AlignACE version 2.2 July 7, 1998 /home/amcguire/bin/alignACE -i211_tpal_bbur_300.orf -o211_tpal_bbur_300.ace -a/home/amcguire/genomes/ORF_tpal.txt -z/home/amcguire/genomes/synecho.fna -g0.40 -x5 -e Parameter values: expect = 5 ncols = 10 npass = 1000 maxnpass = 100 nruns = 1000 maxnruns = 100 repeat = 15 maxreps = 3 nread = 500 ncycles = 1 fragment = 1 psfact = 0.1 gcback = 0.4 maxlen = 30 weight = 0.8 exclude = 1 Input sequences: #1 RTP01071 100 AE000520 #2 RTP01112 99 AE000520 #3 RTP00264 30 AE000520 #4 RTP01113 234 AE000520 #5 RTP01114 149 AE000520 #6 RTP00261 106 AE000520 #7 RTP00258 108 AE000520 #8 RTP00257 262 AE000520 #9 RTP00255 102 AE000520 #10 RTP00254 21 AE000520 #11 RTP00253 23 AE000520 #12 RTP00252 145 AE000520 #13 RTP01061 50 AE000520 #14 RTP01060 66 AE000520 #15 RTP00860 78 AE000520 #16 RTP01115 50 AE000520 #17 RTP00859 153 AE000520 #18 RTP00856 236 AE000520 #19 RTP01116 118 AE000520 #20 RBB00509 60 3615 #21 RBB00508 79 3615 #22 RBB00505 32 3615 #23 RBB00504 148 3615 Motif number 1 GCTGGTTCAAGTCCAGTCCGCCGCAAAGGCCCCGC 1 36 1 GTCCGCCGCA 0.858782 -65 GTGTACGCCGCTCCTCTGCTCCGCAAACCCTGGCC 1 72 0 CTCGTCCGCA 0.457926 -29 CGGTTCCGTGGGTACACCCTGCGCG 2 1 0 GGACTGCGCG 0.476861 -99 CCACGGAACCGAACACTGGCCTGCGCTCACTGCGC 2 25 1 GACGCCTGCG 0.958013 -75 TCACCTACCAGGACATACTCGCGCAT 4 2 0 GGCCCGCGCA 0.916613 -233 TGTCCAGAATGAGGACGGTTCTGCGCGGAAGTGCT 4 43 0 GAGGTCTGCG 0.826857 -192 CGTGTTGTTGGATGCGGGCGGTGCGTACCAGGCGA 4 91 0 GAGGGGTGCG 0.961412 -144 TTGATGCGTTGCCGAGCGTGTCGCAGATCGTGTTG 4 119 0 GCGGGTCGCA 0.603684 -116 ACGCGCAGTTGAAAAAACTCGCGCGGTGTTTTGAT 4 149 0 GAACCGCGCG 0.841695 -86 CCGTAATTGTGGAGAATGACGCGCAGTTGAAAAAA 4 167 0 GGGGCGCGCA 0.810963 -68 GAGCGTGATCTTGTGCAGATTCTCGGT 4 218 0 GCTCTGTGCA 0.798382 -17 TTAGCATACTGAGCAGGCAGCTGCGCGTACGCACC 5 45 1 GACCGCTGCG 0.977629 -105 CCTTGTCGCGCAGGTTGCTGGTGCGTACGCGCAGC 5 64 0 CAGCGGTGCG 0.965029 -86 AAGTACCAGTGCGGCTTCCCCTGCGGTGAACAAGC 6 11 0 GCGCCCTGCG 0.97632 -96 CACTGTACTCAACGCTCATGCGCATTCCTACACC 7 10 1 CACCTGCGCA 0.859589 -99 AAGAAAAAATCTAGTCGGTTGCGCGACAACATCTG 7 61 0 CTGGTGCGCG 0.61133 -48 AAACGTAACTCATTGGGCTCCTGCACGTCGGAGAA 8 40 1 CATCCCTGCA 0.729676 -223 ATCCACTCCCGAGCATGCACGCGCGCAGTTTTTTT 8 164 0 GACCCGCGCG 0.980505 -99 GGGAGCACCCCCACTACGTGGTGCGACGTGGAACA 9 25 1 CCCGGGTGCG 0.985005 -78 GGTATCAGAGCCGCTTGCGCTTGCAGTGTTCAAAA 9 63 1 CCCCCTTGCA 0.690872 -40 CGTGCACCGCGTGGTGCACCA 10 4 1 GCCGGGTGCA 0.975928 -18 CACGAGGCTGGCGCAGTCGTGTGCGGTCATGGC 12 9 0 GCCCTGTGCG 0.973735 -137 ACGACTGCGCCAGCCTCGTGGGGCGTAAGAAAGAC 12 24 1 CACGGGGGCG 0.841538 -122 CAGTCCGCGCCTACGGTGCCCTGCGCTCCGTCTTT 12 53 0 CTCGCCTGCG 0.835904 -93 TAGCTTCTCAGACGTGTCGGGGGCATTGCATCCGA 12 108 1 GAGCGGGGCA 0.740642 -38 GATGGCGCCACCATCGGATGCAATGCCCCCGA 12 124 0 CCCCGATGCA 0.619001 -22 GGCGCCTATGCCATCGGGAGCTGCGT 13 2 0 CCTGGCTGCG 0.913023 -49 CGATGGCATAGGCGCCTCACGCGCGTGCTGCCCAG 13 21 1 GGGCCGCGCG 0.874191 -30 GCGCGCTGGGCAGCACGCGCGTGAG 13 36 0 GCCGGCAGCA 0.848782 -15 ATCCTGGATTCCTGCCTCAGGAGCGTGCATGG 14 8 0 CCGCGGAGCG 0.920404 -59 AAGATTTTCTCAGCTGGCTCGCGCGTGAG 15 5 0 CACCCGCGCG 0.973877 -74 CGCCCTACTCAGGTGCGCTGTCGTGAC 17 3 1 CCTCGGTGCG 0.958091 -151 GTGACAGCAGCCTCTGCGCCGTGCACGCGGTAGGA 17 33 1 CCCGCGTGCA 0.959089 -121 TCAAATAGGTGATCCGAGTGCTGCGTTGTTTCTGT 17 85 0 GACGGCTGCG 0.966941 -69 GCTCCTTGGTGCGTAGCGTGCTGCACGGGTATTCC 18 18 0 GCTGGCTGCA 0.866299 -219 TCACGAGATTGCCCACGCTCGAGCAAAGGCGTGGA 18 67 1 GCCCCGAGCA 0.905278 -170 GCCCCAGATACCGTCTACGTCTGCGACGGTTCGAA 18 125 1 CCTCTCTGCG 0.814542 -112 TCGCGAAGCTGCTGTGGCAGCCGCGCGCCAAACTT 19 15 0 GCGCGCCGCG 0.981609 -104 TTGGAAGCTCGCATCAACGGCAGCGAGGGGGCTGC 19 63 1 GCTCGCAGCG 0.8106 -56 CCGGCTAACACATATCACGCGTGCACGCAGCCCCC 19 89 0 CAACCGTGCA 0.640996 -30 ** * * ****** Masking position 13 Map Score: 51.3143 Number of sites scoring better than the average of aligned sites = 2154 Number in coding regions = 665 Number in noncoding regions = 1489 Number of orfs with sites within 600 bp upstream = 32 Fraction of orfs with sites within 600 bp upstream = 0.00513974 Motif number 2 CCGCCGCAAAGGCCCCGCGGGCCAGGGTTTGC 1 53 1 GGCCCGCGGC 0.997723 -48 GCCGCTCCTCTGCTCCGCAAACCCTGGCCCGC 1 69 0 TGCCCGCAAC 0.906248 -32 GTAATTGCCATGCGCAGTGAGCGCAGGCCAGT 2 39 0 TGCCAGTGGC 0.986566 -61 CGCAGCTGCCTGCTCAGTATGCTAAAAGTAGC 5 38 0 TGCCAGTAGC 0.936337 -112 TTTTCCCCATGGGACAGCGTGGTTACCGATCG 8 230 0 GGGCAGCGGG 0.90683 -33 ATACGAACGGCTCAGGGAGCACCCCCACTA 9 9 1 GGCCAGGGGC 0.979353 -94 CGTGCACCGCGTGGTGCACCA 10 3 1 TGCCCGCGGG 0.986783 -19 CGGAGCGCAGGGCACCGTAGGCGCGGACTGCG 12 58 1 GGCCCGTAGC 0.974727 -88 CGATGGCATAGGCGCCTCACGCGCGTGCTGCC 13 21 1 GGCCCTCAGC 0.932769 -30 ACGCGCGTGCTGCCCAGCGCGC 13 39 1 TGCCAGCGGC 0.996482 -12 CAGCAGCCTCTGCGCCGTGCACGCGGTAGGAC 17 37 1 TGCCCGTGAC 0.925994 -117 TTCAAATAGGTGATCCGAGTGCTGCGTTGTTT 17 89 0 TGACCGAGGC 0.88536 -65 TTGAGGCCATTGCACGTCGCGCGTTTCAAATA 17 113 0 TGCCGTCGGC 0.875204 -41 CGCTCCTTGGTGCGTAGCGTGCTGCACGGGTA 18 22 0 TGCTAGCGGC 0.93355 -215 CGGTATCTGGGGCACAGAGTGCGACCATCTCT 18 106 0 GGCCAGAGGC 0.982606 -131 AGCTGCTGTGGCAGCCGCGCGCCAAACTTTGG 19 12 0 GCACCGCGGC 0.854161 -107 CGGCAGCGAGGGGGCTGCGTGCACGCGTGATA 19 80 1 GGGCTGCGGC 0.923653 -39 *** ***** ** Masking position 5 Map Score: 29.2865 Number of sites scoring better than the average of aligned sites = 357 Number in coding regions = 101 Number in noncoding regions = 256 Number of orfs with sites within 600 bp upstream = 9 Fraction of orfs with sites within 600 bp upstream = 0.00144555 Motif number 3 CTGGACTTGAACCAGCAAGCCTTACGGCAC 1 22 0 ACCAGCAAGC 0.538182 -79 CAAAGGCCCCGCGGGCCAGGGTTTGCGGAG 1 59 1 GCGGGCCAGG 0.797858 -42 TGCGGGCGGTGCGTACCAGGCGATGAAGGA 4 84 0 GCGTACCAGG 0.60771 -151 GGTACGCACCGCCCGCATCCAACAACACGA 4 97 1 GCCCGCATCC 0.929306 -138 CAATTACGGTGCGTGCCTCTACCGCACCGA 4 193 1 GCGTGCCTCT 0.897838 -42 GCGCGTACGCACCAGCAACCTGCGCGACAA 5 67 1 ACCAGCAACC 0.626653 -83 CACAAGTGCAGCGTACCACCTGCACCATGA 6 54 1 GCGTACCACC 0.814403 -53 ACAGATGTTGTCGCGCAACCGACTAGATTT 7 60 1 TCGCGCAACC 0.507718 -49 AAAACTGCGCGCGTGCATGCTCGGGAGTGG 8 167 1 GCGTGCATGC 0.861032 -96 GTAAACCAAAGCGTGCCATCCACTCCCGAG 8 186 0 GCGTGCCATC 0.78271 -77 ACACGACTGCGCCAGCCTCGTGGGGCGTAA 12 22 1 GCCAGCCTCG 0.935551 -124 GAGAAGCTAAACGAGCCTCCACATTCACGC 12 87 0 ACGAGCCTCC 0.893735 -59 GATGGCGCCACCATCGGATGCAATGC 12 130 0 GCCACCATCG 0.576282 -16 CGCCTCACGCGCGTGCTGCCCAGCGCGC 13 33 1 GCGTGCTGCC 0.656389 -18 TGCCTCAGGAGCGTGCATGG 14 1 0 GCGTGCATGG 0.96078 -66 CTCACGCGCGAGCCAGCTGAGAAAATC 15 8 1 GCGAGCCAGC 0.968471 -71 GTGTCCTACCGCGTGCACGGCGCAGAGGCT 17 41 0 GCGTGCACGG 0.783647 -113 GGCACAGAGTGCGACCATCTCTTCTATCCA 18 98 0 GCGACCATCT 0.426518 -139 GGGTAGCCAAGCCAGCATCCACCATTTTCT 18 183 0 GCCAGCATCC 0.959082 -54 AAAGTTTGGCGCGCGGCTGCCACAGCAGCT 19 14 1 GCGCGGCTGC 0.624273 -105 CCAAAACCTCGAGTGCATCGCGAAGCTGCT 19 37 0 GAGTGCATCG 0.570103 -82 TGCCGTTGATGCGAGCTTCCAAAACCTCGA 19 55 0 GCGAGCTTCC 0.924351 -64 CGAGGGGGCTGCGTGCACGCGTGATATGTG 19 86 1 GCGTGCACGC 0.497953 -33 ********** Masking position 2 Map Score: 18.4221 Number of sites scoring better than the average of aligned sites = 961 Number in coding regions = 262 Number in noncoding regions = 699 Number of orfs with sites within 600 bp upstream = 20 Fraction of orfs with sites within 600 bp upstream = 0.00321234 Motif number 4 TCCAAGAAAGTGCAGAGGAACTAAA 3 6 1 GAAAGTGCAG 0.901407 -25 CCTGGTAGGTGAAAAAAGAGCACTTCCGCG 4 25 1 GAAAAAAGAG 0.894366 -210 GGAAAGAGGAGAGGTTTAAAG 6 96 0 GAAAGAGGAG 0.989365 -11 TTGTCTTCAAGAGAGAGGTGAGGAAACAGC 8 100 0 GAGAGAGGTG 0.885427 -163 TTGGTTTACAGAACATGGAGACACGATCGG 8 207 1 GAACATGGAG 0.857113 -56 GGAAAGTGGTGGAATGACTGC 11 2 1 GAAAGTGGTG 0.968928 -22 CGGACTGCGTGAATGTGGAGGCTCGTTTAG 12 81 1 GAATGTGGAG 0.916777 -65 CAAAGGCGTGGATAGAAGAGATGGTCGCAC 18 90 1 GATAGAAGAG 0.764296 -147 GCGACGGTTCGAAAAAAGAGTACGACACCA 18 147 1 GAAAAAAGAG 0.894366 -90 CCATTATGCAGAAAATGGTGGATGCTGGCT 18 174 1 GAAAATGGTG 0.919723 -63 CGAAAGAGGAAGCAGTTCTTA 18 226 0 GAAAGAGGAA 0.879957 -11 ********** Masking position 2 Map Score: 9.75221 Number of sites scoring better than the average of aligned sites = 295 Number in coding regions = 80 Number in noncoding regions = 215 Number of orfs with sites within 600 bp upstream = 4 Fraction of orfs with sites within 600 bp upstream = 0.000642467 Motif number 5 GGGCGTGTACGCCGCTCCTCTGCTCCG 1 84 0 GGTACCGCTC 0.922784 -17 GGTTCCGTGGGTACACCCTGCGCG 2 2 0 GACACCGCGC 0.958477 -98 ACACTGGCCTGCGCTCACTGCGCATGGCAATTA 2 37 1 GGCTCCGCGC 0.654049 -63 GTACGGTCTGACGGAAACGGCGCCGGTAATTGC 2 63 0 AGGAACGCGC 0.953503 -37 TCTACCGCACCGAGAATCTGCACAAGATCACGC 4 210 1 CAGAACGCAC 0.418401 -25 GCATACTGAGCAGGCAGCTGCGCGTACGCACCA 5 48 1 CGGCACGCGC 0.942755 -102 GCGTACGCACCAGCAACCTGCGCGACAAGGTGA 5 69 1 CGCAACGCGC 0.98919 -81 TTCTTGCTCCGTTCAATCCGCTCTTCGGAGGAC 5 108 1 GTCAACGCTC 0.773696 -42 GTTCACCGCAGGGGAAGCCGCACTGGTACTTAG 6 15 1 GGGAACGCAC 0.953418 -92 AGAGAGAGGTGAGGAAACAGCGCAAAATCTTGG 8 88 0 GGGAACGCGC 0.994171 -175 AACACTGCAAGCGCAAGCGGCTCTGATACCTTG 9 60 0 GGCAACGCTC 0.842589 -43 CTCCACATTCACGCAGTCCGCGCCTACGGTGCC 12 68 0 AGCAGCGCGC 0.837089 -78 GCGCGCTGGGCAGCACGCGCGTGAGGCGCC 13 31 0 GGCAGAGCGC 0.736306 -20 GTGTCCTACCGCGTGCACGGCGCAGAGGCTGCT 17 38 0 GGTGCCGCGC 0.835773 -116 AGAAACAACGCAGCACTCGGATCACCTATTTGA 17 87 1 CGCACCGATC 0.654163 -67 AATACCCGTGCAGCACGCTACGCACCAAGGAGC 18 20 1 CGCACCACGC 0.86363 -217 GAAGAGATGGTCGCACTCTGTGCCCCAGATACC 18 104 1 TGCACCGTGC 0.658554 -133 CGAAAGAGGAAGCAGTTCTTACGTTTTT 18 219 0 GGGAACGTTC 0.79524 -18 CGAAGCTGCTGTGGCAGCCGCGCGCCAAACTTT 19 14 0 GGGCACGCGC 0.974683 -105 CATATCACGCGTGCACGCAGCCCCCTCGCTGCC 19 81 0 GGCACCGCCC 0.963649 -38 * **** * **** Masking position 13 Map Score: 27.3669 Number of sites scoring better than the average of aligned sites = 357 Number in coding regions = 101 Number in noncoding regions = 256 Number of orfs with sites within 600 bp upstream = 10 Fraction of orfs with sites within 600 bp upstream = 0.00160617 Motif number 6 GACGGTTCTGCGCGGAAGTGCTCTTTTTTC 4 35 0 CGCGGAAGTG 0.958264 -200 CTAAAAGTAGCTCAGGAGTCTTTGAAATTA 5 19 0 CTCAGGAGTC 0.781061 -131 GTTGTACGTCCTCCGAAGAGCGGATTGAAC 5 118 0 CTCCGAAGAG 0.578876 -32 CATTCCAATTCTCCGACGTGCAGGAGCCCA 8 53 0 CTCCGACGTG 0.967572 -210 CGCGTGCATGCTCGGGAGTGGATGGCACGC 8 176 1 CTCGGGAGTG 0.9792 -87 ACGAGGCTGGCGCAGTCGTGTGCGGTCATG 12 13 0 CGCAGTCGTG 0.940582 -133 CGTTTAGCTTCTCAGACGTGTCGGGGGCAT 12 104 1 CTCAGACGTG 0.977935 -42 ATAGGCGCCTCACGCGCGTGCTGCCCAGCG 13 28 1 CACGCGCGTG 0.483832 -23 GGATTCCTGCCTCAGGAGCGTGCATGG 14 8 0 CTCAGGAGCG 0.851788 -59 TCTCAGCTGGCTCGCGCGTGAG 15 3 0 CTCGCGCGTG 0.720481 -76 TACTCAGGTGCGCTGTCGTGACAGCAGCCT 17 16 1 CGCTGTCGTG 0.793931 -138 CACGCCTTTGCTCGAGCGTGGGCAATCTCG 18 70 0 CTCGAGCGTG 0.825726 -167 TTCGAACCGTCGCAGACGTAGACGGTATCT 18 130 0 CGCAGACGTA 0.723753 -107 ********** Masking position 3 Map Score: 11.9822 Number of sites scoring better than the average of aligned sites = 200 Number in coding regions = 64 Number in noncoding regions = 136 Number of orfs with sites within 600 bp upstream = 6 Fraction of orfs with sites within 600 bp upstream = 0.000963701 Motif number 7 GCACGCACCGTAATTGTGGAGAATGACGCG 4 179 0 TAATTGTGGA 0.813868 -56 TACGCTGCACTTGTGGTGTAACTAAGTACC 6 39 0 TTGTGGTGTA 0.855434 -68 TCGCACCACGTAGTGGGGGTGCTCCCTGAG 9 21 0 TAGTGGGGGT 0.868131 -82 GGAAAGTGGTGGAATGACTGCGT 11 4 1 AAGTGGTGGA 0.920796 -20 AAGTTTTTGCTTATGGTGGTG 17 143 1 TTATGGTGGT 0.837657 -11 ATTTTCTGCATAATGGTGTCGTACTCTTTT 18 160 0 TAATGGTGTC 0.874769 -77 ATTATGCAGAAAATGGTGGATGCTGGCTTG 18 176 1 AAATGGTGGA 0.933751 -61 TACGTTTTTTTAATGGGGTAGCCAAGCCAG 18 198 0 TAATGGGGTA 0.917332 -39 ATTAGTAACATAATGGTGTAATATATTTAA 23 31 1 TAATGGTGTA 0.957809 -118 ********** Masking position 4 Map Score: 4.21574 Number of sites scoring better than the average of aligned sites = 596 Number in coding regions = 161 Number in noncoding regions = 435 Number of orfs with sites within 600 bp upstream = 11 Fraction of orfs with sites within 600 bp upstream = 0.00176678 Motif number 8 CCGCGCAGAACCGTCCTCATTCTGGACAAA 4 50 1 CCGTCCTCAT 0.872522 -185 CGCTTTAAACCTCTCCTCTTTCC 6 94 1 CTCTCCTCTT 0.928998 -13 CATAATGGTGTCGTACTCTTTTTTCGAACC 18 152 0 TCGTACTCTT 0.808783 -85 CGTAAGAACTGCTTCCTCTTTCG 18 224 1 GCTTCCTCTT 0.941588 -13 AAAACCTTCCTCTTAATCTTCAAT 20 47 0 CCTTCCTCTT 0.982686 -14 ATTTTCCTCTACGAATTAAAT 21 69 0 TTTTCCTCTA 0.756387 -11 TTTTCCTCTTTTTTACTATT 23 1 1 TTTTCCTCTT 0.945432 -148 AATCCCCTTTACTCTTTAAATACCTA 23 133 0 CTTTACTCTT 0.891122 -16 ********** Masking position 4 Map Score: 3.02747 Number of sites scoring better than the average of aligned sites = 156 Number in coding regions = 52 Number in noncoding regions = 104 Number of orfs with sites within 600 bp upstream = 8 Fraction of orfs with sites within 600 bp upstream = 0.00128493 Motif number 9 TGCGGAGCAGAGGAGCGGCGTACACGCCC 1 82 1 AGGAGCGGCG 0.969934 -19 ACGGTCTGACGGAAACGGCGCCGGTAATTG 2 64 0 GGAAACGGCG 0.946713 -36 GTTGTTGGATGCGGGCGGTGCGTACCAGGC 4 93 0 GCGGGCGGTG 0.849854 -142 AGCATACTGAGCAGGCAGCTGCGCGTACGC 5 47 1 GCAGGCAGCT 0.819324 -103 GTACGCACCAGCAACCTGCGCGACAAGGTG 5 71 1 GCAACCTGCG 0.790765 -79 AGAGAGGTGAGGAAACAGCGCAAAATCTTG 8 89 0 GGAAACAGCG 0.7777 -174 ATACGAACGGCTCAGGGAGCAC 9 3 1 ACGAACGGCT 0.756716 -100 CACTGCAAGCGCAAGCGGCTCTGATACCTT 9 61 0 GCAAGCGGCT 0.962005 -42 CACCGTAGGCGCGGACTGCGTGAATGTGGA 12 70 1 GCGGACTGCG 0.933105 -76 CTATGCCATCGGGAGCTGCGT 13 2 0 GGGAGCTGCG 0.985331 -49 TGCACGGCGCAGAGGCTGCTGTCACGACAG 17 28 0 AGAGGCTGCT 0.785225 -126 CTACGCACCAAGGAGCGGCGTTATGGAACT 18 37 1 AGGAGCGGCG 0.969934 -200 CCAAAGTTTGGCGCGCGGCTGCCACAGCAG 19 12 1 GCGCGCGGCT 0.906124 -107 GAGTGCATCGCGAAGCTGCTGTGGCAGCCG 19 27 0 CGAAGCTGCT 0.641112 -92 ACGGCAGCGAGGGGGCTGCGTGCACGCGTG 19 79 1 GGGGGCTGCG 0.983944 -40 ********** Masking position 6 Map Score: 18.6948 Number of sites scoring better than the average of aligned sites = 1324 Number in coding regions = 405 Number in noncoding regions = 919 Number of orfs with sites within 600 bp upstream = 41 Fraction of orfs with sites within 600 bp upstream = 0.00658529 Motif number 10 GAGCGTGTCGCAGATCGTGTTGTTGGATGC 4 111 0 CAGATCGTGT 0.947545 -124 TGATGCGTTGCCGAGCGTGTCGCAGATCGT 4 123 0 CCGAGCGTGT 0.994046 -112 CATCAAAACACCGCGCGAGTTTTTTCAACT 4 148 1 CCGCGCGAGT 0.925834 -87 AGCGTGGTTACCGATCGTGTCTCCATGTTC 8 217 0 CCGATCGTGT 0.992869 -46 GCTCCCTGAGCCGTTCGTAT 9 1 0 CCGTTCGTAT 0.81673 -102 GGCATTGCATCCGATGGTGGCGCCATC 12 129 1 CCGATGGTGG 0.947409 -17 ACGCCTTTGCTCGAGCGTGGGCAATCTCGT 18 69 0 TCGAGCGTGG 0.936104 -168 ********** Masking position 7 Map Score: 3.92016 Number of sites scoring better than the average of aligned sites = 29 Number in coding regions = 7 Number in noncoding regions = 22 Number of orfs with sites within 600 bp upstream = 5 Fraction of orfs with sites within 600 bp upstream = 0.000803084 Motif number 11 AGGCCCCGCGGGCCAGGGTTTGCGGAGCAG 1 62 1 GGCCAGGGTT 0.991012 -39 AGTGAGCGCAGGCCAGTGTTCGGTTCCGTG 2 26 0 GGCCAGTGTT 0.99245 -74 GGTCAGTGTTTTTTATTAAT 21 1 1 GGTCAGTGTT 0.979674 -79 ********** Masking position 5 Map Score: 0.281506 Number of sites scoring better than the average of aligned sites = 46 Number in coding regions = 12 Number in noncoding regions = 34 Number of orfs with sites within 600 bp upstream = 3 Fraction of orfs with sites within 600 bp upstream = 0.00048185 Motif number 12 ********** No masking Map Score: 3.64809e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 13 ********** No masking Map Score: 3.64809e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0 Motif number 14 ********** No masking Map Score: 3.64809e-13 Number of sites scoring better than the average of aligned sites = 0 Number in coding regions = 0 Number in noncoding regions = 0 Number of orfs with sites within 600 bp upstream = 0 Fraction of orfs with sites within 600 bp upstream = 0