AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i294_ecoli_mtub_300.orf -o294_ecoli_mtub_300.ace -a/home/amcguire/genomes/ORF_ecoli.txt -z/home/amcguire/genomes/ecoli.fna -g0.58 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.58 maxlen = 30 weight = 0.8 exclude = 1 Purged sequences: kasB 30 kasB Input sequences: #1 yabB 300 orf, hypothetical protein #2 murC 53 L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase #3 ftsZ 60 cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase #4 lpxC 100 UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis #5 rpsB 300 30S ribosomal subunit protein S2 #6 tsf 257 protein chain elongation factor EF-Ts #7 pyrH 146 uridylate kinase #8 frr 291 ribosome releasing factor #9 yaeM 91 putative ATP-binding component of a transport system #10 yaeS 185 orf, hypothetical protein #11 cdsA 120 CDP-diglyceride synthetase #12 yaeT 29 orf, hypothetical protein #13 hlpA 121 histone-like protein, located in outer membrane or nucleoid #14 fabZ 104 (3R)-hydroxymyristol acyl carrier protein dehydratase #15 dnaE 36 DNA polymerase III, alpha subunit #16 lnt 24 apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane #17 ybeX 89 putative transport protein #18 ybeZ 113 putative ATP-binding protein in pho regulon #19 yleA 145 orf, hypothetical protein #20 yceD 159 orf, hypothetical protein #21 rpmF 51 50S ribosomal subunit protein L32 #22 plsX 110 glycerolphosphate auxotrophy in plsB background #23 fabH 67 3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase #24 acpP 210 acyl carrier protein #25 fabF 87 3-oxoacyl-[acyl-carrier-protein] synthase II #26 accD 155 acetylCoA carboxylase, carboxytransferase component, beta subunit #27 dedA 82 orf, hypothetical protein #28 usg 65 putative PTS system enzyme II A component #29 pdxB 98 erythronate-4-phosphate dehyrogenase #30 ucpA 62 putative oxidoreductase #31 yfeT 163 orf, hypothetical protein #32 rnc 271 RNase III, ds RNA #33 lepA 197 GTP-binding elongation factor, may be inner membrane protein #34 rseA 32 sigma-E factor, negative regulatory protein #35 rpoE 300 RNA polymerase, sigma-E factor; heat shock and oxidative stress #36 fadD30 300 fadD30 #37 fabH 81 fabH #38 accD3 26 accD3 #39 Rv1348 300 hypothetical protein Rv1348 #40 fabG2 128 fabG2 #41 aceE 51 aceE #42 Rv2242 59 hypothetical protein Rv2242 #43 fabD 238 fabD #44 acpM 75 acpM #45 Rv2362c 61 hypothetical protein Rv2362c #46 bex 73 bex #47 Rv2370c 194 hypothetical protein Rv2370c #48 Rv2870c 57 hypothetical protein Rv2870c #49 cdsA 22 cdsA #50 frr 171 frr #51 pyrH 234 pyrH #52 rpsB 283 rpsB #53 Rv2926c 50 hypothetical protein Rv2926c #54 Rv2927c 238 hypothetical protein Rv2927c #55 echA20 54 echA20 #56 Rv3553 97 hypothetical protein Rv3553 Motif number 1 TGTGCTAAACTGGCCCGCCGAATGTATAGT 4 43 1 TGGCCCGCCG 0.859948 -58 TGGTATAAAGCGCGCCGGACTTCCGATCCA 5 134 1 CGCGCCGGAC 0.935385 -167 GCACATATTCCGGGGTGCCCTTTGGGGTCG 5 227 1 CGGGGTGCCC 0.834601 -74 CTTCATATTTCGCGCCGCAGATGCGTTATC 6 115 0 CGCGCCGCAG 0.952565 -143 ACCCTTGTGGGGCTGCGCTGAAAAGCGACG 7 72 1 GGCTGCGCTG 0.777011 -75 ACCAGACTTACGCCCCCGCGATACTTACGC 8 43 0 CGCCCCCGCG 0.620373 -249 CCGGTTGCTGCGCGCTGGCCGTGACCAAAC 8 97 0 CGCGCTGGCC 0.959612 -195 TACTTTTGTACGCTCCGGTTGCTGCGCGCT 8 111 0 CGCTCCGGTT 0.641307 -181 ACAGAAACAACGCCGCGATGACGACGGGTA 11 60 0 CGCCGCGATG 0.550386 -61 GTTCTTTGCGTGGCCCGGCGATCTTATATT 13 63 0 TGGCCCGGCG 0.871175 -59 AATAATAACACGGCCTGCCGCAATCGTAAG 14 53 0 CGGCCTGCCG 0.875242 -52 ACTGGCAGACGTCCCCGCCGTTGGTGATTA 17 26 1 GTCCCCGCCG 0.855144 -64 AATTTCCTTATAGGCCGGTGA 18 103 1 TAGGCCGGTG 0.548122 -11 TCAAGGTATCGTCGCCGCCCGGTTTGGTCT 22 65 0 GTCGCCGCCC 0.901509 -46 TTCTCTTTTTCTCGCCGCCCT 35 2 0 CTCGCCGCCC 0.954503 -299 AGAGAAGTTACTGGCTGGTGGAGGATTAGG 35 26 1 CTGGCTGGTG 0.556689 -275 TTCGTCCTCACGCGGCGGCTTGTTGAAG 36 9 0 CGCGGCGGCT 0.887008 -292 GTTAATCGTACAGGCTGCCGCTCGGTCATC 36 119 1 CAGGCTGCCG 0.708533 -182 GCTTCGACCACAGGCTGGTCGAAGCGGCTC 36 165 0 CAGGCTGGTC 0.474389 -136 AATTTCCCGTCGGGCCGCTCATGTTTCCAC 36 215 0 CGGGCCGCTC 0.975045 -86 TCCTGGCCACCAGGCCGCCGAGCTGTCTGG 36 251 0 CAGGCCGCCG 0.94453 -50 CACGCCGACGGAGCCCGCCCTGAGTGCACG 37 18 0 GAGCCCGCCC 0.674872 -64 ACGGCGACGACACGCCGACGGAGCCCGCCC 37 28 0 CACGCCGACG 0.643295 -54 TCAGCGCGGTCGCGGCGCAGCTCGGGGTAT 39 173 1 CGCGGCGCAG 0.811023 -128 AACGGCGTCGCGCTCCGCCGATACCCCGAG 39 193 0 CGCTCCGCCG 0.970118 -108 GACGCCGTTGCACGCCGGTTGGCCGGTAAC 39 214 1 CACGCCGGTT 0.661619 -87 GGTCCTCTCTCGCGGCGGCCTAATCCGCCA 39 277 0 CGCGGCGGCC 0.670373 -24 GCTATCTGCGTGGCGCGGTGGTTTCTCGCG 40 11 0 TGGCGCGGTG 0.609147 -118 ATTTTGCACCGTCGGCGGCGAAGCTCTTCT 40 98 0 GTCGGCGGCG 0.802703 -31 AGGCGGTCGGCTCGCCGGCG 42 1 0 CTCGCCGGCG 0.972231 -59 CATAGATTCCCTCGCCGGTCAGAGGGGGTC 43 33 1 CTCGCCGGTC 0.923265 -206 GTATCTTTCCGGGGCCCCTGCTGGACCCCC 43 56 0 GGGGCCCCTG 0.49422 -183 CTTTCCGTCCGACGGCGCCCCTGGTATCTT 43 79 0 GACGGCGCCC 0.738716 -160 GGCAGGCGCACGGCCCGCTGCCGCCGCGGT 47 44 1 CGGCCCGCTG 0.950256 -151 GGCCCGCTGCCGCCGCGGTGGGTAACCGTT 47 55 1 CGCCGCGGTG 0.517654 -140 GACGTTTAGCCGGTGTGGCGCGTTCGGGAT 47 95 0 CGGTGTGGCG 0.545758 -100 GGGGACTACGCGCTGCTTCGCGCCGGCG 50 9 1 CGCGCTGCTT 0.619722 -163 CGCGCTGCTTCGCGCCGGCGACGATGCAGA 50 19 1 CGCGCCGGCG 0.988469 -153 TCCTCCTCATCGCTGCGCTCTGCATCGTCG 50 37 0 CGCTGCGCTC 0.838926 -135 GCCAACCATCTGCGCCGCTCCTCCTCATCG 50 55 0 TGCGCCGCTC 0.906471 -117 GCAGATGGTTGGCGCCGGCGACGATGCAGA 50 72 1 GGCGCCGGCG 0.986366 -100 TCCTCCTCATCGCTGCGCTCTGCATCGTCG 50 90 0 CGCTGCGCTC 0.838926 -82 GCCAACCATCTGCGCCGCTCCTCCTCATCG 50 108 0 TGCGCCGCTC 0.906471 -64 GCAGATGGTTGGCGCCGGCGACGATGCAGA 50 125 1 GGCGCCGGCG 0.986366 -47 TCCTCCTCATCGCTGCGCTCTGCATCGTCG 50 143 0 CGCTGCGCTC 0.838926 -29 CTGCGCCGCTCCTCCTCATCG 50 161 0 TGCGCCGCTC 0.906471 -11 GATAGTCGACGGGCCTGGCCTCGGCCGGCC 51 102 1 GGGCCTGGCC 0.688012 -133 GCAACAACGAGGGGCCGGCCGAGGCCAGGC 51 114 0 GGGGCCGGCC 0.971539 -121 GTGACTAACGCACCCCGCCCACGCCGGAGC 51 144 1 CACCCCGCCC 0.889779 -91 TCAATAGCCGCGCTCCGGCGTGGGCGGGGT 51 155 0 CGCTCCGGCG 0.972543 -80 CCACAAAACGGGCGGCGGCGA 52 2 0 GGCGGCGGCG 0.625751 -282 GTGTAAACTACTCGGCGCAGCTCGCATCGG 52 83 1 CTCGGCGCAG 0.567239 -201 CACGCGAAGTCAGCCCGCCGATGCGAGCTG 52 100 0 CAGCCCGCCG 0.845257 -184 CGGAAAGGCGGGCCGCGGTGCAGACACGCG 52 124 0 GGCCGCGGTG 0.516988 -160 AACAGCATGCCGGGGCGGTCCCGCGGCGGT 52 162 1 CGGGGCGGTC 0.861199 -122 GGGGCGGTCCCGCGGCGGTTCCCTTCGGGG 52 173 1 CGCGGCGGTT 0.859077 -111 GCTGAAGCCGGGCCCTGGCGTCTGCCGCGA 52 223 0 GGCCCTGGCG 0.872969 -61 GCAAGGATCAAGCGCCGGCCAACGCCCAAC 53 26 1 AGCGCCGGCC 0.787741 -25 TCAGATCACGCGGCCTGCTGGGCGCGTGTC 54 90 0 CGGCCTGCTG 0.784989 -149 CTGCACTGGTGGCGCCGGTGTGTCGGGACA 54 152 0 GGCGCCGGTG 0.98277 -87 CCACTGCATTGTCGGCGGTGGCT 56 85 1 GTCGGCGGTG 0.78506 -13 ********** Masking position 7 Map Score: 89.122 Number of sites scoring better than the average of aligned sites = 10428 Number in coding regions = 10002 Number in noncoding regions = 426 Number of orfs with sites within 600 bp upstream = 313 Fraction of orfs with sites within 600 bp upstream = 0.050273 Motif number 2 TTTTAAAACGGTGATGACGATGAGGGATTTTTTC 1 86 1 GTGAGAGGAG 0.974312 -215 GGATGAGCGAGCGAAGATAACGCATCTGCGGCGC 6 100 1 GCGAGAAGCA 0.789243 -158 ACAAAAGTACGTGAGGATGGCGAGCACTGCCCGG 8 132 1 GTGAGAGGAG 0.974312 -160 AAACAACGCCGCGATGACGACGGGTATTAACACA 11 52 0 GCGAGAGGGG 0.980377 -69 ACGCATCTGCGTGATGAAGCTTAGTGAGGATTTT 22 13 1 GTGAGAGTAG 0.826167 -98 CATAACAAATGCGAGGACGTTTCCAGATACCACA 33 35 1 GCGAGAGTCC 0.795382 -163 CTGAGTATCAGCGCGGTCGCGGCGCAGCTCGGGG 39 166 1 GCGCGTGGCG 0.921915 -135 TCGGCGGAGCGCGACGCCGTTGCACGCCGGTTGG 39 202 1 GCGAGCGGCA 0.95794 -99 CGCCCGATCTGAGAAGTCGTGGCGGATTAGGCCG 39 258 1 GAGAGTGGCG 0.917417 -43 GGCCGACCTCGCGATGCAGATTCACGGAGGAAGT 40 42 0 GCGAGCGTCA 0.740526 -87 GCGGATACCCGCGATGTCGTGGCGGGGTGCAAAA 45 30 1 GCGAGTGGCG 0.991099 -32 CTTCGCGCCGGCGACGATGCAGAGCGCAGCGATG 50 26 1 GCGAGAGGAG 0.996245 -146 GCAGAGCGCAGCGATGAGGAGGAGCGGCGCAGAT 50 44 1 GCGAGAGGAG 0.996245 -128 GTTGGCGCCGGCGACGATGCAGAGCGCAGCGATG 50 79 1 GCGAGAGGAG 0.996245 -93 GCAGAGCGCAGCGATGAGGAGGAGCGGCGCAGAT 50 97 1 GCGAGAGGAG 0.996245 -75 GTTGGCGCCGGCGACGATGCAGAGCGCAGCGATG 50 132 1 GCGAGAGGAG 0.996245 -40 GCAGAGCGCAGCGATGAGGAGGAGCGGCGCAG 50 150 1 GCGAGAGGAG 0.996245 -22 GCTTGCGGGGGAGAGGAGGCGGAACAA 56 4 0 GAGAGAGGAA 0.867217 -94 AGGGGACGAAGCGATGTGGGCGCACCTCCCGCTT 56 34 0 GCGAGTGGCA 0.964878 -64 **** ** * *** Masking position 6 Map Score: 36.5057 Number of sites scoring better than the average of aligned sites = 536 Number in coding regions = 458 Number in noncoding regions = 78 Number of orfs with sites within 600 bp upstream = 51 Fraction of orfs with sites within 600 bp upstream = 0.00819146 Motif number 3 GTGTCAGTTTGCGACGCGAGCGGCATTTTAGGAC 1 22 0 GCGACGGGGC 0.870871 -279 ACCTCGGTATGCCTTGTGACTGGCTTGACAAGCT 1 206 1 GCCTTGCGGC 0.646669 -95 TGATTACGGCCTCAGGCGACAGGCACAAATCGGA 3 29 1 CTCACGCGGC 0.912731 -32 TACGAAATGGATCGGAAGTCCGGCGCGCTTTATA 5 137 0 ATCGAGCGGC 0.295792 -164 AAAGGGCACCCCGGAATATGTGCCGATACGTGTG 5 216 0 CCGGTAGGCC 0.346288 -85 CCTCGGAGATGTGATCTGCCCGGCATTAAACCGC 6 226 0 GTGATGCGGC 0.770325 -32 CGCGCTGGCCGTGACCAAACTGCCTGCAACAATA 8 83 0 GTGAAACGCC 0.247265 -209 GTAGATCCTTGCGGATCGGCTGGCGGCGTTTTGC 9 38 1 GCGGCGCGGC 0.984329 -54 ACGTCTGCCAGTCAAATGCCTGGCAAA 17 4 0 GTCATGCGGC 0.730929 -86 TCACCAACGGCGGGGACGTCTGCCAGTCAAATGC 17 19 0 CGGGCGCGCC 0.662248 -71 ACAAGGCCCACCGGAACGGCAGGCCTGAGAA 18 8 0 CCGGCGCGGC 0.990353 -106 CGGTTTATCCCCGATCCAACGGGGAGCACCAA 21 9 0 CCGACACGGG 0.936355 -43 GAGGATTTTCCCCAGGCAACTGGGGAAAGACCAA 22 38 1 CCCACACGGG 0.503654 -73 CTTGCAAACTGCGAGTTCGCTGGCAGCGTCCTG 23 10 0 GCGATCCGGC 0.694896 -58 TCTCCAGGCGGTCGTTCGACCGCCTGAGTTTTAT 25 18 1 GTCGCGCGCC 0.890031 -70 ATCATATATCCCGAATTGACAGGCTTAAAGGAAT 31 58 1 CCGATGCGGC 0.95526 -106 GCCTTAATGCCCGGTTAACCAGGCTTTTAGAAGT 33 158 0 CCGGAACGGC 0.798628 -40 TGTAGAAATGCCCATTTAACTGCCTGAAGAGTAA 35 80 0 CCCATACGCC 0.769208 -221 CCGGGGAGACGCCACTCGTTGGGGCAGTTTTGTA 36 44 1 GCCACGTGGG 0.268255 -257 ACTATAGATGACCGAGCGGCAGCCTGTACGATTA 36 121 0 ACCGCGCGCC 0.915691 -180 GGAAACATGAGCGGCCCGACGGGAAATTCGATGC 36 217 1 GCGGCGCGGA 0.670798 -84 CACCAGGCCGCCGAGCTGTCTGGGCATCGAATTT 36 240 0 CCGATGCGGG 0.875372 -61 CGGTAACGATCCTGGCCACCAGGCCGCCGAGCTG 36 256 0 CCTGCACGGC 0.636684 -45 TTTGGACGAGATCGTCCGACTGGGGCCGACTGGG 39 119 1 ATCGCGCGGG 0.637457 -182 ACCCCGAGCTGCGCCGCGACCGCGCTGATACTCA 39 167 0 GCGCCGCGCG 0.810257 -134 ACGCTGGGTTACCGGCCAACCGGCGTGCAACGGC 39 217 0 ACCGCACGGC 0.676656 -84 CAGCGGTCCTCTCTCGCGGCGGCCTAATCCGCCA 39 277 0 CTCTCGCGCC 0.597076 -24 CTCTTCTACACCGAACTAGCTGGCAAGGTGGCCG 40 71 0 CCGATACGGC 0.872631 -58 CCGAGTTCGGGTGATCCGCGAGGGT 41 37 1 GTGACGGGGG 0.452529 -15 CGCCGGCGAGCCGACCGCCTTTGGCCGAA 42 6 1 GCGACGCGCC 0.970379 -54 CCTGCTGGACCCCCTCTGACCGGCGAGGGAATCT 43 36 0 CCCCTGCGGC 0.743772 -203 TTCACGTTCGGCGAGGAAACCGGC 46 60 1 GCGAAACGGC 0.735826 -14 CTAAATGTCGACGACTCGGCAGGCGCACGGCCCG 47 27 1 ACGACGCGGC 0.951875 -168 CGGTTACCCACCGCGGCGGCAGCGGGCCGTGCGC 47 49 0 CCGCCGCGCG 0.843534 -146 CGTCGCCGGCGCCAACCATCTGCGCCGCTCCTCC 50 61 0 GCCACACGCG 0.84226 -111 CGTCGCCGGCGCCAACCATCTGCGCCGCTCCTCC 50 114 0 GCCACACGCG 0.84226 -58 GAGATGTCTGCCGGTACCCCTGGGTACCCGGTTC 51 19 1 CCGGCCCGGG 0.874352 -216 TAGTCGACGGGCCTGGCCTCGGCCGGCCCCTCGT 51 104 1 GCCTCCCGCC 0.443375 -131 TAGCCGCGCTCCGGCGTGGGCGGGGTGCGTTAGT 51 147 0 CCGGTGGGGG 0.571636 -88 GTAGTTTACACCGACCCAGCTGGTGATTTTCCCG 52 60 0 CCGACACGGT 0.421613 -224 GTTGCGGATCCCGGAAAGGCGGGCCGCGGTGCAG 52 131 0 CCGGAGCGGC 0.925227 -153 GCATGCCGGGGCGGTCCCGCGGCGGTTCCCTTCG 52 166 1 GCGGCCCGCG 0.766956 -118 TGAAGCCGGGCCCTGGCGTCTGCCGCGATGCCGG 52 217 0 CCCTCGCGCC 0.607738 -67 TCATGTGTCGGTTGTTCGCCCGGCATCGGCTGAA 52 247 0 GTTGCGCGGC 0.464274 -37 CACCATTCACCCGGCGCAAGGATCA 53 2 1 ACCACACGGC 0.836981 -49 CGGCGCAAGGATCAAGCGCCGGCCAACGCCCAAC 53 22 1 ATCACGCGCC 0.65579 -29 ACGACGTAGGCTCACCCGTCAGCCGCCGAACGGT 54 52 1 CTCACGCGCC 0.900392 -187 ACGACACGCGCCCAGCAGGCCGCGTGATCTGAGT 54 88 1 CCCAAGCGCG 0.716794 -151 AAATTGTGTCCCGACACACCGGCGCCACCAGTGC 54 146 1 CCGACACGCG 0.897669 -93 GCAGTCACAGACGAAACACCAGGCACACTGGTAA 54 178 1 ACGACACGGC 0.863996 -61 GGGCGCACCTCCCGCTTGCGGGGGAGAGGAGGCG 56 17 0 CCCGTGGGGG 0.4448 -81 **** ** * *** Masking position 12 Map Score: 50.273 Number of sites scoring better than the average of aligned sites = 9339 Number in coding regions = 8741 Number in noncoding regions = 598 Number of orfs with sites within 600 bp upstream = 372 Fraction of orfs with sites within 600 bp upstream = 0.0597494 Motif number 4 ATTTGTGCCTGTCGCCTGAGGCCGTAATCAT 3 28 0 GTCGCCTGGG 0.973544 -33 TCTCGAGCTTGCCGCCTTTCTGCAACTCGAA 6 38 0 GCCGCCTTCT 0.414102 -220 TCAAAAAGGAGCCGCCTGAGGGCGGCTTCTT 7 14 1 GCCGCCTGGG 0.989123 -133 AAAGCAAAACGCCGCCAGCCGATCCGCAAGG 9 44 0 GCCGCCAGCG 0.818526 -48 TGTTTCTGTTGCCGCCGGTGGGGTTCGCCAT 11 81 1 GCCGCCGGGG 0.994486 -40 AAAGAAAAAGGCAGCCTGTGGTTGCCTTTTG 20 103 0 GCAGCCTGGG 0.847529 -57 TCTTTCCCCAGTTGCCTGGGGAAAATCCTCA 22 37 0 GTTGCCTGGG 0.610852 -74 TCATAACCACGCAGACTGCGCGCAACATGAG 24 30 0 GCAGACTGGC 0.468235 -181 TCAACAAGCCGCCGCGTGAGGACGAACCCTA 36 13 1 GCCGCGTGGG 0.973975 -288 AGGCCGCCGAGCTGTCTGGGCATCGAATTTC 36 239 0 GCTGTCTGGC 0.24166 -62 GCGACGACACGCCGACGGAGCCCGCCCTGAG 37 24 0 GCCGACGGGC 0.965969 -58 TCGGCGTGTCGTCGCCGTAGGTGCACACTCG 37 40 1 GTCGCCGTGG 0.918095 -42 ATCTGTTCTCGTCGAGTGTGCACCTACGGCG 37 52 0 GTCGAGTGGC 0.705792 -30 TCCGACTGGGGCCGACTGGGTTGTATGCGCG 39 133 1 GCCGACTGGT 0.657996 -168 GTGCAACGGCGTCGCGCTCCGCCGATACCCC 39 196 0 GTCGCGCTCG 0.540438 -105 AGCGTTCGTGGTCGCCCGATCTGAGAAGTCG 39 246 1 GTCGCCCGTC 0.619305 -55 TGGCAAGGTGGCCGACCTCGCGATGCAGATT 40 54 0 GCCGACCTGC 0.689426 -75 GAGCTTCGCCGCCGACGGTGCAAAATATGAT 40 102 1 GCCGACGGGC 0.965868 -27 CGCCGGCGAGCCGACCGCCTTTGGCCGAAT 42 10 1 GCCGACCGCT 0.493254 -50 TACCAGGGGCGCCGTCGGACGGAAAGTGATC 43 83 1 GCCGTCGGCG 0.908525 -156 CAGACAACAGGTCGCGGGACGATCTCAAAAA 43 114 1 GTCGCGGGCG 0.938064 -125 CACCGCGGCGGCAGCGGGCCGTGCGCCTGCC 47 44 0 GCAGCGGGCG 0.695854 -151 GCCCGCTGCCGCCGCGGTGGGTAACCGTTCA 47 56 1 GCCGCGGTGG 0.919233 -139 GCTCTGCATCGTCGCCGGCGCGAAGCAGCGC 50 20 0 GTCGCCGGGC 0.982125 -152 GCTCTGCATCGTCGCCGGCGCCAACCATCTG 50 73 0 GTCGCCGGGC 0.982125 -99 GCTCTGCATCGTCGCCGGCGCCAACCATCTG 50 126 0 GTCGCCGGGC 0.982125 -46 CCTTGAGATAGTCGACGGGCCTGGCCTCGGC 51 96 1 GTCGACGGCC 0.853581 -139 ACAACGAGGGGCCGGCCGAGGCCAGGCCCGT 51 110 0 GCCGGCCGGG 0.892075 -125 TGCCTCAATAGCCGCGCTCCGGCGTGGGCGG 51 158 0 GCCGCGCTCG 0.744001 -77 GGATGGCACTGTCGTGCGAGGAGTCAG 51 218 1 GTCGTGCGGG 0.624106 -17 TCGCCGCCGCCCGTTTTGTGGAC 52 3 1 GCCGCCGCCG 0.787586 -281 GAAGGGAACCGCCGCGGGACCGCCCCGGCAT 52 168 0 GCCGCGGGCC 0.965698 -116 GCCGCGTTGGGCGTTGGCCGG 53 40 0 GCCGCGTTGG 0.851707 -11 GTGAGCCTACGTCGTCTGGGCGATCTTGCCC 54 36 0 GTCGTCTGGC 0.751446 -203 TCACCCGTCAGCCGCCGAACGGTCTACGACA 54 63 1 GCCGCCGACG 0.714423 -176 CGCCCAGCAGGCCGCGTGATCTGAGTGGTCG 54 96 1 GCCGCGTGTC 0.622361 -143 GATCTGAGTGGTCGCCCGGGCTCGTCGAATA 54 113 1 GTCGCCCGGC 0.965263 -126 CCACTGCATTGTCGGCGGTGGCT 56 85 1 GTCGGCGGGG 0.868622 -13 ******** ** Masking position 4 Map Score: 60.3355 Number of sites scoring better than the average of aligned sites = 3737 Number in coding regions = 3589 Number in noncoding regions = 148 Number of orfs with sites within 600 bp upstream = 136 Fraction of orfs with sites within 600 bp upstream = 0.0218439 Motif number 5 AGCCGCCTGAGGGCGGCTTCTTTTTGTGCCCA 7 23 1 GGGGCTTCTT 0.848818 -124 GCTAACCCTTGTGGGGCTGCGCTGAAAAGCGA 7 68 1 GTGGCTGCGC 0.805898 -79 TGTTGCCGCCGGTGGGGTTCGCCATTGTAACG 11 87 1 GGGGGTTCGC 0.987213 -34 GGCGTCGTATGGGTTCTCATGTTAGTTA 17 72 0 GTGGGTTCTC 0.811722 -18 CTGTAACATTGGCAGGGAGCTTTGCTATTTCT 28 31 1 GGGGGAGCTT 0.652726 -35 CGAAGTTTAAGGTTGGCACCTCCAGGTTGCCA 32 121 1 GGGGCACCTC 0.87495 -151 GCGTCTCCCCGGTAGGGTTCGTCCTCACGCGG 36 24 0 GGGGGTTCGT 0.957933 -277 GCGGCCTGGTGGCCAGGATCGTTACCGGGTAA 36 263 1 GGAGGATCGT 0.567936 -38 TCGTTACCGGGTAAGGGATCGCCACTCCCA 36 281 1 GTGGGATCGC 0.923266 -20 GTGCACTCAGGGCGGGCTCCGTCGGCGTGTCG 37 19 1 GGGGCTCCGT 0.894736 -63 CCCTTAGTTTGGACGAGATCGTCCGACTGGGG 39 112 1 GGGAGATCGT 0.817442 -189 CTGGCAAGGTGGCCGACCTCGCGATGCAGATT 40 54 0 GGGACCTCGC 0.829658 -75 ACCCGAACTCGGTCGGGTTCGCTTGCGCTGTT 41 17 0 GGGGGTTCGC 0.987213 -35 TGGTTGTTCTGGCCGAGTCCGCGG 44 3 0 GGGAGTCCGC 0.891717 -73 CAGGGGTACCGGCAGACATCTCCGCGAGGG 51 9 0 GGGACATCTC 0.789166 -226 GCCTGGCCTCGGCCGGCCCCTCGTTGTTGCGT 51 114 1 GGGGCCCCTC 0.72865 -121 CTCCGGCGTGGGCGGGGTGCGTTAGTCACGCA 51 141 0 GGGGGTGCGT 0.885602 -94 GGCACCACCAGGACGGCATCTCACATCCTGCC 51 185 0 GGGGCATCTC 0.94001 -50 CGCATCGGCGGGCTGACTTCGCGTGTCTGCAC 52 105 1 GGGACTTCGC 0.939086 -179 TTCCTCCCGGGTCCGGCATCGCGGCAGACGCC 52 205 1 GTGGCATCGC 0.909568 -79 CGGCACGCTCGGGCAAGATCGCCCAGACGACG 54 26 1 GGAAGATCGC 0.515637 -213 TGCACTCCTGCGGGTTCGCTACCTAAGCA 55 36 0 CTGGGTTCGC 0.45081 -19 ** ******** Masking position 10 Map Score: 24.4503 Number of sites scoring better than the average of aligned sites = 1194 Number in coding regions = 1146 Number in noncoding regions = 48 Number of orfs with sites within 600 bp upstream = 50 Fraction of orfs with sites within 600 bp upstream = 0.00803084 Motif number 6 CATTTTAGGACATATCTTCCCC 1 1 0 CTATCTCCCC 0.705767 -300 CCAGCCTCACCCCTTATTCCCACTTTGCCCCA 1 278 0 CCTTATCCCA 0.477639 -23 AGGGCGGCTTCTTTTTGTGCCCATCTTGTAAA 7 32 1 CTTTTTGCCC 0.663434 -115 TTGTACGTCGCTTTTCAGCGCAGCCCCACAAG 7 75 0 CTTTCGCGCA 0.524841 -72 TTTTATTTGCCATTTTGGCCCCGGGCAGTGCT 8 154 0 CTTTTGCCCC 0.90955 -138 CGTTCCATCTTTTGTTCGCCAAACTTTACG 14 9 1 CTTTGTCGCC 0.888463 -96 TGTTTTTTCTCTCTTTATCCCCATCTTTATTG 18 39 1 CCTTTTCCCC 0.964836 -75 TCCTCAATTACGGTTTATCCCCGATCCAACGG 21 21 0 CGTTTTCCCC 0.933951 -31 TGAGTTTTATCTTTTTGTCCCACTAGAATCAT 25 42 1 CTTTTTCCCA 0.845125 -46 CCACTAGAATCATTTTTTCCCTCCCTGGAGGA 25 61 1 CTTTTTCCCT 0.623858 -27 CGCATAATGCCATTTTTGCCCCCAACAGACCA 26 83 0 CTTTTGCCCC 0.90955 -73 CATCTTCGTTCACGTTGTCGCCGTTATGGCGA 32 15 1 CCGTTTCGCC 0.896591 -257 ATAAATAATTCACGTTGTCGCCATAACGGCGA 32 32 0 CCGTTTCGCC 0.896591 -240 ACGGTATGAACATTTCCTCGCCTCAATGTTGT 33 75 1 CTTTCTCGCC 0.957473 -123 AGTAACTTCTCTTTTTCTCGCCGCCCT 35 6 0 CTTTTTCGCC 0.961851 -295 GCTCCGTCGGCGTGTCGTCGCCGTAGGTGCAC 37 34 1 CTGTCTCGCC 0.904187 -48 ACTTTTCCCGCTTTTTTCCGCCGTGAATGCAC 46 19 0 CTTTTCCGCC 0.73877 -55 CGGTGGGTAACCGTTCATCCCAATAATCCCGA 47 70 1 CGTTCTCCCA 0.673228 -125 CGCGAAGCAGCGCGTAGTCCCC 50 1 0 CCGTATCCCC 0.7014 -171 ACTCATGTGTCGGTTGTTCGCCCGGCATCGGC 52 251 0 CGTTGTCGCC 0.771057 -33 GCGCCCACATCGCTTCGTCCCCTGCAAGCGGG 56 45 1 CCTTCTCCCC 0.960787 -53 * **** ***** Masking position 5 Map Score: 17.524 Number of sites scoring better than the average of aligned sites = 714 Number in coding regions = 617 Number in noncoding regions = 97 Number of orfs with sites within 600 bp upstream = 81 Fraction of orfs with sites within 600 bp upstream = 0.01301 Motif number 7 GCTCGAGAATTCCCGGGAGCTTACATCAGT 6 61 1 TCCCGGGAGC 0.912653 -197 CGCTCGCTCATCCCGGTCACTTACTGATGT 6 83 0 TCCCGGTCAC 0.542837 -175 GCCATTTTGGCCCCGGGCAGTGCTCGCCAT 8 148 0 CCCCGGGCAG 0.906476 -144 CGTTTTTTATTCCCTGACAGGGTTTACGGT 10 165 0 TCCCTGACAG 0.397525 -21 GAGGATTTTCCCCAGGCAACTGGGGAAAGA 22 38 1 CCCAGGCAAC 0.476809 -73 TGCAACTAAATCCCGGCAGGTCTTACCACG 24 123 0 TCCCGGCAGG 0.984216 -88 ATTTTTTCCCTCCCTGGAGGACAAAC 25 72 1 TCCCTGGAGG 0.816815 -16 AGTGGCGTCTCCCCGGTAGGGTTCGTCCTC 36 30 0 CCCCGGTAGG 0.952365 -271 GCGATCCCTTACCCGGTAACGATCCTGGCC 36 273 0 ACCCGGTAAC 0.501789 -28 CTTTCCGGGGCCCCTGCTGGACCCCCTCTG 43 52 0 CCCCTGCTGG 0.583814 -187 CCAGCAGGGGCCCCGGAAAGATACCAGGGG 43 62 1 CCCCGGAAAG 0.93581 -177 AATGTCGACGACTCGGCAGGCGCACGGCCC 47 30 1 ACTCGGCAGG 0.620587 -165 ACGGGCCTGGCCTCGGCCGGCCCCTCGTTG 51 110 1 CCTCGGCCGG 0.75643 -125 GACAGTGCCATCCCGGCACCACCAGGACGG 51 201 0 TCCCGGCACC 0.747951 -34 CTGGTGATTTTCCCGGCAGCGGAATCCACA 52 45 0 TCCCGGCAGC 0.962137 -239 CTGTTGCGGATCCCGGAAAGGCGGGCCGCG 52 137 0 TCCCGGAAAG 0.900518 -147 CGCGGGACCGCCCCGGCATGCTGTTGCGGA 52 157 0 CCCCGGCATG 0.887806 -127 CGGGAGGAAATCCCCGAAGGGAACCGCCGC 52 184 0 TCCCCGAAGG 0.699752 -100 GCGATGCCGGACCCGGGAGGAAATCCCCGA 52 197 0 ACCCGGGAGG 0.901145 -87 CGCCTCCTCTCCCCCGCAAGCGGGAGGTGC 56 17 1 CCCCCGCAAG 0.890205 -81 ATCGCTTCGTCCCCTGCAAGCGGGTGGTAC 56 53 1 CCCCTGCAAG 0.907235 -45 ********** Masking position 6 Map Score: 15.9176 Number of sites scoring better than the average of aligned sites = 1379 Number in coding regions = 1267 Number in noncoding regions = 112 Number of orfs with sites within 600 bp upstream = 97 Fraction of orfs with sites within 600 bp upstream = 0.0155798 Motif number 8 ATTTGCTTCGCACGTTGGACGTAAAATAAAC 1 141 1 CACGTTGACG 0.946559 -160 AAGTGTACTATACATTCGGCGGGCCAGTTTA 4 48 0 TACATTGGCG 0.728768 -53 CCTTCAGTGGCACGTTTGGCGAAATTCAGAA 5 29 0 CACGTTGGCG 0.987913 -272 CGTATCGGCACATATTCCGGGGTGCCCTTTG 5 220 1 CATATTCGGG 0.757654 -81 TCTCCCCCTTCATATTTCGCGCCGCAGATGC 6 121 0 CATATTCGCG 0.893038 -137 CCTGATTAAACATATTACGGGTAATCGTCTG 8 199 0 CATATTCGGG 0.75764 -93 ATAATTCGCACACATTGCGGGTTACTGCTTT 20 69 0 CACATTCGGG 0.914869 -91 ACAAAATGCTCATGTTGCGCGCAGTCTGCGT 24 22 1 CATGTTCGCG 0.930585 -189 TGACGCTCTTCACACTCTGCGAGTGTAGACT 31 97 0 CACACTTGCG 0.661636 -67 GCCCTGAGTGCACGTTCGAAG 37 1 0 CACGTTGAAG 0.559658 -81 GCCGTAGGTGCACACTCGACGAGAACAGATA 37 53 1 CACACTGACG 0.733373 -29 GCCGTGAATGCACGTTCGGCG 46 1 0 CACGTTGGCG 0.987913 -73 TCCCTGTGTTCACGTTCGGCGAGGAAACCGG 46 52 1 CACGTTGGCG 0.987913 -22 CGTTGTGCACCACGTTCTGGGGAATGTTGGT 47 150 0 CACGTTTGGG 0.825027 -45 GCCGCGTTGGGCGTTGGCCGGCG 53 38 0 CGCGTTGGCG 0.911432 -13 GACACAATTTCATATTCGACGAGCCCGGGCG 54 125 0 CATATTGACG 0.76212 -114 ****** **** Masking position 6 Map Score: 13.8216 Number of sites scoring better than the average of aligned sites = 571 Number in coding regions = 538 Number in noncoding regions = 33 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 9 GCTAATATCAGCGTTGTTTATTTTACGTCCA 1 156 0 GCGTTGTTAT 0.904799 -145 ACCTCGGTATGCCTTGTGACTGGCTTGACAA 1 206 1 GCCTTGTGCT 0.892929 -95 TTGTAGCGATGCCTTTTGCATCGTATGAATT 2 11 1 GCCTTTTGAT 0.837655 -43 TGGTTATAAGGCGTTATTGTTGCAGGCAGTT 8 69 1 GCGTTATTTT 0.713771 -223 CTACTGAGCGGCGTTTTTGTCGTTCAAGAAA 9 11 0 GCGTTTTTTC 0.809403 -81 TCGGCTGGCGGCGTTTTGCTTTTTATTCTGT 9 53 1 GCGTTTTGTT 0.928533 -39 GCGTTTTTTATTCCCTGACAG 10 175 0 GCGTTTTTAT 0.903165 -11 CGTCATCGCGGCGTTGTTTCTGTTGCCGCCG 11 67 1 GCGTTGTTCT 0.937791 -54 CGTTATTATGCGTTCTTCCTAACTAACTC 12 10 0 GCGTTCTTCT 0.775607 -20 ATTAACGACGGCGTTTTGATTAACTAACATG 17 52 1 GCGTTTTGTT 0.928533 -38 GTTCCGGTGGGCCTTGTTTTTTCTCTCTTTA 18 25 1 GCCTTGTTTT 0.915664 -89 CAATGCTTGCGCCTTTTTCCTGTGGCGTGAA 18 71 1 GCCTTTTTCT 0.908796 -43 ACCACAGGCTGCCTTTTTCTTTGACTCTATG 20 112 1 GCCTTTTTTT 0.914199 -48 TAACCCAACGGCCTTTTTATTTCACCACCTA 35 52 0 GCCTTTTTTT 0.914199 -249 TTGCCTAGGTGCGTTGTGCACCACGTTCTGG 47 161 0 GCGTTGTGAC 0.676957 -34 ******** ** Masking position 5 Map Score: 9.31798 Number of sites scoring better than the average of aligned sites = 386 Number in coding regions = 303 Number in noncoding regions = 83 Number of orfs with sites within 600 bp upstream = 79 Fraction of orfs with sites within 600 bp upstream = 0.0126887 Motif number 10 TTCATATTTCGCGCCGCAGATGCGTTATCTTCGC 6 110 0 GCGGCAGATG 0.657487 -148 GCTCAGTAGATCCTTGCGGATCGGCTGGCGGCGT 9 33 1 TCCGCGGATG 0.95731 -59 AATATTGCTGCGGATCAGCTCACTAATT 30 45 0 TTGGCGGATG 0.901997 -18 CACAGGCTGGTCGAAGCGGCTCTGGATCGATGAC 36 153 0 TCGGCGGCTG 0.977421 -148 CAGCCTGTGGTCGAAGCGGATCAGTTGAACCGGA 36 178 1 TCGGCGGATG 0.988469 -123 ATCTGAGAAGTCGTGGCGGATTAGGCCGCCGCGA 39 264 1 TCGGCGGATG 0.988473 -37 ACCCTCGCGGATCACCCGAACTCGG 41 37 0 CCCGCGGATC 0.947136 -15 TACGAGACTATCGGCGCGGATACCCGCGATGTCG 45 15 1 TCGGCGGATC 0.986891 -47 ACCCGCGATGTCGTGGCGGGGTGCAAAACTATTG 45 36 1 TCGGCGGGGC 0.804501 -26 CGGTTACCCACCGCGGCGGCAGCGGGCCGTGCGC 47 49 0 CCGGCGGCAG 0.80732 -146 CCCTCGCGGAGATGTCTGCCGGTA 51 1 1 CCCGCGGAGG 0.855585 -234 GACAATGTCGTCGCTGTGGATTCCGCTGCCGGGA 52 31 1 TCGGTGGATC 0.809872 -253 TGTAAACTACTCGGCGCAGCTCGCATCGGCGGGC 52 84 1 TCGGCAGCTC 0.803124 -200 CCCCGGCATGCTGTTGCGGATCCCGGAAAGGCGG 52 143 0 CTGGCGGATC 0.880233 -141 CGGGGCGGTCCCGCGGCGGTTCCCTTCGGGGATT 52 172 1 CCGGCGGTTC 0.896904 -112 *** ****** * Masking position 6 Map Score: 13.4416 Number of sites scoring better than the average of aligned sites = 708 Number in coding regions = 678 Number in noncoding regions = 30 Number of orfs with sites within 600 bp upstream = 28 Fraction of orfs with sites within 600 bp upstream = 0.00449727 Motif number 11 CTCCGATTTGTGCCTGTCGCCTGAGGCCGT 3 34 0 TGCCTGTCGC 0.239664 -27 ACACCAATAATTGTTGGCGCTGTGTACAGC 5 90 0 TTGTTGGCGC 0.813999 -211 GGATCGGAAGTCCGGCGCGCTTTATACCAC 5 133 0 TCCGGCGCGC 0.745668 -168 ACGCTCCGGTTGCTGCGCGCTGGCCGTGAC 8 102 0 TGCTGCGCGC 0.954956 -190 TGGGGGTCGCTTTTGCTGAA 11 1 1 TGGGGGTCGC 0.761279 -120 TGCAGTTCTTTGCGTGGCCCGGCGATCTTA 13 67 0 TGCGTGGCCC 0.853247 -55 TAGCCAGGAATGCAGGGCGCATAGTGTAAT 19 105 0 TGCAGGGCGC 0.951014 -41 AAAATGCTCATGTTGCGCGCAGTCTGCGTG 24 24 1 TGTTGCGCGC 0.545364 -187 AGTTTTATCTTTGGGGACGCATAATGCCAT 26 102 0 TTGGGGACGC 0.572401 -54 GTGTGCTGAATTGTTGACGCATTTATTTAT 32 243 1 TTGTTGACGC 0.375945 -29 GGCGTGCAACGGCGTCGCGCTCCGCCGATA 39 200 0 GGCGTCGCGC 0.494534 -101 AGTGGCTATCTGCGTGGCGCGGTGGTTTCT 40 15 0 TGCGTGGCGC 0.967109 -114 CCGGGGCCCCTGCTGGACCCCCTCTGACCG 43 48 0 TGCTGGACCC 0.601482 -191 CTGGTATCTTTCCGGGGCCCCTGCTGGACC 43 59 0 TCCGGGGCCC 0.60259 -180 CCTTCAGCCGTGGTGGACGTTTAGCCGGTG 47 110 0 TGGTGGACGT 0.153928 -85 GACTACGCGCTGCTTCGCGCCGGCGACGAT 50 14 1 TGCTTCGCGC 0.911945 -158 CCGGCGACGATGCAGAGCGCAGCGATGAGG 50 33 1 TGCAGAGCGC 0.708685 -139 GCGGCGCAGATGGTTGGCGCCGGCGACGAT 50 67 1 TGGTTGGCGC 0.951105 -105 CCGGCGACGATGCAGAGCGCAGCGATGAGG 50 86 1 TGCAGAGCGC 0.708685 -86 GCGGCGCAGATGGTTGGCGCCGGCGACGAT 50 120 1 TGGTTGGCGC 0.951105 -52 CCGGCGACGATGCAGAGCGCAGCGATGAGG 50 139 1 TGCAGAGCGC 0.708685 -33 CATGTGTCGGTTGTTCGCCCGGCATCGGCT 52 250 0 TTGTTCGCCC 0.248602 -34 TCACGCGGCCTGCTGGGCGCGTGTCGTAGA 54 85 0 TGCTGGGCGC 0.982285 -154 TGTGACTGCACTGGTGGCGCCGGTGTGTCG 54 157 0 CTGGTGGCGC 0.292499 -82 GGACGAAGCGATGTGGGCGCACCTCCCGCT 56 35 0 ATGTGGGCGC 0.344703 -63 ********** Masking position 8 Map Score: 15.8541 Number of sites scoring better than the average of aligned sites = 2934 Number in coding regions = 2800 Number in noncoding regions = 134 Number of orfs with sites within 600 bp upstream = 141 Fraction of orfs with sites within 600 bp upstream = 0.022647 Motif number 12 TGAGGCCGACGATGATTACGGCCTCAGGCGACAGGC 3 17 1 GTGTACGCTA 0.974779 -44 AATTGTTGGCGCTGTGTACAGCATCAGACGTCGAAT 5 76 0 GTGTACGCTA 0.974779 -225 CGCACACATTGCGGGTTACTGCTTTATTTTCGTTCA 20 58 0 GGGTACGCTA 0.986579 -102 TTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTA 24 83 1 GGGTAAGCTA 0.918864 -128 CTGTAACTACGTTGGCTACAGCCTGAAATGTTCCGA 27 23 0 GTGTACGCTA 0.974779 -60 GGTGGTTTACTCCAGAAATAGCAAAGC 28 49 0 GGGTACCCGA 0.92068 -17 CGATAGCGGGATACTGGATAAGGGTATTAGG 34 6 1 GGGTACGGTA 0.966253 -27 CTGCCGCCGCGGTGGGTAACCGTTCATCCCAATAAT 47 61 1 GTGTAACGTA 0.660389 -134 GAATGTTGGTGAGGTTTACTCCTTCAGCCGTGGTGG 47 124 0 GGGTACCCTA 0.984034 -71 GGGGACTACGCGCTGCTTCGCGCCGG 50 1 1 GGGTACCGTC 0.818872 -171 TTGCTCGAGCGATGCTCACACCTTGAGATAGTCGAC 51 76 1 GTGCACCCTA 0.859208 -159 * ** *** ** * * Masking position 8 Map Score: 5.31895 Number of sites scoring better than the average of aligned sites = 96 Number in coding regions = 89 Number in noncoding regions = 7 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 13 GTGACCGGGATGAGCGAGCGAAGATAACGC 6 93 1 TGAGCGAGCG 0.921461 -165 AAAGTTAATATGCGCGCCCT 20 150 1 TGCGCGCCCT 0.630592 -10 AACCGAAAAGTGACTGAGCGTAC 23 55 1 TGACTGAGCG 0.839876 -13 TTCGCAAGTATGCCTGGCCGCGAGATTATG 29 34 1 TGCCTGGCCG 0.915704 -65 TGACTATAGATGACCGAGCGGCAGCCTGTA 36 127 0 TGACCGAGCG 0.941962 -174 CTGGGTTGTATGCGCGGGCTGAGTATCAGC 39 148 1 TGCGCGGGCT 0.873242 -153 ATCGTCTTGATGCCTGCGCTTGATGCTAAG 48 20 0 TGCCTGCGCT 0.707988 -38 ATTTTGTTGCTGAGCGGCCG 49 1 0 TGAGCGGCCG 0.874827 -22 CCAACTTTGTTGCTCGAGCGATGCTCACAC 51 67 1 TGCTCGAGCG 0.860577 -168 GCCGCGCTCCGGCGTGGGCGGGGTGCGTTA 51 149 0 GGCGTGGGCG 0.811121 -86 CGCAACAGCATGCCGGGGCGGTCCCGCGGC 52 159 1 TGCCGGGGCG 0.939142 -125 TGGGCGATCTTGCCCGAGCGTGCCGACAAC 54 21 0 TGCCCGAGCG 0.976671 -218 ATATTCGACGAGCCCGGGCGACCACTCAGA 54 115 0 AGCCCGGGCG 0.681036 -124 ********** Masking position 9 Map Score: 9.2253 Number of sites scoring better than the average of aligned sites = 1069 Number in coding regions = 1013 Number in noncoding regions = 56 Number of orfs with sites within 600 bp upstream = 45 Fraction of orfs with sites within 600 bp upstream = 0.00722775 Motif number 14 GAATGTATAGTACACTTCGGTTGGATAGGTAATT 4 62 1 TACATTCGGG 0.822944 -39 TTCTCAGGCCTGCCGTTCCGGTGGGCCTTGTTTT 18 11 1 TGCCTTCGGG 0.949739 -103 GCGCAAGCATTGCAATAAAGATGGGGATAAAGAG 18 49 0 TGCATAAGGG 0.881981 -65 CTTCGAACGTGCACTCAGGGCGGGCTCCGTCGG 37 10 1 TGCATCAGGG 0.974327 -72 AACTAAGGGTTGCCTTACCGAAGGTCAAACTCGG 39 87 0 TGCCTACGGG 0.949739 -214 AGCCCGCGCATACAACCCAGTCGGCCCCAGTCGG 39 134 0 TACACCCGGG 0.831154 -167 GCGACGCCGTTGCACGCCGGTTGGCCGGTAACCC 39 212 1 TGCAGCCGGG 0.969653 -89 CGCCGAACGTGCATTCACGGCGGAAAAAAGCGG 46 10 1 TGCATCAGGG 0.974327 -64 TCAAGACGATTGCATTCCACGGGGAAGT 48 40 1 TGCATCCCGG 0.947069 -18 GGATGTGAGATGCCGTCCTGGTGGTGCCGGGATG 51 189 1 TGCCTCCGGG 0.989687 -46 TGCACTCCTGCGGGTTCGCTACCT 55 41 0 TGCATCCGGG 0.993515 -14 **** *** * ** Masking position 1 Map Score: 10.8632 Number of sites scoring better than the average of aligned sites = 234 Number in coding regions = 220 Number in noncoding regions = 14 Number of orfs with sites within 600 bp upstream = 17 Fraction of orfs with sites within 600 bp upstream = 0.00273049 Motif number 15 ACGATGATTACGGCCTCAGGCGACAGGCAC 3 25 1 CGGCCTCAGG 0.853156 -36 CATATTACCGACCCCAAAGGGCACCCCGGA 5 235 0 ACCCCAAAGG 0.857669 -66 AAAAAGAAGCCGCCCTCAGGCGGCTCCTTT 7 18 0 CGCCCTCAGG 0.911409 -129 ACAATGGCGAACCCCACCGGCGGCAACAGA 11 85 0 ACCCCACCGG 0.939666 -36 CAAAGAACTGCACCCTCCGGTGCAAATGGG 13 85 1 CACCCTCCGG 0.846909 -37 GAAAAAACAAGGCCCACCGGAACGGCAGGC 18 18 0 GGCCCACCGG 0.883895 -96 GAAATTATTCACGCCACAGGAAAAAGGCGC 18 79 0 ACGCCACAGG 0.874692 -35 CAGGATTTTTACCCCTAAGGGCTGATAACG 19 47 1 ACCCCTAAGG 0.757595 -99 TGGCAAAAGGCAACCACAGGCTGCCTTTTT 20 100 1 CAACCACAGG 0.565992 -60 CCTGAAGAGTAACCCAACGGCCTTTTTATT 35 62 0 AACCCAACGG 0.764168 -239 TGATCCGCTTCGACCACAGGCTGGTCGAAG 36 171 0 CGACCACAGG 0.753443 -130 AAACATGAGCGGCCCGACGGGAAATTCGAT 36 219 1 GGCCCGACGG 0.753285 -82 CGGCGACGACACGCCGACGGAGCCCGCCCT 37 27 0 ACGCCGACGG 0.779107 -55 AAGAGCTTCGCCGCCGACGGTGCAAAATAT 40 100 1 CCGCCGACGG 0.847494 -29 CTGGAAGATTCGGCCAAAGGCGGTCGGCTC 42 18 0 CGGCCAAAGG 0.845231 -42 TTAGGTAGCGAACCCGCAGGAGTGCA 55 39 1 AACCCGCAGG 0.812711 -16 ********** Masking position 5 Map Score: 10.1026 Number of sites scoring better than the average of aligned sites = 1051 Number in coding regions = 961 Number in noncoding regions = 90 Number of orfs with sites within 600 bp upstream = 81 Fraction of orfs with sites within 600 bp upstream = 0.01301