTGTCAA 0.858105 -31 GGAGGTATGGTCCCAGTCCGTTCCCTGCCC 73 172 0 TCCCAGTCCG 0.78015 -44 ATCCTTCTCTTCCTTGTCGGTGCACCCGAT 75 222 0 TCCTTGTCGG 0.57699 -32 ********** Masking position 1 Map Score: 7.82627 Number of sites scoring better than the average of aligned sites = 382 Number in coding regions = 335 Number in noncoding regions = 47 Number of orfs with sites within 600 bp upstream = 15 Fraction of orfs with sites within 600 bp upstream = 0.00240925 Motif number 9 AAGAAAGACCACCTTTTACCATT 41 28 0 GAAAGCCACC 0.370112 -13 ATCCGTGGCAGGAGGGTCGCCTGCGTCGGCA 43 156 0 GGAGGTCGCC 0.954083 -63 GTGCGGTTACGTAGGCTCGGCGAAGAAGAAC 44 43 1 GTAGGTCGGC 0.869156 -61 CATCGTCGTCGAACGTTCGCCTTCAGCAGGG 48 166 0 GAACGTCGCC 0.80617 -135 CCTACCCGTGGGAGGGCCAGCTTCGGCCCGC 51 14 1 GGAGGCCAGC 0.923145 -53 GACGGTCTTCGGTGGATCGGCAACCACAATA 52 82 0 GGTGGTCGGC 0.881137 -219 GCAATCGGTTGAAGGTCCGGGAGCATCCCGG 52 122 1 GAAGGCCGGG 0.904155 -179 CCCACACCAGGAAGGACCGCCCATC 53 22 1 GAAGGCCGCC 0.965981 -15 GATCCGGACAGATCGTTCGCCGGCCGAAACC 54 194 1 GATCGTCGCC 0.508407 -107 GGCGCTGGTCGTATGCCCGGCCAGACGCAAA 59 43 0 GTATGCCGGC 0.505597 -258 TTTACCTGTCGTAGGTCCACCGGCCCCGCGC 59 165 0 GTAGGCCACC 0.674427 -136 GATCGGTCCAGAAGGACCGGGTCGATCGGCG 59 224 1 GAAGGCCGGG 0.904155 -77 CTCGCACCGTGGCGGCCCGGAACGGGCCAGT 65 29 1 GGCGGCCGGA 0.703631 -132 CCGCAGGCCAGGACGTACGGCGTCGCGCGCC 65 91 0 GGACGACGGC 0.73738 -70 CCGGCGCGCTGGCGGCACGCCATCGCCGGGC 66 47 0 GGCGGACGCC 0.658061 -160 GCCCTAGGCTGACGGCTCGGGCTG 67 4 0 GACGGTCGGG 0.688073 -90 CTGGCGCACCGGCAGCCCGCCGAGATGGGGC 67 38 1 GGCAGCCGCC 0.63609 -56 TTAGTTGTCGGGCCGTCCGGCTCCTCCTCGG 73 40 0 GGCCGCCGGC 0.898062 -176 CATCGATGGAGATGGGCCAGCTCATTCACGC 73 102 1 GATGGCCAGC 0.659514 -114 ACGCCCGGACGGAGGCCGGGCCCCACACCCA 73 129 1 GGAGGCGGGC 0.826162 -87 ACAAGGAAGAGAAGGATCGCCAGAAAGTA 75 235 1 GAAGGTCGCC 0.933638 -19 ***** ***** Masking position 5 Map Score: 15.9756 Number of sites scoring better than the average of aligned sites = 578 Number in coding regions = 537 Number in noncoding regions = 41 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 10 CATGACAGAGACGCTTTAACCGCGCGGTTCCA 1 214 0 ACCTTAACCG 0.704915 -87 GGGAGGTTATCCGCTATAACCACATAAGGAGG 6 62 1 CCCATAACCA 0.753118 -32 TAGGACACCTCCTTATCCGATCAAATATT 26 12 0 CCCTTATCCG 0.807698 -19 TACTTCCTGCCCACCTCACCCGCCACTTGACA 54 107 1 CCCTCACCCG 0.98366 -194 CCTGCTTCGGCCGCAACGCCCGCTTTGACCTG 56 14 1 CCCACGCCCG 0.911774 -235 GCACGAGCAACCACAATACCCGCCGCCAGTCT 56 48 0 CCCATACCCG 0.974101 -201 CCTACCGTGCACACGTCAACCAGGTCAGGAGA 62 275 1 ACCTCAACCA 0.457713 -26 TGCATCACGCGCCCAACACCCGCAGGCCAGGA 65 109 0 GCCACACCCG 0.941512 -52 TCACGGGTGACCCCATCAACCGGCGCGCTGGC 66 65 0 CCCTCAACCG 0.956743 -142 AAAGTCCACACCGCGATACCCGAGGAGGCCCG 66 184 1 CCCATACCCG 0.974101 -23 CGGAGGCCGGGCCCCACACCCAAAGATCTTTT 73 138 1 GCCACACCCA 0.780392 -78 CACCGCCAACCCACATTACCCGCATCGCCGTG 75 81 0 CCCTTACCCG 0.974102 -173 ** * ******* Masking position 4 Map Score: 9.62185 Number of sites scoring better than the average of aligned sites = 156 Number in coding regions = 131 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 11 CAACGAGTCGGTGCATTCGTTTCATAAATAAC 31 59 0 GGCATCGTTT 0.96187 -118 TGGTCGAATAGAGCAGACGGTTTTTATTTTCC 35 242 1 GGCAACGGTT 0.975745 -53 TAATTGTGATGGGCATTCTTTTCAAAGAATGT 39 82 1 GGCATCTTTT 0.907923 -219 ATGAACAAAAGAGCAGTCGTTTATGCTGCTCT 39 241 1 GGCATCGTTT 0.96187 -60 GCGCAAACTGTTGTGGCCTCAG 47 17 0 GGCAACTGTT 0.940208 -12 GTCGGTCACCGAGCAATCGGTTGAAGGTCCGG 52 110 1 GGCATCGGTT 0.984741 -191 GGGGCATACTGTTCAGGTTGCCC 59 2 1 GGCAACTGTT 0.940208 -299 AGCCCAGCCCGCGAAATCGGTTCCGTCGTAGG 70 40 0 GGAATCGGTT 0.878146 -28 * *** ****** Masking position 5 Map Score: 5.86159 Number of sites scoring better than the average of aligned sites = 59 Number in coding regions = 52 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 12 TATAAAACGTAATGAAGGGAGGAAAAATTC 11 94 1 AATGAAGGAG 0.800604 -20 ACGCATAATTAATGAAGGGAGGATATTCAG 12 22 1 AATGAAGGAG 0.800604 -20 CTTTGACTGCGATGAAGTGAGAGGTTGCTGA 15 127 1 GATGAAGGAG 0.941892 -109 CAGTATAAACGAAACAGGGCGTGTGACAAAC 28 223 1 GAAACAGGCG 0.765253 -78 TTACTGATTTGAAGAAGGGAGAACACTTGA 28 281 1 GAAGAAGGAG 0.931696 -20 TTGTGTATCTAAAGAAGGGCGGGACAGTTTC 33 21 1 AAAGAAGGCG 0.843463 -107 CCTCGCTCCAGCAGCAGAGAGTTACACGATA 35 189 0 GCAGCAGGAG 0.830098 -106 CGTTGCGGCCGAAGCAGGGCG 56 1 0 GAAGCAGGCG 0.9764 -248 CCCGGCGACGATGCAGAGCGAAGCGATGAG 60 10 1 GATGCAGGCG 0.980066 -83 CGCTGACGACGATGCAGTGGGGGTACCCCCA 63 40 1 GATGCAGGGG 0.918519 -124 CGCTGACGACGATGCAGAGCGCAAGCGATGA 63 127 1 GATGCAGGCG 0.980066 -37 ******* *** Masking position 6 Map Score: 9.02833 Number of sites scoring better than the average of aligned sites = 160 Number in coding regions = 153 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 13 GTTCAGCGGGTTTTTTATTGTGGCTTAAAAT 4 61 1 TTTTTTATTT 0.747861 -118 TTTGTTTCTTGTCGGGTTGCGA 6 2 1 TTGTTTCTTT 0.689379 -92 TTAGAAACCCTTTTTTCTTTTGTCTTGTAAA 9 157 1 TTTTTTCTTT 0.751394 -89 TTATACAGGGGTTTTTCTTATTTATCAAGGA 15 15 0 GTTTTTCTTT 0.848921 -221 TTTGCACACTTTTTTTATTATACAGGGGTTT 15 32 0 TTTTTTATTT 0.747861 -204 GGATTTTCGTGTGTTTATTATTCAGAAACAG 32 31 1 GTGTTTATTT 0.801946 -47 CCACTAATTTTTGTTTATTATATCATAAACG 35 33 1 TTGTTTATTT 0.685335 -262 CAGCTTCTATGTTTTCATTTTGTTCCTTATC 35 149 1 GTTTTCATTT 0.735711 -146 AGAGCAGACGGTTTTTATTTTCCACAAAAAT 35 251 1 GTTTTTATTT 0.846491 -44 AAGATTCCTTGTTTTTCTTTTTCGTTTTTCT 39 28 0 GTTTTTCTTT 0.848921 -273 CCCTCCTTTCTTTTTCATTTTAGGCGATAAT 40 15 0 TTTTTCATTT 0.599574 -23 ATCGATAACAGTTTTCATTATTGCGACGTCG 69 21 1 GTTTTCATTT 0.735711 -92 GGTGTTTCTTCTTCCTTTCGAC 72 140 0 GTGTTTCTTT 0.804918 -12 ********* * Masking position 5 Map Score: 5.81963 Number of sites scoring better than the average of aligned sites = 238 Number in coding regions = 173 Number in noncoding regions = 65 Number of orfs with sites within 600 bp upstream = 69 Fraction of orfs with sites within 600 bp upstream = 0.0110826 Motif number 14 ACCGCGAAGGGGCGTAGCTCAACTGGCAGA 48 91 1 GGCGTAGCTC 0.697152 -210 CCCTGCTTCGGCCGCAACGCCCGCTTTGAC 56 13 1 GCCGCAACGC 0.73455 -236 TCACGAGTGAGGAGCCGAGCAATGGGTACA 58 19 1 GGAGCCGAGC 0.774302 -212 TCACGAGCAATGAGCAGCGCGAAGGCGACT 58 102 1 TGAGCAGCGC 0.908917 -129 ACGCAAACCTGGCGCAGGGCAACCTGAACA 59 20 0 GGCGCAGGGC 0.973024 -281 TAGGTCCACCGGCCCCGCGCTCGGGCGTGT 59 155 0 GGCCCCGCGC 0.881651 -146 CGCAGTATTCGGCGCAACGCTAGATCGGTC 59 202 1 GGCGCAACGC 0.953397 -99 GCGATGAGGAGGAGCAGGGCAATGCGGCCT 60 33 1 GGAGCAGGGC 0.920199 -60 CGGCCCCCTCGCCGCTGCGCGTCTGGGGGT 63 64 0 GCCGCTGCGC 0.785649 -100 GCGATGAGGAGGAGTAGCGCTCGATGACCG 63 97 1 GGAGTAGCGC 0.932927 -67 GCGATGAGGAGGAGTAGCGCTCG 63 151 1 GGAGTAGCGC 0.932927 -13 CAGGACGTACGGCGTCGCGCGCCAAATCGT 65 84 0 GGCGTCGCGC 0.952474 -77 TCTATCCTCCTGCGCAGCCCGGGGTCATCT 65 141 0 TGCGCAGCCC 0.709954 -20 GGGTACTCGGGGGGCGGCGCCCCCCGAGGG 72 17 0 GGGGCGGCGC 0.970902 -135 GGGTACTCGGGGGGCGGCGCCCCCCGAGGG 72 57 0 GGGGCGGCGC 0.970902 -95 GGGGCACTCGGGGGCGGCGCCCCCGAGGGT 72 89 0 GGGGCGGCGC 0.970902 -63 TACGGCGTTTTGCGCAGAGCACGGCGATGC 75 62 1 TGCGCAGAGC 0.75713 -192 ACCCGATTCCGGCGCAGCACGTGCTCGGAC 75 199 0 GGCGCAGCAC 0.925181 -55 ********** Masking position 10 Map Score: 22.1013 Number of sites scoring better than the average of aligned sites = 401 Number in coding regions = 386 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 15 GACGCTTTAACCGCGCGGTTCCACTCTGTTT 1 206 0 CCGCCGGTTC 0.88278 -95 TCTACGTGCGCCGGGGGGATCGGA 2 49 1 CCGGGGGATC 0.63212 -14 GAGGGAAGGACTGGACAGTCCTGAATAGA 4 160 1 CTGGCAGTCC 0.334205 -19 ACCCACATACCCAGGTGGTTCATCAAAAGGC 11 63 0 CCAGTGGTTC 0.366194 -51 TCGCGATAGGCCTCGCCGTTCGCGACACTGA 43 16 1 CCTCCCGTTC 0.317919 -203 TGGCCAGGGCCTGGTCTGGTCTTGCCTGCCA 48 60 1 CTGGCTGGTC 0.655384 -241 ATAGCCTGGCCCGGTCCGGTCAGCCAAAACG 52 54 0 CCGGCCGGTC 0.983117 -247 CCTCGTCCTCCTGCGTGGGTCGCCGGGATGC 52 144 0 CTGCTGGGTC 0.470411 -157 TGCGTGAGATCCGGACAGATCGTTCGCCGGC 54 187 1 CCGGCAGATC 0.895712 -114 GCGGTGCCCACGGGCCCGTTCGCCGCGATAA 54 232 0 CGGGCCGTTC 0.938661 -69 TACGAGTAGGCTGGCCCGGTTACGACCGCGG 58 150 1 CTGGCCGGTT 0.525832 -81 CGCCCGAGCGCGGGGCCGGTGGACCTACGAC 59 158 1 CGGGCCGGTG 0.734012 -143 CCCGGTCCTTCTGGACCGATCTAGCGTTGCG 59 214 0 CTGGCCGATC 0.943052 -87 TCCAGAAGGACCGGGTCGATCGGCGCGCCGG 59 230 1 CCGGTCGATC 0.896811 -71 AGCCCGTATCCGGGTCCGGTGCTCCCCGGCG 59 255 0 CGGGCCGGTG 0.734012 -46 AATCCGGTATCCGGGTAGATCATGATCGACA 62 57 1 CCGGTAGATC 0.672311 -244 TCCGCCCCACCAGGGCAGATCAACCCATGTC 62 84 0 CAGGCAGATC 0.381289 -217 AGGGATGGTCCTGGCTGGCTCCTCCTACCGT 62 252 1 CTGGTGGCTC 0.590047 -49 CTGGTATGGACTGGCCCGTTCCGGGCCGCCA 65 38 0 CTGGCCGTTC 0.960681 -123 CACCCGTGATCCGGATGGTTCCGCTCGGGCC 66 88 1 CCGGTGGTTC 0.891766 -119 AACCCAGACCCTGGACCGTTGCCTGGAATCG 68 33 1 CTGGCCGTTG 0.802433 -129 AGGTATGGTCCCAGTCCGTTCCCTGCCCAAA 73 169 0 CCAGCCGTTC 0.790105 -47 GTTGCTCTAACCGCTCGGCTCACCGGTGCTA 75 12 1 CCGCCGGCTC 0.742956 -242 **** ****** Masking position 8 Map Score: 9.48181 Number of sites scoring better than the average of aligned sites = 624 Number in coding regions = 588 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 39 Fraction of orfs with sites within 600 bp upstream = 0.00626405