AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i099_ecoli_mtub_300.orf -o099_ecoli_mtub_300.ace -a/home/amcguire/genomes/ORF_ecoli.txt -z/home/amcguire/genomes/ecoli.fna -g0.58 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.58 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: Rv0823c 87 hypothetical protein Rv0823c Input sequences: #1 BIME185 97 BIME #2 pstC 86 high-affinity phosphate-specific transport system, cytoplasmic membrane component #3 pstS 300 high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein #4 phoY2 57 phoY2 #5 Rv0822c 165 hypothetical protein Rv0822c #6 desA1 161 desA1 #7 Rv0825c 80 hypothetical protein Rv0825c #8 phoS2 271 phoS2 #9 pstB 215 pstB #10 pstC 59 pstC #11 phoY1 107 phoY1 #12 lpdA 202 lpdA Motif number 1 CCTCACCCTAACCCTCTCCCCAGAGGGGCGA 1 31 1 ACCTCTCCCC 0.6241 -67 CTCGGTCGGTCCCCTCGCCCCTCTGGGGAGA 1 45 0 CCCTCGCCCC 0.970289 -53 CGAGGGGACCGACCGAGCGCCTTTTTGACTC 1 59 1 GCCGAGCGCC 0.978393 -39 TGCGTAAGCGGGGCATTTTTCTTC 3 4 1 GAAGCGGGGC 0.709002 -297 ACCGCCACGAGTCGGCGCCGCACAATGCAGC 5 67 0 GCGGCGCCGC 0.974031 -99 CGCACCTTCGCGCAGCACCGCCACGAGTCGG 5 83 0 CCAGCACCGC 0.970637 -83 GCTGCGTGTCCTACGCGCACCTTCGCGCAGC 5 98 0 CACGCGCACC 0.897521 -68 AGGACACGCAGCCAACACCGCGGGCGTCCGC 5 117 1 GCAACACCGC 0.782241 -49 CTGGGGTTCACCCCACGCGGCCACCGGGGCC 6 17 1 CCCACGCGGC 0.993202 -145 GGATGCTGGCATCGGCGGGCCCCGGTGGCCG 6 34 0 ACGGCGGGCC 0.791812 -128 GCCCGCTGCTGGCAGCTCAACATGCCGCGCG 6 66 1 GCAGCTCAAC 0.531255 -96 CAAGTTTGGGCTTCGCGCGGCATGTTGAGCT 6 79 0 CTCGCGCGGC 0.974856 -83 TGCCTGCTGTGTATGCACGGCATACGGACAT 8 93 1 GATGCACGGC 0.554241 -179 TGGCTGGTTCGACCGCGGGTCTCAGGGGAAG 8 125 0 GCCGCGGGTC 0.818371 -147 GGCCAAGGGCGACGGCACGCCAAGTTCGCCG 8 182 1 GCGGCACGCC 0.950118 -90 GTGGATCCGCCACCACGACCCCCTCGAGAGG 9 17 0 CCCACGACCC 0.793793 -199 GTGGTGGCGGATCCACTCGCCACCGGTGGTC 9 32 1 ACCACTCGCC 0.859784 -184 CACCGGTGGTCGCCGAGCCACCGACCCGGGG 9 52 1 CCCGAGCCAC 0.882461 -164 GACCCTCAGTATCAGCGGCCCCTCCTGAACG 9 141 0 ACAGCGGCCC 0.775772 -75 GCTCCTTGGACAAAGCGCGCCGTCGACCCTC 9 165 0 CAAGCGCGCC 0.94683 -51 CCTCGTTGACCACCACGCGACAGCAACCTCC 10 11 1 CCCACGCGAC 0.965112 -49 CCGCAAAGCAGCCCGATGGCCCGACGGAGGT 10 36 0 GCCGATGGCC 0.669464 -24 GCTCCGCAAAGCAGCCCGATGG 10 48 0 CCCGCAAAGC 0.711033 -12 ACCATGGCGGCACCGCGCGACATACCCGCTT 11 21 0 CCCGCGCGAC 0.993854 -87 GCTGCCGCGGATCCACACCGCCATCATCGAC 11 50 0 ACCACACCGC 0.792607 -58 TCCGCGGCAGCACCACACGACGACTCAGGGT 11 70 1 CCCACACGAC 0.886599 -38 ACGACTCAGGGTCAGAGAGGCGTGACACC 11 89 1 GCAGAGAGGC 0.532032 -19 GATGGGTACCACCCGAGCCCCCGCCGTCTAA 12 21 0 ACCGAGCCCC 0.868372 -182 TGACCCGCACCGCAGCGCGGCGCGATGGGTA 12 44 0 CCAGCGCGGC 0.996089 -159 AGCTGTGCTTGACTGCTCGGCTCCTCCTCAC 12 81 1 GCTGCTCGGC 0.929095 -122 TGCTCGGCTCCTCCTCACGCCGCTGCGCGGC 12 94 1 CCCTCACGCC 0.952601 -109 CGACGATGCACGCCGCGCAGCGGCGTGAGGA 12 105 0 CCCGCGCAGC 0.992081 -98 AGCAGTCCAACACAGCTCGGCGACGATGCAC 12 125 0 CCAGCTCGGC 0.984675 -78 AGCTGTGTTGGACTGCTCGGCTCCTCCTCAC 12 139 1 GCTGCTCGGC 0.929095 -64 TGCTCGGCTCCTCCTCACGCCGCTGCGCGGC 12 152 1 CCCTCACGCC 0.952601 -51 CGACGATGCACGCCGCGCAGCGGCGTGAGGA 12 163 0 CCCGCGCAGC 0.992081 -40 AGCCCATAACCTAGCTCGGCGACGATGCAC 12 183 0 CTAGCTCGGC 0.74468 -20 * ********* Masking position 11 Map Score: 57.6656 Number of sites scoring better than the average of aligned sites = 9710 Number in coding regions = 9342 Number in noncoding regions = 368 Number of orfs with sites within 600 bp upstream = 305 Fraction of orfs with sites within 600 bp upstream = 0.0489881 Motif number 2 AAAGGCGCTCGGTCGGTCCCCTCGCCCCTCTGGGG 1 48 0 GGCGCCCCGC 0.948258 -50 AGGCCGGGTACGGTGTTTTACGCCGCATCCGGCAT 2 20 1 CGTGTACCCG 0.767847 -67 ATCGAGACCCTGTCGAAATCGCGTCTGGACCG 5 8 1 CCTGGAACGC 0.88464 -158 TAAATCAGTACGATGTGGGCCTTGCTGCATTGTGC 5 44 1 CGTGGCCTGC 0.93869 -122 GGTGTTGGCTGCGTGTCCTACGCGCACCTTCGCGC 5 101 0 GCTGCACCGC 0.580413 -65 GAGTCTAGGTGGCGGACGCCCGCGGTGTTGGCTGC 5 124 0 GGGGGCCCGG 0.972666 -42 TGGCCGCGTGGGGTGAACCCCAGTCGTCC 6 5 0 GGTGCCCGTC 0.852172 -157 GCAGCGGGCAGGATGCTGGCATCGGCGGGCCCCGG 6 40 0 GGTGGCACGG 0.946346 -122 GCATCCTGCCCGCTGCTGGCAGCTCAACATGCCGC 6 59 1 CGTGGCACTC 0.933659 -103 CCCTGAGACCCGCGGTCGAACCAGCCACGTGTCCA 8 129 1 CGGGGACAGC 0.711726 -143 CGCCCTTGGCCGGGGTTGACCCCTGATGATGGACA 8 158 0 CGGGGCCCTG 0.830614 -114 GGGTCGTGGTGGCGGATCCACTCGCCACCGGTGGT 9 27 1 GGGGCACCGC 0.979808 -189 CACTCGCCACCGGTGGTCGCCGAGCCACCGACCCG 9 45 1 CGTGCCCAGC 0.674809 -171 AGACCTCTTTCGATGCACAACGGTGACGGCTCGAA 9 89 0 CGTGCACGTG 0.780233 -127 TTGGGATGCTCCTTGGACAAAGCGCGCCGTCGACC 9 168 0 CCTGCAACGC 0.915306 -48 ATCCCAAGGAGCATGTAGTACCCTGCGCCG 9 196 1 GCTGGACCTG 0.692898 -20 CCTCGTTGACCACCACGCGACAGCAACC 10 4 1 CGTGCCCCGC 0.990102 -56 CCATCATCGACCATGGCGGCACCGCGCGACATACC 11 26 0 CCTGGCACGC 0.940975 -82 GTGGTGCTGCCGCGGATCCACACCGCCATCATCGA 11 51 0 CGGGCACCCG 0.866112 -57 CAGCGCGGCGCGATGGGTACCACCCGAGCCCCCGC 12 28 0 CGTGTCCCCC 0.920458 -175 CACAGCTTGACGATGACCCGCACCGCAGCGCGGCG 12 53 0 CGTGCGCCCG 0.905181 -150 AGCTCGGCGACGATGCACGCCGCGCAGCGGCGTGA 12 108 0 CGTGCCCCGC 0.99256 -95 CGCCGAGCTGTGTTGGACTGCTCGGCTCCTCCTCA 12 134 1 TGTGCGCCGG 0.734387 -69 AGCTCGGCGACGATGCACGCCGCGCAGCGGCGTGA 12 166 0 CGTGCCCCGC 0.99256 -37 ** ** * ** *** Masking position 5 Map Score: 38.9183 Number of sites scoring better than the average of aligned sites = 4069 Number in coding regions = 3946 Number in noncoding regions = 123 Number of orfs with sites within 600 bp upstream = 117 Fraction of orfs with sites within 600 bp upstream = 0.0187922 Motif number 3 GAGAGGGTTAGGGTGAGGGGAAAACCGTGT 1 19 0 GGGTGAGGGG 0.673639 -79 CTCCCCAGAGGGGCGAGGGGACCGACCGAG 1 46 1 GGGCGAGGGG 0.872962 -52 AGTCAAAAAGGCGCTCGGTCGGTCCCCTCG 1 59 0 GCGCTCGGTC 0.881858 -39 CTGCATTGTGCGGCGCCGACTCGTGGCGGT 5 68 1 CGGCGCCGAC 0.781236 -98 CGACTCGTGGCGGTGCTGCGCGAAGGTGCG 5 84 1 CGGTGCTGCG 0.73723 -82 GGTGGCGGACGCCCGCGGTGTTGGCTGCGT 5 122 0 GCCCGCGGTG 0.860071 -44 GCCCCGGTGGCCGCGTGGGGTGAACCCCAG 6 17 0 CCGCGTGGGG 0.950054 -145 TCAACATGCCGCGCGAAGCCCAAACTTGAT 6 82 1 GCGCGAAGCC 0.877172 -80 TAGTCAGAATTCGTGTGGCCAATGAAGATT 7 29 0 TCGTGTGGCC 0.711885 -52 CCCAGGTTTCGGGAGCAGTCACAGGAAGCT 8 59 0 GGGAGCAGTC 0.716604 -213 GGCGAACTTGGCGTGCCGTCGCCCTTGGCC 8 182 0 GCGTGCCGTC 0.889796 -90 CACGACCCCCTCGAGAGGAGTTGC 9 5 0 TCGAGAGGAG 0.593375 -211 CCCGGGTCGGTGGCTCGGCGACCACCGGTG 9 52 0 TGGCTCGGCG 0.683352 -164 GGGTCGGTATTCGAGCCGTCACCGTTGTGC 9 80 1 TCGAGCCGTC 0.753961 -136 CTTGGACAAAGCGCGCCGTCGACCCTCAGT 9 162 0 GCGCGCCGTC 0.964755 -54 CGGCGCAGGGTACTACATGC 9 206 0 CGGCGCAGGG 0.900176 -10 GAGGTTGCTGTCGCGTGGTGGTCAACGAGG 10 11 0 TCGCGTGGTG 0.932322 -49 CGCGACATACCCGCTTGGCGTAGCCT 11 7 0 CCGCTTGGCG 0.75048 -101 AGCGGGTATGTCGCGCGGTGCCGCCATGGT 11 22 1 TCGCGCGGTG 0.98644 -86 CCCTGAGTCGTCGTGTGGTGCTGCCGCGGA 11 70 0 TCGTGTGGTG 0.802497 -38 ACCCATCGCGCCGCGCTGCGGTGCGGGTCA 12 45 1 CCGCGCTGCG 0.963286 -158 TGAGGAGGAGCCGAGCAGTCAAGCACAGCT 12 81 0 CCGAGCAGTC 0.891105 -122 CCGCGCAGCGGCGTGAGGAGGAGCCGAGCA 12 94 0 GCGTGAGGAG 0.793596 -109 ACGATGCACGCCGCGCAGCGGCGTGAGGAG 12 104 0 CCGCGCAGCG 0.981284 -99 TGCATCGTCGCCGAGCTGTGTTGGACTGCT 12 126 1 CCGAGCTGTG 0.868672 -77 TGAGGAGGAGCCGAGCAGTCCAACACAGCT 12 139 0 CCGAGCAGTC 0.891105 -64 CCGCGCAGCGGCGTGAGGAGGAGCCGAGCA 12 152 0 GCGTGAGGAG 0.793596 -51 ACGATGCACGCCGCGCAGCGGCGTGAGGAG 12 162 0 CCGCGCAGCG 0.981284 -41 ********** Masking position 8 Map Score: 38.4401 Number of sites scoring better than the average of aligned sites = 9103 Number in coding regions = 8725 Number in noncoding regions = 378 Number of orfs with sites within 600 bp upstream = 321 Fraction of orfs with sites within 600 bp upstream = 0.051558 Motif number 4 GGCGAGGGGACCGACCGAGCGCCTTTTTGAC 1 57 1 CCGACCGGCG 0.95987 -41 AACACCGTACCCGGCCTGGAGTTTTA 2 6 0 CCGGCCTGAG 0.974587 -81 GCCTACGTTCCCGACCTTGGAAAATGCCGTA 4 29 0 CCGACCTGGA 0.917452 -29 TTGTGCGGCGCCGACTCGTGGCGGTGCTGCG 5 73 1 CCGACTCTGG 0.69018 -93 GTCCTACCGGCCTCCGAGAGTCTAGGT 5 149 0 CCGGCCTCGA 0.916528 -17 TTCACCCCACGCGGCCACCGGGGCCCGCCGA 6 23 1 GCGGCCACGG 0.956032 -139 TGTTACCGTTTCGGCCGACAGCCGGAAAAGA 8 18 0 TCGGCCGCAG 0.955773 -254 CGTGGCTGGTTCGACCGCGGGTCTCAGGGGA 8 127 0 TCGACCGGGG 0.975178 -145 GGGGTCAACCCCGGCCAAGGGCGACGGCACG 8 170 1 CCGGCCAGGG 0.991634 -102 GCCAAGTTCGCCGACCGTTAACCTAGTGCTG 8 200 1 CCGACCGTAA 0.771375 -72 AAACAGCTGGTCGGCCGTTAGGAACTGAA 8 253 1 TCGGCCGTAG 0.877517 -19 CGGTGGCTCGGCGACCACCGGTGGCGAGTGG 9 44 0 GCGACCACGG 0.945323 -172 GGCTCGAATACCGACCCCGGGTCGGTGGCTC 9 66 0 CCGACCCGGG 0.993007 -150 AAGCGCGCCGTCGACCCTCAGTATCAGCGGC 9 153 0 TCGACCCCAG 0.933273 -63 CAACCTCCGTCGGGCCATCGGGCTGCTTTGC 10 34 1 CGGGCCACGG 0.892782 -26 TCACGCCTCTCTGACCCTGAGTCGTCGTGTG 11 83 0 CTGACCCGAG 0.780541 -25 ******* *** Masking position 5 Map Score: 22.6279 Number of sites scoring better than the average of aligned sites = 1172 Number in coding regions = 1039 Number in noncoding regions = 133 Number of orfs with sites within 600 bp upstream = 78 Fraction of orfs with sites within 600 bp upstream = 0.0125281 Motif number 5 TTCATTCTGTGACAGAGAAAAAGTAGCCGAA 3 88 0 GACAGAGAAA 0.970552 -213 ACGAAGAGATGACAGAAAAATTTTCATTCTG 3 110 0 GACAGAAAAT 0.945211 -191 ACAGTTTTATGACAGAGAGATAAAGTCTTCA 3 189 0 GACAGAGAAT 0.989015 -112 TAAGGAATATGACAGTTTTATGACAGAGAGA 3 200 0 GACAGTTTAT 0.740916 -101 ACAAACAGGTGACAGTTATATGTAAGGAATA 3 222 0 GACAGTTAAT 0.94103 -79 ATCGCGTCTGGACCGATAAATCAGTACGATG 5 28 1 GACCGATAAT 0.920495 -138 GCTACCGAGAGACACAGATATATTGACTGCA 6 112 1 GACACAGAAT 0.969561 -50 GCAACCATTAGACACAGATAACTGGAGGCGC 6 140 1 GACACAGAAA 0.921015 -22 ******** ** Masking position 2 Map Score: 5.80433 Number of sites scoring better than the average of aligned sites = 139 Number in coding regions = 116 Number in noncoding regions = 23 Number of orfs with sites within 600 bp upstream = 23 Fraction of orfs with sites within 600 bp upstream = 0.00369419 Motif number 6 CGTAAAACACCGTACCCGGCCTGGAGTTTT 2 12 0 CGTACCCGGC 0.816735 -75 TGTTTTACGCCGCATCCGGCATTACAAAAT 2 33 1 CGCATCCGGC 0.951262 -54 TTTTGCTTCTCGTAGCCAACAAACAATGCT 3 257 1 CGTAGCCAAC 0.863996 -44 CGCCGCACAATGCAGCAAGGCCCACATCGT 5 53 0 TGCAGCAAGG 0.831315 -113 GCGTAGGACACGCAGCCAACACCGCGGGCG 5 113 1 CGCAGCCAAC 0.976322 -53 GCATCCTGCCCGCTGCTGGCAGCTCAACAT 6 59 1 CGCTGCTGGC 0.844423 -103 CCAATGAAGATTCAGCAGGCAAAACCACCA 7 11 0 TTCAGCAGGC 0.833524 -70 CACAGGAAGCTGCAGCAAGCTTGTTACCGT 8 40 0 TGCAGCAAGC 0.974399 -232 CGGGAGCAGTCACAGGAAGCTGCAGCAAGC 8 50 0 CACAGGAAGC 0.756214 -222 GCCGTGCATACACAGCAGGCACACCCCCAG 8 84 0 CACAGCAGGC 0.972703 -188 CTGTTTTGCTCGCAGCAAATGAAGCTAACA 8 229 0 CGCAGCAAAT 0.768797 -43 ********** Masking position 4 Map Score: 4.4805 Number of sites scoring better than the average of aligned sites = 4652 Number in coding regions = 4072 Number in noncoding regions = 580 Number of orfs with sites within 600 bp upstream = 242 Fraction of orfs with sites within 600 bp upstream = 0.0388693 Motif number 7 GTTTTCCCCTCACCCTAACCCTCTCCCCAGA 1 24 1 CACCCTAACC 0.963684 -74 GTCCTACGCGCACCTTCGCGCAGCACCGCCA 5 91 0 CACCTTCGCC 0.863791 -75 GGGCGTCCGCCACCTAGACTCTCGGAGGCCG 5 138 1 CACCTAGACC 0.930807 -28 CCCACGCGGCCACCGGGGCCCGCCGATGCCA 6 28 1 CACCGGGGCC 0.974645 -134 AGCTCTCCTAAACTCCATAGTGACA 7 66 0 CTCCTAAACC 0.894527 -15 CCTGTGACTGCTCCCGAAACCTGGGGGTGTG 8 64 1 CTCCCGAAAC 0.84759 -208 GGACATCCTTCCCCTGAGACCCGCGGTCGAA 8 118 1 CCCCTGAGAC 0.692699 -154 GTGGATCCGCCACCACGACCCCCTCGAGAGG 9 17 0 CACCACGACC 0.836961 -199 TCAGCGGCCCCTCCTGAACGCTAGGATTTCA 9 130 0 CTCCTGAACC 0.968837 -86 GGTGTCACGCCTCTCTGACCCTGAGTCGTCG 11 87 0 CTCTCTGACC 0.512163 -21 CGATGGGTACCACCCGAGCCCCCGCCGTCTA 12 22 0 CACCCGAGCC 0.987443 -181 CGATGACCCGCACCGCAGCGCGGCGCGATGG 12 47 0 CACCGCAGCC 0.945486 -156 ********* * Masking position 3 Map Score: 6.56997 Number of sites scoring better than the average of aligned sites = 1039 Number in coding regions = 965 Number in noncoding regions = 74 Number of orfs with sites within 600 bp upstream = 72 Fraction of orfs with sites within 600 bp upstream = 0.0115644 Motif number 8 GGTGCTGCGCGAAGGTGCGCGTAGGACACG 5 95 1 GAAGGTGCGC 0.686874 -71 ACGCAGCCAACACCGCGGGCGTCCGCCACC 5 122 1 CACCGCGGGC 0.894597 -44 GACTGGGGTTCACCCCACGCGGCCACCGGG 6 15 1 CACCCCACGC 0.957212 -147 GGCAGCTCAACATGCCGCGCGAAGCCCAAA 6 76 1 CATGCCGCGC 0.988638 -86 AGGATGTCCGTATGCCGTGCATACACAGCA 8 97 0 TATGCCGTGC 0.70648 -175 GGCCAAGGGCGACGGCACGCCAAGTTCGCC 8 182 1 GACGGCACGC 0.863297 -90 GCTCCTTGGACAAAGCGCGCCGTCGACCCT 9 166 0 CAAAGCGCGC 0.801569 -50 GAGCATGTAGTACCCTGCGCCG 9 204 1 TACCCTGCGC 0.830247 -12 GCGGGTATGTCGCGCGGTGCCGCCATGGTC 11 23 1 CGCGCGGTGC 0.79217 -85 GGTGTCACGCCTCTCTGACCCTGAG 11 93 0 CACGCCTCTC 0.711557 -15 TGGTACCCATCGCGCCGCGCTGCGGTGCGG 12 41 1 CGCGCCGCGC 0.993937 -162 GGGTCATCGTCAAGCTGTGCTTGACTGCTC 12 69 1 CAAGCTGTGC 0.831704 -134 GGCGACGATGCACGCCGCGCAGCGGCGTGA 12 108 0 CACGCCGCGC 0.998233 -95 GGCGACGATGCACGCCGCGCAGCGGCGTGA 12 166 0 CACGCCGCGC 0.998233 -37 ********** Masking position 10 Map Score: 19.3672 Number of sites scoring better than the average of aligned sites = 3335 Number in coding regions = 3208 Number in noncoding regions = 127 Number of orfs with sites within 600 bp upstream = 133 Fraction of orfs with sites within 600 bp upstream = 0.021362 Motif number 9 CCGAGCGCCTTTTTGACTCTGTACACGGTTAA 1 71 1 TTTTGACTGT 0.887685 -27 AGCGGGGCATTTTTCTTCCTGTTATGTTTTTA 3 17 1 TTTTCTCTGT 0.962397 -284 GACAGAAAAATTTTCATTCTGTGACAGAGAAA 3 99 0 TTTTCACTGT 0.979488 -202 AGAGATAAAGTCTTCAGTCTGATTTAAATAAG 3 173 0 TCTTCACTGA 0.908242 -128 ACTGAAGACTTTATCTCTCTGTCATAAAACTG 3 187 1 TTATCTCTGT 0.841609 -114 TGGTGGTTTTGCCTGCTGAATCTTCATTG 7 8 1 TTTGCCCTGA 0.793416 -73 GGCGCCCTCTTTTCCGGCTGTCGGCCGAAAC 8 10 1 TTTTCCCTGT 0.975363 -262 GTGCGGGTCATCGTCAAGCTGTGCTTGACTGC 12 65 1 TCGTCACTGT 0.892701 -138 ****** **** Masking position 10 Map Score: 1.82564 Number of sites scoring better than the average of aligned sites = 232 Number in coding regions = 189 Number in noncoding regions = 43 Number of orfs with sites within 600 bp upstream = 53 Fraction of orfs with sites within 600 bp upstream = 0.00851269 Motif number 10 ********** No masking Map Score: 2.07011e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 11 ********** No masking Map Score: 2.07011e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 12 ********** No masking Map Score: 2.07011e-12 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0