AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i234_bsub_mtub_300.orf -o234_bsub_mtub_300.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.55 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.55 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 ykoG 300 similar to two-component response regulator [YkoH] #2 phoP 211 two-component response regulator #3 citH 43 malate dehydrogenase #4 citC 163 isocitrate dehydrogenase #5 citZ 300 citrate synthase II #6 phoP 141 phoP #7 Rv1033c 181 hypothetical protein Rv1033c #8 Rv1034c 67 hypothetical protein Rv1034c #9 Rv1035c 33 hypothetical protein Rv1035c #10 Rv1036c 110 hypothetical protein Rv1036c #11 Rv1037c 26 hypothetical protein Rv1037c #12 Rv1038c 145 hypothetical protein Rv1038c #13 PPE 76 PPE #14 PE 300 PE #15 mtrB 49 mtrB #16 mtrA 69 mtrA #17 tmk 96 tmk #18 sahH 104 sahH #19 Rv3252c 108 hypothetical protein Rv3252c #20 Rv3253c 90 hypothetical protein Rv3253c Motif number 1 TCTGCTAACAGTCTGCCAGGAATCGCCAAA 6 65 0 GTCTGCCAGG 0.891861 -77 AAGCCCGACATCCCGCCCGGTCACCTTTTC 7 67 1 TCCCGCCCGG 0.933601 -115 CTGGCTTAAGGCCCGCGCCGTCAATTACAA 10 13 1 GCCCGCGCCG 0.97644 -98 CCAACCGGTGTGCGGCCACGTTGTAATTGA 10 33 0 TGCGGCCACG 0.903188 -78 CTCCTGAGTCGTCGGGCCGGG 11 2 0 GTCGGGCCGG 0.936942 -25 GTCATAACCTGTCCGCCACGCGGCCACCAC 12 63 1 GTCCGCCACG 0.954901 -83 AGCGGCTGTGATCGGCGCGGTGGTGGCCGC 12 82 0 ATCGGCGCGG 0.967771 -64 CAGACGTACGGGCGGCCACGCTCAACCAAC 13 15 1 GGCGGCCACG 0.985859 -62 AAATGAGACGCGCGGCGCGCGGATTCTAGG 14 38 0 CGCGGCGCGC 0.893813 -263 CCGCCATGTCAGCCGCCAAGACCTTGTTAA 14 105 1 AGCCGCCAAG 0.806121 -196 CGTAACGCTAACCGGCCAAGCCTCCACAGT 14 196 0 ACCGGCCAAG 0.825993 -105 AACACACAGGGTCGGCCCGGGGTGCTAGCG 14 250 1 GTCGGCCCGG 0.992575 -51 GGGTGCTAGCGGCCGGCAGGTTTCACACAC 14 269 1 GGCCGGCAGG 0.903087 -32 CTGCATCGTCGCCGGCGCGGA 15 2 0 GCCGGCGCGG 0.992409 -48 GATGCTAAGGAGCGGCGCCG 15 40 1 AGCGGCGCCG 0.968986 -10 GTGCCTCCCACCCGCGAGCAGACGCAAAA 17 10 1 ACCCGCGAGC 0.591437 -87 CCCTGTCGGTGGCGGCGCGAGCAGACGCAA 17 70 0 GGCGGCGCGA 0.898513 -27 GGCGCGGCCCTGTCGGTGGCGG 17 85 0 CGCGGCCCTG 0.873766 -12 GCCGCCGTCGGTCAGCCCCGCAGG 18 5 0 GTCAGCCCCG 0.820828 -100 AGGCTAAGTAGCCCGCTCGGATCCCTGTGA 18 59 1 GCCCGCTCGG 0.88023 -46 TTTGTAAATACGCGGCGAAGCTAGT 19 6 0 CGCGGCGAAG 0.870716 -103 GTACTGGGTACTCTGCGAGGATGACGGGTC 20 37 0 CTCTGCGAGG 0.699527 -54 ********** Masking position 5 Map Score: 29.1473 Number of sites scoring better than the average of aligned sites = 1570 Number in coding regions = 1481 Number in noncoding regions = 89 Number of orfs with sites within 600 bp upstream = 65 Fraction of orfs with sites within 600 bp upstream = 0.0104401 Motif number 2 ATTATAATTCCCCGACATCCTATTTCTCTA 2 178 0 CCCGACATCC 0.965037 -34 CCGGTCCACCGGGGGCTCCG 7 1 1 CCGGTCCACC 0.953533 -181 GCTCCGTATACCCGGAAACCGAGATCCGCT 7 25 1 CCCGGAAACC 0.924065 -157 ACCGCCGAAGCCCGACATCCCGCCCGGTCA 7 60 1 CCCGACATCC 0.965037 -122 CGACATCCCGCCCGGTCACCTTTTCAGGCC 7 72 1 CCCGGTCACC 0.964136 -110 CCAGCACAATCCCGTCATCGTTGTCGACGA 8 40 0 CCCGTCATCG 0.881085 -28 CGACCCGTCCAGCGCAATGCGGC 9 21 0 CCCGTCCAGC 0.95353 -13 CTGTCCGCCACGCGGCCACCACCGCGCCGA 12 71 1 CGCGGCCACC 0.985019 -75 AGTGTGCTAGCCCGGGCACCAGATCACACC 14 77 1 CCCGGGCACC 0.975518 -224 CGTCTGCTCGCGCCGCCACCGACAGGGCCG 17 73 1 CGCCGCCACC 0.875513 -24 CCCTACGCGACCCGTCATCCTCGCAGAGTA 20 29 1 CCCGTCATCC 0.984483 -62 GCACCCGTCCTCTCGCACTCGTT 20 78 0 CCCGTCCTCT 0.916973 -13 ********** Masking position 1 Map Score: 17.1378 Number of sites scoring better than the average of aligned sites = 270 Number in coding regions = 220 Number in noncoding regions = 50 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 3 GTGGGGAAGTGCAGGTTGACCGAATGGTGTATTTTTTTG 1 82 0 GCTTACGATG 0.911833 -219 TCTGCGAGTGTATTCACGGCGCGCCGTGGATTGAGC 6 8 1 GTTTACGCCG 0.923904 -134 AACGGTCCAAGCTGATTTGGCGATTCCTGGCAGACTGTT 6 50 1 GCTTGGGATG 0.887841 -92 ATTCCTGGCAGACTGTTAGCAGACTACTGGCAACGAGCT 6 72 1 GATTGCGATG 0.936133 -70 CGGCGGTTTTGCCGCATTGCGCTGGACGGGT 9 3 1 GCTTGCGCCG 0.996781 -31 TTTCCGTGGAGTTATTTGGCTGAATTTCGTTGTTGGTTG 13 37 0 GTTTGCGACG 0.984875 -40 CGCGACTGTGGAGGCTTGGCCGGTTAGCGTTACGCCAAT 14 192 1 GATTGCGGCG 0.933258 -109 GGCCGACCCTGTGTGTTTGCGTACGGCTGCCTGTGGATT 14 228 0 GTTTGCTATG 0.904823 -73 CGGCGCCGCTCCTTAGCATCGCTGCGCTCTGCATCG 15 24 0 GCTTGCTCCG 0.992917 -26 ATGAAAATGGGCGATTTTGCGTCTGCTCGCGGGTGGGAG 17 15 0 GCTTGCTCCG 0.992917 -82 GACGAAAAGGGCGATTTTGCGTCTGCTCGCGCCGCCACC 17 54 1 GCTTGCTCCG 0.992917 -43 ATCCGAGCGGGCTACTTAGCCTAGGTACGCTCTTGCAGT 18 42 0 GCTTGCTACG 0.990518 -63 ** ** ** ** ** Masking position 7 Map Score: 16.2329 Number of sites scoring better than the average of aligned sites = 315 Number in coding regions = 289 Number in noncoding regions = 26 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 4 AGAAAGGCTTGCTTAATACAGCCTTTCTCTTT 2 20 1 GCTAATCAGC 0.91574 -192 AACCTCATTGACGCAAGCCAGCCTCCAATGGT 4 14 0 ACGAAGCAGC 0.959218 -150 GACCCGTCCAGCGCAATGCGGCAAAACCGCCG 9 11 0 GCGAATCGGC 0.977096 -23 ACGGCGCGGGCCTTAAGCCAGCT 10 2 0 CCTAAGCAGC 0.915434 -109 ACTTCGACCTGCTAAAGTCGGCGCG 10 96 1 GCTAAGCGGC 0.895452 -15 GCGTGGCCGCCCGTACGTCTGCCGC 13 4 0 CCGACGCTGC 0.936616 -73 TCAACCAACAACGAAATTCAGCCAAATAACTC 13 36 1 ACGAATCAGC 0.883407 -41 CGGATTCTAGGCGAATGACGGCTCTTTCGCAC 14 17 0 GCGATGCGGC 0.965026 -284 GCCCGGGCTAGCACACTTCGGCACACAAATGA 14 62 0 GCAACTCGGC 0.804064 -239 GTTTTTTAACGTTTACGTCAGCATCCTTAACA 14 129 0 GTTACGCAGC 0.765312 -172 CTGTGTGTTTGCGTACGGCTGCCTGTGGATTG 14 227 0 GCGACGCTGC 0.979542 -74 TGCGGGGCTGACCGACGGCGGCTACAGTGACT 18 13 1 ACCACGCGGC 0.894484 -92 *** *** **** Masking position 5 Map Score: 11.5207 Number of sites scoring better than the average of aligned sites = 569 Number in coding regions = 537 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 5 TATTTTTTTGTGCGCTTAATCGATCTATGAC 1 61 0 TGCGCTAATC 0.853033 -240 GCGTTTCTTCCGCGCTTTATCTCAGCCAAAA 1 159 1 CGCGCTTATC 0.575574 -142 CATTTTACTGGCTGCTGGAACTAAAACCCTT 5 169 0 GCTGCTGAAC 0.937178 -132 TTGGACCGTTGCCGCTCAATCCACGGCGCGC 6 29 0 GCCGCTAATC 0.886692 -113 GAAACCGAGATCCGCTTTCTCACCGCCGAAG 7 39 1 TCCGCTTCTC 0.924948 -143 CAACTGCATGTGCGCTTGCACAGGACTTGAG 7 148 1 TGCGCTGCAC 0.974096 -34 ACCTGGGCCTTGTGCTCAAACTCGACCGGC 8 10 0 TGTGCTAAAC 0.73268 -58 ATGACGGGATTGTGCTGGATCACACT 8 52 1 TGTGCTGATC 0.917115 -16 GCCGATCACAGCCGCTAGAACTTCAACAACG 12 96 1 GCCGCTGAAC 0.969318 -50 GCTGCTGTCTCCTTGTCTCGA 12 135 0 GCTGCTTCTC 0.855704 -11 TGTGCCGAAGTGTGCTAGCCCGGGCACCAGA 14 69 1 TGTGCTGCCC 0.845291 -232 AAACCTGCCGGCCGCTAGCACCCCGGGCCGA 14 261 0 GCCGCTGCAC 0.980657 -40 CGATTTTGCGTCTGCTCGCGCCGCCACCGAC 17 65 1 TCTGCTGCGC 0.87848 -32 GCACCCGTCCTCTCGCACTCGTTGTGAC 20 73 0 TCCTCTGCAC 0.751774 -18 ****** **** Masking position 6 Map Score: 11.7686 Number of sites scoring better than the average of aligned sites = 848 Number in coding regions = 782 Number in noncoding regions = 66 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 6 TTTTTTTGGTAAAATAAAAAACTGCATATCCTA 1 16 1 AAAAAAAAAT 0.936745 -285 TTATGATGTTAAAATAAAAAATTGTATACGGAA 1 206 0 AAAAAAAAAT 0.936741 -95 TGCTTTCGCTAAAATAAAATCATGAAACATGTT 2 131 1 AAAAAAAATT 0.971458 -81 TCTTATATAGAAAATAAAATGATTTTTCCTAAC 4 92 0 AAAAAAAATT 0.971458 -72 CTATATAAGAAAAATAAAATGTTTTCTAAATAT 4 115 1 AAAAAAAATT 0.971356 -49 ACAGAATGGAAAAAAAAAATTATAGGTAAACAT 5 49 1 AAAAAAAATT 0.971458 -252 CTCTCCCCCAAAAAGAAAATGCTTACATTTTAC 5 192 0 AAAAAAAATT 0.971462 -109 **** ***** * Masking position 7 Map Score: 8.94977 Number of sites scoring better than the average of aligned sites = 82 Number in coding regions = 52 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 7 GCGGAAGAAACGCGCTTTGATCCCTTATGACCCGATC 1 135 0 CCCTTTTCCA 0.948239 -166 AAAACAGCACCCCTAGTGCTTTCCGTATACAATTTTT 1 186 1 CCAGTGTCCA 0.88596 -115 TGAGGTTAGCCTCTTGTTCAGACATCAAAATTGGGTT 4 39 1 CCTGTTGCAA 0.964698 -125 TTAAGTAAGCCTCATGTTTTTACAACACTCTTAAAGG 5 245 1 CCTGTTTCAA 0.90942 -56 CCCGCCCGGTCACCTTTTCAGGCCGAAGTAACTACAT 7 78 1 CCTTTTGCCA 0.97483 -104 GGACATCTCACTCGTTTGAGGCCAGCAATTAACCGTT 12 24 1 CCTTTGGCAA 0.950109 -122 CGCCGCGCGTCTCATTTGTGTGCCGAAGTGTGCTAGC 14 51 1 CCTTTGTCCA 0.930106 -250 CCGTGTGGTGCGCCAGTTTTGTCCCGATGTGGTGACA 16 41 1 CCAGTTGCCA 0.957646 -29 GACGCAAAATCGCCCTTTTCGTCATGAAAATGGGCGA 17 40 0 CCCTTTGCAA 0.963257 -57 AGCCTAGGTACGCTCTTGCAGTCACTGTAGCCGCCGT 18 27 0 CCCTTGGCAG 0.821973 -78 CGTCCTCTCGCACTCGTTGTGACCGCACAGTACTGGG 20 59 0 CCCGTTGCCA 0.985276 -32 * * **** * ** * Masking position 7 Map Score: 8.46053 Number of sites scoring better than the average of aligned sites = 136 Number in coding regions = 114 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 25 Fraction of orfs with sites within 600 bp upstream = 0.00401542 Motif number 8 CGATCTGGATAATACCAGCGTGGGGAAGTGCAG 1 107 0 AATCCACTGG 0.980581 -194 CTTTCGCTAAAATAAAATCATGAAACATGTTAA 2 133 1 AATAAACTGA 0.694905 -79 TCTAAATATGAATTACATACTGGGAGGTTTTTA 4 139 1 AATACAATGG 0.972112 -25 TTTTCGGGGAAATCACAGAATGGAAAAAAAAAA 5 35 1 AATACAATGG 0.972112 -266 AGCTTTCAGGAATTACACAATGACTGTGAAGGT 6 107 1 AATACAATGA 0.888552 -35 CCGCGCCGTCAATTACAACGTGGCCGCACACCG 10 25 1 AATACACTGG 0.98891 -86 TAGTCGTTCAGATAACAACGTGGCCACACACCA 10 60 0 GATACACTGG 0.95949 -51 TCTATTGTCAAATCCCAACGTGGTGTGGCTCAT 19 71 1 AATCCACTGG 0.980581 -38 *** *** * *** Masking position 7 Map Score: 7.47664 Number of sites scoring better than the average of aligned sites = 53 Number in coding regions = 48 Number in noncoding regions = 5 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 9 ACGGAAAGCACTAGGGGTGCTGTTTTGGCTG 1 181 0 CTGGGGTGCT 0.979951 -120 AGAACCATTGGAGGCTGGCTTGCGTC 4 6 1 CATGGAGGCT 0.955933 -158 CCGGTCCACCGGGGGCTCCGTATACCC 7 7 1 CACGGGGGCT 0.979011 -175 TCGGTCGCGACTGTGGAGGCTTGGCCGGTTA 14 187 1 CTTGGAGGCT 0.968831 -114 ACAGGGTCGGCCCGGGGTGCTAGCGGCCGGC 14 255 1 CCGGGGTGCT 0.9814 -46 CCTGCGGGGCTGACCGACGGC 18 1 1 CCGCGGGGCT 0.97381 -104 TTTCATCCTTCTTTGGGGGCTCACAGGGATC 18 78 0 CTTGGGGGCT 0.9913 -27 ** ******** Masking position 11 Map Score: 6.58141 Number of sites scoring better than the average of aligned sites = 21 Number in coding regions = 13 Number in noncoding regions = 8 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 10 ATAGAGAAATAGGATGTCGGGGAATTATAA 2 177 1 AGGATGTCGG 0.990671 -35 GGTGAGAAAGCGGATCTCGGTTTCCGGGTA 7 33 0 CGGATCTCGG 0.962118 -149 GTGACCGGGCGGGATGTCGGGCTTCGGCGG 7 61 0 GGGATGTCGG 0.984231 -121 GTCGTCGACAACGATGACGGGATTGTGCTG 8 39 1 ACGATGACGG 0.960664 -29 GGATTCTAGGCGAATGACGGCTCTTTCGCA 14 18 0 CGAATGACGG 0.946863 -283 GTACTCTGCGAGGATGACGGGTCGCGTAGG 20 30 0 AGGATGACGG 0.990713 -61 ********** Masking position 5 Map Score: 6.13406 Number of sites scoring better than the average of aligned sites = 139 Number in coding regions = 129 Number in noncoding regions = 10 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 11 TCCCTTATGACCCGATCTGGATAATACCAG 1 122 0 CCCGATCTGG 0.639521 -179 GTATTCACGGCGCGCCGTGGATTGAGCGGC 6 20 1 CGCGCCGTGG 0.971048 -122 GTATACGGAGCCCCCGGTGGACCGG 7 6 0 CCCCCGGTGG 0.949688 -176 CCACACACCAACCGGTGTGCGGCCACGTTG 10 40 0 ACCGGTGTGC 0.757313 -71 GCGCGGTGGTGGCCGCGTGGCGGACAGGTT 12 68 0 GGCCGCGTGG 0.937472 -78 GGCTGTGATCGGCGCGGTGGTGGCCGCGTG 12 79 0 GGCGCGGTGG 0.971905 -67 CGCCAGGTGCGAAAGAGCCG 14 1 1 CGCCAGGTGC 0.83206 -300 ACAAATGAGACGCGCGGCGCGCGGATTCTA 14 40 0 CGCGCGGCGC 0.878425 -261 CGGCTGACATGGCGGTGTGATCTGGTGCCC 14 90 0 GGCGGTGTGA 0.794465 -211 ACAGGGTCGGCCCGGGGTGCTAGCGGCCGG 14 255 1 CCCGGGGTGC 0.976846 -46 CTGCATCGTCGCCGGCGCGGA 15 2 0 GCCGGCGCGG 0.913416 -48 AGCAAGAAACGCCCGTGTGGTGCGCCAGTT 16 29 1 GCCCGTGTGG 0.94685 -41 CCAGTTTTGTCCCGATGTGGTGACACC 16 53 1 CCCGATGTGG 0.951437 -17 CAAATCCCAACGTGGTGTGGCTCATGAGGA 19 79 1 CGTGGTGTGG 0.809517 -30 ********** Masking position 9 Map Score: 13.851 Number of sites scoring better than the average of aligned sites = 574 Number in coding regions = 527 Number in noncoding regions = 47 Number of orfs with sites within 600 bp upstream = 27 Fraction of orfs with sites within 600 bp upstream = 0.00433665 Motif number 12 ATTTGACCATCCTCTCCCGTCCCTATATGAA 1 280 0 CCTCTCCGTC 0.969725 -21 TTGAACGTTACCTTCACAGTCATTGTGTAAT 6 118 0 CCTTCCAGTC 0.964323 -24 CGCTTTCTCACCGCCGAAGCCCGACATCCCG 7 51 1 CCGCCAAGCC 0.896803 -131 CGCCCGGTCACCTTTTCAGGCCGAAGTAACT 7 80 1 CCTTTCAGGC 0.731599 -102 GCTCCCGTATCCTCTCAAGTCCTGTGCAAGC 7 161 0 CCTCTAAGTC 0.911423 -21 TGGCTTAAGGCCCGCGCCGTCAATTACAACG 10 14 1 CCCGCCCGTC 0.811189 -97 GTGTCCTCCTGAGTCGTCGGGCCGG 11 12 0 CCTCCGAGTC 0.979824 -15 ACCGGCCAAGCCTCCACAGTCGCGACCGAAA 14 185 0 CCTCCCAGTC 0.992767 -116 TCTGCTCGCGCCGCCACCGACAGGGCCGCGC 17 75 1 CCGCCCCGAC 0.908407 -22 TGCCAAACCTCCTCATGAGCCACACCACGTT 19 87 0 CCTCAGAGCC 0.78104 -22 ***** ***** Masking position 2 Map Score: 3.79676 Number of sites scoring better than the average of aligned sites = 427 Number in coding regions = 371 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 13 AAGCGCGGAAGAAACGCGCTTTGATCCCTT 1 146 0 GAAACGCGCT 0.886014 -155 TTTTCATATAGGGACGGGAGAGGATGGTCA 1 278 1 GGGACGGGAG 0.960842 -23 GACTTGAGAGGATACGGGAGC 7 171 1 GATACGGGAG 0.91743 -11 GCGGCAGACGTACGGGCGGCCACGCTCA 13 9 1 CGTACGGGCG 0.887347 -68 GCACACAAATGAGACGCGCGGCGCGCGGAT 14 44 0 GAGACGCGCG 0.990946 -257 CGAAAGGCATGGGACGCCCGACGTTTACGG 14 160 0 GGGACGCCCG 0.974057 -141 AATCAAGCAAGAAACGCCCGTGTGGTGCGC 16 24 1 GAAACGCCCG 0.960978 -46 TTTTCATGACGAAAAGGGCGATTTTGCGTC 17 47 1 GAAAAGGGCG 0.886014 -50 ********** Masking position 4 Map Score: 4.32071 Number of sites scoring better than the average of aligned sites = 251 Number in coding regions = 226 Number in noncoding regions = 25 Number of orfs with sites within 600 bp upstream = 13 Fraction of orfs with sites within 600 bp upstream = 0.00208802 Motif number 14 AAGCAAGCCTTTCTCTCTTTTTA 2 4 0 TTCTCTCTTT 0.836564 -208 AATACAGCCTTTCTCTTTTTACTATAAATG 2 34 1 TTCTCTTTTT 0.890978 -178 ATTCCGACAATTCGCCTTTTACATCATTTT 2 97 0 TTCGCCTTTT 0.947633 -115 GACATCCTATTTCTCTATTTTATGTCATCT 2 165 0 TTCTCTATTT 0.562997 -47 GTCTCTCTTCTCCTTTATGGCTAGTTT 3 27 0 TTCTCCTTTA 0.892412 -17 TTCAATAAATTTCCCCTTTAAGAGTGTTGT 5 266 0 TTCCCCTTTA 0.802156 -35 ATATAACATCTCCTTTTCAATAAATTT 5 284 0 ATCTCCTTTT 0.921253 -17 ATCCCGCCCGGTCACCTTTTCAGGCCGAAG 7 76 1 GTCACCTTTT 0.825288 -106 CGAGTGAGATGTCCCCCTTTGTCCGCA 12 8 0 GTCCCCCTTT 0.889744 -138 GCTGCTGTCTCCTTGTCTCGAAGTCG 12 130 0 GTCTCCTTGT 0.901335 -16 CCATTGCTCCTTGTGTGTGAAACC 14 287 0 TGCTCCTTGT 0.687753 -14 CAGACGCAAAATCGCCCTTTTCGTCATGAA 17 49 0 ATCGCCCTTT 0.781735 -48 ********** Masking position 8 Map Score: 3.79326 Number of sites scoring better than the average of aligned sites = 1034 Number in coding regions = 818 Number in noncoding regions = 216 Number of orfs with sites within 600 bp upstream = 257 Fraction of orfs with sites within 600 bp upstream = 0.0412785 Motif number 15 TATTAAGCAAGCCTTTCTCTCTTTTTA 2 8 0 GCCTTTCTCT 0.942846 -204 GCTTAATACAGCCTTTCTCTTTTTACTATA 2 30 1 GCCTTTCTCT 0.942846 -182 TGAGATGTCCCCCTTTGTCCGCA 12 4 0 CCCTTTGTCC 0.814182 -142 GGCGTCCCATGCCTTTCGGTCGCGACTGTG 14 172 1 GCCTTTCGGT 0.955032 -129 GCGTACGGCTGCCTGTGGATTGGCGTAACG 14 219 0 GCCTGTGGAT 0.865867 -82 CCCGGGCCGACCCTGTGTGTTTGCGTACGG 14 241 0 CCCTGTGTGT 0.971726 -60 CCATTGCTCCTTGTGTGTGAAACCTGCC 14 283 0 CCTTGTGTGT 0.7933 -18 GGCGCGGCCCTGTCGGTGGCGGCGCGA 17 80 0 CCCTGTCGGT 0.971171 -17 ********** Masking position 6 Map Score: 1.16922 Number of sites scoring better than the average of aligned sites = 219 Number in coding regions = 187 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 36 Fraction of orfs with sites within 600 bp upstream = 0.0057822