AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i250_synecho_ctra_100.orf -o250_synecho_ctra_100.ace -a/home/amcguire/genomes/ORF_synecho.txt -z/home/amcguire/genomes/synecho.fna -g0.46 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.46 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 RCY09804 120 Synechocystis #2 RCY06805 249 Synechocystis #3 RCY33828 162 Synechocystis #4 RCY50530 178 Synechocystis #5 RCY34375 180 Synechocystis #6 RCY29867 300 Synechocystis #7 RCY07516 147 Synechocystis #8 RCY07197 190 Synechocystis #9 RCY14422 284 Synechocystis #10 RCY11010 269 Synechocystis #11 RCY50049 71 Synechocystis #12 RCY41993 184 Synechocystis #13 RCT00257 300 Chlamydia_trachomatis #14 RCT00260 277 Chlamydia_trachomatis #15 RCT00726 208 Chlamydia_trachomatis #16 RCT00795 132 Chlamydia_trachomatis Motif number 1 AATTTAGTTTTGGGTGGGAGGAGTCCATGGCTC 1 18 0 TGGTGGGGAG 0.94408 -103 ACGGGAAATATGCTTGGTAAAGGGAGATGAATT 1 62 0 TGCTGGTAGG 0.902868 -59 ACGGGAGAATGGCTGGAGTGGAGGGTAAAAATA 2 11 0 GGCGGAGGAG 0.952559 -239 CTGGGATTTGTGCTTGGGCGAGGGGATCTCTGT 2 115 1 TGCTGGGAGG 0.982411 -135 TGCAGGGGGGAAGTATTAGGGGA 2 237 0 TGCGGGGAAG 0.991197 -13 TGAATTACTTTGCCGGGGATAAGTTCCGTGGAG 3 101 1 TGCGGGGAAG 0.991197 -62 TCAGGCCAACGGCAGGGGGCAAGGGGGACATGG 4 22 1 GGCGGGGAAG 0.992255 -157 CTTTATCCCTGGGGGGGTTTTGGTTAGTTGGCG 5 59 1 GGGGGGTTGG 0.871094 -122 CCAATGCCAATGGTGGGAATGGGCAACTGCTCA 9 32 0 TGGGGGAGGG 0.890629 -253 AATTCAGATAGGCCGGAGCAAAGGGCGGTTGTT 9 127 0 GGCGGAGAAG 0.951701 -158 CAATTTCCCCGGCGGGGTTAGGGAACAAACTAA 9 216 1 GGCGGGTGGG 0.968928 -69 TTATGGTCATTGCTGGAGCCTGGGCAGCCTGTT 9 258 0 TGCGGAGTGG 0.928014 -27 GTTTTGTCTATGCCTGGGGGTAGAGTTTTTGCT 10 166 1 TGCTGGGTAG 0.952792 -104 TAACATTTATGGCTTGTGAGGAGCGTTGCT 10 250 1 GGCTGTGGAG 0.733082 -20 TAACCATCTTTGGGTGGGTCAGGATTCCTCCGT 12 55 1 TGGTGGGAGG 0.959645 -130 TCCTCCGTTATGCGGGGGATTGGACATTTTGAT 12 80 1 TGCGGGGTGG 0.98821 -105 TCATAATCGGGGGAGGGAAAAAGTCAAGTATGG 14 41 1 GGGGGGAAAG 0.86367 -237 *** **** *** Masking position 6 Map Score: 26.5691 Number of sites scoring better than the average of aligned sites = 1884 Number in coding regions = 1753 Number in noncoding regions = 131 Number of orfs with sites within 600 bp upstream = 146 Fraction of orfs with sites within 600 bp upstream = 0.02345 Motif number 2 CATATTTCCCGTCAGGAAAGGCACAGACAAAAAACCCAAC 1 83 1 GAAGAAGAAA 0.976083 -38 AGGGGGCAAGGGGGACATGGGCATAGATAACAGTGGGACG 4 35 1 GGAGAAGAAA 0.977911 -144 TTACATTGGAGGAGAAATAGATACAGAAAAATCGGAAGCC 6 32 0 GGAGAAGAAA 0.977911 -269 CCCATGGGAGGTGATCTAGATCACAGATAAAAATTGCAAA 6 84 1 GATAAAGAAA 0.898431 -217 GGAGTTCATGGGAAAGAATAGGAGTGAAAAATATGGCGGA 6 163 0 GAAAATGAAA 0.611235 -138 TATATCCTCGGAAAGATTGGTAACAGACAATAGACAACTT 6 238 0 GATGAAGAAA 0.954585 -63 CTGATAAATCCCGGCTTCTATGAAAGATAAACGGATTGGC 7 98 0 CGTAAAGAAA 0.782278 -50 AAATTCAGTGGAGAAGTGCGACAAAGACAATTTCCCCGGC 9 189 1 GATGAAGAAA 0.954585 -96 AGAGGCCACGGTAAACAGCGACGGAGAGAAAGGGAAAAAG 10 124 0 GAAGGAGAAA 0.847032 -146 AGCGGGACAGGAAGAAACGGTCAAAGATAACCCTAGGTTA 11 22 0 GGAGAAGAAA 0.977911 -50 AGCGGGAGAGGAAACTAATAATAAAGAAAAGAGCAATTTC 13 63 1 GAAAAAGAAA 0.944978 -238 CGTCATCTGTCAGAGAAAGAGCAAAGACAAGAGAACTCGT 13 176 0 CAAAAAGAAA 0.865427 -125 CAATCATAATCGGGGGAGGGAAAAAGTCAAGTATGGTAGA 14 38 1 CGAGAAGTAA 0.602791 -240 CTTTTGAAAGCTTAAGTTTAAGATAGAGAATTTCTTATAG 15 87 1 CATAAAGAAA 0.768097 -122 TAATGTGATAGATGGTAATGCTAAAGATAAAAATATAGGT 16 13 0 GGAGAAGAAA 0.977911 -120 * * * * * *** ** Masking position 19 Map Score: 16.1493 Number of sites scoring better than the average of aligned sites = 189 Number in coding regions = 156 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 39 Fraction of orfs with sites within 600 bp upstream = 0.00626405 Motif number 3 GGACGATAGACCGCTGGGATTTGTGCTTGGGCGAGG 2 102 1 CCCTGGGATC 0.987565 -148 GCAAAAGCAACCACAGGGAGAGCAACGCTTCCGAAG 2 177 0 CCCAGGGAGC 0.975022 -73 AAAATGCAAACCATTAGGATTTTGTCATCCTATTCA 3 60 0 CCTTAGGATC 0.679682 -103 ACCAAAACCCCCCCAGGGATAAAGCCGGGATATTTC 5 47 0 CCCAGGGATC 0.955265 -134 AAAGGGAACGCCCCTGGCATCGATGTCGCACCATTT 5 111 0 CCCTGGCATT 0.87066 -70 GATGCAAGCACCCATGGGAGGTGATCTAGATCACAG 6 74 1 CCATGGGAGC 0.934348 -227 ACGGGGCGACCCATTGACAGCGACACCAACATTCCC 7 31 0 CCTTGACAGC 0.815416 -117 AGGTTGCTGGCCTTTGGCTGTCGATTTTGCTGACAG 8 29 0 CCTTGGCTGT 0.728999 -162 TAAGGTTTTGCCACTGGGGTTTTTCCAACTGGGAAG 8 147 0 CCCTGGGGTC 0.968233 -44 CCCATTCCCACCATTGGCATTGGGGCAGGGCCCCAG 9 42 1 CCTTGGCATC 0.950249 -243 TGGGGCAGGGCCCCAGTGTGACGGCCAGGTTTTGGT 9 62 1 CCCAGTGTGC 0.695716 -223 TTTACCGTGGCCTCTGGGTTTTGTCTATGCCTGGGG 10 149 1 CCCTGGGTTT 0.859523 -121 AATACCCCACCCGCTGGCGGAGTAACAAATCAAAAT 12 105 0 CCCTGGCGGC 0.965961 -80 CTTTTTGAAGCCCTTGTGTGCGTGTCTTAGGGATCT 13 272 1 CCTTGTGTGC 0.800611 -29 AAGTTTCCCTTGAGAGGCTCACAATCTCAATC 14 7 1 CCTTGAGAGC 0.896624 -271 ** ******* * Masking position 2 Map Score: 12.5203 Number of sites scoring better than the average of aligned sites = 1320 Number in coding regions = 1219 Number in noncoding regions = 101 Number of orfs with sites within 600 bp upstream = 118 Fraction of orfs with sites within 600 bp upstream = 0.0189528 Motif number 4 AATATGCTTGGTAAAGGGAGATGAATTGGC 1 59 0 GTAAAGGGAG 0.74321 -62 TTTCCCGTCAGGAAAGGCACAGACAAAAAA 1 87 1 GGAAAGGCAC 0.944641 -34 CCTATTCACCCGAAAGCGACTAGGCGCATG 3 38 0 CGAAAGCGAC 0.897471 -125 CTGTTACCCTGGGAAGGCGGGATCGTTTGG 3 135 1 GGGAAGGCGG 0.969091 -28 AACGGCAGGGGGCAAGGGGGACATGGGCAT 4 29 1 GGCAAGGGGG 0.939302 -150 ACAGAAAAATCGGAAGCCAGTAATGACCAG 6 20 0 CGGAAGCCAG 0.870105 -281 TTTTCCAACTGGGAAGGGACGAAGATTTTG 8 133 0 GGGAAGGGAC 0.990353 -58 TGCCAATGGTGGGAATGGGCAACTGCTCAG 9 31 0 GGGAATGGGC 0.883239 -254 CCTGGCATAAGGAAAGCGGGAGAGGAAACT 13 49 1 GGAAAGCGGG 0.966445 -252 GACAGAGTAAGGGAAGCGACTCCGTCCAAG 16 57 1 GGGAAGCGAC 0.988515 -76 GACTGTTCAAGGGAAGCGACACAAGCCCAA 16 92 0 GGGAAGCGAC 0.988515 -41 ********** Masking position 5 Map Score: 11.762 Number of sites scoring better than the average of aligned sites = 814 Number in coding regions = 737 Number in noncoding regions = 77 Number of orfs with sites within 600 bp upstream = 93 Fraction of orfs with sites within 600 bp upstream = 0.0149374 Motif number 5 TTCGGAAGCGTTGCTCTCCCTGTGGTTGCTT 2 178 1 TTCTCTCCCT 0.766437 -72 TTTGCTCATTTTGCTCCCCTAATACTTCCCC 2 223 1 TTCTCCCCTA 0.851545 -27 TCTGTTTGAATTACTTTGCCGGGGATAAGTT 3 95 1 TTCTTTGCCG 0.64142 -68 TCTGTATCTATTTCTCCTCCAATGTAAGTGA 6 45 1 TTCTCCTCCA 0.943464 -256 TAACTCAGTTTTCCTCCGCCATATTTTTCAC 6 149 1 TTCTCCGCCA 0.988338 -152 TCAATGACGTTTTCTCCATCAGACTAGCATC 8 66 0 TTCTCCATCA 0.789946 -125 TTTTTCCCTTTCTCTCCGTCGCTGTTTACCG 10 125 1 TCCTCCGTCG 0.877719 -145 TGGGTCAGGATTCCTCCGTTATGCGGGGGAT 12 69 1 TTCTCCGTTA 0.796392 -116 TTTTGATTTGTTACTCCGCCAGCGGGTGGGG 12 106 1 TTCTCCGCCA 0.988338 -79 TATTATTAGTTTCCTCTCCCGCTTTCCTTAT 13 55 0 TTCTCTCCCG 0.944827 -246 ACTCGTCTTTTTACTCTTTCACAAAAAAAGT 13 151 0 TTCTCTTTCA 0.757953 -150 GTCTTTGCTCTTTCTCTGACAGATGACGTAG 13 188 1 TTCTCTGACA 0.796882 -113 CTTGACTTTTTCCCTCCCCCGATTATGATTG 14 38 0 TCCTCCCCCG 0.913243 -240 GTCGCTTCCCTTACTCTGTCATTCTAATGTG 16 46 0 TTCTCTGTCA 0.940837 -87 ** ******** Masking position 5 Map Score: 12.3953 Number of sites scoring better than the average of aligned sites = 995 Number in coding regions = 902 Number in noncoding regions = 93 Number of orfs with sites within 600 bp upstream = 102 Fraction of orfs with sites within 600 bp upstream = 0.0163829 Motif number 6 CTACGTCCCCAAACGATCCCGCCTTCCCAG 3 143 0 CAAACATCCC 0.940454 -20 TCAGTTACAGAAAAAATTCCCCTTTTTGTGC 4 90 0 AAAAATTCCC 0.960226 -89 TAAATTGAGCCGAAATATCCCGGCTTTATCC 5 36 1 CGAAAATCCC 0.775609 -145 CCATGAACTCCAAACTTTCCCTATTTGACAT 6 192 1 CAAACTTCCC 0.984533 -109 GACAGCGACACCAACATTCCCTTTGGTCAGG 7 21 0 CCAACTTCCC 0.936997 -127 GGAACAAACTAAAACTTTGCCAACAGGCTGC 9 237 1 AAAACTTGCC 0.859983 -48 GAGAAAGGGAAAAAGATTCCCACCCCCCCTT 10 108 0 AAAAGTTCCC 0.952415 -162 CATTAGTCTTCAAACCTTTCCAGC 12 4 0 CAAACTTTCC 0.847589 -181 AAGCCCACAAAAAAAATACCCCACCCGCTGG 12 124 0 AAAAATACCC 0.754152 -61 TACAGCTTTCAAAAAATTCCCTTGTAGCTAA 14 192 0 AAAAATTCCC 0.960226 -86 ACTTTTATGCAGAAGGTTCCCC 14 266 1 AGAAGTTCCC 0.895899 -12 ***** ***** Masking position 4 Map Score: 7.72106 Number of sites scoring better than the average of aligned sites = 545 Number in coding regions = 464 Number in noncoding regions = 81 Number of orfs with sites within 600 bp upstream = 89 Fraction of orfs with sites within 600 bp upstream = 0.0142949 Motif number 7 AAGGCACAGACAAAAAACCCAACAACAGGGG 1 100 1 CAAAACCCAA 0.844496 -21 GTGATAGAGGGAAAAAGCTCAGATTCACATTG 2 42 1 GAAAACTCAG 0.938837 -208 CTCGCCCAAGCACAAATCCCAGCGGTCTATCG 2 105 0 CAAAACCCAG 0.979851 -145 CCCCCCCAGGGATAAAGCCGGGATATTTCGGC 5 44 0 GAAAACCGGG 0.938684 -137 CGACATAGCTGATAAATCCCGGCTTCTATGAA 7 114 0 GAAAACCCGG 0.989304 -34 AAACGTCATTGATCAACCCCTGAACTAATTTT 8 85 1 GACAACCCTG 0.90007 -106 TTCCCAGTTGGAAAAACCCCAGTGGCAAAACC 8 148 1 GAAAACCCAG 0.992778 -43 CCCAGGCATAGACAAAACCCAGAGGCCACGGT 10 152 0 GAAAACCCAG 0.992778 -118 ** *** ***** Masking position 6 Map Score: 7.10688 Number of sites scoring better than the average of aligned sites = 204 Number in coding regions = 181 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 31 Fraction of orfs with sites within 600 bp upstream = 0.00497912 Motif number 8 GGAGCAAAATGAGCAAATTCTTAGGGCGCA 2 210 0 GAGCAAATTC 0.809116 -40 TAGTTTTTAACAGTAAAGTCAAACCAT 5 164 1 CAGTAAAGTC 0.810807 -17 CAGTAATGACCAGTAAAAACAT 6 3 0 CAGTAAAAAC 0.711325 -298 AATCGGAAGCCAGTAATGACCAGTAAAAAC 6 13 0 CAGTAATGAC 0.810807 -288 CGGGATTTATCAGCTATGTCGAAGAATTTT 7 125 1 CAGCTATGTC 0.73749 -23 TTAAATCTGTCAGCAAAATCGACAGCCAAA 8 23 1 CAGCAAAATC 0.887751 -168 TTCAGGGGTTGATCAATGACGTTTTCTCCA 8 79 0 GATCAATGAC 0.586407 -112 GCCCAGGCTCCAGCAATGACCATAACCGA 9 266 1 CAGCAATGAC 0.955607 -19 TAAATGTACTGAGCTAAAACAGAGAGGGCA 10 19 0 GAGCTAAAAC 0.716546 -251 AGCGACATCATAGCAAAAACTCTACCCCCA 10 180 0 TAGCAAAAAC 0.616183 -90 ATAAAGAAAAGAGCAATTTCATAATTACAT 13 83 1 GAGCAATTTC 0.730352 -218 CTCTTATATGGAGCAAAGAAATGTTTTGTT 13 119 0 GAGCAAAGAA 0.689332 -182 GTCAGAGAAAGAGCAAAGACAAGAGAACTC 13 178 0 GAGCAAAGAC 0.971171 -123 ********** Masking position 6 Map Score: 5.184 Number of sites scoring better than the average of aligned sites = 909 Number in coding regions = 797 Number in noncoding regions = 112 Number of orfs with sites within 600 bp upstream = 123 Fraction of orfs with sites within 600 bp upstream = 0.0197559 Motif number 9 AACTAAATTCTTCAACTGCCAATTCATCTC 1 42 1 TTCAACTGCC 0.756096 -79 CAACTGCCAATTCATCTCCCTTTACCAAGC 1 54 1 TTCATCTCCC 0.85812 -67 TGGTTATTAGCTCACGTCCCTTAAGCGGC 3 10 0 CTCACGTCCC 0.74973 -153 TGAGCTAATAACCATGCGCCTAGTCGCTTT 3 26 1 ACCATGCGCC 0.765654 -137 GTTATCTATGCCCATGTCCCCCTTGCCCCC 4 36 0 CCCATGTCCC 0.765179 -143 TGTGATCTAGATCACCTCCCATGGGTGCTT 6 79 0 ATCACCTCCC 0.892769 -222 TAACTCAGTTTTCCTCCGCCATATTTTTCA 6 149 1 TTCCTCCGCC 0.79147 -152 AACGTCATTGATCAACCCCTGAACTAATTT 8 86 1 ATCAACCCCT 0.525335 -105 TTGACAGTCAAACAACCGCCCTTTGCTCCG 9 117 1 AACAACCGCC 0.541054 -168 GAAAAAGATTCCCACCCCCCCTTTGAAATT 10 101 0 CCCACCCCCC 0.974483 -169 ATAGCAAAAACTCTACCCCCAGGCATAGAC 10 171 0 CTCTACCCCC 0.651632 -99 AACGTCTACAATCACCTGCCGGTTCACCGC 10 221 0 ATCACCTGCC 0.854535 -49 AATTTTCCGGACCAACCGCC 11 62 1 ACCAACCGCC 0.913473 -10 ATCAAAATGTCCAATCCCCCGCATAACGGA 12 83 0 CCAATCCCCC 0.620483 -102 AAAAAAATACCCCACCCGCTGGCGGAGTAA 12 116 0 CCCACCCGCT 0.715225 -69 TATTATTAGTTTCCTCTCCCGCTTTCCTTA 13 56 0 TTCCTCTCCC 0.70283 -245 CTTGACTTTTTCCCTCCCCCGATTATGATT 14 39 0 TCCCTCCCCC 0.871431 -239 ********** Masking position 9 Map Score: 8.36135 Number of sites scoring better than the average of aligned sites = 3620 Number in coding regions = 3293 Number in noncoding regions = 327 Number of orfs with sites within 600 bp upstream = 315 Fraction of orfs with sites within 600 bp upstream = 0.0505943 Motif number 10 ATTCTCCCGTGATAGAGGGAAAAAGCTCAGAT 2 34 1 GAAGAGGGAA 0.982247 -216 CAATTAAGCACAAAAAGGGGAATTTTTTCTGT 4 83 1 CAAAAGGGAA 0.977379 -96 AAGTTGGGGGCAAAAAGGGAACGCCCCTGGCA 5 128 0 CAAAAGGGAC 0.909868 -53 GTACGGATGTCAAATAGGGAAAGTTTGGAGTT 6 197 0 CAATAGGGAA 0.92924 -104 TGAGCTAAAACAGAGAGGGCAAGACGAAC 10 8 0 CAAGAGGGAA 0.985618 -262 CAGCGACGGAGAGAAAGGGAAAAAGATTCCCA 10 117 0 GAAAAGGGAA 0.97213 -153 CTGACCCACCCAAAGATGGTTAGACATTTTCA 12 45 0 CAAGATGGTA 0.68024 -140 TCATCTGTCAGAGAAAGAGCAAAGACAAGAGA 13 182 0 GAAAAGAGAA 0.773734 -119 ATTCTAATGTGATAGATGGTAATGCTAAAGAT 16 25 0 GAAGATGGAA 0.915929 -108 ** ****** ** Masking position 6 Map Score: 6.30412 Number of sites scoring better than the average of aligned sites = 175 Number in coding regions = 152 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 11 ATATTGAGCAAATTTGTCAATGTGAATCTG 2 61 0 AATTTGTCAA 0.592509 -189 ACAAAAGTTTAAGCTGTCAGTTACAGAAAA 4 107 0 AAGCTGTCAG 0.942053 -72 ATCTAAGCTTAATTTTTCAGGGGATTGCC 4 160 1 AATTTTTCAG 0.758739 -19 TTTTTGCCCCCAACTTTCAATAGTTTTTAA 5 144 1 CAACTTTCAA 0.635863 -37 GTCTGTTACCAATCTTTCCGAGGATATACG 6 250 1 AATCTTTCCG 0.791404 -51 TTGATATTTAAATCTGTCAGCAAAATCGAC 8 16 1 AATCTGTCAG 0.951713 -175 CTAACTACGTCATCTGTCAGAGAAAGAGCA 13 193 0 CATCTGTCAG 0.955265 -108 TGCGAAAGTACAGCTTTCAAAAAATTCCCT 14 201 0 CAGCTTTCAA 0.874022 -77 TTAAAAAGAGCATCTTACAGCGACTTGAAA 15 52 0 CATCTTACAG 0.734982 -157 TCTTAAACTTAAGCTTTCAAAAGGCAAGTT 15 80 0 AAGCTTTCAA 0.864933 -129 ********** Masking position 5 Map Score: 2.21745 Number of sites scoring better than the average of aligned sites = 158 Number in coding regions = 126 Number in noncoding regions = 32 Number of orfs with sites within 600 bp upstream = 37 Fraction of orfs with sites within 600 bp upstream = 0.00594282 Motif number 12 CTCGCATAGCCTATCACAAAAGTTTAAGCTG 4 121 0 CTATCACAAA 0.949315 -58 CACTCCTATTCTTTCCCATGAACTCCAAACT 6 177 1 CTTTCCCATA 0.926499 -124 CAAACTAAAACTTTGCCAACAGGCTGCCCAG 9 241 1 CTTTGCCAAA 0.847785 -44 TCTTTTTACTCTTTCACAAAAAAAGTAACTC 13 146 0 CTTTCACAAA 0.977288 -155 GAAAGTACAGCTTTCAAAAAATTCCCTTGTA 14 197 0 CTTTCAAAAA 0.848146 -81 ATAGAAAAGGCTTTCACAACATACGTTAGGG 15 163 0 CTTTCACAAA 0.977303 -46 GCATTACCATCTATCACATTAGAATGACAGA 16 32 1 CTATCACATA 0.8907 -101 ********* * Masking position 8 Map Score: 2.64141 Number of sites scoring better than the average of aligned sites = 34 Number in coding regions = 23 Number in noncoding regions = 11 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 13 ********** No masking Map Score: 7.71893e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 7.71893e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 15 ********** No masking Map Score: 7.71893e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0