AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i293_bsub_mtub_100.orf -o293_bsub_mtub_100.ace -a/home/amcguire/genomes/ORF_bsub.txt -z/home/amcguire/genomes/bsub.fna -g0.55 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.55 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 gcaD 192 UDP-N-acetylglucosamine pyrophosphorylase #2 prs 22 phosphoribosyl pyrophosphate synthetase #3 ctc 84 general stress protein #4 spoVC 106 thermosensitive mutant blocks spore coat formation (stage V sporulation) #5 yacA 103 similar to cell-cycle protein #6 ftsH 97 cell-division protein and general stress protein (class III heat-shock) #7 pabB 166 para-aminobenzoate synthase (subunit A) #8 ybbP 160 alternate gene name: ybbQ; similar to hypothetical proteins #9 yyaF 126 similar to hypothetical proteins #10 rplY 216 rplY #11 prsA 91 prsA #12 glmU 254 glmU #13 Rv1112 131 hypothetical protein Rv1112 #14 mrsA 124 mrsA #15 ftsH 66 ftsH #16 Rv3627c 137 hypothetical protein Rv3627c Motif number 1 AATTAAAAAAGGACCGCCGGCAAAAGGCTTA 1 50 0 GGACGCCGGC 0.89784 -143 AGCACAAAAGACGTAACCGCGGGAGGGTTAC 4 22 0 ACGTACCGCG 0.61033 -85 TCGGCAGCCTGCTTCCGAGATG 6 2 1 CGGCGCCTGC 0.701186 -96 AAAAACTCCCGGCGAACCGGGAGTTTTGGCT 7 15 0 GGCGACCGGG 0.805352 -152 CATCAAATATGCCATGTCTGCGACGAATGTT 7 58 1 GCCAGTCTGC 0.60386 -109 GATAGCTGTGCCCCAACCGTGCGGACAA 10 8 0 CCCCACCGTG 0.495444 -209 CCATGGGTTAGCCTAGCCGGGCGTCACGGCG 10 78 1 GCCTGCCGGG 0.982734 -139 GTCACGGCGAGGGTGGTCGGCGGTCTACAGC 10 100 1 GGGTGTCGGC 0.956441 -117 GGCGGTCTACAGCAGGCCGGCAGAACACCGT 10 118 1 AGCAGCCGGC 0.950866 -99 GGGTCGCGACAGCTTGTCGGCCTCCGTCGAT 10 150 0 AGCTGTCGGC 0.934943 -67 GCTGTCGCGACCCTGGCCGTGCCCCCAAACG 10 168 1 CCCTGCCGTG 0.804711 -49 AAACGAGGTAACCGAGCCACCCAGGAGCGAC 10 194 1 ACCGGCCACC 0.884775 -23 ATTTGTCGCCGGGTAGCCGGGATGCGACT 11 9 0 GGGTGCCGGG 0.965233 -83 CATGGTACGTAGCGCACCGCCCGGATTTGTC 11 33 0 AGCGACCGCC 0.888421 -59 ACGCGGGTGACGCGCGCCAGG 12 1 0 CGCGGCCAGG 0.882173 -254 GCGCGCGTCACCCGCGTCGGGTTTTCCGGCG 12 15 1 CCCGGTCGGG 0.96138 -240 TGTTGATGTGGCCGGACCGGATAAAGGGCCG 12 53 0 GCCGACCGGA 0.718227 -202 AGCACAGTCAACGCTGTCGCCGTCTACCCAC 12 108 0 ACGCGTCGCC 0.859636 -147 GACGGTGTCAACGCCGTCAGCACAGTCAACG 12 126 0 ACGCGTCAGC 0.670103 -129 CCTTGAAGCTCCGTCGCCAGGACTCGAACCT 12 227 0 CCGTGCCAGG 0.772461 -28 CGGCGGTACAGGCAAGTCACCGCTCGATTCA 13 27 0 GGCAGTCACC 0.474491 -105 AGCGCAGCGGGCGAGGTCGGCGGTACAGGCA 13 44 0 GCGAGTCGGC 0.941125 -88 ACACACGTCGACCGTACCGGCAATGGCGCCG 13 76 1 ACCGACCGGC 0.968435 -56 TTAAGGCGAGGCGGTGCCGCCTTCGGCGCCA 13 99 0 GCGGGCCGCC 0.988549 -33 CAAACATGCACGCTTGTCGCCCGAAAGTGAT 14 12 0 CGCTGTCGCC 0.893229 -113 TGTTTGTGTGCGCTCGTCGGCGTGTCGGTGA 14 37 1 CGCTGTCGGC 0.953734 -88 GTGGATATGTGCGCAGCCGTCAACTGTGAAA 14 94 1 GCGCGCCGTC 0.916583 -31 CGATCATCGGCCGTGCCGGCCAGGTCCTTC 15 47 0 GCCGGCCGGC 0.971618 -20 CGACGCTGCCACGGTACCGGCTCGACTAGGG 16 73 0 ACGGACCGGC 0.950047 -65 CGGTACCGTGGCAGCGTCGCCCGGCCGGTTC 16 85 1 GCAGGTCGCC 0.790648 -53 GTCCCATTCTGCCGAACCGGCCGGGCGACGC 16 98 0 GCCGACCGGC 0.661204 -40 **** ****** Masking position 8 Map Score: 42.6064 Number of sites scoring better than the average of aligned sites = 4952 Number in coding regions = 4660 Number in noncoding regions = 292 Number of orfs with sites within 600 bp upstream = 192 Fraction of orfs with sites within 600 bp upstream = 0.0308384 Motif number 2 CAGCCCTTTCAGCAGTCCTTGCTTTTTGGTTA 1 15 0 AGCGTCTTGC 0.815692 -178 GTGCAAACTGCAGAGCCTATGCTTCTTCTTTG 5 14 1 CAGGCCATGC 0.929031 -90 CATATCCTAACACTTTCAACCCCTCCAAGCAA 5 43 0 CACTTCACCC 0.817642 -61 TTCCAAGAATAACATTCGTCGCAGACATGGCA 7 67 0 AACTTCTCGC 0.751237 -100 AAAAGAGCAAAGCGGCTAACGCGCT 8 4 0 AGCGCTACGC 0.878063 -157 TGCTGTAGACCGCCGACCACCCTCGCCGTGAC 10 100 0 CGCGACACCC 0.917723 -117 GCGCACCGCCCGGATTTGTCGCCGGGTAGCCG 11 21 0 CGGTTTTCGC 0.766424 -71 CGCGCTGCCCTCGCCGTTTGGGAT 11 78 0 CGCGCCTCGC 0.994354 -14 GAAAACCCGACGCGGGTGACGCGCGCCAGG 12 9 0 CGCGGTACGC 0.809176 -246 TCAACGCTGTCGCCGTCTACCCACCGGCCCCA 12 100 0 CGCGTCACCC 0.97245 -155 ACGCCGTCAGCACAGTCAACGCTGTCGCCGTC 12 115 0 CACGTCACGC 0.979534 -140 TGACTTTAGACGGTGTCAACGCCGTCAGCACA 12 133 0 CGGGTCACGC 0.989699 -122 ACCCTCCTTGAAGCTCCGTCGCCAGGACTCGA 12 231 0 AAGTCCTCGC 0.81607 -24 TTGCCTGTACCGCCGACCTCGCCCGCTGCGCT 13 43 1 CGCGACTCGC 0.968201 -89 GTGCCGCCTTCGGCGCCATTGCCGGTACGGTC 13 85 0 CGGGCCTTGC 0.96344 -47 CCGTGCCGGCCAGGTCCTTCCCGATACACGCA 15 35 0 CAGTCCTCCC 0.841512 -32 TCTGATCTGAAGGAGCCGACGC 16 1 0 AGGGCCACGC 0.977444 -137 GGACAACGGGCAGGTCCAATGCGTCCGTGGAC 16 40 1 CAGTCCATGC 0.805944 -98 *** *** **** Masking position 12 Map Score: 24.3962 Number of sites scoring better than the average of aligned sites = 1553 Number in coding regions = 1469 Number in noncoding regions = 84 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 3 AAAGGCTTATGTCAGCCCTTTCAGCAGTCCTT 1 27 0 GTCAGCCTTC 0.931667 -166 ATTCAGCACCATCCTCTTGTCGT 3 72 0 TTCAGCCCTC 0.967318 -13 AGTGAAATGTGCCAGCCCTCTCAGCCCGCAAA 8 36 0 GCCAGCCTTC 0.97166 -125 CGTCGGGTTTTCCGGCGCCTTATCCGGCCCTT 12 29 1 TCCGGCCCTA 0.96984 -226 CGGCGCCTTATCCGGCCCTTTATCCGGTCCGG 12 41 1 TCCGGCCTTA 0.889278 -214 CTTTATCCGGTCCGGCCACATCAACAAGGGTA 12 58 1 TCCGGCACTC 0.925124 -197 TGTCAACGCCGTCAGCACAGTCAACGCTGTCG 12 120 0 GTCAGCCATC 0.843518 -135 CGGCGCCATTGCCGGTACGGTCGACGTGTGTC 13 75 0 GCCGGTCGTC 0.917055 -57 CGGTGCCGCCTTCGGCGCCATTGCCGGTACGG 13 87 0 TTCGGCCCTT 0.927974 -45 GGCCGTGCCGGCCAGGTCCTTCCCGATACACG 15 37 0 GCCAGGCCTC 0.947202 -30 GCGTCGGCTCCTTCAGATCAGAGT 16 3 1 GTCGGCCCTC 0.99278 -135 CCCTAGTCGAGCCGGTACCGTGGCAGCGTCGC 16 73 1 GCCGGTCCTG 0.916932 -65 CTCCTGCCTTTCCGGTCCCATTCTGCCGAACC 16 111 0 TCCGGTCCTT 0.877428 -27 ****** ** ** Masking position 11 Map Score: 15.4313 Number of sites scoring better than the average of aligned sites = 792 Number in coding regions = 743 Number in noncoding regions = 49 Number of orfs with sites within 600 bp upstream = 52 Fraction of orfs with sites within 600 bp upstream = 0.00835207 Motif number 4 GACAAGAGGATGGTGCTGAAT 3 74 1 TGGTGCTGAA 0.694133 -11 CTTTGCTTGGAGGGGTTGAAAGTGTTAGGA 5 41 1 AGGGGTTGAA 0.470028 -63 TTGTGCTTACTGTGGGAGGAGGTAAGGA 6 80 1 TGTGGGAGGA 0.656801 -18 CGCCCGGATTTGTCGCCGGGTAGCCGGGAT 11 17 0 TGTCGCCGGG 0.8745 -75 CCTCGCCGTTTGGGATCGAATTGGATTACC 11 64 0 TGGGATCGAA 0.699118 -28 GGGCCGGATAAGGCGCCGGAAAACCCGACG 12 29 0 AGGCGCCGGA 0.977735 -226 GGACCGGATAAAGGGCCGGATAAGGCGCCG 12 41 0 AAGGGCCGGA 0.725568 -214 CCCTTGTTGATGTGGCCGGACCGGATAAAG 12 58 0 TGTGGCCGGA 0.983182 -197 TCGGTTTGCGTGGGGCCGGTGGGTAGACGG 12 90 1 TGGGGCCGGT 0.948472 -165 GTTCGAGTCCTGGCGACGGAGCTTCAAGGA 12 229 1 TGGCGACGGA 0.939126 -26 ACCTGGGATGTGGGGGTGAATCGAGCGGTG 13 11 1 TGGGGGTGAA 0.913452 -121 GTACCGGCAATGGCGCCGAAGGCGGCACCG 13 89 1 TGGCGCCGAA 0.988516 -43 CATGCACGCTTGTCGCCCGAAAGTGATG 14 9 0 TGTCGCCCGA 0.800921 -116 CTCGTCGGCGTGTCGGTGAACCAACAGGCA 14 49 1 TGTCGGTGAA 0.729352 -76 TATCCACTCTTGGCAGCGAATATGCCTGTT 14 71 0 TGGCAGCGAA 0.857891 -54 TTCGGCAGAATGGGACCGGAAAGGCAGGAG 16 113 1 TGGGACCGGA 0.968678 -25 ********** Masking position 2 Map Score: 15.2998 Number of sites scoring better than the average of aligned sites = 1405 Number in coding regions = 1346 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 45 Fraction of orfs with sites within 600 bp upstream = 0.00722775 Motif number 5 AAAGAAGAAGCATAGGCTCTGCAGTTTGCACCAT 5 3 0 CAGCTGCTGC 0.997314 -101 TTGTCTTTTCCAGTGAACCTCCTTATAATTGCTCTAGGTTCA 9 50 1 CAGCTCCTAC 0.980915 -77 TAGGCTAACCCATGGCTACTGCATTGGGGAAATTCGATCCTT 10 51 0 CAGCTGCGGA 0.927379 -166 CGCTACGTACCATGGGTAATCCAATTCGATCCCAAACGGCGA 11 50 1 CAGATCCTGC 0.972877 -42 GAACCAAAATCAGAGGTGCTGCCGATTACACCACGACGGATT 12 176 0 CAGCTGCTAC 0.993163 -79 CCACTCTTGGCAGCGAATATGCCTGTTGGTTCACCGACACGC 14 56 0 CAGATGCTGC 0.990231 -69 CGATCATCGGCCGTGCCGGCCAGGTCCTTCCCGATA 15 41 0 CAGGTGCCAC 0.911103 -26 TCCACGGACGCATTGGACCTGCCCGTTGTCCCATGCACTCTG 16 29 0 CAGCTGCTGC 0.997316 -109 ** * **** * * * Masking position 2 Map Score: 5.52995 Number of sites scoring better than the average of aligned sites = 136 Number in coding regions = 125 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 6 TAGTCACATAACTCCCGTCTTCATAAACGG 4 73 0 ACTCCCGTCT 0.835598 -34 ATATAAAAAAACTCCCGGCGAACCGGGAGT 7 22 0 ACTCCCGGCG 0.961774 -145 TCCAAGAATAACATTCGTCGCAGACATGGC 7 68 0 ACATTCGTCG 0.895882 -99 CCTCGCCGTGACGCCCGGCTAGGCTAACCC 10 82 0 ACGCCCGGCT 0.831153 -135 ACCGCCGACCACCCTCGCCGTGACGCCCGG 10 94 0 ACCCTCGCCG 0.984929 -123 CAGCTTGTCGGCCTCCGTCGATAACGGTGT 10 142 0 GCCTCCGTCG 0.977303 -75 CGCGCTGCCCTCGCCGTTTGGGATCG 11 76 0 GCCCTCGCCG 0.97959 -16 GGCGCGCGTCACCCGCGTCGGGTTTTCCGG 12 14 1 ACCCGCGTCG 0.979036 -241 CCCTCCTTGAAGCTCCGTCGCCAGGACTCG 12 232 0 AGCTCCGTCG 0.851291 -23 CGCTGCGCTGACACACGTCGACCGTACCGG 13 66 1 ACACACGTCG 0.861392 -66 AGGCGGTGCCGCCTTCGGCGCCATTGCCGG 13 92 0 GCCTTCGGCG 0.952599 -40 ATGTTTGTGTGCGCTCGTCGGCGTGTCGGT 14 36 1 GCGCTCGTCG 0.971429 -89 GTCCGTGGACACCCTAGTCGAGCCGGTACC 16 62 1 ACCCTAGTCG 0.90919 -76 ********** Masking position 9 Map Score: 17.0901 Number of sites scoring better than the average of aligned sites = 316 Number in coding regions = 277 Number in noncoding regions = 39 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 7 TAGCTTAAGGCGTAACCCTCCCGCGGTTACG 4 11 1 CGAACCCTCC 0.954219 -96 TCGGCAGCCTGCTTCCGAGATG 6 2 1 CGCAGCCTGC 0.914454 -96 GACAAGCTGTCGCGACCCTGGCCGTGCCCCC 10 163 1 CGGACCCTGG 0.975631 -54 CTGGGTGGCTCGGTTACCTCGTTTGGGGGCA 10 187 0 CGTTACCTCG 0.879959 -30 AGTCGCATCCCGGCTACCCGGCGA 11 4 1 CGATCCCGGC 0.81453 -88 CGCGCTGCCCTCGCCGTTTGGGA 11 79 0 CGTGCCCTCG 0.954196 -13 CCTGGCGCGCGTCACCCGCGTCGGGTTTTC 12 10 1 CGCACCCGCG 0.985189 -245 CCACGCAAACCGATACCCTTGTTGATGTGGC 12 72 0 CGTACCCTTG 0.935421 -183 TTGCCTGTACCGCCGACCTCGCCCGCTGCGC 13 43 1 CGCGACCTCG 0.925038 -89 GAGCGGTAACCTGGACTTTCCAGC 15 4 1 CGTAACCTGG 0.965118 -63 CTAGTCGAGCCGGTACCGTGGCAGCGTCGCC 16 75 1 CGTACCGTGG 0.922349 -63 ACCGTGGCAGCGTCGCCCGGCCGGTTCGGCA 16 89 1 CGCGCCCGGC 0.966976 -49 ** ******** Masking position 7 Map Score: 12.4903 Number of sites scoring better than the average of aligned sites = 286 Number in coding regions = 258 Number in noncoding regions = 28 Number of orfs with sites within 600 bp upstream = 18 Fraction of orfs with sites within 600 bp upstream = 0.0028911 Motif number 8 ATATTTTTCTATGGATAAAAGGGATATTGGAGGCC 1 163 1 ATGGAAGGAT 0.946114 -30 ATGGTGCAAACTGCAGAGCCTATGC 5 1 1 ATGGAATGCA 0.809988 -103 CCCGCAAAAAAAGAGCAAAGCGGCTAACGCGCT 8 9 0 AAGAAAGGCT 0.758828 -152 AAATCGAAATGTGGTATAATGGGCTCGCTATGTAA 8 72 1 GTGGAAGGCT 0.990588 -89 CTCGCCGTTTGGGATCGAATTGGATTACCCATGGT 11 58 0 GGGAAAGGAT 0.750176 -34 CCTTGTTGATGTGGCCGGACCGGATAAAGGGCCGG 12 52 0 GTGGGAGGAT 0.88962 -203 GCAATCCGTCGTGGTGTAATCGGCAGCACCTCTGA 12 174 1 GTGGAAGGCA 0.98843 -81 CGGCGTGTCGGTGAACCAACAGGCATATTCGCTGC 14 54 1 GTGAAAGGCA 0.965516 -71 ATCAGAGTGCATGGGACAACGGGCAGGTCCAATGC 16 27 1 ATGGAAGGCA 0.977519 -111 **** ** **** Masking position 9 Map Score: 2.79447 Number of sites scoring better than the average of aligned sites = 323 Number in coding regions = 287 Number in noncoding regions = 36 Number of orfs with sites within 600 bp upstream = 33 Fraction of orfs with sites within 600 bp upstream = 0.00530035 Motif number 9 ATCTTCTGATTTCAAGGAGACTTCATGAAG 1 124 0 TTCAAGGAGA 0.897464 -69 AAAAGGGATATTGGAGGCCAATAA 1 179 1 TTGGAGGCCA 0.830464 -14 ACCTGCTCATTGTGAGGAGGACATT 5 89 1 TGTGAGGAGG 0.94659 -15 GTGCTTACTGTGGGAGGAGGTAAGGA 6 82 1 TGGGAGGAGG 0.973407 -16 AATGTTATTCTTGGAAGAGAAATTCACTTT 7 83 1 TTGGAAGAGA 0.763338 -84 GACTGAAATCTTGGAGGACGAGGAA 8 146 1 TTGGAGGACG 0.951665 -15 CTAGAGCAATTATAAGGAGGTTCACTGGAA 9 57 0 TATAAGGAGG 0.767829 -70 GCGACGGAGCTTCAAGGAGGGTTG 12 241 1 TTCAAGGAGG 0.945044 -14 GAGAGCCAAGTTTAAGGCGAGGCGGTGCCG 13 111 0 TTTAAGGCGA 0.798519 -21 ********** Masking position 5 Map Score: 2.485 Number of sites scoring better than the average of aligned sites = 581 Number in coding regions = 429 Number in noncoding regions = 152 Number of orfs with sites within 600 bp upstream = 196 Fraction of orfs with sites within 600 bp upstream = 0.0314809 Motif number 10 TTATTGGCCTCCAATATCCCTTTTATCCAT 1 173 0 CCAATATCCC 0.947217 -20 CCCTTAGTCACATAACTCCCGTCTTCATAA 4 77 0 CATAACTCCC 0.833173 -30 AAAAAGCCAAAACTCCCGGTTCGCCGG 7 8 1 CAAAACTCCC 0.96536 -159 CGAAATATAAAAAAACTCCCGGCGAACCGG 7 26 0 AAAAACTCCC 0.756814 -141 TTTCGTGCATCAAATATGCCATGTCTGCGA 7 51 1 CAAATATGCC 0.930093 -116 TCACAAGGATCGAATTTCCCCAATGCAGTA 10 47 1 CGAATTTCCC 0.876571 -170 CTCTTGGCAGCGAATATGCCTGTTGGTTCA 14 65 0 CGAATATGCC 0.916861 -60 CTTTCCGGTCCCATTCTGCCGAACCGGCCG 16 106 0 CCATTCTGCC 0.803249 -32 ********** Masking position 7 Map Score: 1.46237 Number of sites scoring better than the average of aligned sites = 338 Number in coding regions = 290 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 48 Fraction of orfs with sites within 600 bp upstream = 0.0077096 Motif number 11 ACTGCTGAAAGGGCTGACATAAGCCTTTTGC 1 31 1 GGCTGACATA 0.964411 -162 TAAAAAAGGACCGCCGGCAAAAGGCTTATGT 1 47 0 CGCCGGCAAA 0.859571 -146 CGGGCTGAGAGGGCTGGCACATTTCACTTGC 8 40 1 GGCTGGCACA 0.97189 -121 TGGAAAAGACAAGCTGACAAAAAAGCATTTT 9 31 0 AGCTGACAAA 0.881526 -96 GCTATCCGAGCAGCTCACAAGGATCGAATTT 10 33 1 CGCTCACAAG 0.828359 -184 CTCGCCCGCTGCGCTGACACACGTCGACCGT 13 60 1 GGCTGACACA 0.983886 -72 ACACGCCGACGAGCGCACACAAACATGCACG 14 31 0 GGCGCACACA 0.961909 -94 CAGTTGACGGCTGCGCACATATCCACTCTTG 14 89 0 CGCGCACATA 0.895102 -36 * ********* Masking position 9 Map Score: 0.684555 Number of sites scoring better than the average of aligned sites = 385 Number in coding regions = 350 Number in noncoding regions = 35 Number of orfs with sites within 600 bp upstream = 21 Fraction of orfs with sites within 600 bp upstream = 0.00337295 Motif number 12 TAGTTGCACTCAATAGAAAATTCTTGCACT 1 96 1 CAATAGAAAA 0.945991 -97 TCCCTTTTATCCATAGAAAAATATATCCTA 1 157 0 CCATAGAAAA 0.979498 -36 TTCAATAGTACCATAGAAAATCATTCCAAT 6 45 0 CCATAGAAAA 0.979498 -53 TTCATCTCCTCTATATAAAACCGTCATTGT 9 104 0 CTATATAAAA 0.815048 -23 ********** Masking position 5 Map Score: 0.375978 Number of sites scoring better than the average of aligned sites = 17 Number in coding regions = 11 Number in noncoding regions = 6 Number of orfs with sites within 600 bp upstream = 7 Fraction of orfs with sites within 600 bp upstream = 0.00112432 Motif number 13 GGCGGTCCTTTTTTAATTCTGATTTTTCAA 1 63 1 TTTTAATTCT 0.84338 -130 CCTCTTGTCGTTTTAGTTGTCCTATTACAA 3 53 0 TTTTAGTTGT 0.940955 -32 TTTTACTTGTTTTTAATTGTAAAGCAATGT 7 124 0 TTTTAATTGT 0.9499 -43 CTATTTTCTTTTTTACTTGTTTTTAATTGT 7 134 0 TTTTACTTGT 0.967027 -33 GTATTTTGTGTTTTACGTGTTACGCATATG 8 111 0 TTTTACGTGT 0.929636 -50 ********** Masking position 5 Map Score: 0.29974 Number of sites scoring better than the average of aligned sites = 79 Number in coding regions = 67 Number in noncoding regions = 12 Number of orfs with sites within 600 bp upstream = 14 Fraction of orfs with sites within 600 bp upstream = 0.00224863 Motif number 14 ********** No masking Map Score: 1.01851e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 1.01851e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0