AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i294_ecoli_mtub_100.orf -o294_ecoli_mtub_100.ace -a/home/amcguire/genomes/ORF_ecoli.txt -z/home/amcguire/genomes/ecoli.fna -g0.58 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.58 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: kasB 30 kasB Input sequences: #1 lpxC 100 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis #2 rpsB 300 30S ribosomal subunit protein S2 #3 tsf 257 protein chain elongation factor EF-Ts #4 pyrH 146 uridylate kinase #5 frr 291 ribosome releasing factor #6 yaeM 91 putative ATP-binding component of a transport system #7 yaeS 185 orf, hypothetical protein #8 cdsA 120 CDP-diglyceride synthetase #9 yaeT 29 orf, hypothetical protein #10 hlpA 121 histone-like protein, located in outer membrane or nucleoid #11 fabZ 104 (3R)-hydroxymyristol acyl carrier protein dehydratase #12 dnaE 36 DNA polymerase III, alpha subunit #13 lnt 24 apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane #14 ybeX 89 putative transport protein #15 ybeZ 113 putative ATP-binding protein in pho regulon #16 plsX 110 glycerolphosphate auxotrophy in plsB background #17 fabH 67 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase #18 acpP 210 acyl carrier protein #19 fabF 87 3-oxoacyl-[acyl-carrier-protein] synthase II #20 accD 155 acetylCoA carboxylase, carboxytransferase component, beta subunit #21 ucpA 62 putative oxidoreductase #22 yfeT 163 orf, hypothetical protein #23 rnc 271 RNase III, ds RNA #24 fadD30 300 fadD30 #25 fabH 81 fabH #26 accD3 26 accD3 #27 fabG2 128 fabG2 #28 fabD 238 fabD #29 acpM 75 acpM #30 Rv2362c 61 hypothetical protein Rv2362c #31 bex 73 bex #32 Rv2370c 194 hypothetical protein Rv2370c #33 Rv2870c 57 hypothetical protein Rv2870c #34 cdsA 22 cdsA #35 frr 171 frr #36 pyrH 234 pyrH #37 rpsB 283 rpsB #38 Rv2926c 50 hypothetical protein Rv2926c #39 Rv2927c 238 hypothetical protein Rv2927c #40 echA20 54 echA20 #41 Rv3553 97 hypothetical protein Rv3553 Motif number 1 GTGCTAAACTGGCCCGCCGAATGTATAGTA 1 44 1 GGCCCGCCGA 0.971814 -57 TGTGGTATAAAGCGCGCCGGACTTCCGATC 2 132 1 AGCGCGCCGG 0.500713 -169 CGGCACATATTCCGGGGTGCCCTTTGGGGT 2 225 1 TCCGGGGTGC 0.714951 -76 AGATAACGCATCTGCGGCGCGAAATATGAA 3 114 1 TCTGCGGCGC 0.679725 -144 CCCTTGTGGGGCTGCGCTGAAAAGCGACGT 4 73 1 GCTGCGCTGA 0.724587 -74 TTCCCGTGATGGATAAATAAGG 5 3 1 CCCGTGATGG 0.454389 -289 CGTAAGTATCGCGGGGGCGTAAGTCTGGTT 5 44 1 GCGGGGGCGT 0.866554 -248 CTCCGGTTGCTGCGCGCTGGCCGTGACCAA 5 99 0 TGCGCGCTGG 0.815643 -193 AAGGATCTACTGAGCGGCGTTTTTGTCGTT 6 18 0 TGAGCGGCGT 0.678998 -74 CCTTGCGGATCGGCTGGCGGCGTTTTGCTT 6 44 1 CGGCTGGCGG 0.734508 -48 CAGAAACAACGCCGCGATGACGACGGGTAT 8 59 0 GCCGCGATGA 0.892591 -62 ATGGCGAACCCCACCGGCGGCAACAGAAAC 8 82 0 CCACCGGCGG 0.497981 -39 TTCTTTGCGTGGCCCGGCGATCTTATATTG 10 62 0 GGCCCGGCGA 0.987627 -60 AGAACTGCACCCTCCGGTGCAAATGGGATG 10 88 1 CCTCCGGTGC 0.588385 -34 ATAATAACACGGCCTGCCGCAATCGTAAGA 11 52 0 GGCCTGCCGC 0.875742 -53 CTGGCAGACGTCCCCGCCGTTGGTGATTAA 14 27 1 TCCCCGCCGT 0.798367 -63 TTCTCAGGCCTGCCGTTCCGGTGGGC 15 7 1 GGCCTGCCGT 0.813215 -107 GCGCCTTTTTCCTGTGGCGTGAATAATTTC 15 79 1 CCTGTGGCGT 0.413742 -35 AAGACCAAACCGGGCGGCGACGATACCTTG 16 64 1 CGGGCGGCGA 0.928542 -47 CTAACGACATCCCCCGTCGTTGTGTATAGA 23 82 1 CCCCCGTCGT 0.551695 -190 CTTCAACAAGCCGCCGCGTGAGGACGAAC 24 10 1 GCCGCCGCGT 0.520796 -291 ACTGCCCCAACGAGTGGCGTCTCCCCGGTA 24 42 0 CGAGTGGCGT 0.491201 -259 AAACATGAGCGGCCCGACGGGAAATTCGAT 24 219 1 GGCCCGACGG 0.940041 -82 ACAGCTCGGCGGCCTGGTGGCCAGGATCGT 24 255 1 GGCCTGGTGG 0.89968 -46 TGGGAGTGGCGATCCCTTACCC 24 289 0 GGAGTGGCGA 0.810057 -12 CTCAGGGCGGGCTCCGTCGGCGTGTCGTCG 25 24 1 GCTCCGTCGG 0.444326 -58 CTATCTGCGTGGCGCGGTGGTTTCTCGCG 27 10 0 GGCGCGGTGG 0.982305 -119 TTTTGCACCGTCGGCGGCGAAGCTCTTCTA 27 97 0 TCGGCGGCGA 0.536234 -32 GGACCCCCTCTGACCGGCGAGGGAATCTAT 28 34 0 TGACCGGCGA 0.726195 -205 CTTTCCGGGGCCCCTGCTGGACCCCCTCTG 28 52 0 CCCCTGCTGG 0.619527 -187 AAAGATACCAGGGGCGCCGTCGGACGGAAA 28 78 1 GGGGCGCCGT 0.902225 -161 GACAACAGGTCGCGGGACGATCTCAAAAAC 28 116 1 CGCGGGACGA 0.662568 -123 AAGACGGTTTTGCGCGGTGTAACAGATTAT 28 199 0 TGCGCGGTGT 0.833853 -40 ATCGCGGGTATCCGCGCCGATAGTCTCGTA 30 15 0 TCCGCGCCGA 0.890606 -47 GGCGCGGATACCCGCGATGTCGTGGCGGGG 30 27 1 CCCGCGATGT 0.652975 -35 GCGATGTCGTGGCGGGGTGCAAAACTATTG 30 40 1 GGCGGGGTGC 0.926293 -22 GCGGGCCGTGCGCCTGCCGAGTCGTCGACA 32 32 0 CGCCTGCCGA 0.744275 -163 GCAGGCGCACGGCCCGCTGCCGCCGCGGTG 32 45 1 GGCCCGCTGC 0.933754 -150 GCCCGCTGCCGCCGCGGTGGGTAACCGTTC 32 56 1 GCCGCGGTGG 0.973261 -139 ACGTTTAGCCGGTGTGGCGCGTTCGGGATT 32 94 0 GGTGTGGCGC 0.730606 -101 TACTCCTTCAGCCGTGGTGGACGTTTAGCC 32 114 0 GCCGTGGTGG 0.928699 -81 GCGCTGCTTCGCGCCGGCGACGATGCAGAG 35 20 1 GCGCCGGCGA 0.532883 -152 GATGCAGAGCGCAGCGATGAGGAGGAGCGG 35 41 1 GCAGCGATGA 0.601757 -131 GCGATGAGGAGGAGCGGCGCAGATGGTTGG 35 54 1 GGAGCGGCGC 0.936571 -118 CAGATGGTTGGCGCCGGCGACGATGCAGAG 35 73 1 GCGCCGGCGA 0.532883 -99 GATGCAGAGCGCAGCGATGAGGAGGAGCGG 35 94 1 GCAGCGATGA 0.601757 -78 GCGATGAGGAGGAGCGGCGCAGATGGTTGG 35 107 1 GGAGCGGCGC 0.936571 -65 CAGATGGTTGGCGCCGGCGACGATGCAGAG 35 126 1 GCGCCGGCGA 0.532883 -46 GATGCAGAGCGCAGCGATGAGGAGGAGCGG 35 147 1 GCAGCGATGA 0.601757 -25 GCGATGAGGAGGAGCGGCGCAG 35 160 1 GGAGCGGCGC 0.936571 -12 CTTTGTTGCTCGAGCGATGCTCACACCTTG 36 71 1 CGAGCGATGC 0.340017 -164 GCCGAGGCCAGGCCCGTCGACTATCTCAAG 36 97 0 GGCCCGTCGA 0.833901 -138 AACAACGAGGGGCCGGCCGAGGCCAGGCCC 36 112 0 GGCCGGCCGA 0.90802 -123 CTCCGGCGTGGGCGGGGTGCGTTAGTCACG 36 143 0 GGCGGGGTGC 0.926293 -92 CAATAGCCGCGCTCCGGCGTGGGCGGGGTG 36 154 0 GCTCCGGCGT 0.860139 -81 TCCTGGTGGTGCCGGGATGGCACTGTCGTG 36 204 1 GCCGGGATGG 0.73855 -31 CACAAAACGGGCGGCGGCGA 37 1 0 GCGGCGGCGA 0.580801 -283 GCTGTGGATTCCGCTGCCGGGAAAATCACC 37 43 1 CCGCTGCCGG 0.540026 -241 GCCGATGCGAGCTGCGCCGAGTAGTTTACA 37 84 0 GCTGCGCCGA 0.850482 -200 AGCTCGCATCGGCGGGCTGACTTCGCGTGT 37 101 1 GGCGGGCTGA 0.851896 -183 GGAAAGGCGGGCCGCGGTGCAGACACGCGA 37 123 0 GCCGCGGTGC 0.953691 -161 GCAACAGCATGCCGGGGCGGTCCCGCGGCG 37 160 1 GCCGGGGCGG 0.975046 -124 CCGGGGCGGTCCCGCGGCGGTTCCCTTCGG 37 171 1 CCCGCGGCGG 0.957834 -113 CCTGGCGTCTGCCGCGATGCCGGACCCGGG 37 210 0 GCCGCGATGC 0.886608 -74 CTGAAGCCGGGCCCTGGCGTCTGCCGCGAT 37 222 0 GCCCTGGCGT 0.916209 -62 CTTCAGCCGATGCCGGGCGAACAACCGACA 37 246 1 TGCCGGGCGA 0.808685 -38 TTGATCCTTGCGCCGGGTGAATGGTG 38 7 0 CGCCGGGTGA 0.794577 -44 CGTTGGGCGTTGGCCGGCGCTTGATCCTTG 38 27 0 TGGCCGGCGC 0.774079 -24 GCCGCGTTGGGCGTTGGCCG 38 41 0 GCCGCGTTGG 0.790294 -10 GTAGACCGTTCGGCGGCTGACGGGTGAGCC 39 60 0 CGGCGGCTGA 0.364815 -179 CAGATCACGCGGCCTGCTGGGCGCGTGTCG 39 89 0 GGCCTGCTGG 0.794515 -150 TATTCGACGAGCCCGGGCGACCACTCAGAT 39 114 0 GCCCGGGCGA 0.960889 -125 TGCACTGGTGGCGCCGGTGTGTCGGGACAC 39 151 0 GCGCCGGTGT 0.731048 -88 GTTACCAGTGTGCCTGGTGTTTCGTCTGTG 39 183 0 TGCCTGGTGT 0.447373 -56 CACTGCATTGTCGGCGGTGGCT 41 86 1 TCGGCGGTGG 0.49212 -12 ********** Masking position 9 Map Score: 95.0041 Number of sites scoring better than the average of aligned sites = 14840 Number in coding regions = 14296 Number in noncoding regions = 544 Number of orfs with sites within 600 bp upstream = 404 Fraction of orfs with sites within 600 bp upstream = 0.0648892 Motif number 2 GCGAAGATAACGCATCTGCGGCGCGAAATATG 3 110 1 CGCTCGCGGC 0.788042 -148 ATTCAGCTAACCCTTGTGGGGCTGCGCTGAAA 4 63 1 CCCTGGGGGC 0.699759 -84 GTCACGGCCAGCGCGCAGCAACCGGAGCGTAC 5 102 1 GCGGCGCAAC 0.750937 -190 CGTGAGGATGGCGAGCACTGCCCGGGGCCAAA 5 141 1 GCGGCCTGCC 0.641881 -151 AATGGCGAACCCCACCGGCGGCAACAGAAACA 8 81 0 CCCCCGCGGC 0.693679 -40 GCAGTTCTTTGCGTGGCCCGGCGATCTTATAT 10 64 0 GCGGGCCGGC 0.991012 -58 GAGAGAAAAAACAAGGCCCACCGGAACGGCAG 15 20 0 ACAGGCCACC 0.38783 -94 AAAGACCAAACCGGGCGGCGACGATACCTTGA 16 63 1 CCGGCGCGAC 0.905684 -48 CTGCGAGTTCGCTGGCAGCGTCCTG 17 4 0 GCTGCGCGTC 0.711681 -64 CTATAGATGACCGAGCGGCAGCCTGTACGATT 24 122 0 CCGGCGCAGC 0.973122 -179 TGCACTCAGGGCGGGCTCCGTCGGCGTGTCGT 25 20 1 GCGGCCCGTC 0.971922 -62 GTGGCTATCTGCGTGGCGCGGTGGTTTCTCGC 27 12 0 GCGGGGCGGT 0.857017 -117 AATCTGCATCGCGAGGTCGGCCACCTTGCCAG 27 54 1 GCGGGCGGCC 0.936055 -75 CATATTTTGCACCGTCGGCGGCGAAGCTCTTC 27 99 0 ACCTCGCGGC 0.874692 -30 CGCCGGTCAGAGGGGGTCCAGCAGGGGCCCCG 28 45 1 AGGGGCCAGC 0.754052 -194 CCGGAAAGATACCAGGGGCGCCGTCGGACGGA 28 74 1 ACCGGGCGCC 0.932859 -165 CGACATCGCGGGTATCCGCGCCGATAGTCTCG 30 17 0 GGTTCGCGCC 0.252212 -45 ACGACTCGGCAGGCGCACGGCCCGCTGCCGCC 32 37 1 AGGGCCGGCC 0.657981 -158 GGTTACCCACCGCGGCGGCAGCGGGCCGTGCG 32 50 0 CGCGCGCAGC 0.801348 -145 TTGCCTAGGTGCGTTGTGCACCACGTTCTGGG 32 160 0 GCGTGGCACC 0.808374 -35 ATCGTCGCCGGCGCGAAGCAGCGCGTAGTCCC 35 12 0 GCGGAGCAGC 0.621491 -160 CCTCATCGCTGCGCTCTGCATCGTCGCCGGCG 35 31 0 GCGTCGCATC 0.68741 -141 CGCAGCGATGAGGAGGAGCGGCGCAGATGGTT 35 50 1 AGGGGGCGGC 0.951661 -122 CCTCATCGCTGCGCTCTGCATCGTCGCCGGCG 35 84 0 GCGTCGCATC 0.68741 -88 CGCAGCGATGAGGAGGAGCGGCGCAGATGGTT 35 103 1 AGGGGGCGGC 0.951661 -69 CCTCATCGCTGCGCTCTGCATCGTCGCCGGCG 35 137 0 GCGTCGCATC 0.68741 -35 CGCAGCGATGAGGAGGAGCGGCGCAG 35 156 1 AGGGGGCGGC 0.951661 -16 GCCGGCCGAGGCCAGGCCCGTCGACTATCTCA 36 99 0 GCCGGCCGTC 0.91154 -136 CACGCAACAACGAGGGGCCGGCCGAGGCCAGG 36 115 0 CGAGGCCGGC 0.750467 -120 TCCGGCGTGGGCGGGGTGCGTTAGTCACGCAA 36 140 0 GCGGGGCGTT 0.557948 -95 GCCTCAATAGCCGCGCTCCGGCGTGGGCGGGG 36 156 0 CCGGCCCGGC 0.991427 -79 ACAGTGCCATCCCGGCACCACCAGGACGGCAT 36 198 0 CCCGCCCACC 0.836309 -37 TGTCCACAAAACGGGCGGCGGCGA 37 3 0 ACGGCGCGGC 0.988266 -281 CGGGAAAATCACCAGCTGGGTCGGTGTAAACT 37 60 1 ACCGCGGGTC 0.616212 -224 GCCCGCCGATGCGAGCTGCGCCGAGTAGTTTA 37 86 0 GCGGCGCGCC 0.991569 -198 CGTGTCTGCACCGCGGCCCGCCTTTCCGGGAT 37 126 1 CCGGGCCGCC 0.97899 -158 ATCCGCAACAGCATGCCGGGGCGGTCCCGCGG 37 156 1 GCAGCGGGGC 0.855761 -128 GGGATTTCCTCCCGGGTCCGGCATCGCGGCAG 37 200 1 CCCGGCCGGC 0.965003 -84 GCGGCAGACGCCAGGGCCCGGCTTCAGCCGAT 37 225 1 CCAGGCCGGC 0.913496 -59 CCGGCTTCAGCCGATGCCGGGCGAACAACCGA 37 242 1 CCGTGCGGGC 0.805595 -42 GCCGCGTTGGGCGTTGGCCGGCGCTTGATCCT 38 29 0 GCGTGCCGGC 0.963977 -22 TACGTTGTCGGCACGCTCGGGCAAGATCGCCC 39 18 1 GCAGCCGGGC 0.80523 -221 GTGTCGTAGACCGTTCGGCGGCTGACGGGTGA 39 63 0 CCGTCGCGGC 0.970815 -176 TTCATATTCGACGAGCCCGGGCGACCACTCAG 39 116 0 ACGGCCGGGC 0.931124 -123 GTCCCGACACACCGGCGCCACCAGTGCAGTCA 39 153 1 ACCGCCCACC 0.684648 -86 CCCCGCAAGCGGGAGGTGCGCCCACATCGCTT 41 28 1 GGGGGGCGCC 0.963699 -70 *** ** ***** Masking position 12 Map Score: 65.439 Number of sites scoring better than the average of aligned sites = 9328 Number in coding regions = 8788 Number in noncoding regions = 540 Number of orfs with sites within 600 bp upstream = 345 Fraction of orfs with sites within 600 bp upstream = 0.0554128 Motif number 3 CTTCATATTTCGCGCCGCAGATGCGTTATC 3 115 0 CGCGCCGCAG 0.826765 -143 GGGCCATATGCAGGCCCCCTAACCAAACGT 3 174 0 CAGGCCCCCT 0.661678 -84 TGGTCACGGCCAGCGCGCAGCAACCGGAGC 5 100 1 CAGCGCGCAG 0.645049 -192 CAGTTCTTTGCGTGGCCCGGCGATCTTATA 10 65 0 CGTGGCCCGG 0.934293 -57 AAGACCAAACCGGGCGGCGACGATACCTTG 16 64 1 CGGGCGGCGA 0.586408 -47 GCATTTTGTGCAAATCGCGG 18 1 0 CAAATCGCGG 0.497309 -210 AAAAAGTGGTCGAACCGCGGAGTTACTTT 20 10 0 CGAACCGCGG 0.925371 -146 CTTCAACAAGCCGCCGCGTGAGGACG 24 7 1 CAAGCCGCCG 0.931634 -294 TATAGATGACCGAGCGGCAGCCTGTACGAT 24 123 0 CGAGCGGCAG 0.713384 -178 TCCTGGCCACCAGGCCGCCGAGCTGTCTGG 24 251 0 CAGGCCGCCG 0.966628 -50 AACGTGCACTCAGGGCGGGCTCCGTCGGCG 25 16 1 CAGGGCGGGC 0.57798 -66 TGGCTATCTGCGTGGCGCGGTGGTTTCTCG 27 13 0 CGTGGCGCGG 0.973276 -116 GGTATCTTTCCGGGGCCCCTGCTGGACCCC 28 57 0 CGGGGCCCCT 0.550108 -182 GAAAGATACCAGGGGCGCCGTCGGACGGAA 28 77 1 AGGGGCGCCG 0.578699 -162 ATCCAGACAACAGGTCGCGGGACGATCTCA 28 111 1 CAGGTCGCGG 0.950965 -128 TTGTTCTGGCCGAGTCCGCGG 29 2 0 CGAGTCCGCG 0.356826 -74 CCCGCGATGTCGTGGCGGGGTGCAAAACTA 30 37 1 CGTGGCGGGG 0.917156 -25 CGCGCTGCTTCGCGCCGGCGACGATGCAGA 35 19 1 CGCGCCGGCG 0.764595 -153 GGCGACGATGCAGAGCGCAGCGATGAGGAG 35 35 1 CAGAGCGCAG 0.811968 -137 GGCGACGATGCAGAGCGCAGCGATGAGGAG 35 88 1 CAGAGCGCAG 0.811968 -84 GGCGACGATGCAGAGCGCAGCGATGAGGAG 35 141 1 CAGAGCGCAG 0.811968 -31 CACGCAACAACGAGGGGCCGGCCGAGGCCA 36 117 0 CGAGGGGCCG 0.825663 -118 CGCGCTCCGGCGTGGGCGGGGTGCGTTAGT 36 147 0 CGTGGGCGGG 0.487018 -88 CCGCCCACGCCGGAGCGCGGCTATTGAGGC 36 158 1 CGGAGCGCGG 0.978118 -77 GTCCACAAAACGGGCGGCGGCGA 37 4 0 CGGGCGGCGG 0.973086 -280 CACGCGAAGTCAGCCCGCCGATGCGAGCTG 37 100 0 CAGCCCGCCG 0.79468 -184 CCCGGAAAGGCGGGCCGCGGTGCAGACACG 37 126 0 CGGGCCGCGG 0.988384 -158 CATGCTGTTGCGGATCCCGGAAAGGCGGGC 37 141 0 CGGATCCCGG 0.764352 -143 TCCGCAACAGCATGCCGGGGCGGTCCCGCG 37 157 1 CATGCCGGGG 0.852327 -127 GCCGCGATGCCGGACCCGGGAGGAAATCCC 37 200 0 CGGACCCGGG 0.856771 -84 CGGCAGACGCCAGGGCCCGGCTTCAGCCGA 37 226 1 CAGGGCCCGG 0.970049 -58 GCGCAAGGATCAAGCGCCGGCCAACGCCCA 38 24 1 CAAGCGCCGG 0.720067 -27 ACGCGGCCTGCTGGGCGCGTGTCGTAGACC 39 83 0 CTGGGCGCGT 0.463245 -156 ACGCGCCCAGCAGGCCGCGTGATCTGAGTG 39 93 1 CAGGCCGCGT 0.914945 -146 TCATATTCGACGAGCCCGGGCGACCACTCA 39 117 0 CGAGCCCGGG 0.881912 -122 ********** Masking position 1 Map Score: 42.5965 Number of sites scoring better than the average of aligned sites = 5052 Number in coding regions = 4831 Number in noncoding regions = 221 Number of orfs with sites within 600 bp upstream = 214 Fraction of orfs with sites within 600 bp upstream = 0.034372 Motif number 4 ATCGGCACATATTCCGGGGTGCCCTTTGGG 2 223 1 ATTCCGGGGT 0.431911 -78 CCGCGTAAGTATCGCGGGGGCGTAAGTCTG 5 41 1 ATCGCGGGGG 0.943353 -251 CGCTCAGTAGATCCTTGCGGATCGGCTGGC 6 32 1 ATCCTTGCGG 0.806932 -60 ACCCGTCGTCATCGCGGCGTTGTTTCTGTT 8 61 1 ATCGCGGCGT 0.945908 -60 TCAATATAAGATCGCCGGGCCACGCAAAGA 10 61 1 ATCGCCGGGC 0.784752 -61 CATTCTTACGATTGCGGCAGGCCGTGTTAT 11 49 1 ATTGCGGCAG 0.580552 -56 CTTTATTGCAATGCTTGCGCCTTTTTCCTG 15 63 1 ATGCTTGCGC 0.500682 -51 GACACGTCTAACCCTGGCGTTAGATGTC 16 93 1 ACCCTGGCGT 0.605054 -18 TTGCAACTAAATCCCGGCAGGTCTTACCAC 18 124 0 ATCCCGGCAG 0.893069 -87 AATATTGCTGCGGATCAGCTCAC 21 50 0 ATTGCTGCGG 0.839025 -13 ACGGTTACCCACCGCGGCGGCAGCGGGCCG 32 54 0 ACCGCGGCGG 0.976552 -141 AATCGTCTTGATGCCTGCGCTTGATGCTAA 33 21 0 ATGCCTGCGC 0.884544 -37 GCTCCTCCTCATCGCTGCGCTCTGCATCGT 35 39 0 ATCGCTGCGC 0.974935 -133 GCTCCTCCTCATCGCTGCGCTCTGCATCGT 35 92 0 ATCGCTGCGC 0.974935 -80 GCTCCTCCTCATCGCTGCGCTCTGCATCGT 35 145 0 ATCGCTGCGC 0.974935 -27 GTCTGCCGGTACCCCTGGGTACCCGGTTCA 36 24 1 ACCCCTGGGT 0.609523 -211 CGACAGTGCCATCCCGGCACCACCAGGACG 36 202 0 ATCCCGGCAC 0.910225 -33 GCGTGTCTGCACCGCGGCCCGCCTTTCCGG 37 125 1 ACCGCGGCCC 0.75923 -159 CCGCAACAGCATGCCGGGGCGGTCCCGCGG 37 158 1 ATGCCGGGGC 0.783847 -126 CCCGAAGGGAACCGCCGCGGGACCGCCCCG 37 172 0 ACCGCCGCGG 0.882392 -112 CGGGTCCGGCATCGCGGCAGACGCCAGGGC 37 212 1 ATCGCGGCAG 0.894535 -72 CCGGCGCTTGATCCTTGCGCCGGGTGAATG 38 14 0 ATCCTTGCGC 0.835772 -37 GTGTCCCGACACACCGGCGCCACCAGTGCA 39 151 1 ACACCGGCGC 0.715844 -88 TGCACTCCTGCGGGTTCGCTACC 40 42 0 ACTCCTGCGG 0.779358 -13 ********** Masking position 1 Map Score: 28.4794 Number of sites scoring better than the average of aligned sites = 3152 Number in coding regions = 3005 Number in noncoding regions = 147 Number of orfs with sites within 600 bp upstream = 140 Fraction of orfs with sites within 600 bp upstream = 0.0224863 Motif number 5 AGTGTACTATACATTCGGCGGGCCAGTTTA 1 48 0 ACATTCGGCG 0.805972 -53 CTTCAGTGGCACGTTTGGCGAAATTCAGAA 2 29 0 ACGTTTGGCG 0.923041 -272 GACACCAATAATTGTTGGCGCTGTGTACAG 2 91 0 ATTGTTGGCG 0.689202 -210 TTCCGGGGTGCCCTTTGGGGTCGGTAATAT 2 234 1 CCCTTTGGGG 0.677315 -67 AAGATAACGCATCTGCGGCGCGAAATATGA 3 113 1 ATCTGCGGCG 0.895259 -145 ACAGGCCGTAAAGTTTGGCGAACAAAAGAT 11 17 0 AAGTTTGGCG 0.690671 -88 GTCGTTAATCACCAACGGCGGGGACGTCTG 14 31 0 ACCAACGGCG 0.748909 -59 GTTGGTGATTAACGACGGCGTTTTGATTAA 14 45 1 AACGACGGCG 0.847676 -45 AAAGACCAAACCGGGCGGCGACGATACCTT 16 63 1 CCGGGCGGCG 0.892352 -48 TGCCAGTTTTATCTTTGGGGACGCATAATG 20 106 0 ATCTTTGGGG 0.711206 -50 TTCTATACACAACGACGGGGGATGTCGTTA 23 83 0 AACGACGGGG 0.608208 -189 GCCAACCTTAAACTTCGGGGGAATATTCTA 23 108 0 AACTTCGGGG 0.80319 -164 GGAGACGCCACTCGTTGGGGCAGTTTTGTA 24 48 1 CTCGTTGGGG 0.637417 -253 CAGGGCGGGCTCCGTCGGCGTGTCGTCGCC 25 26 1 TCCGTCGGCG 0.89668 -56 TCGAGTGTGCACCTACGGCGACGACACGCC 25 42 0 ACCTACGGCG 0.940809 -40 CATATTTTGCACCGTCGGCGGCGAAGCTCT 27 101 0 ACCGTCGGCG 0.99328 -28 GGGGTACGAGACTATCGGCGCGGATACCCG 30 11 1 ACTATCGGCG 0.663248 -51 CCGTGAATGCACGTTCGGCG 31 1 0 ACGTTCGGCG 0.979401 -73 CCCTGTGTTCACGTTCGGCGAGGAAACCGG 31 53 1 ACGTTCGGCG 0.979401 -21 TGCGCTCTGCATCGTCGCCGGCGCGAAGCA 35 24 0 ATCGTCGCCG 0.892878 -148 AGCGGCGCAGATGGTTGGCGCCGGCGACGA 35 66 1 ATGGTTGGCG 0.909464 -106 TGCGCTCTGCATCGTCGCCGGCGCCAACCA 35 77 0 ATCGTCGCCG 0.892878 -95 AGCGGCGCAGATGGTTGGCGCCGGCGACGA 35 119 1 ATGGTTGGCG 0.909464 -53 TGCGCTCTGCATCGTCGCCGGCGCCAACCA 35 130 0 ATCGTCGCCG 0.892878 -42 TGTCCACAAAACGGGCGGCGGCGA 37 5 0 ACGGGCGGCG 0.956217 -279 CGCGGCGGTTCCCTTCGGGGATTTCCTCCC 37 183 1 CCCTTCGGGG 0.892709 -101 GTGTCGTAGACCGTTCGGCGGCTGACGGGT 39 65 0 CCGTTCGGCG 0.947496 -174 CCCCCACTGCATTGTCGGCGGTGGCT 41 82 1 ATTGTCGGCG 0.89786 -16 ********** Masking position 7 Map Score: 38.2995 Number of sites scoring better than the average of aligned sites = 2877 Number in coding regions = 2766 Number in noncoding regions = 111 Number of orfs with sites within 600 bp upstream = 113 Fraction of orfs with sites within 600 bp upstream = 0.0181497 Motif number 6 TTATCTTCGCTCGCTCATCCCGGTCACTTA 3 90 0 TCGCTCATCC 0.910857 -168 GTCTATAAGGGCTCTCCCCCTTCATATTTC 3 134 0 GCTCTCCCCC 0.945065 -124 TATTTTGAGGCCTTACCCCCCAATAACGCA 18 84 0 CCTTACCCCC 0.834694 -127 GCTCATGTTTCCACTCCTCCGGTTCAACTG 24 199 0 CCACTCCTCC 0.976698 -102 CGGTGGGTAACCGTTCATCCCAATAATCCC 32 70 1 CCGTTCATCC 0.928816 -125 ACCATCTGCGCCGCTCCTCCTCATCGCTGC 35 51 0 CCGCTCCTCC 0.994573 -121 ACCATCTGCGCCGCTCCTCCTCATCGCTGC 35 104 0 CCGCTCCTCC 0.994573 -68 CTGCGCCGCTCCTCCTCATCGCTGC 35 157 0 CCGCTCCTCC 0.994573 -15 CAGGACGGCATCTCACATCCTGCCTCAATA 36 179 0 TCTCACATCC 0.607891 -56 CACCATTCACCCGGCGCAAGGA 38 3 1 CCATTCACCC 0.710578 -48 TGTTCCGCCTCCTCTCCCCCGCAAGCGGGA 41 12 1 CCTCTCCCCC 0.984695 -86 AGCGATGTGGGCGCACCTCCCGCTTGCGGG 41 29 0 GCGCACCTCC 0.945717 -69 ********** Masking position 6 Map Score: 17.0291 Number of sites scoring better than the average of aligned sites = 232 Number in coding regions = 213 Number in noncoding regions = 19 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 7 ACACAGACTGGACGGAAGCGACAATCTCAC 2 172 1 GACGGAAGCG 0.689617 -129 GTCACGGCCAGCGCGCAGCAACCGGAGCGT 5 102 1 GCGCGCAGCA 0.977912 -190 TTGCGGATCGGCTGGCGGCGTTTTGCTTTT 6 46 1 GCTGGCGGCG 0.855771 -46 CTGCGAGTTCGCTGGCAGCGTCCTG 17 6 0 GCTGGCAGCG 0.980332 -62 CACGCAGACTGCGCGCAACATGAGCATTTT 18 24 0 GCGCGCAACA 0.70061 -187 ATAAAAAAGTGGTCGAACCGCGGAGTTACT 20 13 0 GGTCGAACCG 0.579438 -143 ACTCTCCTGGGCTGGCAGCATAAATTCCGC 22 139 0 GCTGGCAGCA 0.924803 -25 ACCACAGGCTGGTCGAAGCGGCTCTGGATC 24 159 0 GGTCGAAGCG 0.946198 -142 ACCAGCCTGTGGTCGAAGCGGATCAGTTGA 24 176 1 GGTCGAAGCG 0.946198 -125 TACCCACCGCGGCGGCAGCGGGCCGTGCGC 32 49 0 GGCGGCAGCG 0.932238 -146 ATCGTCGCCGGCGCGAAGCAGCGCGTAGTC 35 14 0 GCGCGAAGCA 0.933537 -158 CGACGATGCAGAGCGCAGCGATGAGGAGGA 35 37 1 GAGCGCAGCG 0.98098 -135 CGACGATGCAGAGCGCAGCGATGAGGAGGA 35 90 1 GAGCGCAGCG 0.98098 -82 CGACGATGCAGAGCGCAGCGATGAGGAGGA 35 143 1 GAGCGCAGCG 0.98098 -29 ACTCGGCGCAGCTCGCATCGGCGGGCTGAC 37 92 1 GCTCGCATCG 0.838404 -192 TCCCGGAAAGGCGGGCCGCGGTGCAGACAC 37 127 0 GCGGGCCGCG 0.915585 -157 TCTACGACACGCGCCCAGCAGGCCGCGTGA 39 85 1 GCGCCCAGCA 0.753987 -154 CGCTTGCAGGGGACGAAGCGATGTGGGCGC 41 45 0 GGACGAAGCG 0.759133 -53 ********** Masking position 9 Map Score: 24.6139 Number of sites scoring better than the average of aligned sites = 1768 Number in coding regions = 1711 Number in noncoding regions = 57 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 8 CTCGAGAATTCCCGGGAGCTTACATCAGTAAGTGAC 3 62 1 CCGGAGACTC 0.982585 -196 CCCTTATAGACCAGGTAGTACACGTTTGGTTAGGGG 3 153 1 CCGGAGACTT 0.74889 -105 CGGTTTAATGCCGGGCAGATCACATCTCCGAGGATT 3 227 1 CCGGAGACTC 0.982585 -31 CATTTTGGCCCCGGGCAGTGCTCGCCATCCTCACGT 5 140 0 CCGGAGTCCC 0.9959 -152 TTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGC 8 84 1 GCGGGGTCCC 0.946677 -37 CAGGCATTTGACTGGCAGACGTCCCCGCCGTTGGTG 14 16 1 ACGGAGTCCC 0.97586 -74 TCCCCAGTTGCCTGGGGAAAATCCTCACTAAGCTTC 16 28 0 CCGGGATCTC 0.78487 -83 GCAACTAAATCCCGGCAGGTCTTACCACGATTTTAC 18 116 0 CCGGAGTTCC 0.965767 -95 GTGGCGTCTCCCCGGTAGGGTTCGTCCTCACGCGGC 24 23 0 CCGGAGTCTC 0.989269 -278 AACTAGCTGGCAAGGTGGCCGACCTCGCGATGCAGA 27 56 0 CAGGGGACTC 0.690678 -73 GAACGTGAACACAGGGAGACTTTTCCCGCTTTTTTC 31 33 0 ACGGAGTTCC 0.824411 -41 ACCCAGGGGTACCGGCAGACATCTCCGCGAGGG 36 8 0 ACGGAGTCCC 0.97586 -227 TGGTGATTTTCCCGGCAGCGGAATCCACAGCGACGA 37 38 0 CCGGAGAACC 0.907337 -246 GCGAGCTGCGCCGAGTAGTTTACACCGACCCAGCTG 37 72 0 CCAGAGACCC 0.887106 -212 GATGCCGGACCCGGGAGGAAATCCCCGAAGGGAACC 37 189 0 CCGGGGTCCC 0.994531 -95 TTGCAAGATGCCAGGAGGGTGTGGCC 39 223 1 CCGGGGTGCC 0.946677 -16 ** ** ** ** ** Masking position 5 Map Score: 25.2308 Number of sites scoring better than the average of aligned sites = 584 Number in coding regions = 551 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 29 Fraction of orfs with sites within 600 bp upstream = 0.00465789 Motif number 9 ATTGTCGCTTCCGTCCAGTCTGTGTATACGAA 2 165 0 CCGCCGTCTG 0.99307 -136 CTGTGTGTGACTGTCTGGTCTGACTGAGACAA 5 251 1 CTGCTGTCTG 0.86432 -41 GTGATATAGTCTGCGCCATCTGATCGTAAGTA 7 60 1 CTGGCATCTG 0.945264 -126 TCACCAACGGCGGGGACGTCTGCCAGTCAAAT 14 21 0 CGGGAGTCTG 0.920765 -69 GGTATCGTCGCCGCCCGGTTTGGTCTTTCCCC 16 59 0 CCGCCGTTTG 0.908496 -52 TGCTCATGTTGCGCGCAGTCTGCGTGGTTATG 18 28 1 GCGGCGTCTG 0.944833 -183 CAACTAAATCCCGGCAGGTCTTACCACGATTT 18 119 0 CCGCAGTCTT 0.82557 -92 CACCAGGCCGCCGAGCTGTCTGGGCATCGAAT 24 242 0 CCGGCGTCTG 0.993867 -59 ACCCGTCCTATCTGTTCTCGTCGA 25 68 0 CCGCCATCTG 0.983597 -14 CCCTCGCGGAGATGTCTGCCGGTACCCC 36 7 1 CGGGAGTCTG 0.920334 -228 GTAGTTTACACCGACCCAGCTGGTGATTTTCC 37 62 0 CCGCCAGCTG 0.904407 -222 CCTACGTCGTCTGGGCGATCTTGCCCGAGCGT 39 30 0 CTGGCATCTT 0.686029 -209 GCCCAGCAGGCCGCGTGATCTGAGTGGTCGCC 39 97 1 CCGGTATCTG 0.923375 -142 *** ** ***** Masking position 11 Map Score: 12.5785 Number of sites scoring better than the average of aligned sites = 396 Number in coding regions = 378 Number in noncoding regions = 18 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 10 CCCGGGAATTCTCGAGCTTGCCGCCTTTCTGCA 3 45 0 CCGGCTTGCG 0.959202 -213 GAAGATAACGCATCTGCGGCGCGAAATATGAAG 3 112 1 CTCGCGGCGG 0.890619 -146 AAAAAGGAGCCGCCTGAGGGCGGCTTCTTTTTG 4 16 1 CCCGAGGGCG 0.935366 -131 CTCCGGTTGCTGCGCGCTGGCCGTGACCAAACT 5 96 0 TCGGCTGGCG 0.621862 -196 GATCCTTGCGGATCGGCTGGCGGCGTTTTGCTT 6 41 1 GTCGCTGGCG 0.888149 -51 CTTCAGATTCCGGTTTACTTAAT 12 24 0 CTCGATTCCG 0.549746 -13 TCACGCATCTGCGTGATGAAGCTTAGTG 16 6 1 CTCGCGTGAG 0.930326 -105 TTTGGTCTTTCCCCAGTTGCCTGGGGAAAATCC 16 40 0 CCCGTTGCCG 0.621856 -71 CTTCCACTCTCCTGGGCTGGCAGCATAAATTCC 22 141 0 CTGGCTGGCG 0.968372 -23 CTTCAACAAGCCGCCGCGTGAGGACGAACCCTA 24 11 1 CGCGCGTGAG 0.794102 -290 GGAGTGGAAACATGAGCGGCCCGACGGGAAATT 24 212 1 CTGGCGGCCG 0.963937 -89 TGCCCAGACAGCTCGGCGGCCTGGTGGCCAGGA 24 248 1 GTCGCGGCCG 0.873938 -53 GGGCGGGCTCCGTCGGCGTGTCGTCGCCGTAGG 25 28 1 CTCGCGTGTG 0.802315 -54 CCCACCGCGGCGGCAGCGGGCCGTGCGCCTGCC 32 44 0 CGCGCGGGCG 0.977787 -151 CGTCTTGATGCCTGCGCTTGATGCTAAGATGCC 33 15 0 CTGGCTTGAG 0.727895 -43 TCTGCATCGTCGCCGGCGCGAAGCAGCGCGTAG 35 16 0 CCCGCGCGAG 0.755847 -156 CGCGCTCCGGCGTGGGCGGGGTGCGTTAGTCAC 36 144 0 CTGGCGGGGG 0.890613 -91 GTCGCTGTGGATTCCGCTGCCGGGAAAATCACC 37 40 1 ATCGCTGCCG 0.549071 -244 GCGCAGCTCGCATCGGCGGGCTGACTTCGCGTG 37 97 1 CTCGCGGGCG 0.993494 -187 CGCGGGACCGCCCCGGCATGCTGTTGCGGATCC 37 154 0 CCCGCATGCG 0.877204 -130 CGGGGATTTCCTCCCGGGTCCGGCATCGCGGCA 37 198 1 CCCGGGTCCG 0.742941 -86 GGCGATCTTGCCCGAGCGTGCCGACAACGTAGG 39 16 0 CCGGCGTGCG 0.980026 -223 GTGGGCGCACCTCCCGCTTGCGGGGGAGAGGAG 41 20 0 CCCGCTTGCG 0.982488 -78 GTGGGGGTACCACCCGCTTGCAGGGGACGAAGC 41 56 0 CCCGCTTGCG 0.982488 -42 * ** ****** * Masking position 6 Map Score: 30.8326 Number of sites scoring better than the average of aligned sites = 3581 Number in coding regions = 3481 Number in noncoding regions = 100 Number of orfs with sites within 600 bp upstream = 105 Fraction of orfs with sites within 600 bp upstream = 0.0168648 Motif number 11 GGCTCTTTGTGCTAAACTGGCCCGCCGAATG 1 36 1 GCAAACTGGC 0.980552 -65 TCTGAATTTCGCCAAACGTGCCACTGAAGGT 2 30 1 GCAAACGTGC 0.84002 -271 GCTGGCCGTGACCAAACTGCCTGCAACAATA 5 83 0 ACAAACTGCC 0.958576 -209 ACTGCCCGGGGCCAAAATGGCAAATAAAATA 5 157 1 GCAAAATGGC 0.95178 -135 TTCTTGAACGACAAAAACGCCGCTCAGTAGA 6 12 1 ACAAAACGCC 0.682389 -80 TCTGTTGGGGGCAAAAATGGCATTATGCGTC 20 86 1 GCAAAATGGC 0.9524 -70 GTCCCCAAAGATAAAACTGGCATCGAACCAG 20 114 1 ATAAACTGGC 0.706333 -42 GACAACGTGAACGAAGATGGCTA 23 3 0 ACAAGATGGC 0.820931 -269 AACGGAGTGTACAAAACTGCCCCAACGAGTG 24 56 0 ACAAACTGCC 0.958576 -245 TATATAACCAACAAAACGGGCCTGTAAGCTA 28 147 0 ACAAACGGGC 0.967785 -92 CGCCACACCGGCTAAACGTCCACCACGGCTG 32 105 1 GCAAACGTCC 0.768935 -90 TGCGCTTGATGCTAAGATGCCATGC 33 5 0 GCAAGATGCC 0.800549 -53 GACATTGTCCACAAAACGGGCGGCGGCGA 37 9 0 ACAAACGGGC 0.967785 -275 ** ******** Masking position 5 Map Score: 12.2244 Number of sites scoring better than the average of aligned sites = 671 Number in coding regions = 600 Number in noncoding regions = 71 Number of orfs with sites within 600 bp upstream = 54 Fraction of orfs with sites within 600 bp upstream = 0.00867331 Motif number 12 GGCCATATGCAGGCCCCCTAACCAAACGTGT 3 172 0 AGGCCCCTAA 0.370273 -86 ACCAGACTTACGCCCCCGCGATACTTACGCG 5 42 0 CGCCCCGCGA 0.868732 -250 TAATACCCGTCGTCATCGCGGCGTTGTTTCT 8 57 1 CGTCACGCGG 0.777725 -64 GGCGGTCGAACGACCGCCTGGAGATGTTCAC 19 11 0 CGACCCCTGG 0.97341 -77 GGCGGTCGTTCGACCGCCTGAGTTTTATCTT 19 24 1 CGACCCCTGA 0.966727 -64 GCCATAACGGCGACAACGTGAACGAAGATGG 23 14 0 CGACACGTGA 0.962412 -258 GCCGTTATGGCGACAACGTGAATTATTTATG 23 34 1 CGACACGTGA 0.962412 -238 TCGTGTGCCGTGGCAACCTGGAGGTGCCAAC 23 132 0 TGGCACCTGG 0.661753 -140 CTTCAACAAGCCGCCGCGTGAGGACGAACCC 24 11 1 CCGCCCGTGA 0.810133 -290 GATGACCGAGCGGCAGCCTGTACGATTAACC 24 118 0 CGGCACCTGT 0.782089 -183 CCAGACAGCTCGGCGGCCTGGTGGCCAGGAT 24 251 1 CGGCGCCTGG 0.882435 -50 GCAAGGTGGCCGACCTCGCGATGCAGATTCA 27 52 0 CGACCCGCGA 0.965893 -77 CACCCCGCCACGACATCGCGGGTATCCGCGC 30 28 0 CGACACGCGG 0.956785 -34 CGAGACCTCCTGAACGCTAAATG 32 3 1 AGACCCCTGA 0.817143 -192 CTCCCGGGTCCGGCATCGCGGCAGACGCCAG 37 208 1 CGGCACGCGG 0.969 -76 CCGAGCGTGCCGACAACGTAGGTGTCG 39 7 0 CGACACGTAG 0.750456 -232 CGCGCCCAGCAGGCCGCGTGATCTGAGTGGT 39 94 1 AGGCCCGTGA 0.899402 -145 ***** ***** Masking position 7 Map Score: 16.5087 Number of sites scoring better than the average of aligned sites = 1356 Number in coding regions = 1297 Number in noncoding regions = 59 Number of orfs with sites within 600 bp upstream = 60 Fraction of orfs with sites within 600 bp upstream = 0.00963701 Motif number 13 GTAGTTATCTATCCAGTTTCGGTT 13 9 0 GTACTATCCG 0.457637 -16 CAGGACGCTGCCAGCGAACTCGCAGTTTGCAA 17 10 1 GCACGAACTG 0.796795 -58 AGATAAAACTGGCATCGAACCAGGTTCAGACAG 20 122 1 GCACGAACCG 0.976782 -34 AAACTGAAACTGCAGCGAAGCAGTTAGCAGAAC 23 189 1 TCACGAAGCG 0.893904 -83 AAATAAATGCGTCAACAATTCAGCACACGAAAC 23 238 0 GCACAATTCG 0.655602 -34 GTCATCTATAGTCATCGATCCAGAGCCGCTTCG 24 143 1 GCACGATCCG 0.988963 -158 TCCCTTACCCGGTAACGATCCTGGCCACCAGGC 24 266 0 GTACGATCCG 0.927592 -35 GAAGCTCTTCTACACCGAACTAGCTGGCAAGGT 27 76 0 TCACGAACTG 0.439871 -53 AGCATCGACAGCAATGCCGTGTCATAGAT 28 7 1 GCACAATGCG 0.951023 -232 GCTTCGCGCCGGCGACGATGCAGAGCGCAGCGA 35 25 1 GCGCGATGCG 0.9803 -147 GGTTGGCGCCGGCGACGATGCAGAGCGCAGCGA 35 78 1 GCGCGATGCG 0.9803 -94 GGTTGGCGCCGGCGACGATGCAGAGCGCAGCGA 35 131 1 GCGCGATGCG 0.9803 -41 CCGAGTAGTTTACACCGACCCAGCTGGTGATTT 37 65 0 TCACGACCCG 0.754945 -219 CCCTGGCGTCTGCCGCGATGCCGGACCCGGGAG 37 208 0 TCCCGATGCG 0.738934 -76 ACACACCGGCGCCACCAGTGCAGTCACAGACGA 39 159 1 GCACAGTGCG 0.698026 -80 TGCTTGCTTAGGTAGCGAACCCGCAGGAGTGCA 40 32 1 GTACGAACCG 0.857439 -23 AGCCACCGCCGACAATGCAGTGGGGGTACC 41 78 0 GCGCAATGCG 0.915136 -20 * ** ****** * Masking position 13 Map Score: 18.3027 Number of sites scoring better than the average of aligned sites = 1015 Number in coding regions = 970 Number in noncoding regions = 45 Number of orfs with sites within 600 bp upstream = 40 Fraction of orfs with sites within 600 bp upstream = 0.00642467 Motif number 14 ATACCACAAATACGTCGTGGACACCAATAA 2 110 0 TACGTCGTGG 0.663269 -191 TAAGGTCAGATATGCCGTGGTTTTACACGG 7 102 1 TATGCCGTGG 0.898523 -84 ATGAGATAAATCTCCCGTGGCTAACGACAT 23 62 1 TCTCCCGTGG 0.952266 -210 GCTAACGACATCCCCCGTCGTTGTGTATAG 23 81 1 TCCCCCGTCG 0.857917 -191 CGCTGTTTCGTGTGCCGTGGCAACCTGGAG 23 140 0 TGTGCCGTGG 0.881548 -132 GATAGCCACTTCCTCCGTGAATCTGCATCG 27 35 1 TCCTCCGTGA 0.756062 -94 CCCGCTTTTTTCCGCCGTGAATGCACGTTC 31 15 0 TCCGCCGTGA 0.972584 -59 ACGGCCCGCTGCCGCCGCGGTGGGTAACCG 32 53 1 GCCGCCGCGG 0.939182 -142 GTTTACTCCTTCAGCCGTGGTGGACGTTTA 32 117 0 TCAGCCGTGG 0.945854 -78 ACTTCCCCGTGGAATGCAATCG 33 46 0 TTCCCCGTGG 0.843845 -12 ATAGCCGCGCTCCGGCGTGGGCGGGGTGCG 36 152 0 TCCGGCGTGG 0.949872 -83 CCCGAAGGGAACCGCCGCGGGACCGCCCCG 37 172 0 ACCGCCGCGG 0.912428 -112 GGCCCTGGCGTCTGCCGCGATGCCGGACCC 37 213 0 TCTGCCGCGA 0.852429 -71 ********** Masking position 6 Map Score: 10.4608 Number of sites scoring better than the average of aligned sites = 670 Number in coding regions = 650 Number in noncoding regions = 20 Number of orfs with sites within 600 bp upstream = 19 Fraction of orfs with sites within 600 bp upstream = 0.00305172 Motif number 15 CCGAATGTATAGTACACTTCGGTTGGATAGG 1 60 1 AGTACACTCG 0.881454 -41 CGTCTGATGCTGTACACAGCGCCAACAATTA 2 82 1 TGTACACACG 0.981428 -219 CAATTATTGGTGTCCACGACGTATTTGTGGT 2 107 1 TGTCCACGCG 0.863439 -194 CACGTACTTTTGTACGCTCCGGTTGCTGCGC 5 114 0 TGTACGCTCG 0.916808 -178 ATGAGCATTTTGTGCAAATCGCGG 18 4 0 TGTGCAAACG 0.817025 -207 TTCAACATTTTATACACTACGAAAACCATCG 18 158 1 TATACACTCG 0.901332 -53 GGGAATATTCTATACACAACGACGGGGGATG 23 89 0 TATACACACG 0.901332 -183 GGGGCAGTTTTGTACACTCCGTTTACATCGT 24 64 1 TGTACACTCG 0.981428 -237 TAATATGTTGTGTACAAATCGAACTGACGGG 29 39 0 TGTACAAACG 0.901332 -37 CTAGGTGCGTTGTGCACCACGTTCTGGGGAA 32 157 0 TGTGCACCCG 0.920861 -38 ******** ** Masking position 3 Map Score: 5.57609 Number of sites scoring better than the average of aligned sites = 101 Number in coding regions = 86 Number in noncoding regions = 15 Number of orfs with sites within 600 bp upstream = 16 Fraction of orfs with sites within 600 bp upstream = 0.00256987